These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13304#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1869 fasta sequence [GGACGCGCCGGCGTCGGGCATCACGGTCGTGTCGAGACAGGACGTGCGCCCGGACGGCGCTTCGGCGGTCGGGGACCTCACGCTGTCCGTCTCCGACCTGCCCATGCTGTCGTGCCACTACATCCAGAAGGGCCTCTTCTTCCCCGCCCCCGACGTGCCCATGGCTTCCCTGGTTTCGTTGCTCATGTCTTCGCTGTCTCGGGCGCTCGCCATCTTCCCGACCCTCGCCGGCCGCCTTGTCACGCTCCCCGATGATCGCGTCGTCATCCGCTGCAACGACGCCGGCGTCGAGTTCCGCCACGCCGTCGCGCCCAACCTGTCGCTGGATGACTTCATCGTGCCCGACGCCGACGTCCCGACCAAGCTGACCAAGGACCTGTTCCCCATGGACCGCACCGTGAGCTACGACGGCCACCGCCGCCCGCTCACGTCGTTCCAGGTCACCGTGCTCGGCGACGGCGCCGTGTTCATCGGCATCGTCGCGAACCACGCCGTGGTGGACGGGACCTCCTTTTGGCACTTCTTTAATACATGGGCCGCCCTTTGCCGTGGCGCGTCACCCAAGCTGCCGGACTTCCGCCGCAGCTTTTTTGGCGAGTCAACCGCCGTCCTCCGCTTTCCAGGAGGCGTGGGCCCCGCCGTGACCTTCGACGCGGACGCGCCTCTCCGCGAGCGCGTCTTTCACTTCAGCGCGGATGCGATTCGCGAGCTCAAGGCAATCACTAACCGTCGCCCGAGCGGCGGTCAAGACGCCGAGGTCTACGGCAAGATGGCGCACGATCGGAAGAATCCCGAAGGGCTCAGTGCGATCTCGTCGTTCCAGTCACTGTGCGCGCAGATATGGCTCTCGGTGACGCGCGCGCGGCAGCGTCTGGCGCCCGACGCGACGAGCACGTTCCGCATGGCGGTGAACTGCCGGCACAGGCTGCGCCCGGCGATCTCCCCTGTGTACTTCGGCAACGCCATCCAGAGCGCAGCAACCACGGCCACGGTGGCCGAGCTGGCGTCCAACGACCTGCGGTGGGCGGCGGCCAAGCTCAACGCGAGCCTGGCGGCGTACGACGACGGCGCGATACGCCGCGCCGCGGCGGCGT-GGC-AGGGCGCTCCCCGGTGCTTCCCGCTGGGCAACCCGGACGGCGCGGTGATCACGATGGGGAGCTCGAACCGGTTCCCCATGTATGAGGGCAACGACTTCGGGTGGGGCCGCCCCCTCGCGGTGCGGAGCGGCCGCGCCAACAAGTTCGATGGCAAGATGTCGGCGTTCCCTGCCCGCGCCGGGGACGGCAGCGTGGACATCGAGGTGTGCCTCGCCCCCGACACCATGGCGGCGCTGCTCCGCGACAGCGAGTTCATGCAGTTCGTGTCGTGATCGTTCCGCCAGTGCGTGCGCGAGCGCGCGCGCGACTATTGGTCCATCGTGACACACATGCCGTTGCGCTGCGGCTTTGCGTCCGTTCCTGCCCATAGTTTGGTCCTTTGGTGCTAAGATAATGTATCCGTGTTCTGGTTGTGCAGTGCCAGCGTGCCGTGGCAGTAGTAGACAGTGGTAACTAGTAGTAGTACTTGGATTGACTAGCTGTTACTATTACTTGTAACTACTCCAGCAAGCATTGGCGCGTTGCAGGGGGGATGGAGCTCGTGAAACTGCTTGATTGCTAAAGTCTTCCGGGCGTTCAAGTACGATGAACCGATTAATTTGCGTTTGATTAGGATGGATTTACCTTTTCCTTAGGACAGTCTCAACCCATGATGTGCATAAGTAGTGTCTATGGTGCTGTGTCAATAAGACATCACAATAGAAACTGCATTCTACAACCACCATGGTTGGTTTTTTAAAGTGGGCCATTAATAAATACAACATCTCTCTTC] [+] EMBL AK070440 [GGACGCGCCGGCGTCGGGCATCACGGTCGTGTCGAGACAGGACGTGCGCCCGGACGGCGCTTCGGCGGTCGGGGACCTCACGCTGTCCGTCTCCGACCTGCCCATGCTGTCGTGCCACTACATCCAGAAGGGCCTCTTCTTCCCCGCCCCCGACGTGCCCATGGCTTCCCTGGTTTCGTTGCTCATGTCTTCGCTGTCTCGGGCGCTCGCCATCTTCCCGACCCTCGCCGGCCGCCTTGTCACGCTCCCCGATGATCGCGTCGTCATCCGCTGCAACGACGCCGGCGTCGAGTTCCGCCACGCCGTCGCGCCCAACCTGTCGCTGGATGACTTCATCGTGCCCGACGCCGACGTCCCGACCAAGCTGACCAAGGACCTGTTCCCCATGGACCGCACCGTGAGCTACGACGGCCACCGCCGCCCGCTCACGTCGTTCCAGGTCACCGTGCTCGGCGACGGCGCCGTGTTCATCGGCATCGTCGCGAACCACGCCGTGGTGGACGGGACCTCCTTTTGGCACTTCTTTAATACATGGGCCGCCCTTTGCCGTGGCGCGTCACCCAAGCTGCCGGACTTCCGCCGCAGCTTTTTTGGCGAGTCAACCGCCGTCCTCCGCTTTCCAGGAGGCGTGGGCCCCGCCGTGACCTTCGACGCGGACGCGCCTCTCCGCGAGCGCGTCTTTCACTTCAGCGCGGATGCGATTCGCGAGCTCAAGGCAATCACTAACCGTCGCCCGAGCGGCGGTCAAGACGCCGAGGTCTACGGCAAGATGGCGCACGATCGGAAGAATCCCGAAGGGCTCAGTGCGATCTCGTCGTTCCAGTCACTGTGCGCGCAGATATGGCTCTCGGTGACGCGCGCGCGGCAGCGTCTGGCGCCCGACGCGACGAGCACGTTCCGCATGGCGGTGAACTGCCGGCACAGGCTGCGCCCGGCGATCTCCCCTGTGTACTTCGGCAACGCCATCCAGAGCGCAGCAACCACGGCCACGGTGGCCGAGCTGGCGTCCAACGACCTGCGGTGGGCGGCGGCCAAGCTCAACGCGAGCCTGGCGGCGTACGACGACGGCGCGATACGCCGCGCCGCGGCGGCGT GGC AGGGCGCTCCCCGGTGCTTCCCGCTGGGCAACCCGGACGGCGCGGTGATCACGATGGGGAGCTCGAACCGGTTCCCCATGTATGAGGGCAACGACTTCGGGTGGGGCCGCCCCCTCGCGGTGCGGAGCGGCCGCGCCAACAAGTTCGATGGCAAGATGTCGGCGTTCCCTGCCCGCGCCGGGGACGGCAGCGTGGACATCGAGGTGTGCCTCGCCCCCGACACCATGGCGGCGCTGCTCCGCGACAGCGAGTTCATGCAGTTCGTGTCGTGATCGTTCCGCCAGTGCGTGCGCGAGCGCGCGCGCGACTATTGGTCCATCGTGACACACATGCCGTTGCGCTGCGGCTTTGCGTCCGTTCCTGCCCATAGTTTGGTCCTTTGGTGCTAAGATAATGTATCCGTGTTCTGGTTGTGCAGTGCCAGCGTGCCGTGGCAGTAGTAGACAGTGGTAACTAGTAGTAGTACTTGGATTGACTAGCTGTTACTATTACTTGTAACTACTCCAGCAAGCATTGGCGCGTTGCAGGGGGGATGGAGCTCGTGAAACTGCTTGATTGCTAAAGTCTTCCGGGCGTTCAAGTACGATGAACCGATTAATTTGCGTTTGATTAGGATGGATTTACCTTTTCCTTAGGACAGTCTCAACCCATGATGTGCATAAGTAGTGTCTATGGTGCTGTGTCAATAAGACATCACAATAGAAACTGCATTCTACAACCACCATGGTTGGTTTTTTAAAGTGGGCCATTAATAAATACAACATCTCTCTTC] [+] EMBL C73720 [ CGACGAGCACGTTCCGCATGGCGGTGAACTGCCGGCACAGGCTGCGCCCGGCGATCTCCCCTGTGTACTTCGGCAACGCCATCCAGAGCGCA NAACCACGGCCACGGTGGCCGAGCTGGCGTCCAACGACCTGCGGTGGGCGGCGGCCAAGCTCAACGCGAGCCTGGCGGCGTACGACGACGGCGCGATACGCCGCGCCGCGG GNCGTNGGCAAGGGCGCTCCCCGGTGCTTCCCGTTGGGCAACCCGGACGGCGCGGTGATCACGATGGGGAGTTCGAACCGGTT CCCATGTATGAGGG AACGNTTTCGGGTTGGGCCG CCCCTCGCGGTTCGGAGGGGCCGCaaccgn ] consensusID : consensus_13304#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1868 fasta sequence [CTTCTACGACGCCGGCTCGCCCCTCGCCCCTCGCTTGAACGCTTAGAGATACAGTTTTTG-CCGCGCTAGTTGATCCCTCCTGCATTCGCACCATGGTGGAGGCTGCCTCGGCTGCGCCGGCGACGGTGGTCGTTCCGCTGACGCAGACGCTCTGCGCGAATGCGCCTGCGACGAGCGTCACCGTCGTTTCGAAGCAGACCGTTCGGCCCGACGGCGCGTCGGCGGTTGGAGACGTCAAGCTCTCGGTCTCCGACATGCCGATGCTGTCGTGCCACTACATCCAGAAGGGGCTCTTCTTCCCGCCCCCTGGCGTGCCGATCGCCTCCC-TCGTGTCGTCGCTCGTGTGCGCGCTCTCCCGGGCGCTCGCGGTGTTCCCTG-CCCTCGCC-GGCCGGCT-CG-TC-ACGCT-GGATG-AT-GGCCGCATC-GTC-AT-CCGGTGCGACGGCGTGGCCG-TTGAGTTCTACC-ACGCGGTCGCGCCCGCTCTGTCGCTGGGAGACTTCCTCGTGCCCAACGCCGACGTGCCGACCAGGCTGACGAAGGATTTGTTCCCCATGGACCGCACCGTGAGCTACGACGGCCACCGCCGTCCGCTCACCTCGTTCCAGCTCACCGTGCTCGGCGATGGAGCTGTCTTCGTCGGCTTCGTCGCTAACCACGCCGTCGTGGACGGCACCTCCTTCTGGCACTTCTTTAACACGTGGGCAGGTCTCTGCCGCGGCACGCCGGTCCAGCCGCCGGACTTGCGCCGGAACTTCTTTGGCGACTCCACGGCCGTCATCCGCTTCCCCGGTGGCGCGGGTCCTGCCGTCACCTTCGACGCCGACGCGCCCCTCCGCGAGCGAGTCCTCCATTTCAGCGCCGCCGCCATTCGCGAGCTGAAGGCCAAGGCCAACCAGTGGAAAAGATCCGACAAATTTGCCGAGGCTAACGGGAAGCATGTGGATGAAACGAAGGCTCATGGCGGTTACAGAGAGATCTCGTCGTTCCAATCGCTGTGCGCGCATATCTGGAGGGCGGTGACGCGATCCCGGCGGCTGCTGGCGGCCGACGCGACCACGACGTTCCGCATGGCGGTGAACTGCCGGCACCGCCTGCGCCCGGCGATCTCCCCGCTCTACTTCGGCAACGCCATCCAGAGCGTAGCCACAACCGCGACGGTGGCCGAGCTGGCGTCCAACGACCTGCGGTGGGCGGCGGCCAGGCTGAACGCGACCGTGGTGGCGCACGAGGACGGCGCCATCCGCCGGGCCGCGGCGGAGTGGGAGGCCGCGCCGCGGTGCTTCCCGCTGGGCAACCCCGACGGCGCGGCGCTCACGATGGGGAGCTCGCCCCGGTTCCCTATGTACGACGGCAACGACTTCGGGTGGGGCAGGGCGATCGCCGTGCGGAGCGGGCGCGCCAACAAGTTCGACGGCAAGATGTCGGCGTTCCCGAGCCAGGCTGGGGACGGCAGCGTCGACGTCGAGTTTTGCCTCGCGCCCGACACCATGGCCCGCCTGCTCGGTGACCACGAGTTCTTGCAGTACGTGTCGCGTGCACCGTGACGCACGTATTCTGGTGTGGTGCAGTGAGCGAGGGGACGATCACGAGATGCGAGTTCCCCACATGACATGATTATCTCTCTGGTGGTGATGCAGATTGCAGTAGCCGCTGGACACATACGTTGCTGTGCTGGATTGGTGTATGCTTGCAAAAATATCTAAGCTATATATCCGAGTATCCGTTACTCTTCTGGTATTCCATCCATTAAGCGGTTGGCCAAGTTTGAACAGCCGCACAGAGAGTTGCTTTTAGGATCAAGTGGAGTCGTGCTCTGTTCCTTCCTCCCTGTTAGAAGTACTTGTCTTGTGAGTTCGATGGATAATTATTTGAGTACA] [+] EMBL AK072009 [CTTCTACGACGCCGGCTCGCCCCTCGCCCCTCGCTTGAACGCTTAGAGATACAGTTTTTG CCGCGCTAGTTGATCCCTCCTGCATTCGCACCATGGTGGAGGCTGCCTCGGCTGCGCCGGCGACGGTGGTCGTTCCGCTGACGCAGACGCTCTGCGCGAATGCGCCTGCGACGAGCGTCACCGTCGTTTCGAAGCAGACCGTTCGGCCCGACGGCGCGTCGGCGGTTGGAGACGTCAAGCTCTCGGTCTCCGACATGCCGATGCTGTCGTGCCACTACATCCAGAAGGGGCTCTTCTTCCCGCCCCCTGGCGTGCCGATCGCCTCCC TCGTGTCGTCGCTCGTGTGCGCGCTCTCCCGGGCGCTCGCGGTGTTCCCTG CCCTCGCC GGCCGGCT CG TC ACGCT GGATG AT GGCCGCATC GTC AT CCGGTGCGACGGCGTGGCCG TTGAGTTCTACC ACGCGGTCGCGCCCGCTCTGTCGCTGGGAGACTTCCTCGTGCCCAACGCCGACGTGCCGACCAGGCTGACGAAGGATTTGTTCCCCATGGACCGCACCGTGAGCTACGACGGCCACCGCCGTCCGCTCACCTCGTTCCAGCTCACCGTGCTCGGCGATGGAGCTGTCTTCGTCGGCTTCGTCGCTAACCACGCCGTCGTGGGCGGCACCTCCTTCTGGCACTTCTTTAACACGTGGGCAGGTCTCTGCCGCGGCACGCCGGTCCAGCCGCCGGGCTTGCGCCGGAACTTCTTTGGCGACTCCACGGCCGTCATCCGCTTCCCCGGTGGCGCGGGTCCTGCCGTCACCTTCGACGCCGACGCGCCCCTCCGCGAGCGAGTCCTCCATTTCAGCGCCGCCGCCATTCGCGAGCTGAAGGCCAAGGCCAACCAGTGGAAAAGATCCGACAAATTTGCCGAGGCTAACGGGAAGCATGTGGATGAAACGAAGGCTCATGGCGGTTACAGAGAGATCTCGTCGTTCCAATCGCTGTGCGCGCATATCTGGAGGGCGGTGACGCGATCCCGGCGGCTGCTGGCGGCCGACGCGACCACGACGTTCCGCATGGCGGTGAACTGCCGGCACCGCCTGCGCCCGGCGATCTCCCCGCTCTACTTCGGCAACGCCATCCAGAGCGTAGCCACAACCGCGACGGTGGCCGAGCTGGCGTCCAACGACCTGCGGTGGGCGGCGGCCAGGCTGAACGCGACCGTGGTGGCGCACGAGGACGGCGCCATCCGCCGGGCCGCGGCGGAGTGGGAGGCCGCGCCGCGGTGCTTCCCGCTGGGCAACCCCGACGGCGCGGCGCTCACGATGGGGAGCTCGCCCCGGTTCCCTATGTACGACGGCAACGACTTCGGGTGGGGCAGGGCGATCGCCGTGCGGAGCGGGCGCGCCAACAAGTTCGACGGCAAGATGTCGGCGTTCCCGAGCCAGGCTGGGGACGGCAGCGTCGACGTCGAGTTTTGCCTCGCGCCCGACACCATGGCCCGCCTGCTCGGTGACCACGAGTTCTTGCAGTACGTGTCGCGTGCACCGTGACGCACGTATTCTGGTGTGGTGCAGTGAGCGAGGGGACGATCACGAGATGCGAGTTCCCCACATGACATGATTATCTCTCTGGTGGTGATGCAGATTGCAGTAGCCGCTGGACACATACGTTGCTGTGCTGGATTGGTGTATGCTTGCAAAAATATCTAAGCTATATATCCGAGTATCCGTTACTCTTCTGGTATTCCATCCATTAAGCGGTTGGCCAAGTTTGAACAGCCGCACAGAGAGTTGCTTTTAGGATCAAGTGGAGTCGTGCTCTGTTCCTTCCTCCCTGTTAGAAGTACTTGTCTTGTGAGTTCGATGGATAATTATTTGAG ] [+] EMBL AK107567 [ TTCTACGACGCCGGCTCGCCCCTCGCCCCTCGCTTGAACGCTTAGAGATACAGTTTTTG CCGCGCTAGTTGATCCCTCCTGCATTCGCACCATGGTGGAGGCTGCCTCGGCTGCGCCGGCGACGGTGGTCGTTCCGCTGACGCAGACGCTCTGCGCGAATGCGCCTGCGACGAGCGTCACCGTCGTTTCGAAGCAGACCGTTCGGCCCGACGGCGCGTCGGCGGTTGGAGACGTCAAGCTCTCGGTCTCCGACATGCCGATGCTGTCGTGCCACTACATCCAGAAGGGGCTCTTCTTCCCGCCCCCTGGCGTGCCGATCGCCTCCC TCGTGTCGTCGCTCGTGTGCGCGCTCTCCCGGGCGCTCGCGGTGTTCCCTG CCCTCGCC GGCCGGCT CG TC ACGCT GGATG AT GGCCGCATC GTC AT CCGGTGCGACGGCGTGGCCG TTGAGTTCTACC ACGCGGTCGCCCCCGCTCTGTCGCTGGGAGACTTCCTCGTGCCCAACGCCGACGTGCCGACCAGGCTGACGAAGGATTTGTTCCCCATGGACCGCACCGTGAGCTACGACGGCCACCGCCGTCCGCTCACCTCGTTCCAGCTCACCGTGCTCGGCGATGGAGCTGTCTTCGTCGGCTTCGTCGCTAACCACGCCGTCGTGGACGGCACCTCCTTCTGGCACTTCTTTAACACGTGGGCAGGTCTCTGCCGCGGCACGCCGGTCCAGCCGCCGGACTTGCGCCGGAACTTCTTTGGCGACTCCACGGCCGTCATCCGCTTCCCCGGTGGCGCGGGTCCTGCCGTCACCTTCGACGCCGACGCGCCCCTCCGCGAGCGAGTCCTCCATTTCAGCGCCGCCGCCATTCGCGAGCTGAAGGCCAAGGCCAACCAGTGGAAAAGATCCGACAAATTTGCCGAGGCTAACGGGAAGCATGTGGATGAAACGAAGGCTCATGGCGGTTACAGAGAGATCTCGTCGTTCCAATCGCTGTGCGCGCATATCTGGAGGGCGGTGACGCGATCCCGGCGGCTGCTGGCGGCCGACGCGACCACGATGTTCCGCATGGCGGTGAACTGCCGGCACCGCCTGCGCCCGGCGATCTCCCCGCTCTACTTCGGCAACGCCATCCAGAGCGTAGCCACAACCGCGACGGTGGCCGAGCTGGCGTCCAACGACCTGCGGTGGGCGGCGGCCAGGCTGAACGCGACCGTGGTGGCGCACGAGGACGGCGCCATCCGCCGGGCCGCGGCGGAGTGGGAGGCCGCGCCGCGGTGCTTCCCGCTGGGCAACCCCGACGGCGCGGCGCTCACGATGGGGAGCTCGCCCCGGTTCCCTATGTACGACGGCAACGACTTCGGGTGGGGCAGGGCGATCGCCGTGCGGAGCGGGCGCGCCAACAAGTTCGACGGCAAGATGTCGGCGTTCCCGAGCCAGGCTGGGGACGGCAGCGTCGACGTCGAGTTTTGCCTCGCGCCCGACACCATGGCCCGCCTGCTCGGTGACCACGAGTTCTTGCAGTACGTGTCGCGTGCACCGTGACGCACGTATTCTGGTGTGGTGCAGTGAGCGAGGGGACGATCACGAGATGCGAGTTCCCCACATGACATGATTATCTCTCTGGTGGTGATGCAGATTGCAGTAGCCGCTGGACACATACGTTGCTGTGCTGGATTGGTGTATGCTTGCAAAAATATCTAAGCTATATATCCGAGTATCCGTTACTCTTCTGGTATTCCATCCATTAAGCGGTTGGCCAAGTTTGAACAGCCGCACAGAGAGTTGCTTTTAGGATCAAGTGGAGTCGTGCTCTGTTCCTTCCTCCCTGTTAGAAGTACTTGTCTTGTGAGTTCGATGGATAATTATTTGAGTACA] [+] EMBL AU222843 [ CGCCCCTCGCTTGAACGCTTAGAGATACAGTTTTTGCCCGCGCTAGTTGATCCCTCCTGCATTCGCACCATGGTGGAGGCTGCCTCGGCTGCGCCGGCGACGGTGGTCGTTCCGCTGACGCAGACGCTCTGCGCGAATGCGCCTGCGACGAGCGTCACCGTCGTTTCGAAGCAGACCGTTCGGCCCGACGGCGCGTCGGCGGTTGGAGACGTCAAGCTCTCGGTCTCCGACATGCCGATGCTGTCGTGCCACTACATCCAGAAGGGGCTCTTCTTCCCGCCCCCTGGCGTGCCGATCGCCTCCC TCGTGTCGTCGCTCGTGTGCGCGCTCTCCCGGGCGCTCGCGGTGTTCCCTG CCCTCGCC GGCCGGCT CG TC ACGCT GGATG AT GGCCGCATC GTC AT CCGGTGCGACGGCGTGGCCG TTGAGTTCTACCTCCGCGGNCGGCCCCGTTCTGTng ] [+] EMBL AU029721 [ AACGCTTAGAGATACAGTTTTTG CCGCGCTAGTTGATCCCTCCTGCATTCGCACCATGGTGGAGGCTGCCTCGGCTGCGCGGACGACGGTGGTCGTTCCGCTGACGCAGACGCTCTGCGCGAATGCNCCTGCGACGAGCGTCACCGTCGTTTCGAAGCAGACCGTTCGGCCCGACGGCGCGTCGGCGGTTGGAGACGTCAAGCTCTCGGTCTCCGACATGCCGATGCTGTCGTGCCACTACATCCAGAAGGGGCTCTTCTTCCCGCCCCCTGGCGTGCCGATCGCCTCCCTTCGTGTCGTCGCTCGTGTGCGCGCTCTCCCGGGCGCTCGCGGTGTTCCCTGCCCCTCGCCGGGCCGGGTNCGTTCAAGGCTGGGATGAATGGGCCGCATCGGTCAATCCCGGTGCGANGGCGTGGCCGTTTGAGTTCTAa ] [+] EMBL CB649320 [ ACGCTCTGCGCGAATGCGCCTGCGACGAGCGTCACCGTCGTTTCGAAGCAGACCGTTCGGCCCGACGGCGCGTCGGCGGTTGGAGACGTCAAGCTCTCGGTCTCCGACATGCCGATGCTGTCGTGCCACTACATCCAGAAGGGGCTCTTCTTCCCGCCCCCTGGCGTGCCGATCGCCTCCC TCGTGTCGTCGCTCGTGTGCGCGCTCTCCCGGGCGCTCGCGGTGTTCCCTG CCCTCGCC GGCCGGCT CG TC ACGCT GGATG AT GGCCGCATC GTC AT CCGGTGCGACGGCGTGGCCG TTGAGTTCTACC ACGCGGTCGCGCCCGCTCTGTCGCTGGGAGACTTCCTCGTGCCCAACGCCGACGTGCCGACCAGGCTGACGAAGGATTTGTTCCCCATGGACCGCACCGTGAGCTACGACGGCCACCGCCGTCCGCTCACCTCGTTCCAGCTCACCGTGCTCGGCGATGGAGCTGTCTTCGTCGGCTTCGTCGCTAACCACGCCGTCGTGGACGGCACCTCCTTCTGGCACTTCTTTAACACGTGGGCAGGTCTCTGCCGCGGCACGCCGGTCCAGCCGCCGGACTTGCGCCGGAACTTCTTTGGCGACTCCACGGCCGTCATCCGCTTCCCCGGTGGCGCGGGTCCTGCCGTCACCTTCGACGCCGACGCGCCCCTCCGCGAGCGAGTCCTCCATTTCAGCGCCGCCGCCATTCGCGAGCTGAAGGGCCAGGCCAACCAGTGGAAAAGATCCGACAAATTTGCCG ] [+] EMBL CB647388 [ ACGCTCTGCGCGAATGCGCCTGCGACGAGCGTCACCGTCGTTTCGAAGCAGACCGTTCGGCCCGACGGCGCGTCGGCGGTTGGAGACGTCAAGCTCTCGGTCTCCGACATGCCGATGCTGTCGTGCCACTACATCCAGAAGGGGCTCTTCTTCCCGCCCCCTGGCGTGCCGATCGCCTCCC TCGTGTCGTCGCTCGTGTGCGCGCTCTCCCGGGCGCTCGCGGTGTTCCCTG CCCTCGCC GGCCGGCT CG TC ACGCT GGATG AT GGCCGCATC GTC AT CCGGTGCGACGGCGTGGCCG TTGAGTTCTACC ACGCGGTCGCGCCCGCTCTGTCGCTGGGAGACTTCCTCGTGCCCAACGCCGACGTGCCGACCAGGCTGACGAAGGATTTGTTCCCCATGGACCGCACCGTGAGCTACGACGGCCACCGCCGTCCGCTCACCTCGTTCCAGCTCACCGTGCTCGGCGATGGAGCTGTCTTCGTCGGCTTCGTCGCTAACCACGCCGTCGTGGACGGCACCTCCTTCTGGCACTTCTTTAACACGTGGGCAGGTCTCTGCCGCGGCACGCCGGTCCAGCCGCCGGACTTGCGCCGGAACTTCTTTGGCGACTCCACGGCCGTCATCCGCTTCCCCGGTGG ] [-] EMBL CB649321 [ CAACCAGTGGAAAAGATCCGACAAATTTGCCGAGGCTAACGGGAAGCATGTGGATGAAACGAAGGCTCATGGCGGTTACAGAGAGATCTCGTCGTTCCAATCGCTGTGCGCGCATATCTGGAGGGCGGTGACGCGATCCCGGCGGCTGCTGGCGGCCGACGCGACCACGACGTTCCGCATGGCGGTGAACTGCCGGCACCGCCTGCGCCCGGCGATCTCCCCGCTCTACTTCGGCAACGCCATCCAGAGCGTAGCCACAACCGCGACGGTGGCCGAGCTGGCGTCCAACGACCTGCGGTGGGCGGCGGCCAGGCTGAACGCGACCGTGGTGGCGCACGAGGACGGCGCCATCCGCCGGGCCGCGGCGGAGTGGGAGGCCGCGCCGCGGTGCTTCCCGCTGGGCAACCCCGACGGCGCGGCGCTCACGATGGGGAGCTCGCCCCGGTTCCCTATGTACGACGGCAACGACTTCGGGTGGGGCAGGGCGATCGCCGTGCGGAGCGGGCGCGCCAACAAGTTCGACGGCAAGATGTCGGCGTTCCCGAGCCAGGCTGGGGACGGCAGCGTCGACGTCGAGTTTTGCCTCGCGCCCGACACCATGGCCCGCCTGCTCGGTGACCACGAGTTCTTGCAGTACGTGTCGCGTGCACCGTGACGCACGTATTCTGGTGTGGTGCAGTGAGCGAGGGGACGATCACGAGATGCGAGTTCCCCACATGACATGATTATCTCTCTGGTGGTGATGCAGATTGCAGTAGCCGCTGGACACATACGTTGCTGTGCTGGATTGGTGTATGCTTGCAAAAATATCTAAGCTATATATCCGA ] [-] EMBL CB647389 [ GTGGATGAAACGAAGGCTCATGGCGGTTACAGAGAGATCTCGTCGTTCCAATCGCTGTGCGCGCATATCTGGAGGGCGGTGACGCGATCCCGGCGGCTGCTGGCGGCCGACGCGACCACGACGTTCCGCATGGCGGTGAACTGCCGGCACCGCCTGCGCCCGGCGATCTCCCCGCTCTACTTCGGCAACGCCATCCAGAGCGTAGCCACAACCGCGACGGTGGCCGAGCTGGCGTCCAACGACCTGCGGTGGGCGGCGGCCAGGCTGAACGCGACCGTGGTGGCGCACGAGGACGGCGCCATCCGCCGGGCCGCGGCGGAGTGGGAGGCCGCGCCGCGGTGCTTCCCGCTGGGCAACCCCGACGGCGCGGCGCTCACGATGGGGAGCTCGCCCCGGTTCCCTATGTACGACGGCAACGACTTCGGGTGGGGCAGGGCGATCGCCGTGCGGAGCGGGCGCGCCAACAAGTTCGACGGCAAGATGTCGGCGTTCCCGAGCCAGGCTGGGGACGGCAGCGTCGACGTCGAGTTTTGCCTCGCGCCCGACACCATGGCCCGCCTGCTCGGTGACCACGAGTTCTTGCAGTACGTGTCGCGTGCACCGTGACGCACGTATTCTGGTGTGGTGCAGTGAGCGAGGGGACGATCACGAGATGCGAGTTCCCCACATGACATGATTATCTCTCTGGTGGTGATGCAGATTGCAGTAGCCGCTGGACACATACGTTGCTGTGCTGGATTGGTGTATGCTTGCAAAAATATCTAAGCTATATATCCGA ] [+] EMBL AU029722 [ CCAACAAGTTCGACGGCAAGATGTCGGCGTTCCCGAGCCAGGCTGGGGACGGCANCGTCGACGTCGAGTTTTGCCTCGCGCCCGACACCATGGCCCGCCTGCTCGGTGACCACGAGTTCTTGCAGTACGTGTCGCGTGCACCGTGACGCACGTATTCTGGTGTGGTGCAGTGAGCGAGGGGACGATCACGAGATGCGAGTTCCCCACATGACATGATTATCTCTCTGGTGGTGATGCAGATTGCAGTAGCCGCTGGACACATACGTTGCTGTGCTGGATTGGTGTATGCTTGCAAAAATATCTAAGCTATATATCCGAGTATCCGTTACTNTTNTGGTAaaaa ] consensusID : consensus_13304#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 376 fasta sequence [ANACCGCCTCGGTNGAAATCNCACATATACTTGCGTTTGNCGCNCTAGTTNATCTCTATTGCTTTTGGATGATGGGTGGGAAGCTGCCTCCATTGGGCCGGCAACGGTGGTCGTTCCAGTAGACGCAGACACTCTGCGCGAATGCGCCTGCGANGAGCGTCACCGTCGTTTCNAAGCAGACCGTTCGGCCCGACGGCGCGTCGGCGGTTGGAGACGTNAAGCTCTCGGTCTCCGACATGCCGATGCTGTCGTGCCACTACATNCAGAAGGGGGCTCTTTCTTCCCGCCCCATGGCGGTGCCGATCGCCCTCCCTCGAGTAGGCCGCTCGNGTGCGCGCTTCTCCNGGGGCGCTCGGAGGTGTTCCNTGGCCCTCGC] [+] EMBL AU197667 [ANACCGCCTCGGTNGAAATCNCACATATACTTGCGTTTGNCGCNCTAGTTNATCTCTATTGCTTTTGGATGATGGGTGGGAAGCTGCCTCCATTGGGCCGGCAACGGTGGTCGTTCCAGTAGACGCAGACACTCTGCGCGAATGCGCCTGCGANGAGCGTCACCGTCGTTTCNAAGCAGACCGTTCGGCCCGACGGCGCGTCGGCGGTTGGAGACGTNAAGCTCTCGGTCTCCGACATGCCGATGCTGTCGTGCCACTACATNCAGAAGGGGGCTCTTTCTTCCCGCCCCATGGCGGTGCCGATCGCCCTCCCTCGAGTAGGCCGCTCGNGTGCGCGCTTCTCCNGGGGCGCTCGGAGGTGTTCCNTGGCCCTCGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13304#1 CTTCTACGACGCCGGCTCGCCCCTCGCCCCTCGCTTGAACGCTTAGAGATACA-GTTTTT 59 consensus_13304#2 ----------------------ANACCGCCTCGGTNGAAATCNCACATATACTTGCGTTT 38 consensus_13304#0 ------------------------------------------------------------ consensus_13304#1 GCCGCGCTAGTTGATCCCTCCTGCATTCGCACCATGGT--GGAGGCTGCCTCGGCTGCGC 117 consensus_13304#2 GNCGCNCTAGTTNATCTCTATTGCTTTTGGATGATGGGTGGGAAGCTGCCTCCATTGGGC 98 consensus_13304#0 ------------------------------------------------------------ consensus_13304#1 CGGCGACGGTGGTCGTTCCGCT-GACGCAGACGCTCTGCGCGAATGCGCCTGCGACGAGC 176 consensus_13304#2 CGGCAACGGTGGTCGTTCCAGTAGACGCAGACACTCTGCGCGAATGCGCCTGCGANGAGC 158 consensus_13304#0 -----------------------------------------GGACGCGCCGGCGTCGGGC 19 * * ***** *** * ** consensus_13304#1 GTCACCGTCGTTTCGAAGCAGACCGTTCGGCCCGACGGCGCGTCGGCGGTTGGAGACGTC 236 consensus_13304#2 GTCACCGTCGTTTCNAAGCAGACCGTTCGGCCCGACGGCGCGTCGGCGGTTGGAGACGTN 218 consensus_13304#0 ATCACGGTCGTGTCGAGACAGGACGTGCGCCCGGACGGCGCTTCGGCGGTCGGGGACCTC 79 **** ***** ** * *** *** ** ** ******** ******** ** *** * consensus_13304#1 AAGCTCTCGGTCTCCGACATGCCGATGCTGTCGTGCCACTACATCCAGAAGGGG--CTCT 294 consensus_13304#2 AAGCTCTCGGTCTCCGACATGCCGATGCTGTCGTGCCACTACATNCAGAAGGGGGCTCTT 278 consensus_13304#0 ACGCTGTCCGTCTCCGACCTGCCCATGCTGTCGTGCCACTACATCCAGAAGGGC--CTCT 137 * *** ** ********* **** ******************** ******** * consensus_13304#1 TCTTCCCGCCCCCTGGCG-TGCCGATCGCC-TCCCTCGTGTCG-TCGCTCGTGTGCGCGC 351 consensus_13304#2 TCTTCCCGCCCCATGGCGGTGCCGATCGCCCTCCCTCGAGTAGGCCGCTCGNGTGCGCGC 338 consensus_13304#0 TCTTCCCCGCCCCCGACG-TGCCCATGGCT-TCCCTGGTTTCG-TTGCTCATGTCTTCGC 194 ******* *** * ** **** ** ** ***** * * * **** ** *** consensus_13304#1 TCTCCCGGG--CGCTCGC-GGTGTTCCCTG-CCCTCGCCGGCCGGCTCGTCACGCTGGAT 407 consensus_13304#2 TTCTCCNGGGGCGCTCGGAGGTGTTCCNTGGCCCTCGC---------------------- 376 consensus_13304#0 TGTCTCGGG--CGCTCGC-CATCTTCCC-GACCCTCGCCGGCCGCCTTGTCACGCTCCCC 250 * * ** ****** * **** * ******* consensus_13304#1 GATGGCCGCATCGTCATCCGGTGCGACGGCGTGGCCGTTGAGTTCTACCACGCGGTCGCG 467 consensus_13304#2 ------------------------------------------------------------ consensus_13304#0 GATGATCGCGTCGTCATCCGCTGCAACGACGCCGGCGTCGAGTTCCGCCACGCCGTCGCG 310 consensus_13304#1 CCCGCTCTGTCGCTGGGAGACTTCCTCGTGCCCAACGCCGACGTGCCGACCAGGCTGACG 527 consensus_13304#2 ------------------------------------------------------------ consensus_13304#0 CCCAACCTGTCGCTGGATGACTTCATCGTGCCCGACGCCGACGTCCCGACCAAGCTGACC 370 consensus_13304#1 AAGGATTTGTTCCCCATGGACCGCACCGTGAGCTACGACGGCCACCGCCGTCCGCTCACC 587 consensus_13304#2 ------------------------------------------------------------ consensus_13304#0 AAGGACCTGTTCCCCATGGACCGCACCGTGAGCTACGACGGCCACCGCCGCCCGCTCACG 430 consensus_13304#1 TCGTTCCAGCTCACCGTGCTCGGCGATGGAGCTGTCTTCGTCGGCTTCGTCGCTAACCAC 647 consensus_13304#2 ------------------------------------------------------------ consensus_13304#0 TCGTTCCAGGTCACCGTGCTCGGCGACGGCGCCGTGTTCATCGGCATCGTCGCGAACCAC 490 consensus_13304#1 GCCGTCGTGGACGGCACCTCCTTCTGGCACTTCTTTAACACGTGGGCAGGTCTCTGCCGC 707 consensus_13304#2 ------------------------------------------------------------ consensus_13304#0 GCCGTGGTGGACGGGACCTCCTTTTGGCACTTCTTTAATACATGGGCCGCCCTTTGCCGT 550 consensus_13304#1 GGCACGCCGGTCCAGCCGCCGGACTTGCGCCGGAACTTCTTTGGCGACTCCACGGCCGTC 767 consensus_13304#2 ------------------------------------------------------------ consensus_13304#0 GGCGCGTCACCCAAGCTGCCGGACTTCCGCCGCAGCTTTTTTGGCGAGTCAACCGCCGTC 610 consensus_13304#1 ATCCGCTTCCCCGGTGGCGCGGGTCCTGCCGTCACCTTCGACGCCGACGCGCCCCTCCGC 827 consensus_13304#2 ------------------------------------------------------------ consensus_13304#0 CTCCGCTTTCCAGGAGGCGTGGGCCCCGCCGTGACCTTCGACGCGGACGCGCCTCTCCGC 670 consensus_13304#1 GAGCGAGTCCTCCATTTCAGCGCCGCCGCCATTCGCGAGCTGAAGGCCAAGGCCAACCAG 887 consensus_13304#2 ------------------------------------------------------------ consensus_13304#0 GAGCGCGTCTTTCACTTCAGCGCGGATGCGATTCGCGAGCTCAAGGCAATCACTAACCGT 730 consensus_13304#1 TGGAAAAGATCCGACAAATTTGCCGAGGCTAACGGGAAGCATGTGGATGAAACGAAGGCT 947 consensus_13304#2 ------------------------------------------------------------ consensus_13304#0 CGCCCGAGCGGCGGTCAAGACGCCGAGGTCTACGGCAAGATGGCGCACGATCGGAAGAAT 790 consensus_13304#1 CATGGCGGTTACAGAGAGATCTCGTCGTTCCAATCGCTGTGCGCGCATATCTGGAGGGCG 1007 consensus_13304#2 ------------------------------------------------------------ consensus_13304#0 CCCGAAGGGCTCAGTGCGATCTCGTCGTTCCAGTCACTGTGCGCGCAGATATGGCTCTCG 850 consensus_13304#1 GTGACGCGATCCCGGCGGCTGCTGGCGGCCGACGCGACCACGACGTTCCGCATGGCGGTG 1067 consensus_13304#2 ------------------------------------------------------------ consensus_13304#0 GTGACGCGCGCGCGGCAGCGTCTGGCGCCCGACGCGACGAGCACGTTCCGCATGGCGGTG 910 consensus_13304#1 AACTGCCGGCACCGCCTGCGCCCGGCGATCTCCCCGCTCTACTTCGGCAACGCCATCCAG 1127 consensus_13304#2 ------------------------------------------------------------ consensus_13304#0 AACTGCCGGCACAGGCTGCGCCCGGCGATCTCCCCTGTGTACTTCGGCAACGCCATCCAG 970 consensus_13304#1 AGCGTAGCCACAACCGCGACGGTGGCCGAGCTGGCGTCCAACGACCTGCGGTGGGCGGCG 1187 consensus_13304#2 ------------------------------------------------------------ consensus_13304#0 AGCGCAGCAACCACGGCCACGGTGGCCGAGCTGGCGTCCAACGACCTGCGGTGGGCGGCG 1030 consensus_13304#1 GCCAGGCTGAACGCGACCGTGGTGGCGCACGAGGACGGCGCCATCCGCCGGGCCGCGGCG 1247 consensus_13304#2 ------------------------------------------------------------ consensus_13304#0 GCCAAGCTCAACGCGAGCCTGGCGGCGTACGACGACGGCGCGATACGCCGCGCCGCGGCG 1090 consensus_13304#1 GAGTGGGAGGCCGCGCCGCGGTGCTTCCCGCTGGGCAACCCCGACGGCGCGGCGCTCACG 1307 consensus_13304#2 ------------------------------------------------------------ consensus_13304#0 GCGTGGCAGGGCGCTCCCCGGTGCTTCCCGCTGGGCAACCCGGACGGCGCGGTGATCACG 1150 consensus_13304#1 ATGGGGAGCTCGCCCCGGTTCCCTATGTACGACGGCAACGACTTCGGGTGGGGCAGGGCG 1367 consensus_13304#2 ------------------------------------------------------------ consensus_13304#0 ATGGGGAGCTCGAACCGGTTCCCCATGTATGAGGGCAACGACTTCGGGTGGGGCCGCCCC 1210 consensus_13304#1 ATCGCCGTGCGGAGCGGGCGCGCCAACAAGTTCGACGGCAAGATGTCGGCGTTCCCGAGC 1427 consensus_13304#2 ------------------------------------------------------------ consensus_13304#0 CTCGCGGTGCGGAGCGGCCGCGCCAACAAGTTCGATGGCAAGATGTCGGCGTTCCCTGCC 1270 consensus_13304#1 CAGGCTGGGGACGGCAGCGTCGACGTCGAGTTTTGCCTCGCGCCCGACACCATGGCCCGC 1487 consensus_13304#2 ------------------------------------------------------------ consensus_13304#0 CGCGCCGGGGACGGCAGCGTGGACATCGAGGTGTGCCTCGCCCCCGACACCATGGCGGCG 1330 consensus_13304#1 CTGCTCGGTGACCACGAGTTCTTGCAGTACGTGTCGCGTGCACCGTGAC-GCACGTATTC 1546 consensus_13304#2 ------------------------------------------------------------ consensus_13304#0 CTGCTCCGCGACAGCGAGTTCATGCAGTTCGTGTCGTGATCGTTCCGCCAGTGCGTGCGC 1390 consensus_13304#1 TGGTGTGGTGCAGTGAGCGAGGGGACGATCACGAGATGCGAGTTCCCCACATGACATGAT 1606 consensus_13304#2 ------------------------------------------------------------ consensus_13304#0 GAGCGCGCGCGCGACTATTGGTCCATCGTGACACACATGCCGTTGCGCTGCGGCTTTGCG 1450 consensus_13304#1 TATCTCTCTGGTGGTGATGCAGATTGCAGTAGCCGCTGGACACATACGTTGCTGTGCTGG 1666 consensus_13304#2 ------------------------------------------------------------ consensus_13304#0 TCCGTTCCTGCCCATAGTTTGGTCCTTTGGTGCTAAGATAATGTATCCGTGTTCTGGTTG 1510 consensus_13304#1 ATTGGTGTATGCTTGCAAAAATATCTAAGCTATATATCCGAGTATCCGTTACTCTTCTGG 1726 consensus_13304#2 ------------------------------------------------------------ consensus_13304#0 TGCAGTGCCAGCGTGCCGTGGCAG-TAGTAGACAGTGGTAACTAGTAGTAGTACTTGGAT 1569 consensus_13304#1 TATTCCATCCATTAAGCGGTTGGCCAAGTTTGAACAGCCGCACAGAGAGTTGCTTTTAGG 1786 consensus_13304#2 ------------------------------------------------------------ consensus_13304#0 TGACTAGCTGTTACTATTACTTGTAACTACTCCAGCAAGCATTGGCGCGTTGCAGGGGGG 1629 consensus_13304#1 ATCAAGTGGAGTCGTGCTCTGTTCCTTCCTCCCTGTTAGAAGTACTTGTCTTGTGAGTTC 1846 consensus_13304#2 ------------------------------------------------------------ consensus_13304#0 ATGGAGCTCGTGAAACTGCTTGATTGCTAAAGTCTTCCGGGCGTTCAAGTACGATGAACC 1689 consensus_13304#1 GATGGATAATTATTTGAGTACA-------------------------------------- 1868 consensus_13304#2 ------------------------------------------------------------ consensus_13304#0 GATTAATTTGCGTTTGATTAGGATGGATTTACCTTTTCCTTAGGACAGTCTCAACCCATG 1749 consensus_13304#1 ------------------------------------------------------------ consensus_13304#2 ------------------------------------------------------------ consensus_13304#0 ATGTGCATAAGTAGTGTCTATGGTGCTGTGTCAATAAGACATCACAATAGAAACTGCATT 1809 consensus_13304#1 ------------------------------------------------------------ consensus_13304#2 ------------------------------------------------------------ consensus_13304#0 CTACAACCACCATGGTTGGTTTTTTAAAGTGGGCCATTAATAAATACAACATCTCTCTTC 1869 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||