These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13310#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1713 fasta sequence [GCCTCAAAACCAACCGCGTCCGTCCCCGGCGTCAAAACCATGTGCCCCCCCGCCCCATTCCTACGTGCTGCCGCGCGCCACATATTAATCAGCCGCACACCGTTGCCCGCCTACCACTACTACCACTGATCACACTTGCTACTACTACCACACATGGCGAGGAGAGCGCGGGAAGAGGAAGCGGATCAGGTGGAGAGGAAGCTGGTGCTGGGGCGGTACGAGCTCGGGAGGCTGCTGGGGCAGGGCACGTTCGCCAAGGTGTACTACGGCCGTGACCTCCGGTCCGGTGAGAGCGTGGCGATCAAGGTGATCGACAAGGCGCGGCTCCGTCGCACGGAAGGGATGGTGGAGCAGCTGCGGCGTGAGATCTCCATCATGCGGATGGTGCGCCACCCCAACGTGGTGGGGATCCGCGAGGTGCTCGCCAGCCGCGCCCGCGTGTTCGTCGTCATGGAGTACGCCCGCGGCGGGGAGCTGTTCGCCAAGGTGGCGCGCGGGCGGCTCACCGAGGAGCACGCGAGGAGGTACTTCCAGCAGCTCGTCGCCGCCGTCGGGTTCTGCCACGGCCGCGGCGTCGCGCACCGGGACCTCAAGCCCGAGAACCTGCTGCTCGACGAGGAGGGGCGGCTCAAGGTCACCGACTTCGGCCTCGCCGCGCTGCCCGAGCAGCTGCGACAGGACGGCCTCCTCCACACGCAGTGCGGCACCCCGGCGTACGTCGCGCCCGAGGTGCTCCGGAAGCGCGGCTATGACGGCGCCCGCGCCGACCTCTGGTCCTGCGGCGTCGTGCTCTACGTGCTCCTCTGCGGCTTCCTCCCGTTCCAGCACGAGAACTACGCCAAGATGTACCAGAAGATCTTCAAGGCGGAGTACCAGGTGCCGCCGTGGGTGTCCGGCGACGCGCGCCGCCTCATCGTCCGCCTGCTCGTCGTCGACCCGGCCAAGCGCATCTCCATCCCGGAGATCATGCGCACGCCATGGTTCAAGAAGGGCTTCGTGCCGCCCGTCCCCACCTCCCCTGTCTCCCCCAAGAAATGGGAAGAAGACGATGTCCTCCTCGACGGCGGCGACTCCGGCGCCATGTCGCCCCGGACGTGCAACGCGTTCCAGCTCATATCCTCCATGTCCTCCGGGTTCGACCTGTCGGGGATGTTCGAGAGCGAGCAGAAGGCCGCCACGGTGTTCACGTCGCGCGCGCCGGCGGCCACCGTCATCCAGAAGCTGGAGGCCGTGGGGCGATCGCTGGGTTACAGCGCCACG-AGAGGGAAAGGGTGGAAGCTGAGGTTGGAGGCGACGGCGGACGG-AGCAAACGGGCGGCTCGCGGTCACCGTCG-AGGCGCTCG-AGGTGGCCGCCGACGTCGCGGTGGTCGAGTTCGCGCACGACGCCGGCGACGAGCTCGAGTTCAACAAGTTCTGCGCCGTCGACGTGCGGCCGGGGCTCGCCGACATTGTCTGGGCGTGGCAGGGCGACCGGCCGGCGGCGCCCGACGTTGCCGCCGCCACCGTCGAGTGCTCGCCGGCGTGATCAGAGCCGTCCGTTCAGCGCGACGTGAAATCTGTAGGATGTATTAGCTTTAGCTTCTTTGCTCGCGGTTATGTACAGGCCAAATCGAGAGATGTGTAAATACAAAAGTTTTGTTACTTGATCAATCTAATTTGGGTTAATGATTAGTATAAAAGANAAAGGCAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK061220 [GCCTCAAAACCAACCGCGTCCGTCCCCGGCGTCAAAACCATGTGCCCCCCCGCCCCATTCCTACGTGCTGCCGCGCGCCACATATTAATCAGCCGCACACCGTTGCCCGCCTACCACTACTACCACTGATCACACTTGCTACTACTACCACACATGGCGAGGAGAGCGCGGGAAGAGGAAGCGGATCAGGTGGAGAGGAAGCTGGTGCTGGGGCGGTACGAGCTCGGGAGGCTGCTGGGGCAGGGCACATTCGCCAAGGTGTACTACGGCCGTGACCTCCGGTCCGGTGAGAGCGTGGCGATCAAGGTGATCGACAAGGCGCGGCTCCGTCGCACGGAAGGGATGGTGGAGCAGCTGCGGCGTGAGATCTCCATCATGCGGATGGTGCGCCACCCCAACGTGGTGGGGATCCGCGAGGTGCTCGCCAGCCGCGCCCGCGTGTTCGTCGTCATGGAGTACGCCCGCGGCGGGGAGCTGTTCGCCAAGGTGGCGCGCGGGCGGCTCACCGAGGAGCACGCGAGGAGGTACTTCCAGCAGCTCGTCGCCGCCGTCGGGTTCTGCCACGGCCGCGGCGTCGCGCACCGGGACCTCAAGCCCGAGAACCTGCTGCTCGACGAGGAGGGGCGGCTCAAGGTCACCGACTTCGGCCTCGCCGCGCTGCCCGAGCAGCTGCGACAGGACGGCCTCCTCCACACGCAGTGCGGCACCCCGGCGTACGTCGCGCCCGAGGTGCTCCGGAAGCGCGGCTATGACGGCGCCCGCGCCGACCTCTGGTCCTGCGGCGTCGTGCTCTACGTGCTCCTCTGCGGCTTCCTCCCGTTCCAGCACGAGAACTACGCCAAGATGTACCAGAAGATCTTCAAGGCGGAGTACCAGGTGCCGCCGTGGGTGTCCGGCGACGCGCGCCGCCTCATCGTCCGCCTGCTCGTCGTCGACCCGGCCAAGCGCATCTCCATCCCGGAGATCATGCGCACGCCATGGTTCAAGAAGGGCTTCGTGCCGCCCGTCCCCACCTCCCCTGTCTCCCCCAAGAAATGGGAAGAAGACGATGTCCTCCTCGACGGCGGCGACTCCGGCGCCATGTCGCCCCGGACGTGCAACGCGTTCCAGCTCATATCCTCCATGTCCTCCGGGTTCGACCTGTCGGGGATGTTCGAGAGCGAGCAGAAGGCCGCCACGGTGTTCACGTCGCGCGCGCCGGCGGCCACCGTCATCCAGAAGCTGGAGGCCGTGGGGCGATCGCTGGGTTACAGCGCCACG AGAGGGAAAGGGTGGAAGCTGAGGTTGGAGGCGACGGCGGACGG AGCAAACGGGCGGCTCGCGGTCACCGTCG AGGCGCTCG AGGTGGCCGCCGACGTCGCGGTGGTCGAGTTCGCGCACGACGCCGGCGACGAGCTCGAGTTCAACAAGTTCTGCGCCGTCGACGTGCGGCCGGGGCTCGCCGACATTGTCTGGGCGTGGCAGGGCGACCGGCCGGCGGCGCCCGACGTTGCCGCCGCCACCGTCGAGTGCTCGCCGGCGTGATCAGAGCCGTCCGTTCAGCGCGACGTGAAATCTGTAGGATGTATTAGCTTTAGCTTCTTTGCTCGCGGTTATGTACAGGCCAAATCGAGAGATGTGTAAATACAAAAGTTTTG ] [+] EMBL CB640866 [ TCAAAACCGACCGCGTCCGTCCCCGGCGTCAAAACCATGTGCCCCCCCGCCCCATTCCTACGTGCTGCCGCGCGCCACATATTAATCAGCCGCACACCGTTGCCCGCCTACCACTACTACCACTGATCACACTTGCTACTACTACCACACATGGCGAGGAGAGCGCGGGAAGAGGAAGCGGATCATGTGGAGAGGAAGCTGGTGCTGGGGCGGTACGAGCTCGGGAGGCTGCTGGGGCAGGGCACGTTCGCCAAGGTGTACTACGGCCGTGACCTCCGGTCCGGTGAGAGCGTGGCGATCAAGGTGATCGACAAGGCGCGGCTCCGTCGCACGGAAGGGATGGTGGAGCAa ] [+] EMBL CB638820 [ AACCGCGTCCGTCCCCGGCGTCAAAACCATGTGCCCCCCCGCCCCATTCCTACGTGCTGCCGCGCGCCACATATTAATCAGCCGCACACCGTTGCCCGCCTACCACTACTACCACTGATCACACTTGCTACTACTACCACACATGGCGAGGAGAGCGCGGGAAGAGGAAGCGGATCAGGTGGAGAGGAAGCTGGTGCTGGGGCGGTACGAGCTCGGGAGGCTGCTGGGGCAGGGCACGTTCGCCAAGGTGTACTACGGCCGTGACCTCCGGTCCGGTGAGAGCGTGGCGATCAAAGTGATCGACAAGGCGCGGCTCCGTCGCACGGAAGG ] [+] EMBL AK061493 [ ACCACTGATCACACTTGCTACTACTACCACACATGGCGAGGAGAGCGCGGGAAGAGGAAGCGGATCAGGTGGAGAGGAAGCTGGTGCTGGGGCGGTACGAGCTCGGGAGGCTGCTGGGGCAGGGCACGTTCGCCAAGGTGTACTACGGCCGTGACCTCCGGTCCGGTGAGAGCGTGGCGATCAAGGTGATCGACAAGGCGCGGCTCCGTCGCACGGAAGGGATGGTGGAGCAGCTGCGGCGTGAGATCTCCATCATGCGGATGGTGCGCCACCCCAACGTGGTGGGGATCCGCGAGGTGCTCGCCAGCCGCGCCCGCGTGTTCGTCGTCATGGAGTACGCCCGCGGCGGGGAGCTGTTCGCCAAGGTGGCGCGCGGGCGGCTCACCGAGGAGCACGCGAGGAGGTACTTCCAGCAGCTCGTCGCCGCCGTCGGGTTCTGCCACGGCCGCGGCGTCGCGCACCGGGACCTCAAGCCCGAGAACCTGCTGCTCGACGAGGAGGGGCGGCTCAAGGTCACCGACTTCGGCCTCGCCGCGCTGCCCGAGCAGCTGCGACAGGACGGCCTCCTCCACACGCAGTGCGGCACCCCGGCGTACGTCGCGCCCGAGGTGCTCCGGAAGCGCGGCTATGACGGCGCCCGCGCCGACCTCTGGTCCTGCGGCGTCGTGCTCTACGTGCTCCTCTGCGGCTTCCTCCCGTTCCAGCACGAGAACTACGCCAAGATGTACCAGAAGATCTTCAAGGCGGAGTACCAGGTGCCGCCGTGGGTGTCCGGCGACGCGCGCCGCCTCATCGTCCGCCTGCTCGTCGTCGACCCGGCCAAGCGCATCTCCATCCCGGAGATCATGCGCACGCCATGGTTCAAGAAGGGCTTCGTGCCGCCCGTCCCCACCTCCCCTGTCTCCCCCAAGAAATGGGAAGAAGACGATGTCCTCCTCGACGGCGGCGACTCCGGCGCCATGTCGCCCCGGACGTGCAACGCGTTCCAGCTCATATCCTCCATGTCCTCCGGGTTCGACCTGTCGGGGATGTTCGAGAGCGAGCAGAAGGCCGCCACGGTGTTCACGTCGCGCGCGCCGGCGGCCACCGTCATCCAGAAGCTGGAGGCCGTGGGGCGATCGCTGGGTTACAGCGCCACG AGAGGGAAAGGGTGGAAGCTGAGGTTGGAGGCGACGGCGGACGG AGCAAACGGGCGGCTCGCGGTCACCGTCG AGGCGCTCG AGGTGGCCGCCGACGTCGCGGTGGTCGAGTTCGCGCACGACGCCGGCGACGAGCTCGAGTTCAACAAGTTCTGCGCCGTCGACGTGCGGCCGGGGCTCGCCGACATTGTCTGGGCGTGGCAGGGCGACCGGCCGGCGGCGCCCGACGTTGCCGCCGCCACCGTCGAGTGCTCGCCGGCGTGATCAGAGCCGTCCGTTCAGCGCGACGTGAAATCTGTAGGATGTATTAGCTTTAGCTTCTTTGCTCGCGGTTATGTACAGGCCAAATCGAGAGATGTGTAAATACAAAAGTTTTG ] [+] EMBL AK100881 [ CACTGATCACACTTGCTACTACTACCACACATGGCGAGGAGAGCGCGGGAAGAGGAAGCGGATCAGGTGGAGAGGAAGCTGGTGCTGGGGCGGTACGAGCTCGGGAGGCTGCTGGGGCAGGGCACGTTCGCCAAGGTGTACTACGGCCGTGACCTCCGGTCCGGTGAGAGCGTGGCGATCAAGGTGATCGACAAGGCGCGGCTCCGTCGCACGGAAGGGATGGTGGAGCAGCTGCGGCGTGAGATCTCCATCATGCGGATGGTGCGCCACCCCAACGTGGTGGGGATCCGCGAGGTGCTCGCCAGCCGCGCCCGCGTGTTCGTCGTCATGGAGTACGCCCGCGGCGGGGAGCTGTTCGCCAAGGTGGCGCGCGGGCGGCTCACCGAGGAGCACGCGAGGAGGTACTTCCAGCAGCTCGTCGCCGCCGTCGGGTTCTGCCACGGCCGCGGCGTCGCGCACCGGGACCTCAAGCCCGAGAACCTGCTGCTCGACGAGGAGGGGCGGCTCAAGGTCACCGACTTCGGCCTCGCCGCGCTGCCCGAGCAGCTGCGACAGGACGGCCTCCTCCACACGCAGTGCGGCACCCCGGCGTACGTCGCGCCCGAGGTGCTCCGGAAGCGCGGCTATGACGGCGCCCGCGCCGACCTCTGGTCCTGCGGCGTCGTGCTCTACGTGCTCCTCTGCGGCTTCCTCCCGTTCCAGCACGAGAACTACGCCAAGATGTACCAGAAGATCTTCAAGGCGGAGTACCAGGTGCCGCCGTGGGTGTCCGGCGACGCGCGCCGCCTCATCGTCCGCCTGCTCGTCGTCGACCCGGCCAAGCGCATCTCCATCCCGGAGATCATGCGCACGCCATGGTTCAAGAAGGGCTTCGTGCCGCCCGTCCCCACCTCCCCTGTCTCCCCCAAGAAATGGGAAGAAGACGATGTCCTCCTCGACGGCGGCGACTCCGGCGCCATGTCGCCCCGGACGTGCAACGCGTTCCAGCTCATATCCTCCATGTCCTCCGGGTTCGACCTGTCGGGGATGTTCGAGAGCGAGCAGAAGGCCGCCACGGTGTTCACGTCGCGCGCGCCGGCGGCCACCGTCATCCAGAAGCTGGAGGCCGTGGGGCGATCGCTGGGTTACAGCGCCACG AGAGGGAAAGGGTGGAAGCTGAGGTTGGAGGCGACGGCGGACGG AGCAAACGGGCGGCTCGCGGTCACCGTCG AGGCGCTCG AGGTGGCCGCCGACGTCGCGGTGGTCGAGTTCGCGCACGACGCCGGCGACGAGCTCGAGTTCAACAAGTTCTGCGCCGTCGACGTGCGGCCGGGGCTCGCCGACATTGTCTGGGCGTGGCAGGGCGACCGGCCGGCGGCGCCCGACGTTGCCGCCGCCACCGTCGAGTGCTCGCCGGCGTGATCAGAGCCGTCCGTTCAGCGCGACGTGAAATCTGTAGGATGTATTAGCTTTAGCTTCTTTGCTCGCGGTTATGTACAGGCCAAATCGAGAGATGTGTAAATACAAAAGTTTTG ] [-] EMBL CB638821 [ GGACGTGCAACGCGTTCCAGCTCATATCCTCCATGTCCTCCGGGTTCGACCTGTCGGGGATGTTCGAGAGCGAGCAGAAGGCCGCCACGGTGTTCACGTCGCGCGCGCCGGCGGCCACCGTCATCCAGAAGCTGGAGGCCGTGGGGCGATCGCTGGGTTACAGCGCCACG AGAGGGAAAGGGTGGAAGCTGAGGTTGGAGGCGACGGCGGACGG AGCAAACGGGCGGCTCGCGGTCACCGTCG AGGCGCTCG AGGTGGCCGCCGACGTCGCGGTGGTCGAGTTCGCGCACGACGCCGGCGACGAGCTCGAGTTCAACAAGTTCTGCGCCGTCGACGTGCGGCCGGGGCTCGCCGACATTGTCTGGGCGTGGCAGGGCGACCGGCCGGCGGCGCCCGACGTTGCCGCCGCCACCGTCGAGTGCTCGCCGGCGTGATCAGAGCCGTCCGTTCAGCGCGACGTGAAATCTGTAGGATGTATTAGCTTTAGCTTCTTTGCTCGCGGTTATGTACAGGCCAAATCGAGAGATGTGTAAATACAAAAGTTTTGTTACTTGATCAATCTAATTTGGGTTAAT ] [+] EMBL C98911 [ GATCGCTGGGTTACAGCGCCACGAAGAGGG AANGGTGGAA CTGANGTTGGAGGCGACGGCGGACGGAAGCAAACGGGCGGCTCGCGGTCACCGTCGAAGGCGCTCGAAGGTGGCCGCCGACGTCGCGGTGGTCGAGTTCGCGCACGACGCCGGCNACGAGCTCGAGTTCAACAAGTTCTGCGCCGTCGACGTGCNGCCGGGGCTCGCCGACATTGTCTGGGCGTGGCAGGGCGACCGGCCGGCGGCGCCCGACGTTGCCGCCGCCACCGTCGAGTGCTCGCCGGCGTGATCAGAGCCGTCCGTTCAGCGCGACGTGAAATCTGTAGGATGTATTAGCTTTAGCTTCTTTGCTCGCGGTTATGTACAGGCCAAATCGAGAGATGTGTAAATACAAAAGTTTTGTTACTTGATCAATCTAATTTGGGTTAATGATTAGTATAAAA ] [+] EMBL AU071257 [ AAACGGGCGGCTCGCGGTCACCGTCG AGGCGCTCG AGGTGGCCGCCGACGTCGCGGTGGTCGAGTTCGCGCACGACGCCGGCGACGAGCTCGAGTTCAACAAGTTCTGCGCCGTCGACGTGCGGCCGGGGCTCGCCGACATTGTCTGGGCGTGGCAGGGCGACCGGCCGGCGGCGCCCGACGTTGCCGCCGCCACCGTCGAGTGCTCGCCGGCGTGATCAGAGCCGTCCGTTCAGCGCGACGTGAAATCTGTAGGATGTATTAGCTTTAGCTTCTTTGCTCGCGGTTATGTACAGGCCAAATCGAGAGATGTGTAAATACAAAAGTTTTGTTACTTGATCAATCTAATTTGGGTTAAAAAAAAAAAAAAAAGANAAA ] [+] EMBL CF328668 [ TAGGATGTATTAGCTTTAGCTTCTTTGCTCGCGGTTATGTACAGGCCAAATCGAGAGATGTGTAAATACAAAAGTTTTGTTACTTGATCAATCTAATTTGGGTTAATGATTAGTATAATTGATTATGGCAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_13310#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1222 fasta sequence [CGGATCAGGTGGAGAGGAAGCTGGTGCTGGGGCGGTACGAGCTCGGGAGGCTGCTGGGGCAGGGCACGTTCGCCAAGGTGTACTACGGCCGTGACCTCCGGTCCGGTGAGAGCGTGGCGATCAAGGTGATCGACAAGGCGCGGCTCCGTCGCACGGAAGGGATGGTGGAGCAGCTGCGGCGTGAGATCTCCATCATGCGGATGGTGCGCCACCCCAACGTGGTGGGGATCCGCGAGGTGCTCGCCAGCCGCGCCCGCGTGTTCGTCGTCATGGAGTACGCCCGCGGCGGGGAGCTGTTCGCCAAGGTGGCGCGCGGGCGGCTCACCGAGGAGCACGCGAGGAGGTACTTCCAGCAGCTCGTCGCCGCCGTCGGGTTCTGCCACGGCCGCGGCGTCGCGCACCGGGACCTCAAGCCCGAGAACCTGCTGCTCGACGAGGAGGGGCGGCTCAAGGTCACCGACTTCGGCCTCGCCGCGCTGCCCGAGCAGCTGCGACAGGACGGCCTCCTCCACACGCAGTGCGGCACCCCGGCGTACGTCGCGCCCGAGGTGCTCCGGAAGCGCGGCTATGACGGCGCCCGCGCCGACCTCTGGTCCTGCGGCGTCGTGCTCTACGTGCTCCTCTGCGGCTTCCTCCCGTTCCAGCACGAGAACTACGCCAAGATGTACCAGAAGATCTTCAAGGCGGAGTACCAGGTGCCGCCGTGGGTGTCCGGCGACGCGCGCCGCCTCATCGTCCGCCTGCTCGTCGTCGACCCGGCCAAGCGCATCTCCATCCCGGAGATCATGCGCACGCCATGGTTCAAGAAGGGCTTCGTGCCGCCCGTCCCCACCTCCCCTGTCTCCCCCAAGAAATGGGAAGAAGACGATGTCCTCCTCGACGGCGGCGACTCCGGCGCCATGTCGCCCCGGACGTGCAACGCGTTCCAGCTCATATCCTCCATGTCCTCCGGGTTCGACCTGTCGGGGATGTTCGAGAGCGAGCAGAAGGCCGCCACGGTGTTCACGTCGCGCGCGCCGGCGGCCACCGTCATCCAGAAGCTGGAGGCCGTGGGGCGATCGCTGGGTTACAGCGCCACGAGAGGGAAAGGGTGGAAGCTGAGGTTGGAGGCGACGGCGTCCGTTCAGCGCGACGTGAAATCTGTAGGATGTATTAGCTTTAGCTTCTTTGCTCGCGGTTATGTACAGGCCAAATCGAGAGATGTGTAAATACAAAAGTTTTG] [+] EMBL AK119760 [CGGATCAGGTGGAGAGGAAGCTGGTGCTGGGGCGGTACGAGCTCGGGAGGCTGCTGGGGCAGGGCACGTTCGCCAAGGTGTACTACGGCCGTGACCTCCGGTCCGGTGAGAGCGTGGCGATCAAGGTGATCGACAAGGCGCGGCTCCGTCGCACGGAAGGGATGGTGGAGCAGCTGCGGCGTGAGATCTCCATCATGCGGATGGTGCGCCACCCCAACGTGGTGGGGATCCGCGAGGTGCTCGCCAGCCGCGCCCGCGTGTTCGTCGTCATGGAGTACGCCCGCGGCGGGGAGCTGTTCGCCAAGGTGGCGCGCGGGCGGCTCACCGAGGAGCACGCGAGGAGGTACTTCCAGCAGCTCGTCGCCGCCGTCGGGTTCTGCCACGGCCGCGGCGTCGCGCACCGGGACCTCAAGCCCGAGAACCTGCTGCTCGACGAGGAGGGGCGGCTCAAGGTCACCGACTTCGGCCTCGCCGCGCTGCCCGAGCAGCTGCGACAGGACGGCCTCCTCCACACGCAGTGCGGCACCCCGGCGTACGTCGCGCCCGAGGTGCTCCGGAAGCGCGGCTATGACGGCGCCCGCGCCGACCTCTGGTCCTGCGGCGTCGTGCTCTACGTGCTCCTCTGCGGCTTCCTCCCGTTCCAGCACGAGAACTACGCCAAGATGTACCAGAAGATCTTCAAGGCGGAGTACCAGGTGCCGCCGTGGGTGTCCGGCGACGCGCGCCGCCTCATCGTCCGCCTGCTCGTCGTCGACCCGGCCAAGCGCATCTCCATCCCGGAGATCATGCGCACGCCATGGTTCAAGAAGGGCTTCGTGCCGCCCGTCCCCACCTCCCCTGTCTCCCCCAAGAAATGGGAAGAAGACGATGTCCTCCTCGACGGCGGCGACTCCGGCGCCATGTCGCCCCGGACGTGCAACGCGTTCCAGCTCATATCCTCCATGTCCTCCGGGTTCGACCTGTCGGGGATGTTCGAGAGCGAGCAGAAGGCCGCCACGGTGTTCACGTCGCGCGCGCCGGCGGCCACCGTCATCCAGAAGCTGGAGGCCGTGGGGCGATCGCTGGGTTACAGCGCCACGAGAGGGAAAGGGTGGAAGCTGAGGTTGGAGGCGACGGCGTCCGTTCAGCGCGACGTGAAATCTGTAGGATGTATTAGCTTTAGCTTCTTTGCTCGCGGTTATGTACAGGCCAAATCGAGAGATGTGTAAATACAAAAGTTTTG] [+] EMBL C98910 [ AGATGTACCAGAAGATCTTCAAGGCGGAGTACCAGGTGCCGCCGTGGGTGTCCGGCGACGCGCGCCGCCTCATCGTCCGCCTGCTCGTCGTCGACCCGGCCAAGCGCATCTCCATCCCGGAGATCATGCGCACGCCATGGTTCAAGAAGGGCTTCGTGCCGCCCGTCCCCACNTCCCCTGTCTCCCCCAAGAAATGGGAAGAAGACGATGTCCTCCTCGACGGCGGCGACTCCGGCG CATGTCG CCCGGACGTGCAACGCGTTCCAGCTCATATCCTCCATGTCCTCCGGGTTCGACCTGTCGGGGATGTTCGAGAGCGAGCAGAAGGCCGCCACGGTGTTCACGTCGCGCGCGCCGGCGGCCAACGTCATCCAGAAGCTTGAAGCCGTTGGGCGATCGCTNGGTTA AACGCCACGAGAGGGAAA GGTTGAA CTTAAGTTGa ] consensusID : consensus_13310#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 184 fasta sequence [ATGGATTGAAGGAGTAAAAAGAAATTTGTAGGATGTATTAGCTTTAGTTTTTTTGCTCGCGGTTATGTCCAGGCCAAATCGAAAAATGTGTAAATACAAAAGTTTTGTTACTTGATCAATTTAATTTGGGTTAATGATTAGTATAATTGATTAGGGCAAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CF328667 [ATGGATTGAAGGAGTAAAAAGAAATTTGTAGGATGTATTAGCTTTAGTTTTTTTGCTCGCGGTTATGTCCAGGCCAAATCGAAAAATGTGTAAATACAAAAGTTTTGTTACTTGATCAATTTAATTTGGGTTAATGATTAGTATAATTGATTAGGGCAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13310#0 GCCTCAAAACCAACCGCGTCCGTCCCCGGCGTCAAAACCATGTGCCCCCCCGCCCCATTC 60 consensus_13310#1 ------------------------------------------------------------ consensus_13310#2 ------------------------------------------------------------ consensus_13310#0 CTACGTGCTGCCGCGCGCCACATATTAATCAGCCGCACACCGTTGCCCGCCTACCACTAC 120 consensus_13310#1 ------------------------------------------------------------ consensus_13310#2 ------------------------------------------------------------ consensus_13310#0 TACCACTGATCACACTTGCTACTACTACCACACATGGCGAGGAGAGCGCGGGAAGAGGAA 180 consensus_13310#1 ------------------------------------------------------------ consensus_13310#2 ------------------------------------------------------------ consensus_13310#0 GCGGATCAGGTGGAGAGGAAGCTGGTGCTGGGGCGGTACGAGCTCGGGAGGCTGCTGGGG 240 consensus_13310#1 -CGGATCAGGTGGAGAGGAAGCTGGTGCTGGGGCGGTACGAGCTCGGGAGGCTGCTGGGG 59 consensus_13310#2 ------------------------------------------------------------ consensus_13310#0 CAGGGCACGTTCGCCAAGGTGTACTACGGCCGTGACCTCCGGTCCGGTGAGAGCGTGGCG 300 consensus_13310#1 CAGGGCACGTTCGCCAAGGTGTACTACGGCCGTGACCTCCGGTCCGGTGAGAGCGTGGCG 119 consensus_13310#2 ------------------------------------------------------------ consensus_13310#0 ATCAAGGTGATCGACAAGGCGCGGCTCCGTCGCACGGAAGGGATGGTGGAGCAGCTGCGG 360 consensus_13310#1 ATCAAGGTGATCGACAAGGCGCGGCTCCGTCGCACGGAAGGGATGGTGGAGCAGCTGCGG 179 consensus_13310#2 ------------------------------------------------------------ consensus_13310#0 CGTGAGATCTCCATCATGCGGATGGTGCGCCACCCCAACGTGGTGGGGATCCGCGAGGTG 420 consensus_13310#1 CGTGAGATCTCCATCATGCGGATGGTGCGCCACCCCAACGTGGTGGGGATCCGCGAGGTG 239 consensus_13310#2 ------------------------------------------------------------ consensus_13310#0 CTCGCCAGCCGCGCCCGCGTGTTCGTCGTCATGGAGTACGCCCGCGGCGGGGAGCTGTTC 480 consensus_13310#1 CTCGCCAGCCGCGCCCGCGTGTTCGTCGTCATGGAGTACGCCCGCGGCGGGGAGCTGTTC 299 consensus_13310#2 ------------------------------------------------------------ consensus_13310#0 GCCAAGGTGGCGCGCGGGCGGCTCACCGAGGAGCACGCGAGGAGGTACTTCCAGCAGCTC 540 consensus_13310#1 GCCAAGGTGGCGCGCGGGCGGCTCACCGAGGAGCACGCGAGGAGGTACTTCCAGCAGCTC 359 consensus_13310#2 ------------------------------------------------------------ consensus_13310#0 GTCGCCGCCGTCGGGTTCTGCCACGGCCGCGGCGTCGCGCACCGGGACCTCAAGCCCGAG 600 consensus_13310#1 GTCGCCGCCGTCGGGTTCTGCCACGGCCGCGGCGTCGCGCACCGGGACCTCAAGCCCGAG 419 consensus_13310#2 ------------------------------------------------------------ consensus_13310#0 AACCTGCTGCTCGACGAGGAGGGGCGGCTCAAGGTCACCGACTTCGGCCTCGCCGCGCTG 660 consensus_13310#1 AACCTGCTGCTCGACGAGGAGGGGCGGCTCAAGGTCACCGACTTCGGCCTCGCCGCGCTG 479 consensus_13310#2 ------------------------------------------------------------ consensus_13310#0 CCCGAGCAGCTGCGACAGGACGGCCTCCTCCACACGCAGTGCGGCACCCCGGCGTACGTC 720 consensus_13310#1 CCCGAGCAGCTGCGACAGGACGGCCTCCTCCACACGCAGTGCGGCACCCCGGCGTACGTC 539 consensus_13310#2 ------------------------------------------------------------ consensus_13310#0 GCGCCCGAGGTGCTCCGGAAGCGCGGCTATGACGGCGCCCGCGCCGACCTCTGGTCCTGC 780 consensus_13310#1 GCGCCCGAGGTGCTCCGGAAGCGCGGCTATGACGGCGCCCGCGCCGACCTCTGGTCCTGC 599 consensus_13310#2 ------------------------------------------------------------ consensus_13310#0 GGCGTCGTGCTCTACGTGCTCCTCTGCGGCTTCCTCCCGTTCCAGCACGAGAACTACGCC 840 consensus_13310#1 GGCGTCGTGCTCTACGTGCTCCTCTGCGGCTTCCTCCCGTTCCAGCACGAGAACTACGCC 659 consensus_13310#2 ------------------------------------------------------------ consensus_13310#0 AAGATGTACCAGAAGATCTTCAAGGCGGAGTACCAGGTGCCGCCGTGGGTGTCCGGCGAC 900 consensus_13310#1 AAGATGTACCAGAAGATCTTCAAGGCGGAGTACCAGGTGCCGCCGTGGGTGTCCGGCGAC 719 consensus_13310#2 ------------------------------------------------------------ consensus_13310#0 GCGCGCCGCCTCATCGTCCGCCTGCTCGTCGTCGACCCGGCCAAGCGCATCTCCATCCCG 960 consensus_13310#1 GCGCGCCGCCTCATCGTCCGCCTGCTCGTCGTCGACCCGGCCAAGCGCATCTCCATCCCG 779 consensus_13310#2 ------------------------------------------------------------ consensus_13310#0 GAGATCATGCGCACGCCATGGTTCAAGAAGGGCTTCGTGCCGCCCGTCCCCACCTCCCCT 1020 consensus_13310#1 GAGATCATGCGCACGCCATGGTTCAAGAAGGGCTTCGTGCCGCCCGTCCCCACCTCCCCT 839 consensus_13310#2 ------------------------------------------------------------ consensus_13310#0 GTCTCCCCCAAGAAATGGGAAGAAGACGATGTCCTCCTCGACGGCGGCGACTCCGGCGCC 1080 consensus_13310#1 GTCTCCCCCAAGAAATGGGAAGAAGACGATGTCCTCCTCGACGGCGGCGACTCCGGCGCC 899 consensus_13310#2 ------------------------------------------------------------ consensus_13310#0 ATGTCGCCCCGGACGTGCAACGCGTTCCAGCTCATATCCTCCATGTCCTCCGGGTTCGAC 1140 consensus_13310#1 ATGTCGCCCCGGACGTGCAACGCGTTCCAGCTCATATCCTCCATGTCCTCCGGGTTCGAC 959 consensus_13310#2 ---ATGGATTGAAGGAGTAAAAAGA---AATTTGTAGGATGTATTAGCTTTAGTTTTTTT 54 * * * * * ** * * * ** * ** ** * ** consensus_13310#0 -CTGTCGGGGATGTTCGAGAGCGAGCAGAAGGCCGCCACGGTGTTCACGTCGCGCGCGCC 1199 consensus_13310#1 -CTGTCGGGGATGTTCGAGAGCGAGCAGAAGGCCGCCACGGTGTTCACGTCGCGCGCGCC 1018 consensus_13310#2 GCTCGCGGTTATGTCC-AGGCCAAATCGAAAAATGTGTAAATACAAAAGTTTTGT-TACT 112 ** *** **** * ** * * *** * * * ** * * consensus_13310#0 GGCGGCCACCGTCATCCAGAAGCTGGAGGCCGTGGGGCGATCGCTGGGTTACAGCGCCAC 1259 consensus_13310#1 GGCGGCCACCGTCATCCAGAAGCTGGAGGCCGTGGGGCGATCGCTGGGTTACAGCGCCAC 1078 consensus_13310#2 --TGATCAATTTAATTTGG--GTTAATGAT--TAGTATAATTGATTAGG-GCAAAAAAAA 165 * ** * ** * * * * * * ** * * * ** * consensus_13310#0 GAGAGGGAAAGGGTGGAAGCTGAGGTTGGAGGCGACGGCGGACGGAGCAAACGGGCGGCT 1319 consensus_13310#1 GAGAGGGAAAGGGTGGAAGCTGAGGTTGGAGGCGACGGCGTCCGT--TCAGC--GCGACG 1134 consensus_13310#2 AAAAAAAAAAAAAAAAAAA----------------------------------------- 184 * * *** ** consensus_13310#0 CGCGGTCACCGTCGAGGCGCTCGAGGTGGCCGCCGACGTCGCGGTGGTCGAGTTCGCGCA 1379 consensus_13310#1 TGAAATCTGTAG-GATGTATTAGCTTTAGCTTCTTTGCTCGCGGTTAT---GTACAGGC- 1189 consensus_13310#2 ------------------------------------------------------------ consensus_13310#0 CGACGCCGGCGACGAGCTCGAGTTCAACAAGTTCTGCGCCGTCGACGTGCGGCCGGGGCT 1439 consensus_13310#1 CAAATCGAGAGATGTG--TAAATACAA-AAGTTTTG------------------------ 1222 consensus_13310#2 ------------------------------------------------------------ consensus_13310#0 CGCCGACATTGTCTGGGCGTGGCAGGGCGACCGGCCGGCGGCGCCCGACGTTGCCGCCGC 1499 consensus_13310#1 ------------------------------------------------------------ consensus_13310#2 ------------------------------------------------------------ consensus_13310#0 CACCGTCGAGTGCTCGCCGGCGTGATCAGAGCCGTCCGTTCAGCGCGACGTGAAATCTGT 1559 consensus_13310#1 ------------------------------------------------------------ consensus_13310#2 ------------------------------------------------------------ consensus_13310#0 AGGATGTATTAGCTTTAGCTTCTTTGCTCGCGGTTATGTACAGGCCAAATCGAGAGATGT 1619 consensus_13310#1 ------------------------------------------------------------ consensus_13310#2 ------------------------------------------------------------ consensus_13310#0 GTAAATACAAAAGTTTTGTTACTTGATCAATCTAATTTGGGTTAATGATTAGTATAAAAG 1679 consensus_13310#1 ------------------------------------------------------------ consensus_13310#2 ------------------------------------------------------------ consensus_13310#0 ANAAAGGCAAAAAAAAAAAAAAAAAAAAAAAAAA 1713 consensus_13310#1 ---------------------------------- consensus_13310#2 ---------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||