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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13299#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1006 fasta sequence
[TTATAGCACTGCCTCTCCTCCAAGCTAGCAGCTCAGCTAAGCTCCATTACTACCCAGCTTCTCCTCATCCCTCTCAAGATCAAGAACTCATCAAGAAGCCTGCGACCTCACCGGAATCAAATCGTCAGTGGCGGCGTGGTCGCTGTGACGATGGAGAAGTGCAGGTCGGTGCCGCACGAGCACTCGGCGGCGTACTACGGCTGC-GGCGGCGGGTACGACTACGAGGACGTGAGC-GGAGGCGGCGGCGGCGC-CGCAGCGAAG--TCG-TACAGC-TTCAACGGGCCAAGCGCCCGCGA-TGACCCGGAGGCGAAGCGGCGGCGG-CGGGTGGCGGCGTACAACGTGTTCGCG-ACGCAG-GGGAGGCTCAAGTCCACCGTCCGGAGCAGCTTCAAGTGGATCAAGTCCAAGTTCTCC-GACATCCGCTACGGTGGCCTCTGAACTGAT-GAACCTACCCTG-CATATATG-CATATATACATATATATGATAATATATCTATCTATGTATGTATACTGCTACATATATGATACAGACTTGCATGCATGCATAGCTAAATTAAGTTGAAGCTGATATGTGCATGTTTGAGGAGCTATGATGAACTGTGTGTGTGAGTGATCTACTGATCTTGAGTTGCCTTATGAAGTTATGGTCAACTGCCAGATCGGTGCTATGTGTTTTCACTTTTTTTTTTGGGTCTTATGAGTTGAGAAAGAAGA-GGGGGAGGAATTTGAAGAACTTGCAGGGGTTGGATCCTGCTTAATTTG-AAATTAAGTTGGGTTCACCTAAAAAAAAAAAAAAAAAAAAAAAAACCTCGGGGGGGGCCCGGGCCCATTCCGCCTAATGAGGTGGATTCCCGCCCTCCTGCGCGGGTTAAAACGTGTGGCTGGAAACCCTGGGTTCCAATTATGGCTGAAGCAATCCCTTTGCGTTGGTATGCGAAGAGCCCCCACCCCTCCACGGTGACCCTAAGGAGTGACCCCCTGACGGATTACCCGGGGGGGGGTCCCGGAACGCAC]
[+] EMBL BE040726 [TTATAGCACTGCCTCTCCTCCAAGCTAGCAGCTCAGCTAAGCTCCATTACTACCCAGCTTCTCCTCATCCCTCTCAAGATCAAGAACTCATCAAGAAGCCTGCGACCTCACCGGAATCAAATCGTCAGTGGCGGCGTGGTCGCTGTGACGATGGAGAAGTGCAGGTCGGTGCCGCACGAGCACTCGGCGGCGTACTACGGCTGC GGCGGCGGGTACGACTACGAGGACGTGAGC GGCGGCGGCGGCGGCGC CGCAGCGAAG TCG TACAGC TTCAACGGGCCAAGCGCCCGCGA TGACCCGGAGGCGAAGCGGCGGCGG CGGGTGGCGGCGTACAACGTGTTCGCG ACGCAG GGGAGGCTCAAGTCCACCGTCCGGAGCAGCTTCAAGTGGATCAAGTCCAAGTTCTCC GACATCCGCTACGGTGGCCTCTGAACTGAT GAACCTACCCTG CATATATG CATATATACATATATATGATAATATATCTATCTATGTATGTATACTGCTACATATATGATACAGTCTTGCATGCATGCATAGCTAAATTAAGTTGAAGCTGATATGTGCATGTTTGAGGAGCTATGATGAACTGTGTGTGTGAGTGATCTACTGATCTTGAATTGCCTTATGAAGTTATGGTCAACTGTCAGATCGGTGCTATGTGGTTTCACTTTTTTTTTTTGGTCTTATGAGTTGAGAAAGAGGAGGGGGGAGGGA TTGAAGAACTTGCAGGGGTTGGATCCTGCTTAATTTG AAATTAAGTTGGGTTCACCTAAAAAAAAAAAAAAAAAAAAAAAAACCTCGGGGGGGGCCCGGGCCCATTCCGCCTAATGAGGTGGATTCCCGCCCTCCTGCGCGGGTTAAAACGTGTGGCTGGAAACCCTGGGTTCCAATTATGGCTGAAGCAATCCCTTTGCGTTGGTATGCGAAGAGCCCCCACCCCTCCACGGTGACCCTAAGGAGTGACCCCCTGACGGATTACCCGGGGGGGGGTCCCGGAACGCAC]
[+] EMBL OSS15047A [ AGCACTGCCTCTCCTCCAAGCTAGCAGCTCAGCTAAGCTCCATTACTACCCAGCTTCTCCTCATCCCTCTCAAGATCAAGAACTCATCAAGAAGCCTGCGACCTCACCGGAATCAAATCGTCAGTGGCGGCGTGGTCGCTGTGACGATGGAGAAGTGCAGGTCGGTGCCGCACGAGCACTCGGCGGCGTACTACGGCTGCGGGCGGCGGGTACGACTACNAGGACGTNAGCGGGAGGCGGCGGCGGCGCNCGAA AAGT TCG TACAGC TTCAACGGGCCAAGCGCCCGGAA TGACCCGGAGGCGAAGGGGCGGCGG CGGGTGGCGGCGTACAACGTNTTCGCG ACGC ]
[+] EMBL AK071855 [ CACTGCCTCTCCTCCAAGCTAGCAGCTCAGCTAAGCTCCATTACTACCCAGCTTCTCCTCATCCCTCTCAAGATCAAGAACTCATCAAGAAGCCTGCGACCTCACCGGAATCAAATCGTCAGTGGCGGCGTGGTCGCTGTGACGATGGAGAAGTGCAGGTCGGTGCCGCACGAGCACTCGGCGGCGTACTACGGCTGC GGCGGCGGGTACGACTACGAGGACGTGAGC GGAGGCGGCGGCGGCGC CGCCGCGAAG TCG TACAGC TTCAACGGGCCAAGCGCCCGCGA TGACCCGGAGGCGAAGCGGCGGCGG CGGGTGGCGGCGTACAACGTGTTCGCG ACGCAG GGGAGGCTCAAGTCCACCGTCCGGAGCAGCTTCAAGTGGATCAAGTCCAAGTTCTCC GACATCCGCTACGGTGGCCTCTGAACTGAT GAACCTACCCTG CATATATG CATATATACATATATATGATAATATATCTATCTATGTATGTATACTGCTACATATATGATACAGACTTGCATGCATGCATAGCTAAATTAAGTTGAAGCTGATATGTGCATGTTTGAGGAGCTATGATGAACTGTGTGTGTGAGTGATCTACTGATCTTGAGTTGCCTTATGAAGTTATGGTCAACTGCCAGATCGGTGCTATGTGTTTTCACTTTTTTTTTTGGGTCTTATGAGTTGAGAAAGAAGA GGGGGAGGAATTTGAAGAACTTGCAGTGGTTGTATCCTGCTTAATTTGCAAATT ]
[+] EMBL OSC29352 [ TCTCCTCCAAGCTAGCAGCTCAGCTAAGCTCCATTACTACCCAGCTTCTCCTCATCCCTCTCAAGATCAAGAACTCATCAAGAAGCCTGCGACCTCACCGGAATCAAATCGTCAGTGGCGGCGTGGTCGCTGTGACGATGGAGAAGTGCAGGTCGGTGCCGCACGAGCACTCGGCGGCGTACTACGGCTGC GGCGGCGGGTACGACTACGAGGACGTNAGC GGAGGCGGCGGCGGNGC CGNA AAGGTTCGTTACAGCTTTCAACGGGCCAAGNGNCCGCGATTGACCCGGAGGCGAAG GGCGGCGG CGGGTTGCGGCGTA ]
[+] EMBL OSC29332 [ TCTCCTCCAAGCTAGCAGCTCAGCTAAGCTCCATTACTACCCAGCTTCTCCTCATCCCTCTCAAGATCAAGAACTCATCAAGAAGCCTGCGACCTCACCGGAATCAAATCGTCAGTGGCGGCGTGGTCGCTGTGACGATGGAGAAGTGCAGGTCGGTGCCGCACGAGCACTCGGCGGCGTACTACGGCTGC GGCGGCGGGTACGACTACGAGGACGTNAGC GGAGGCGGCGGCGGCGC GGAAANG T TCGTTACAGC TTCAACGGG ]
[+] EMBL AU076286 [ CTCCTCCAAGCTAGCAGCTCAGCTAAGCTCCATTACTACCCAGCTTCTCCTCATCCCTCTCAAGATCAAGAACTCATCAAGAAGCCTGCGACCTCACCGGAATCAAATCGTCAGTGGCGGCGTGGTCGCTGTGACGATGGAGAAGTGCAGGTCGGTGCCGCACGAGCACTCGGCGGCGTACTACGGCTGC GGCGGCGGGTACGACTACGAGGACGTGAGC GGAGGCGGCGGCGGC CGAAG TCG TACAGC TTCAACGGGCCAAGCGCCCGCGA TGACCCGGA GCGAAG GGCGGCGGNCGGGTGGCGGCGTACAACGTGTTCGCGAACGCAGNGGGAGGCTCAAGTCCACCGTCCGGAGCAGCTTCAATTGGATCAAGTCCAGGTTCTCCGGACATCCGCTACGTTGNCCTCTGAACTGATNGAACTTACCCTGNCATATATGCCATATAnta ]
[+] EMBL CB685021 [ TAGCCGTTCAGCTAAGCTCCATTACTACCCAGCTTCTCCTCATCCCTCTCAAGATCAAGAACTCATCAAGAAGCCTGCGACCTCACCGGAATCAAATCGTCAGTGGCGGCGTGGTCGCTGTGACGATGGAGAAGTGCAGGTCGGTGCCGCACGAGCACTCGGCGGCGTACTACGGCTGC GGCGGCGGGTACGACTACGAGGACGTGAGC GGAGGCGGCGGCGGCGC CGCCGCGAAG TCG TACAGC TTCAACGGGCCAAGCGCCCGCGA TGACCCGGAGGCGAAGCGGCGGCGG CGGGTGGCGGCGTACAACGTGTTCGCG ACGCAG GGGAGGCTCAAGTCCACCGTCCGGAGCAGCTTCAAGTGGATCAAGTCCAAGTTCTCC GACATCCGCTACGGTGGCCTCTGAACTGAT GAACCTACCCTG CATATATG CATATATACATATATATGATAATATATCTATCTATGTATGTATACTGCTACATATATGATACAGACTTGCATGCATGCATAGCTAAATTAAGTTGAAGCTGATATGTGCATGTTTGAGGAGCTATGATGAACTGTGTGTGTGAGTGATCTACTGATCTTGAGTTGCCTTATGAAGTTATGGTCAACTGCCAGATCGGTGCTATGTGTTTTCACTTTTTTTTTTGGGTCTTATGAGTTGAGAAAGAAGA GGGGGAGGAATTTGAAGAACTTGCAGGGGT ]
consensusID : consensus_13299#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 676 fasta sequence
[ACTACCCAGCTTCTCCTCATCCCTCTCAAGATCAAGAACTCATCAAGAAGCCTGCGACCTCACCGGAATCAAATCGTCAGTGGCGGCGTGGTCGCTGTGACGATGGAGAAGTGCAGGTCGGTGCCGCACGAGCACTCGGCGGCGTACTACGGCTGCGGCGGCGGGTACGACTACGAGGACGTGAGCGGAGGCGGCGTACAACGTGTTCGCGACGCAGGGGAGGCTCAAGTCCACCGTCCGGAGCAGCTTCAAGTGGAT-CAAGTCCAA-GTTCT-AAAACATCCGC-TA-CGGTGG-CCTCTGAACTGA-TGAACCTACCCTGCATA-TATG-CA-TA-TA-TACATATATATGA-TAATATATCT-ATCTATGTATGTATACTGCTACATATATGATACAGACTTGCATGCATGCATAGCTAAATTAAGTTGAAGCTGATATGTGCATGTTTGAGGAGCTATGATGAACTGTGTGTGTGAGTGATCTACTGATCTTGAGTTGCCTTATGAAGTTATGGTCAACTGCCAGATCGGTGCTATGTGTTTTCACTTTTTTTTTTGGGTCTTATGAGTTGAGAAAGAAGAGGGGGAGGAATTTGAAGAACTTGCAGTGGTTGTATCCTGCTTAATTTGCAAATTAAGTTGTATCAACTATCAAGCCATGTCCTCTGTTTCTAAAAAAAAAAAAA]
[-] EMBL CF334142 [ACTACCCAGCTTCTCCTCATCCCTCTCAAGATCAAGAACTCATCAAGAAGCCTGCGACCTCACCGGAATCAAATCGTCAGTGGCGGCGTGGTCGCTGTGACGATGGAGAAGTGCAGGTCGGTGCCGCACGAGCACTCGGCGGCGTACTACGGCTGCGGCGGCGGGTACGACTACGAGGACGTGAGCGGAGGCGGCGTACAACGTGTTCGCGACGCAGGGGAGGCTCAAGTCCACCGTCCGGAGCAGCTTCAAGTGGAT CAAGTCCAA GTTCT AAAACATCCGC TA CGGTGG CCTCTGAACTGA TGAACCTACCCTGCATA TATG CA TA TA TACATATATATGA TAATATATCT ATCTATGTATGTATACTGCTACATATATGATACAGA ]
[+] EMBL CF334141 [ ATCCCTCTCAAGATCAAGAACTCATCAAGAAGCCTGCGACCTCACCGGAATCAAATCGTCAGTGGCGGCGTGGTCGCTGTGACGATGGAGAAGTGCAGGTCGGTGCCGCACGAGCACTCGGCGGCGTACTACGGCTGCGGCGGCGGGTACGACTACGAGGACGTGAGCGGAGGCGGCGTACAACGTGTTCGCGACGCAGGGGAGGCTCAAGTCCACCGT ]
[+] EMBL AU090615 [ CACCGTCCGGAGCAGCTTCAAGTGGATNCAAGTCCAAGGTTCTNCCGACATCCGCTTACCTGTGG CCTCTGAACNGA TGAACCTACCCTGCATA TATG CA TA TA TACATATATATGA TAATATATCTAATCTATGTATGTATACTGCTACATATATGATACAGACTTGCATGCATGCATAGCTAAATTAAGTTGAAGCTGATATGTGCATGTTTGAGGAGCTATGATGAACTGTGTGTGTGAGTGATCTACTGATCTTGAGTTGCCTTATGAAGTTATGGTCAACTGCCAGATCGGTGCTATGTGTTTTCACTTTTTTTTTTGGGTCTTATGAGTTGAGAAAGAAGAGGGGGAGGAATTTGAAGAACTTGCAGTGGTTGTATCCTGCTTAATTTGCAAATTAAGTTGTATCAACTATCAAGCCATGTCCTCTGTTTCTAAAAAAAAAAAAA]
[+] EMBL AU076287 [ GGTGGCCCNCTGAACTGATTGAACCTACCCTGCATATTATGCCATTATTATTACATATATATGATTAATATATCT ATCTATGTATGTATACTGCTACATATATGATACAGACTTGCATGCATGCATAGCTAAATTAAGTTGAAGCTGATATGTGCATGTTTGAGGAGCTATGATGAACTGTGTGTGTGAGTGATCTACTGATCTTGAGTTGCCTTATGAAGTTATGGTCAACTGCCAGATCGGTGCTATGTGTTTTCACTTTTTTTTTTGGGTCTTATGAGTTGAGAAAGAAGAGGGGGAGGAATTTGAAGAACTTGCAGTGGTTGTATCCTGCTTAATTTGCAAATTAAGTTGTATCAACTATCAAGCCAaa ]
consensusID : consensus_13299#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 329 fasta sequence
[AGCTCAGCTAAGCTCCATTACTACCCAGCTTCTCCTCATCCCTCTCAAGATCAAGAACTCATCAAGAAGCCTGCGNCCTCACCGGGGGCAAATCGTCAGTGGCGGCGTGGTCGCTGTGACGATGGAGAAGTGCAGGTCGGTGCCGCACGAGCACTCGGCGCGTACTACGGCTGCGGCGGCGGGTACGACTACGAGGACGTGAGCGGAGGCGNCNGGCGGCCGAANGTTCGGTAACAAGCTTTCAACGGGCCAAGCGCCCGCGANTGACCCGGAGCGAAGNGCGGCNGCGGGTGGCGGCGTACAACGTGTTCGCGACGAGGGGAGGCTCA]
[+] EMBL C27954 [AGCTCAGCTAAGCTCCATTACTACCCAGCTTCTCCTCATCCCTCTCAAGATCAAGAACTCATCAAGAAGCCTGCGNCCTCACCGGGGGCAAATCGTCAGTGGCGGCGTGGTCGCTGTGACGATGGAGAAGTGCAGGTCGGTGCCGCACGAGCACTCGGCGCGTACTACGGCTGCGGCGGCGGGTACGACTACGAGGACGTGAGCGGAGGCGNCNGGCGGCCGAANGTTCGGTAACAAGCTTTCAACGGGCCAAGCGCCCGCGANTGACCCGGAGCGAAGNGCGGCNGCGGGTGGCGGCGTACAACGTGTTCGCGACGAGGGGAGGCTCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13299#0 TTATAGCACTGCCTCTCCTCCAAGCTAGCAGCTCAGCTAAGCTCCATTACTACCCAGCTT 60
consensus_13299#1 ------------------------------------------------ACTACCCAGCTT 12
consensus_13299#2 -----------------------------AGCTCAGCTAAGCTCCATTACTACCCAGCTT 31
************
consensus_13299#0 CTCCTCATCCCTCTCAAGATCAAGAACTCATCAAGAAGCCTGCGACCTCACCGGAATCAA 120
consensus_13299#1 CTCCTCATCCCTCTCAAGATCAAGAACTCATCAAGAAGCCTGCGACCTCACCGGAATCAA 72
consensus_13299#2 CTCCTCATCCCTCTCAAGATCAAGAACTCATCAAGAAGCCTGCGNCCTCACCGGGGGCAA 91
******************************************** ********* ***
consensus_13299#0 ATCGTCAGTGGCGGCGTGGTCGCTGTGACGATGGAGAAGTGCAGGTCGGTGCCGCACGAG 180
consensus_13299#1 ATCGTCAGTGGCGGCGTGGTCGCTGTGACGATGGAGAAGTGCAGGTCGGTGCCGCACGAG 132
consensus_13299#2 ATCGTCAGTGGCGGCGTGGTCGCTGTGACGATGGAGAAGTGCAGGTCGGTGCCGCACGAG 151
************************************************************
consensus_13299#0 CACTCGGCGGCGTACTACGGCTGCGGCGGCGGGTACGACTACGAGGACGTGAGCGGAGGC 240
consensus_13299#1 CACTCGGCGGCGTACTACGGCTGCGGCGGCGGGTACGACTACGAGGACGTGAGCGGAGGC 192
consensus_13299#2 CACTCGGCG-CGTACTACGGCTGCGGCGGCGGGTACGACTACGAGGACGTGAGCGGAGGC 210
********* **************************************************
consensus_13299#0 GGCGGCGGCGCCGCAGCGAAGTCGTACAGCTTCAACGGGCCAAGCGCCCGCGATGACCCG 300
consensus_13299#1 GGCG-------------------------------------------------------- 196
consensus_13299#2 GNCNGGC----------------------------------------------------- 217
* *
consensus_13299#0 GAGGCGAAGCGGCGGCGGCGGGTGGCGGCGTACAACGTGTTCGCGACGCAGGGGAGGCTC 360
consensus_13299#1 ------------------------------TACAACGTGTTCGCGACGCAGGGGAGGCTC 226
consensus_13299#2 ------------------------------GGCCGAANGTTCGGTA-ACAAGCTTTCAAC 246
* ***** * ** * *
consensus_13299#0 AAGTCCACCGTCCG-GAGCAGCTTCAAGTGGATCAAGTCCAAGTTCTCCGACATCCGCTA 419
consensus_13299#1 AAGTCCACCGTCCG-GAGCAGCTTCAAGTGGATCAAGTCCAAGTTCTAAAACATCCGCTA 285
consensus_13299#2 GGGCCAAGCGCCCGCGANTGACCCGGAGCGAAGNGCGGCNGCGGGTGGCGGCGTACAACG 306
* * * ** *** ** * ** * * * * * * * *
consensus_13299#0 CGGTGGCCTCTGAACTGATGAACCTACCCTGCATATATGCATATATACATATATATGATA 479
consensus_13299#1 CGGTGGCCTCTGAACTGATGAACCTACCCTGCATATATGCATATATACATATATATGATA 345
consensus_13299#2 TGTTCGCGAC-GAGGGGAGGCTCA------------------------------------ 329
* * ** * ** ** * *
consensus_13299#0 ATATATCTATCTATGTATGTATACTGCTACATATATGATACAGACTTGCATGCATGCATA 539
consensus_13299#1 ATATATCTATCTATGTATGTATACTGCTACATATATGATACAGACTTGCATGCATGCATA 405
consensus_13299#2 ------------------------------------------------------------
consensus_13299#0 GCTAAATTAAGTTGAAGCTGATATGTGCATGTTTGAGGAGCTATGATGAACTGTGTGTGT 599
consensus_13299#1 GCTAAATTAAGTTGAAGCTGATATGTGCATGTTTGAGGAGCTATGATGAACTGTGTGTGT 465
consensus_13299#2 ------------------------------------------------------------
consensus_13299#0 GAGTGATCTACTGATCTTGAGTTGCCTTATGAAGTTATGGTCAACTGCCAGATCGGTGCT 659
consensus_13299#1 GAGTGATCTACTGATCTTGAGTTGCCTTATGAAGTTATGGTCAACTGCCAGATCGGTGCT 525
consensus_13299#2 ------------------------------------------------------------
consensus_13299#0 ATGTGTTTTCACTTTTTTTTTTGGGTCTTATGAGTTGAGAAAGAAGAGGGGGAGGAATTT 719
consensus_13299#1 ATGTGTTTTCACTTTTTTTTTTGGGTCTTATGAGTTGAGAAAGAAGAGGGGGAGGAATTT 585
consensus_13299#2 ------------------------------------------------------------
consensus_13299#0 GAAGAACTTGCAGGGGTTGGATCCTGCTTAATTTG-AAATTAAGTTGGGTTCACCTAAAA 778
consensus_13299#1 GAAGAACTTGCAGTGGTTGTATCCTGCTTAATTTGCAAATTAAGTTGTATCAACTATCAA 645
consensus_13299#2 ------------------------------------------------------------
consensus_13299#0 AAAAAAAA----------AAAAAAAAAAAAACCTCGGGGGGGGCCCGGGCCCATTCCGCC 828
consensus_13299#1 GCCATGTCCTCTGTTTCTAAAAAAAAAAAAA----------------------------- 676
consensus_13299#2 ------------------------------------------------------------
consensus_13299#0 TAATGAGGTGGATTCCCGCCCTCCTGCGCGGGTTAAAACGTGTGGCTGGAAACCCTGGGT 888
consensus_13299#1 ------------------------------------------------------------
consensus_13299#2 ------------------------------------------------------------
consensus_13299#0 TCCAATTATGGCTGAAGCAATCCCTTTGCGTTGGTATGCGAAGAGCCCCCACCCCTCCAC 948
consensus_13299#1 ------------------------------------------------------------
consensus_13299#2 ------------------------------------------------------------
consensus_13299#0 GGTGACCCTAAGGAGTGACCCCCTGACGGATTACCCGGGGGGGGGTCCCGGAACGCAC 1006
consensus_13299#1 ----------------------------------------------------------
consensus_13299#2 ----------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||