These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13307#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 725 fasta sequence [TCGCCTTTTTCTGAGACTCAGAGCGGCGGCGAGCGCCGGCCGGTCGCCG-GCGGAGGAGTTGGTGTGGAGAGGGCGGGGAGATGGTTGTCCGGATCAGGCTGGCGCGGTTCGGCTGCCGGAACAGGCCCTTCTACCGGCTCATGGCCGCCGACAGCCGCTCCCCGCGCGACGGCAAGCACCTCGAGGTCCTCGGCTACTACGACCCGCTCCCCGGGAAGGATGGTGGCAAGAGAATGGGGTTAAAATTCGACCGGGTGAAGTATTGGCTATCAGTTGGAGCACAGCCATCGGATCCTGTGGAGCGCATCCTCTACCGTGCTGGAATTCTACCTCCACCTCCAATGCTAGCTATGGCCCACAAGGGTGGGCCTCGCGACAGACGTCCTATTGATCCCATGACTGGGCGCCCCTTAGACCTTGAGGGTGTCACAGTTGTTGATGATTCTCATACTCCCAAGAGTGGTGATGGAGCACCTAACGAGGAGACAGCATAGATGAGGCATGATGATATATCTGTTTTAGCATATTGTGTGGTTTTGCAAGATTAAAAAGTACTGTTTGTGGCCTTTCTGATGGGTGTTTGAGCCTGTGACTAGTATGTTGTGACCTTTCTTGCTGACCGGCTTTATTGATCTATGCTCCTGTCATCTATTCTCAGGAACACGAACCTGGAAACATGAGTTGTTCTTTTTGATAAAATTTGTATGTTGTGTTCCAAAAAAAAA] [+] EMBL AK064304 [TCGCCTTTTTCTGAGACTCAGAGCGGCGGCGAGCGCCGGCCGGTCGCCG GCGGAGGAGTTGGTGTGGAGAGGGCGGGGAGATGGTTGTCCGGATCAGGCTGGCGCGGTTCGGCTGCCGGAACAGGCCCTTCTACCGGCTCATGGCCGCCGACAGCCGCTCCCCGCGCGACGGCAAGCACCTCGAGGTCCTCGGCTACTACGACCCGCTCCCCGGGAAGGATGGTGGCAAGAGAATGGGGTTAAAATTCGACCGGGTGAAGTATTGGCTATCAGTTGGAGCACAGCCATCGGATCCTGTGGAGCGCATCCTCTACCGTGCTGGAATTCTACCTCCACCTCCAATGCTAGCTATGGCCCACAAGGGTGGGCCTCGCGACAGACGTCCTATTGATCCCATGACTGGGCGCCCCTTAGACCTTGAGGGTGTCACAGTTGTTGATGATTCTCATACTCCCAAGAGTGGTGATGGAGCACCTAACGAGGAGACAGCATAGATGAGGCATGATGATATATCTGTTTTAGCATATTGTGTGGTTTTGCAAGATTAAAAAGTACTGTTTGTGGCCTTTCTGATGGGTGTTTGAGCCTGTGACTAGTATGTTGTGACCTTTCTTGCTGACCGGCTTTATTGATCTATGCTCCTGTCATCTATTCTCAGGAACACGAACCTGGAAACATGAGTTGTTCTTTTTGATAAAATTTGTAT ] [+] EMBL AU029873 [ CTCAGAGCGGCGGCGAGCG CGGCCGGTCGCCGNGGNAAGGAGTTGGTGTGGAGAGGGCGGGGAGATGGTTGTCCGGATCAGGCTGGCGCGGTTCGGCTGCCGGAACAGGCCCTTCTACCGGCTCATGGCCGCCGACAGCCGCTCCCCGCGCGACGGCAAGCACCTCGAGGTCCTCGGCTACTACGACCCGCTCCCCGGGAAGGATGGTGGCAAGAGAATGGGGTTAAAATTCGACCGGGTGAAGTATTGGCTATCAGTTGGAGCACAGCCATCGGATCCTGTGGAGC ] [+] EMBL CF334286 [ GGCGGAGAGATGGTTGTCCGGATCATGCTGGCGCGGTTCGGCTGCCGGAACAGGCCCTTCT ] [-] EMBL CF281214 [ CCCCGGGAAGGATGGTGGCAAGAGAATGGGGTTAAAATTCGACCGGGTGAAGTATTGGCTATCAGTTGGAGCACAGCCATCGGATCCTGTGGAGCGCATCCTCTACCGTGCTGGAATTCTACCTCCACCTCCAATGCTAGCTATGGCCCACAAGGGTGGGCCTCGCGACAGACGTCCTATTGATCCCATGACTGGGCGCCCCTTAGACCTTGAGGGTGTCACAGTTGTTGATGATTCTCATACTCCCAAGAGTGGTGATGGAGCACCTAACGAGGAGACAGCATAGATGAGGCATGATGATATATCTGTTTTAGCATATTGTGTGGTTTTGCAAGATTAAAAAGTACTGTTTGTGGCCTTTCTGATGGGTGTTTGAGCCTGTGACTAGTATGTTGTGACCTTTCTTGCTGACCGGCTTTATTGATATATGCTCCTGTCATCTATTCTCAGGAACACGAACCTGGAAACATGAGTTGTTCTTTTTGATAAAATTTGTATGTTGTGTTCCAAAAAAAAA] [-] EMBL AU165103 [ AGGAGACAGCATAGATGAGGCATGATGATATATCTGTTTTAGCATATTGTGTGGTTTTGCAAGATTAAAAAGTACTGTTTGTGGCCTTTTTGATGGGTGTTTGAGCCTGTGACTAGTATGTTGTGACCTTTCTTGCTGACCGGCTTTATTGATCTATGCTCCTGTCAaaaaa ] consensusID : consensus_13307#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 664 fasta sequence [TGCTCCCACAGGAGTGAACACGACGCGACCCGAGCCGGAGAAGGGGAAGGGAAGGCGGCGGCGGCGGCGGCGGAGGAGGAGGAGGCGCGAGGGGAGGCGAGCATGGTGGTGCGGATCCGGCTGGCGCGGTTCGGCTGCCGGAACCGGCCGTTCTACCGGGTGATGGCCGCCGACAGCCGCTCCCCGCGCGACGGCAAGCACCTCGAGGTCCTCGGCTACTACAACCCGCTCCCCGGGAAGGATGGTGGCAAGAGGATGGGGCTGAAATTCGACAGGGTCAAGTACTGGCTGTCTGTTGGTGCTCAGCCATCAGATCCTGTGCAGCG-ATCCTTTTTCGAGCTGGGCTTCTG-CTCCACCTCCAATGCTAGCTATGGCTCGAAAGGGTGGACCTCGTGATAGGCGCCCAATTCATCCGATGACTGGGCGCCCCTTGGATCTTGAGGGTGTCACGGTTGTTGATGACTCCAATGTTCCCGAAGGTGGTGCTGAGGAACCTGTGTCAGAGGAGTGATGCTGCAGTAGGTCTCCACTTG-TTTGTTGTGCCTCTGATAAGATCATGAGTACTGTACAATATGGAAACTTCCTAATC-ATGTAATCTTCCATTGTTTTCTAATAATTTAC-AAGGTCGTAGTGCTGCACTAAAAGTTAAAAAAAAAAAAAAAAA] [+] EMBL AK064108 [TGCTCCCACAGGAGTGAACACGACGCGACCCGAGCCGGAGAAGGGGAAGGGAAGGCGGCGGCGGCGGCGGCGGAGGAGGAGGAGGCGCGAGGGGAGGCGAGCATGGTGGTGCGGATCCGGCTGGCGCGGTTCGGCTGCCGGAACCGGCCGTTCTACCGGGTGATGGCCGCCGACAGCCGCTCCCCGCGCGACGGCAAGCACCTCGAGGTCCTCGGCTACTACAACCCGCTCCCCGGGAAGGATGGTGGCAAGAGGATGGGGCTGAAATTCGACAGGGTCAAGTACTGGCTGTCTGTTGGTGCTCAGCCATCAGATCCTGTGCAGCGCATCCTTTTTCGAGCTGGGCTTCTGCCTCCACCTCCAATGCTAGCTATGGCTCGAAAGGGTGGACCTCGTGATAGGCGCCCAATTCATCCGATGACTGGGCGCCCCTTGGATCTTGAGGGTGTCACGGTTGTTGATGACTCCAATGTTCCCGAAGGTGGTGCTGAGGAACCTGTGTCAGAGGAGTGATGCTGCAGTAGGTCTCCACTTG TTTGTTGTGCCTCTGATAAGATCATGTGTACTGTACAATATGGAAACTTCCTAATC ATGTAATCTTCCATTGTTTTCTAATAATTTAC AAGGTCGTAGTG ] [+] EMBL OS0019A [ ACACGACGCGACCCGAGCCGGAGAAGGGGAAGGGAAGGCGGCGGCGGCGGCGGCGGAGGAGGAGGAGGCGCGAGGGGAGGCGAGCATGGTGGTGCGGATCCGGCTGGCGCGGTTCGGCTGCCGGAACC GCCGTTCTACCGGGTGATGGCCGCCGACAGCCGCTNCCCGCGCGACGGCAAGCACCTCGAGGTCCTCGGCTACTACAACCCGCTNCCCGGGAAGGATGGTGGCAAGAGGATGGGGCTTAAATTCGACAGGGTCAAGTACTNGCTGTCTGTTGGTGCTNAGCCATCAGATCCTGTTCAang ] [+] EMBL AU063508 [ TCCCCGGGAAGGATGGTGGCAAGAGGATGGGGCTGAAATTCGACAGGGTCAAGTACTGGCTGTCTGTTGGTGCTCAGCCATCAGATCCTGTGCAGCG ATCCTTTTTCGAGCTGGGCTTCTG CTCCACCTCCAATGCTAGCTATGGCTCGAAAGGGTGGACCTCGTGATAGGCGCCCAATTCATCCGATGACTGGGCG CCCTTGGATCTTGAGGGTGTCACGGTTGTTGATGACTCCAATGTTCCCGAA GTGGTGCTGAGGAACCTGTGTCAGAGGAGTGATGCTGCAGTAGGTCTCCACTTG TTTGTTGTGCCTCTGATAAGATCATGAGTACTGTACAATATGG AACTTCCTAATC ATGTAATCTTCCATNGTTTTCTAATAATTTACAAAGGTCGTAGTGCTGCACTAAA ] [+] EMBL C28776 [ CCCCGGGAAGGATGGTGGCAAGAGGATGGGGCTGAAATTCGACAGGGTCAAGTACTGGCTGTCTGTTGGTGCTCAGCCATCAGATCCTGTGCAGCG ATCCTTTTTCGAGCTGGGCTTCTG CTCCACCTCCAATGCTAGCTATGGCTCGAAAGGGTGGACCTCGTGATAGGCGCCCAATTCATCCGATGACTGGGCG CCCTTGGATCTTGAGGGTGTCACGGTTGTTGATGACTCCAATGTTCCCGAAGTGGGTGCTGAGGAACCTGTGTCAGAGGAGTGATGCTGCAGTAGGTCTCCACTTGTTTTGTTGTGCCTCTGATAAGATCATGAGTACTGTACAATATGGAAACTTCCTAATCAATGTAATCTTCCATTGTTTTCTAATAAATTA ] [+] EMBL OSC00193 [ GACCNCGTGATAGGCGCCCAATTCATCCGATGACTGGNCNCACCTTGGATCTTGAGGGTGTCACGGTTGTTGATGACTCCAATGTTCCCGAAGGTGGTGCTGAGGAACCTGTGTCAGAGGAGTGATGCTGCAGTAGGTCTCCACTTG TTTGTTGTGCCTCTGATAAGATCATGAGTACTGTACAATATGGAAACTTCCTAATC ATGTAATCTTCCATTGTTTTCTAATAATTTAC AAGGTCGTAGTGCTGCACTATGAGTTAAAAAAAAAAAAAAAAA] consensusID : consensus_13307#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 481 fasta sequence [GCGGCGGCGGCGGCGGAGGAGGAGGAGGCGCGAGGGGAGGCGAGCATGGTGGTGCGGATCCGGCTGGCGCGGTTCGGCTGCCGGAACCGGCCGTTCTACCGGGTGATGGCCGCCGACAGCCGCTCCCCGCGCGACGGCAAGCACCTCGAGGTCCTCGGCTACTACAACCCGCTCCCCGGGAAGNATGGTGGCAAGAGGATGGGGCTGAAATTCGACAGGGTCAAGTACTGGCTGTCTGTTGGTGCTCAGCCATCAGATCCTGTGCAGCGCATCCTTTTTCGAGCTGGGCTTCTGCCTCCACCTCCAATGCTAGCTATGGCTCGAAAGGGNTGGACCTCGTGATTAGGCGGCNATNNGTGTNCGNAGNGGGNANTNTCNGTGGNNAATTGGNAATGTTTTNNGGNATTGTGCCNGTNANTNCNNAANNTTGNGNNGATNNGGAATNNCGGNGNGNNCNGGNNNNNTATNTGGGGNCNNCTTT] [+] EMBL OSC18811 [GCGGCGGCGGCGGCGGAGGAGGAGGAGGCGCGAGGGGAGGCGAGCATGGTGGTGCGGATCCGGCTGGCGCGGTTCGGCTGCCGGAACCGGCCGTTCTACCGGGTGATGGCCGCCGACAGCCGCTCCCCGCGCGACGGCAAGCACCTCGAGGTCCTCGGCTACTACAACCCGCTCCCCGGGAAGNATGGTGGCAAGAGGATGGGGCTGAAATTCGACAGGGTCAAGTACTGGCTGTCTGTTGGTGCTCAGCCATCAGATCCTGTGCAGCGCATCCTTTTTCGAGCTGGGCTTCTGCCTCCACCTCCAATGCTAGCTATGGCTCGAAAGGGNTGGACCTCGTGATTAGGCGGCNATNNGTGTNCGNAGNGGGNANTNTCNGTGGNNAATTGGNAATGTTTTNNGGNATTGTGCCNGTNANTNCNNAANNTTGNGNNGATNNGGAATNNCGGNGNGNNCNGGNNNNNTATNTGGGGNCNNCTTT] consensusID : consensus_13307#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 460 fasta sequence [GCAAGCACCTCGAGGTCCTCGGCTTACTACGACCCGCTCCCCGGGAAGGATGGTGGCAAGAGAATGGGGTTAAAATTCGACCGGGTGAAGTATTGGCTATCAGTTGGAGCACAGCCATCGGATCCTGTGGAGCGCATCCTCTACCGTGCTGGAATTCTACCTCCACCTCCAATGCTAGCTATGGCCCACAAGGGTGGGCCTCGCGACAGACGTCCTATTGATCCCATGACTGGGCGCCCCTTAGACCTTGAGGGTGTCACAGTTGTTGATGATTCTCATACTCCCAAGAGTGGTGATGGAGCNCCTAACGAGGAGACAGCATAGATGAGGCATGATGATATATCTGTTTTAGCATATTGTGTGGTTTTGCAAGATTAAAAAGTACTGTTTGTGGCCTTTCTGATGGGTGTTTGAGCCTGTGACTNGTATGTTGTGNNCTTTCTAAAAAAAAAAAAAAAAA] [+] EMBL AU101466 [GCAAGCACCTCGAGGTCCTCGGCTTACTACGACCCGCTCCCCGGGAAGGATGGTGGCAAGAGAATGGGGTTAAAATTCGACCGGGTGAAGTATTGGCTATCAGTTGGAGCACAGCCATCGGATCCTGTGGAGCGCATCCTCTACCGTGCTGGAATTCTACCTCCACCTCCAATGCTAGCTATGGCCCACAAGGGTGGGCCTCGCGACAGACGTCCTATTGATCCCATGACTGGGCGCCCCTTAGACCTTGAGGGTGTCACAGTTGTTGATGATTCTCATACTCCCAAGAGTGGTGATGGAGCNCCTAACGAGGAGACAGCATAGATGAGGCATGATGATATATCTGTTTTAGCATATTGTGTGGTTTTGCAAGATTAAAAAGTACTGTTTGTGGCCTTTCTGATGGGTGTTTGAGCCTGTGACTNGTATGTTGTGNNCTTTCTAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13307#0 ----------------------TCGCCTTTTTCTGAGACTCAGAGCGGCGGCGAGCGCCG 38 consensus_13307#3 ------------------------------------------------------------ consensus_13307#1 TGCTCCCACAGGAGTGAACACGACGCGACCCGAGCCGGAGAAGGGGAAGGGAAGGCGGCG 60 consensus_13307#2 ---------------------------------------------------------GCG 3 consensus_13307#0 GCCGGTCGCCGGCGGAGGAGTTGGTGTGGAGAGGGCGGGGAGATGGTTGTCCGGATCAGG 98 consensus_13307#3 ------------------------------------------------------------ consensus_13307#1 GCGGCGGCGGCGGAGGAGGAGGAGGCGCGAGGGGAGGCGAGCATGGTGGTGCGGATCCGG 120 consensus_13307#2 GCGGCGGCGGCGGAGGAGGAGGAGGCGCGAGGGGAGGCGAGCATGGTGGTGCGGATCCGG 63 consensus_13307#0 CTGGCGCGGTTCGGCTGCCGGAACAGGCCCTTCTACCGGCTCATGGCCGCCGACAGCCGC 158 consensus_13307#3 ------------------------------------------------------------ consensus_13307#1 CTGGCGCGGTTCGGCTGCCGGAACCGGCCGTTCTACCGGGTGATGGCCGCCGACAGCCGC 180 consensus_13307#2 CTGGCGCGGTTCGGCTGCCGGAACCGGCCGTTCTACCGGGTGATGGCCGCCGACAGCCGC 123 consensus_13307#0 TCCCCGCGCGACGGCAAGCACCTCGAGGTCCTCGGCT-ACTACGACCCGCTCCCCGGGAA 217 consensus_13307#3 -------------GCAAGCACCTCGAGGTCCTCGGCTTACTACGACCCGCTCCCCGGGAA 47 consensus_13307#1 TCCCCGCGCGACGGCAAGCACCTCGAGGTCCTCGGCT-ACTACAACCCGCTCCCCGGGAA 239 consensus_13307#2 TCCCCGCGCGACGGCAAGCACCTCGAGGTCCTCGGCT-ACTACAACCCGCTCCCCGGGAA 182 ************************ ***** **************** consensus_13307#0 GGATGGTGGCAAGAGAATGGGGTTAAAATTCGACCGGGTGAAGTATTGGCTATCAGTTGG 277 consensus_13307#3 GGATGGTGGCAAGAGAATGGGGTTAAAATTCGACCGGGTGAAGTATTGGCTATCAGTTGG 107 consensus_13307#1 GGATGGTGGCAAGAGGATGGGGCTGAAATTCGACAGGGTCAAGTACTGGCTGTCTGTTGG 299 consensus_13307#2 GNATGGTGGCAAGAGGATGGGGCTGAAATTCGACAGGGTCAAGTACTGGCTGTCTGTTGG 242 * ************* ****** * ********* **** ***** ***** ** ***** consensus_13307#0 AGCACAGCCATCGGATCCTGTGGAGCGCATCCTCTACCGTGCTGGAATTCTACCTCCACC 337 consensus_13307#3 AGCACAGCCATCGGATCCTGTGGAGCGCATCCTCTACCGTGCTGGAATTCTACCTCCACC 167 consensus_13307#1 TGCTCAGCCATCAGATCCTGTGCAGCG-ATCCTTTTTCGAGCTGGGCTTCTGC-TCCACC 357 consensus_13307#2 TGCTCAGCCATCAGATCCTGTGCAGCGCATCCTTTTTCGAGCTGGGCTTCTGCCTCCACC 302 ** ******** ********* **** ***** * ** ***** **** * ****** consensus_13307#0 TCCAATGCTAGCTATGGCCCACAAGGGT-GGGCCTCGCGAC-AGACGTCCTATT-GATCC 394 consensus_13307#3 TCCAATGCTAGCTATGGCCCACAAGGGT-GGGCCTCGCGAC-AGACGTCCTATT-GATCC 224 consensus_13307#1 TCCAATGCTAGCTATGGCTCGAAAGGGT-GGACCTCGTGAT-AGGCGCCCAATT-CATCC 414 consensus_13307#2 TCCAATGCTAGCTATGGCTCGAAAGGGNTGGACCTCGTGATTAGGCGGCNATNNGTGTNC 362 ****************** * ***** ** ***** ** ** ** * * * consensus_13307#0 CATGACTGGGCGCCCCTTAGACC-TTGAGGGTGTCACAGTTGTTGATGATT-CTCATACT 452 consensus_13307#3 CATGACTGGGCGCCCCTTAGACC-TTGAGGGTGTCACAGTTGTTGATGATT-CTCATACT 282 consensus_13307#1 GATGACTGGGCGCCCCTTGGATC-TTGAGGGTGTCACGGTTGTTGATGACT-CCAATGTT 472 consensus_13307#2 GNAGNGGGNANTNTCNGTGGNNAATTGGNAATGTTTTNNGGNATTGTGCCNGTNANTNCN 422 * * * * * *** *** * ** * consensus_13307#0 CCCAAGAGTGGTGATGGAGCACCT---AACGAGGAGACAGCATAGATGAGGCATGATGAT 509 consensus_13307#3 CCCAAGAGTGGTGATGGAGCNCCT---AACGAGGAGACAGCATAGATGAGGCATGATGAT 339 consensus_13307#1 CCCGAAGGTGGTGCTGAGGAACCTGTGTCAGAGGAGTGATGCTGCAGTAGGTCTCCACTT 532 consensus_13307#2 NAANNTTGNGNNGATNNGGAATNNCGGNGNGNNCNGGNNNNNTATNTGGGGNCNNCTTT- 481 * * * * * * * * ** consensus_13307#0 ATATCTG-----TTTTAGCATATTGTGTG-GTTTTGCAAGATTAAAAAGTACTGTTTGTG 563 consensus_13307#3 ATATCTG-----TTTTAGCATATTGTGTG-GTTTTGCAAGATTAAAAAGTACTGTTTGTG 393 consensus_13307#1 GTTTGTTGTGCCTCTGATAAGATCATGAGTACTGTACAATATGGAAACTTCCTAATCATG 592 consensus_13307#2 ------------------------------------------------------------ consensus_13307#0 GCCTTTCTGATGGGTGTTTGAGCCTGTGACTAGTATGTTGTGACCTTTCTTGCTGACCGG 623 consensus_13307#3 GCCTTTCTGATGGGTGTTTGAGCCTGTGACTNGTATGTTGTGNNCTTTCTAAAAAAAAAA 453 consensus_13307#1 TAATCTTCCATTGTTTTCTAATAATTT-ACAAGGTCGTAGTGCTGCACTAAAAGTTAAAA 651 consensus_13307#2 ------------------------------------------------------------ consensus_13307#0 CTTTATTGATCTATGCTCCTGTCATCTATTCTCAGGAACACGAACCTGGAAACATGAGTT 683 consensus_13307#3 AAAAAAA----------------------------------------------------- 460 consensus_13307#1 AAAAAAAAAAAAA----------------------------------------------- 664 consensus_13307#2 ------------------------------------------------------------ consensus_13307#0 GTTCTTTTTGATAAAATTTGTATGTTGTGTTCCAAAAAAAAA 725 consensus_13307#3 ------------------------------------------ consensus_13307#1 ------------------------------------------ consensus_13307#2 ------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||