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Oryza sativa
cluster # 13310 cluster # 13310       Sequences # 12       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13310#0 length = 1713 sequences # 9  
consensus_13310#1 length = 1222 sequences # 2  
consensus_13310#2 length = 184 sequences # 1  

consensusID : consensus_13310#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 1713
fasta sequence
                              [GCCTCAAAACCAACCGCGTCCGTCCCCGGCGTCAAAACCATGTGCCCCCCCGCCCCATTCCTACGTGCTGCCGCGCGCCACATATTAATCAGCCGCACACCGTTGCCCGCCTACCACTACTACCACTGATCACACTTGCTACTACTACCACACATGGCGAGGAGAGCGCGGGAAGAGGAAGCGGATCAGGTGGAGAGGAAGCTGGTGCTGGGGCGGTACGAGCTCGGGAGGCTGCTGGGGCAGGGCACGTTCGCCAAGGTGTACTACGGCCGTGACCTCCGGTCCGGTGAGAGCGTGGCGATCAAGGTGATCGACAAGGCGCGGCTCCGTCGCACGGAAGGGATGGTGGAGCAGCTGCGGCGTGAGATCTCCATCATGCGGATGGTGCGCCACCCCAACGTGGTGGGGATCCGCGAGGTGCTCGCCAGCCGCGCCCGCGTGTTCGTCGTCATGGAGTACGCCCGCGGCGGGGAGCTGTTCGCCAAGGTGGCGCGCGGGCGGCTCACCGAGGAGCACGCGAGGAGGTACTTCCAGCAGCTCGTCGCCGCCGTCGGGTTCTGCCACGGCCGCGGCGTCGCGCACCGGGACCTCAAGCCCGAGAACCTGCTGCTCGACGAGGAGGGGCGGCTCAAGGTCACCGACTTCGGCCTCGCCGCGCTGCCCGAGCAGCTGCGACAGGACGGCCTCCTCCACACGCAGTGCGGCACCCCGGCGTACGTCGCGCCCGAGGTGCTCCGGAAGCGCGGCTATGACGGCGCCCGCGCCGACCTCTGGTCCTGCGGCGTCGTGCTCTACGTGCTCCTCTGCGGCTTCCTCCCGTTCCAGCACGAGAACTACGCCAAGATGTACCAGAAGATCTTCAAGGCGGAGTACCAGGTGCCGCCGTGGGTGTCCGGCGACGCGCGCCGCCTCATCGTCCGCCTGCTCGTCGTCGACCCGGCCAAGCGCATCTCCATCCCGGAGATCATGCGCACGCCATGGTTCAAGAAGGGCTTCGTGCCGCCCGTCCCCACCTCCCCTGTCTCCCCCAAGAAATGGGAAGAAGACGATGTCCTCCTCGACGGCGGCGACTCCGGCGCCATGTCGCCCCGGACGTGCAACGCGTTCCAGCTCATATCCTCCATGTCCTCCGGGTTCGACCTGTCGGGGATGTTCGAGAGCGAGCAGAAGGCCGCCACGGTGTTCACGTCGCGCGCGCCGGCGGCCACCGTCATCCAGAAGCTGGAGGCCGTGGGGCGATCGCTGGGTTACAGCGCCACG-AGAGGGAAAGGGTGGAAGCTGAGGTTGGAGGCGACGGCGGACGG-AGCAAACGGGCGGCTCGCGGTCACCGTCG-AGGCGCTCG-AGGTGGCCGCCGACGTCGCGGTGGTCGAGTTCGCGCACGACGCCGGCGACGAGCTCGAGTTCAACAAGTTCTGCGCCGTCGACGTGCGGCCGGGGCTCGCCGACATTGTCTGGGCGTGGCAGGGCGACCGGCCGGCGGCGCCCGACGTTGCCGCCGCCACCGTCGAGTGCTCGCCGGCGTGATCAGAGCCGTCCGTTCAGCGCGACGTGAAATCTGTAGGATGTATTAGCTTTAGCTTCTTTGCTCGCGGTTATGTACAGGCCAAATCGAGAGATGTGTAAATACAAAAGTTTTGTTACTTGATCAATCTAATTTGGGTTAATGATTAGTATAAAAGANAAAGGCAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK061220             [GCCTCAAAACCAACCGCGTCCGTCCCCGGCGTCAAAACCATGTGCCCCCCCGCCCCATTCCTACGTGCTGCCGCGCGCCACATATTAATCAGCCGCACACCGTTGCCCGCCTACCACTACTACCACTGATCACACTTGCTACTACTACCACACATGGCGAGGAGAGCGCGGGAAGAGGAAGCGGATCAGGTGGAGAGGAAGCTGGTGCTGGGGCGGTACGAGCTCGGGAGGCTGCTGGGGCAGGGCACATTCGCCAAGGTGTACTACGGCCGTGACCTCCGGTCCGGTGAGAGCGTGGCGATCAAGGTGATCGACAAGGCGCGGCTCCGTCGCACGGAAGGGATGGTGGAGCAGCTGCGGCGTGAGATCTCCATCATGCGGATGGTGCGCCACCCCAACGTGGTGGGGATCCGCGAGGTGCTCGCCAGCCGCGCCCGCGTGTTCGTCGTCATGGAGTACGCCCGCGGCGGGGAGCTGTTCGCCAAGGTGGCGCGCGGGCGGCTCACCGAGGAGCACGCGAGGAGGTACTTCCAGCAGCTCGTCGCCGCCGTCGGGTTCTGCCACGGCCGCGGCGTCGCGCACCGGGACCTCAAGCCCGAGAACCTGCTGCTCGACGAGGAGGGGCGGCTCAAGGTCACCGACTTCGGCCTCGCCGCGCTGCCCGAGCAGCTGCGACAGGACGGCCTCCTCCACACGCAGTGCGGCACCCCGGCGTACGTCGCGCCCGAGGTGCTCCGGAAGCGCGGCTATGACGGCGCCCGCGCCGACCTCTGGTCCTGCGGCGTCGTGCTCTACGTGCTCCTCTGCGGCTTCCTCCCGTTCCAGCACGAGAACTACGCCAAGATGTACCAGAAGATCTTCAAGGCGGAGTACCAGGTGCCGCCGTGGGTGTCCGGCGACGCGCGCCGCCTCATCGTCCGCCTGCTCGTCGTCGACCCGGCCAAGCGCATCTCCATCCCGGAGATCATGCGCACGCCATGGTTCAAGAAGGGCTTCGTGCCGCCCGTCCCCACCTCCCCTGTCTCCCCCAAGAAATGGGAAGAAGACGATGTCCTCCTCGACGGCGGCGACTCCGGCGCCATGTCGCCCCGGACGTGCAACGCGTTCCAGCTCATATCCTCCATGTCCTCCGGGTTCGACCTGTCGGGGATGTTCGAGAGCGAGCAGAAGGCCGCCACGGTGTTCACGTCGCGCGCGCCGGCGGCCACCGTCATCCAGAAGCTGGAGGCCGTGGGGCGATCGCTGGGTTACAGCGCCACG AGAGGGAAAGGGTGGAAGCTGAGGTTGGAGGCGACGGCGGACGG AGCAAACGGGCGGCTCGCGGTCACCGTCG AGGCGCTCG AGGTGGCCGCCGACGTCGCGGTGGTCGAGTTCGCGCACGACGCCGGCGACGAGCTCGAGTTCAACAAGTTCTGCGCCGTCGACGTGCGGCCGGGGCTCGCCGACATTGTCTGGGCGTGGCAGGGCGACCGGCCGGCGGCGCCCGACGTTGCCGCCGCCACCGTCGAGTGCTCGCCGGCGTGATCAGAGCCGTCCGTTCAGCGCGACGTGAAATCTGTAGGATGTATTAGCTTTAGCTTCTTTGCTCGCGGTTATGTACAGGCCAAATCGAGAGATGTGTAAATACAAAAGTTTTG                                                                            ]
[+] EMBL CB640866             [   TCAAAACCGACCGCGTCCGTCCCCGGCGTCAAAACCATGTGCCCCCCCGCCCCATTCCTACGTGCTGCCGCGCGCCACATATTAATCAGCCGCACACCGTTGCCCGCCTACCACTACTACCACTGATCACACTTGCTACTACTACCACACATGGCGAGGAGAGCGCGGGAAGAGGAAGCGGATCATGTGGAGAGGAAGCTGGTGCTGGGGCGGTACGAGCTCGGGAGGCTGCTGGGGCAGGGCACGTTCGCCAAGGTGTACTACGGCCGTGACCTCCGGTCCGGTGAGAGCGTGGCGATCAAGGTGATCGACAAGGCGCGGCTCCGTCGCACGGAAGGGATGGTGGAGCAa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CB638820             [           AACCGCGTCCGTCCCCGGCGTCAAAACCATGTGCCCCCCCGCCCCATTCCTACGTGCTGCCGCGCGCCACATATTAATCAGCCGCACACCGTTGCCCGCCTACCACTACTACCACTGATCACACTTGCTACTACTACCACACATGGCGAGGAGAGCGCGGGAAGAGGAAGCGGATCAGGTGGAGAGGAAGCTGGTGCTGGGGCGGTACGAGCTCGGGAGGCTGCTGGGGCAGGGCACGTTCGCCAAGGTGTACTACGGCCGTGACCTCCGGTCCGGTGAGAGCGTGGCGATCAAAGTGATCGACAAGGCGCGGCTCCGTCGCACGGAAGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL AK061493             [                                                                                                                         ACCACTGATCACACTTGCTACTACTACCACACATGGCGAGGAGAGCGCGGGAAGAGGAAGCGGATCAGGTGGAGAGGAAGCTGGTGCTGGGGCGGTACGAGCTCGGGAGGCTGCTGGGGCAGGGCACGTTCGCCAAGGTGTACTACGGCCGTGACCTCCGGTCCGGTGAGAGCGTGGCGATCAAGGTGATCGACAAGGCGCGGCTCCGTCGCACGGAAGGGATGGTGGAGCAGCTGCGGCGTGAGATCTCCATCATGCGGATGGTGCGCCACCCCAACGTGGTGGGGATCCGCGAGGTGCTCGCCAGCCGCGCCCGCGTGTTCGTCGTCATGGAGTACGCCCGCGGCGGGGAGCTGTTCGCCAAGGTGGCGCGCGGGCGGCTCACCGAGGAGCACGCGAGGAGGTACTTCCAGCAGCTCGTCGCCGCCGTCGGGTTCTGCCACGGCCGCGGCGTCGCGCACCGGGACCTCAAGCCCGAGAACCTGCTGCTCGACGAGGAGGGGCGGCTCAAGGTCACCGACTTCGGCCTCGCCGCGCTGCCCGAGCAGCTGCGACAGGACGGCCTCCTCCACACGCAGTGCGGCACCCCGGCGTACGTCGCGCCCGAGGTGCTCCGGAAGCGCGGCTATGACGGCGCCCGCGCCGACCTCTGGTCCTGCGGCGTCGTGCTCTACGTGCTCCTCTGCGGCTTCCTCCCGTTCCAGCACGAGAACTACGCCAAGATGTACCAGAAGATCTTCAAGGCGGAGTACCAGGTGCCGCCGTGGGTGTCCGGCGACGCGCGCCGCCTCATCGTCCGCCTGCTCGTCGTCGACCCGGCCAAGCGCATCTCCATCCCGGAGATCATGCGCACGCCATGGTTCAAGAAGGGCTTCGTGCCGCCCGTCCCCACCTCCCCTGTCTCCCCCAAGAAATGGGAAGAAGACGATGTCCTCCTCGACGGCGGCGACTCCGGCGCCATGTCGCCCCGGACGTGCAACGCGTTCCAGCTCATATCCTCCATGTCCTCCGGGTTCGACCTGTCGGGGATGTTCGAGAGCGAGCAGAAGGCCGCCACGGTGTTCACGTCGCGCGCGCCGGCGGCCACCGTCATCCAGAAGCTGGAGGCCGTGGGGCGATCGCTGGGTTACAGCGCCACG AGAGGGAAAGGGTGGAAGCTGAGGTTGGAGGCGACGGCGGACGG AGCAAACGGGCGGCTCGCGGTCACCGTCG AGGCGCTCG AGGTGGCCGCCGACGTCGCGGTGGTCGAGTTCGCGCACGACGCCGGCGACGAGCTCGAGTTCAACAAGTTCTGCGCCGTCGACGTGCGGCCGGGGCTCGCCGACATTGTCTGGGCGTGGCAGGGCGACCGGCCGGCGGCGCCCGACGTTGCCGCCGCCACCGTCGAGTGCTCGCCGGCGTGATCAGAGCCGTCCGTTCAGCGCGACGTGAAATCTGTAGGATGTATTAGCTTTAGCTTCTTTGCTCGCGGTTATGTACAGGCCAAATCGAGAGATGTGTAAATACAAAAGTTTTG                                                                            ]
[+] EMBL AK100881             [                                                                                                                           CACTGATCACACTTGCTACTACTACCACACATGGCGAGGAGAGCGCGGGAAGAGGAAGCGGATCAGGTGGAGAGGAAGCTGGTGCTGGGGCGGTACGAGCTCGGGAGGCTGCTGGGGCAGGGCACGTTCGCCAAGGTGTACTACGGCCGTGACCTCCGGTCCGGTGAGAGCGTGGCGATCAAGGTGATCGACAAGGCGCGGCTCCGTCGCACGGAAGGGATGGTGGAGCAGCTGCGGCGTGAGATCTCCATCATGCGGATGGTGCGCCACCCCAACGTGGTGGGGATCCGCGAGGTGCTCGCCAGCCGCGCCCGCGTGTTCGTCGTCATGGAGTACGCCCGCGGCGGGGAGCTGTTCGCCAAGGTGGCGCGCGGGCGGCTCACCGAGGAGCACGCGAGGAGGTACTTCCAGCAGCTCGTCGCCGCCGTCGGGTTCTGCCACGGCCGCGGCGTCGCGCACCGGGACCTCAAGCCCGAGAACCTGCTGCTCGACGAGGAGGGGCGGCTCAAGGTCACCGACTTCGGCCTCGCCGCGCTGCCCGAGCAGCTGCGACAGGACGGCCTCCTCCACACGCAGTGCGGCACCCCGGCGTACGTCGCGCCCGAGGTGCTCCGGAAGCGCGGCTATGACGGCGCCCGCGCCGACCTCTGGTCCTGCGGCGTCGTGCTCTACGTGCTCCTCTGCGGCTTCCTCCCGTTCCAGCACGAGAACTACGCCAAGATGTACCAGAAGATCTTCAAGGCGGAGTACCAGGTGCCGCCGTGGGTGTCCGGCGACGCGCGCCGCCTCATCGTCCGCCTGCTCGTCGTCGACCCGGCCAAGCGCATCTCCATCCCGGAGATCATGCGCACGCCATGGTTCAAGAAGGGCTTCGTGCCGCCCGTCCCCACCTCCCCTGTCTCCCCCAAGAAATGGGAAGAAGACGATGTCCTCCTCGACGGCGGCGACTCCGGCGCCATGTCGCCCCGGACGTGCAACGCGTTCCAGCTCATATCCTCCATGTCCTCCGGGTTCGACCTGTCGGGGATGTTCGAGAGCGAGCAGAAGGCCGCCACGGTGTTCACGTCGCGCGCGCCGGCGGCCACCGTCATCCAGAAGCTGGAGGCCGTGGGGCGATCGCTGGGTTACAGCGCCACG AGAGGGAAAGGGTGGAAGCTGAGGTTGGAGGCGACGGCGGACGG AGCAAACGGGCGGCTCGCGGTCACCGTCG AGGCGCTCG AGGTGGCCGCCGACGTCGCGGTGGTCGAGTTCGCGCACGACGCCGGCGACGAGCTCGAGTTCAACAAGTTCTGCGCCGTCGACGTGCGGCCGGGGCTCGCCGACATTGTCTGGGCGTGGCAGGGCGACCGGCCGGCGGCGCCCGACGTTGCCGCCGCCACCGTCGAGTGCTCGCCGGCGTGATCAGAGCCGTCCGTTCAGCGCGACGTGAAATCTGTAGGATGTATTAGCTTTAGCTTCTTTGCTCGCGGTTATGTACAGGCCAAATCGAGAGATGTGTAAATACAAAAGTTTTG                                                                            ]
[-] EMBL CB638821             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GGACGTGCAACGCGTTCCAGCTCATATCCTCCATGTCCTCCGGGTTCGACCTGTCGGGGATGTTCGAGAGCGAGCAGAAGGCCGCCACGGTGTTCACGTCGCGCGCGCCGGCGGCCACCGTCATCCAGAAGCTGGAGGCCGTGGGGCGATCGCTGGGTTACAGCGCCACG AGAGGGAAAGGGTGGAAGCTGAGGTTGGAGGCGACGGCGGACGG AGCAAACGGGCGGCTCGCGGTCACCGTCG AGGCGCTCG AGGTGGCCGCCGACGTCGCGGTGGTCGAGTTCGCGCACGACGCCGGCGACGAGCTCGAGTTCAACAAGTTCTGCGCCGTCGACGTGCGGCCGGGGCTCGCCGACATTGTCTGGGCGTGGCAGGGCGACCGGCCGGCGGCGCCCGACGTTGCCGCCGCCACCGTCGAGTGCTCGCCGGCGTGATCAGAGCCGTCCGTTCAGCGCGACGTGAAATCTGTAGGATGTATTAGCTTTAGCTTCTTTGCTCGCGGTTATGTACAGGCCAAATCGAGAGATGTGTAAATACAAAAGTTTTGTTACTTGATCAATCTAATTTGGGTTAAT                                                ]
[+] EMBL C98911               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GATCGCTGGGTTACAGCGCCACGAAGAGGG AANGGTGGAA CTGANGTTGGAGGCGACGGCGGACGGAAGCAAACGGGCGGCTCGCGGTCACCGTCGAAGGCGCTCGAAGGTGGCCGCCGACGTCGCGGTGGTCGAGTTCGCGCACGACGCCGGCNACGAGCTCGAGTTCAACAAGTTCTGCGCCGTCGACGTGCNGCCGGGGCTCGCCGACATTGTCTGGGCGTGGCAGGGCGACCGGCCGGCGGCGCCCGACGTTGCCGCCGCCACCGTCGAGTGCTCGCCGGCGTGATCAGAGCCGTCCGTTCAGCGCGACGTGAAATCTGTAGGATGTATTAGCTTTAGCTTCTTTGCTCGCGGTTATGTACAGGCCAAATCGAGAGATGTGTAAATACAAAAGTTTTGTTACTTGATCAATCTAATTTGGGTTAATGATTAGTATAAAA                                   ]
[+] EMBL AU071257             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             AAACGGGCGGCTCGCGGTCACCGTCG AGGCGCTCG AGGTGGCCGCCGACGTCGCGGTGGTCGAGTTCGCGCACGACGCCGGCGACGAGCTCGAGTTCAACAAGTTCTGCGCCGTCGACGTGCGGCCGGGGCTCGCCGACATTGTCTGGGCGTGGCAGGGCGACCGGCCGGCGGCGCCCGACGTTGCCGCCGCCACCGTCGAGTGCTCGCCGGCGTGATCAGAGCCGTCCGTTCAGCGCGACGTGAAATCTGTAGGATGTATTAGCTTTAGCTTCTTTGCTCGCGGTTATGTACAGGCCAAATCGAGAGATGTGTAAATACAAAAGTTTTGTTACTTGATCAATCTAATTTGGGTTAAAAAAAAAAAAAAAAGANAAA                             ]
[+] EMBL CF328668             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TAGGATGTATTAGCTTTAGCTTCTTTGCTCGCGGTTATGTACAGGCCAAATCGAGAGATGTGTAAATACAAAAGTTTTGTTACTTGATCAATCTAATTTGGGTTAATGATTAGTATAATTGATTATGGCAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_13310#0 GCCTCAAAACCAACCGCGTCCGTCCCCGGCGTCAAAACCATGTGCCCCCCCGCCCCATTC CTACGTGCTGCCGCGCGCCACATATTAATCAGCCGCACACCGTTGCCCGCCTACCACTAC TACCACTGATCACACTTGCTACTACTACCACACATGGCGAGGAGAGCGCGGGAAGAGGAA GCGGATCAGGTGGAGAGGAAGCTGGTGCTGGGGCGGTACGAGCTCGGGAGGCTGCTGGGG CAGGGCACGTTCGCCAAGGTGTACTACGGCCGTGACCTCCGGTCCGGTGAGAGCGTGGCG ATCAAGGTGATCGACAAGGCGCGGCTCCGTCGCACGGAAGGGATGGTGGAGCAGCTGCGG CGTGAGATCTCCATCATGCGGATGGTGCGCCACCCCAACGTGGTGGGGATCCGCGAGGTG CTCGCCAGCCGCGCCCGCGTGTTCGTCGTCATGGAGTACGCCCGCGGCGGGGAGCTGTTC GCCAAGGTGGCGCGCGGGCGGCTCACCGAGGAGCACGCGAGGAGGTACTTCCAGCAGCTC GTCGCCGCCGTCGGGTTCTGCCACGGCCGCGGCGTCGCGCACCGGGACCTCAAGCCCGAG AACCTGCTGCTCGACGAGGAGGGGCGGCTCAAGGTCACCGACTTCGGCCTCGCCGCGCTG CCCGAGCAGCTGCGACAGGACGGCCTCCTCCACACGCAGTGCGGCACCCCGGCGTACGTC GCGCCCGAGGTGCTCCGGAAGCGCGGCTATGACGGCGCCCGCGCCGACCTCTGGTCCTGC GGCGTCGTGCTCTACGTGCTCCTCTGCGGCTTCCTCCCGTTCCAGCACGAGAACTACGCC AAGATGTACCAGAAGATCTTCAAGGCGGAGTACCAGGTGCCGCCGTGGGTGTCCGGCGAC GCGCGCCGCCTCATCGTCCGCCTGCTCGTCGTCGACCCGGCCAAGCGCATCTCCATCCCG GAGATCATGCGCACGCCATGGTTCAAGAAGGGCTTCGTGCCGCCCGTCCCCACCTCCCCT GTCTCCCCCAAGAAATGGGAAGAAGACGATGTCCTCCTCGACGGCGGCGACTCCGGCGCC ATGTCGCCCCGGACGTGCAACGCGTTCCAGCTCATATCCTCCATGTCCTCCGGGTTCGAC CTGTCGGGGATGTTCGAGAGCGAGCAGAAGGCCGCCACGGTGTTCACGTCGCGCGCGCCG GCGGCCACCGTCATCCAGAAGCTGGAGGCCGTGGGGCGATCGCTGGGTTACAGCGCCACG AGAGGGAAAGGGTGGAAGCTGAGGTTGGAGGCGACGGCGGACGGAGCAAACGGGCGGCTC GCGGTCACCGTCGAGGCGCTCGAGGTGGCCGCCGACGTCGCGGTGGTCGAGTTCGCGCAC GACGCCGGCGACGAGCTCGAGTTCAACAAGTTCTGCGCCGTCGACGTGCGGCCGGGGCTC GCCGACATTGTCTGGGCGTGGCAGGGCGACCGGCCGGCGGCGCCCGACGTTGCCGCCGCC ACCGTCGAGTGCTCGCCGGCGTGATCAGAGCCGTCCGTTCAGCGCGACGTGAAATCTGTA GGATGTATTAGCTTTAGCTTCTTTGCTCGCGGTTATGTACAGGCCAAATCGAGAGATGTG TAAATACAAAAGTTTTGTTACTTGATCAATCTAATTTGGGTTAATGATTAGTATAAAAGA NAAAGGCAAAAAAAAAAAAAAAAAAAAAAAAAA



consensusID : consensus_13310#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1222
fasta sequence
                              [CGGATCAGGTGGAGAGGAAGCTGGTGCTGGGGCGGTACGAGCTCGGGAGGCTGCTGGGGCAGGGCACGTTCGCCAAGGTGTACTACGGCCGTGACCTCCGGTCCGGTGAGAGCGTGGCGATCAAGGTGATCGACAAGGCGCGGCTCCGTCGCACGGAAGGGATGGTGGAGCAGCTGCGGCGTGAGATCTCCATCATGCGGATGGTGCGCCACCCCAACGTGGTGGGGATCCGCGAGGTGCTCGCCAGCCGCGCCCGCGTGTTCGTCGTCATGGAGTACGCCCGCGGCGGGGAGCTGTTCGCCAAGGTGGCGCGCGGGCGGCTCACCGAGGAGCACGCGAGGAGGTACTTCCAGCAGCTCGTCGCCGCCGTCGGGTTCTGCCACGGCCGCGGCGTCGCGCACCGGGACCTCAAGCCCGAGAACCTGCTGCTCGACGAGGAGGGGCGGCTCAAGGTCACCGACTTCGGCCTCGCCGCGCTGCCCGAGCAGCTGCGACAGGACGGCCTCCTCCACACGCAGTGCGGCACCCCGGCGTACGTCGCGCCCGAGGTGCTCCGGAAGCGCGGCTATGACGGCGCCCGCGCCGACCTCTGGTCCTGCGGCGTCGTGCTCTACGTGCTCCTCTGCGGCTTCCTCCCGTTCCAGCACGAGAACTACGCCAAGATGTACCAGAAGATCTTCAAGGCGGAGTACCAGGTGCCGCCGTGGGTGTCCGGCGACGCGCGCCGCCTCATCGTCCGCCTGCTCGTCGTCGACCCGGCCAAGCGCATCTCCATCCCGGAGATCATGCGCACGCCATGGTTCAAGAAGGGCTTCGTGCCGCCCGTCCCCACCTCCCCTGTCTCCCCCAAGAAATGGGAAGAAGACGATGTCCTCCTCGACGGCGGCGACTCCGGCGCCATGTCGCCCCGGACGTGCAACGCGTTCCAGCTCATATCCTCCATGTCCTCCGGGTTCGACCTGTCGGGGATGTTCGAGAGCGAGCAGAAGGCCGCCACGGTGTTCACGTCGCGCGCGCCGGCGGCCACCGTCATCCAGAAGCTGGAGGCCGTGGGGCGATCGCTGGGTTACAGCGCCACGAGAGGGAAAGGGTGGAAGCTGAGGTTGGAGGCGACGGCGTCCGTTCAGCGCGACGTGAAATCTGTAGGATGTATTAGCTTTAGCTTCTTTGCTCGCGGTTATGTACAGGCCAAATCGAGAGATGTGTAAATACAAAAGTTTTG]

[+] EMBL AK119760             [CGGATCAGGTGGAGAGGAAGCTGGTGCTGGGGCGGTACGAGCTCGGGAGGCTGCTGGGGCAGGGCACGTTCGCCAAGGTGTACTACGGCCGTGACCTCCGGTCCGGTGAGAGCGTGGCGATCAAGGTGATCGACAAGGCGCGGCTCCGTCGCACGGAAGGGATGGTGGAGCAGCTGCGGCGTGAGATCTCCATCATGCGGATGGTGCGCCACCCCAACGTGGTGGGGATCCGCGAGGTGCTCGCCAGCCGCGCCCGCGTGTTCGTCGTCATGGAGTACGCCCGCGGCGGGGAGCTGTTCGCCAAGGTGGCGCGCGGGCGGCTCACCGAGGAGCACGCGAGGAGGTACTTCCAGCAGCTCGTCGCCGCCGTCGGGTTCTGCCACGGCCGCGGCGTCGCGCACCGGGACCTCAAGCCCGAGAACCTGCTGCTCGACGAGGAGGGGCGGCTCAAGGTCACCGACTTCGGCCTCGCCGCGCTGCCCGAGCAGCTGCGACAGGACGGCCTCCTCCACACGCAGTGCGGCACCCCGGCGTACGTCGCGCCCGAGGTGCTCCGGAAGCGCGGCTATGACGGCGCCCGCGCCGACCTCTGGTCCTGCGGCGTCGTGCTCTACGTGCTCCTCTGCGGCTTCCTCCCGTTCCAGCACGAGAACTACGCCAAGATGTACCAGAAGATCTTCAAGGCGGAGTACCAGGTGCCGCCGTGGGTGTCCGGCGACGCGCGCCGCCTCATCGTCCGCCTGCTCGTCGTCGACCCGGCCAAGCGCATCTCCATCCCGGAGATCATGCGCACGCCATGGTTCAAGAAGGGCTTCGTGCCGCCCGTCCCCACCTCCCCTGTCTCCCCCAAGAAATGGGAAGAAGACGATGTCCTCCTCGACGGCGGCGACTCCGGCGCCATGTCGCCCCGGACGTGCAACGCGTTCCAGCTCATATCCTCCATGTCCTCCGGGTTCGACCTGTCGGGGATGTTCGAGAGCGAGCAGAAGGCCGCCACGGTGTTCACGTCGCGCGCGCCGGCGGCCACCGTCATCCAGAAGCTGGAGGCCGTGGGGCGATCGCTGGGTTACAGCGCCACGAGAGGGAAAGGGTGGAAGCTGAGGTTGGAGGCGACGGCGTCCGTTCAGCGCGACGTGAAATCTGTAGGATGTATTAGCTTTAGCTTCTTTGCTCGCGGTTATGTACAGGCCAAATCGAGAGATGTGTAAATACAAAAGTTTTG]
[+] EMBL C98910               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    AGATGTACCAGAAGATCTTCAAGGCGGAGTACCAGGTGCCGCCGTGGGTGTCCGGCGACGCGCGCCGCCTCATCGTCCGCCTGCTCGTCGTCGACCCGGCCAAGCGCATCTCCATCCCGGAGATCATGCGCACGCCATGGTTCAAGAAGGGCTTCGTGCCGCCCGTCCCCACNTCCCCTGTCTCCCCCAAGAAATGGGAAGAAGACGATGTCCTCCTCGACGGCGGCGACTCCGGCG CATGTCG CCCGGACGTGCAACGCGTTCCAGCTCATATCCTCCATGTCCTCCGGGTTCGACCTGTCGGGGATGTTCGAGAGCGAGCAGAAGGCCGCCACGGTGTTCACGTCGCGCGCGCCGGCGGCCAACGTCATCCAGAAGCTTGAAGCCGTTGGGCGATCGCTNGGTTA AACGCCACGAGAGGGAAA GGTTGAA CTTAAGTTGa                                                                                                                   ]


>consensus_13310#1 CGGATCAGGTGGAGAGGAAGCTGGTGCTGGGGCGGTACGAGCTCGGGAGGCTGCTGGGGC AGGGCACGTTCGCCAAGGTGTACTACGGCCGTGACCTCCGGTCCGGTGAGAGCGTGGCGA TCAAGGTGATCGACAAGGCGCGGCTCCGTCGCACGGAAGGGATGGTGGAGCAGCTGCGGC GTGAGATCTCCATCATGCGGATGGTGCGCCACCCCAACGTGGTGGGGATCCGCGAGGTGC TCGCCAGCCGCGCCCGCGTGTTCGTCGTCATGGAGTACGCCCGCGGCGGGGAGCTGTTCG CCAAGGTGGCGCGCGGGCGGCTCACCGAGGAGCACGCGAGGAGGTACTTCCAGCAGCTCG TCGCCGCCGTCGGGTTCTGCCACGGCCGCGGCGTCGCGCACCGGGACCTCAAGCCCGAGA ACCTGCTGCTCGACGAGGAGGGGCGGCTCAAGGTCACCGACTTCGGCCTCGCCGCGCTGC CCGAGCAGCTGCGACAGGACGGCCTCCTCCACACGCAGTGCGGCACCCCGGCGTACGTCG CGCCCGAGGTGCTCCGGAAGCGCGGCTATGACGGCGCCCGCGCCGACCTCTGGTCCTGCG GCGTCGTGCTCTACGTGCTCCTCTGCGGCTTCCTCCCGTTCCAGCACGAGAACTACGCCA AGATGTACCAGAAGATCTTCAAGGCGGAGTACCAGGTGCCGCCGTGGGTGTCCGGCGACG CGCGCCGCCTCATCGTCCGCCTGCTCGTCGTCGACCCGGCCAAGCGCATCTCCATCCCGG AGATCATGCGCACGCCATGGTTCAAGAAGGGCTTCGTGCCGCCCGTCCCCACCTCCCCTG TCTCCCCCAAGAAATGGGAAGAAGACGATGTCCTCCTCGACGGCGGCGACTCCGGCGCCA TGTCGCCCCGGACGTGCAACGCGTTCCAGCTCATATCCTCCATGTCCTCCGGGTTCGACC TGTCGGGGATGTTCGAGAGCGAGCAGAAGGCCGCCACGGTGTTCACGTCGCGCGCGCCGG CGGCCACCGTCATCCAGAAGCTGGAGGCCGTGGGGCGATCGCTGGGTTACAGCGCCACGA GAGGGAAAGGGTGGAAGCTGAGGTTGGAGGCGACGGCGTCCGTTCAGCGCGACGTGAAAT CTGTAGGATGTATTAGCTTTAGCTTCTTTGCTCGCGGTTATGTACAGGCCAAATCGAGAG ATGTGTAAATACAAAAGTTTTG



consensusID : consensus_13310#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 184
fasta sequence
                              [ATGGATTGAAGGAGTAAAAAGAAATTTGTAGGATGTATTAGCTTTAGTTTTTTTGCTCGCGGTTATGTCCAGGCCAAATCGAAAAATGTGTAAATACAAAAGTTTTGTTACTTGATCAATTTAATTTGGGTTAATGATTAGTATAATTGATTAGGGCAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CF328667             [ATGGATTGAAGGAGTAAAAAGAAATTTGTAGGATGTATTAGCTTTAGTTTTTTTGCTCGCGGTTATGTCCAGGCCAAATCGAAAAATGTGTAAATACAAAAGTTTTGTTACTTGATCAATTTAATTTGGGTTAATGATTAGTATAATTGATTAGGGCAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_13310#2 ATGGATTGAAGGAGTAAAAAGAAATTTGTAGGATGTATTAGCTTTAGTTTTTTTGCTCGC GGTTATGTCCAGGCCAAATCGAAAAATGTGTAAATACAAAAGTTTTGTTACTTGATCAAT TTAATTTGGGTTAATGATTAGTATAATTGATTAGGGCAAAAAAAAAAAAAAAAAAAAAAA AAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13310#0      GCCTCAAAACCAACCGCGTCCGTCCCCGGCGTCAAAACCATGTGCCCCCCCGCCCCATTC 60
consensus_13310#1      ------------------------------------------------------------
consensus_13310#2      ------------------------------------------------------------
                                                                                   

consensus_13310#0      CTACGTGCTGCCGCGCGCCACATATTAATCAGCCGCACACCGTTGCCCGCCTACCACTAC 120
consensus_13310#1      ------------------------------------------------------------
consensus_13310#2      ------------------------------------------------------------
                                                                                   

consensus_13310#0      TACCACTGATCACACTTGCTACTACTACCACACATGGCGAGGAGAGCGCGGGAAGAGGAA 180
consensus_13310#1      ------------------------------------------------------------
consensus_13310#2      ------------------------------------------------------------
                                                                                   

consensus_13310#0      GCGGATCAGGTGGAGAGGAAGCTGGTGCTGGGGCGGTACGAGCTCGGGAGGCTGCTGGGG 240
consensus_13310#1      -CGGATCAGGTGGAGAGGAAGCTGGTGCTGGGGCGGTACGAGCTCGGGAGGCTGCTGGGG 59
consensus_13310#2      ------------------------------------------------------------
                                                                                   

consensus_13310#0      CAGGGCACGTTCGCCAAGGTGTACTACGGCCGTGACCTCCGGTCCGGTGAGAGCGTGGCG 300
consensus_13310#1      CAGGGCACGTTCGCCAAGGTGTACTACGGCCGTGACCTCCGGTCCGGTGAGAGCGTGGCG 119
consensus_13310#2      ------------------------------------------------------------
                                                                                   

consensus_13310#0      ATCAAGGTGATCGACAAGGCGCGGCTCCGTCGCACGGAAGGGATGGTGGAGCAGCTGCGG 360
consensus_13310#1      ATCAAGGTGATCGACAAGGCGCGGCTCCGTCGCACGGAAGGGATGGTGGAGCAGCTGCGG 179
consensus_13310#2      ------------------------------------------------------------
                                                                                   

consensus_13310#0      CGTGAGATCTCCATCATGCGGATGGTGCGCCACCCCAACGTGGTGGGGATCCGCGAGGTG 420
consensus_13310#1      CGTGAGATCTCCATCATGCGGATGGTGCGCCACCCCAACGTGGTGGGGATCCGCGAGGTG 239
consensus_13310#2      ------------------------------------------------------------
                                                                                   

consensus_13310#0      CTCGCCAGCCGCGCCCGCGTGTTCGTCGTCATGGAGTACGCCCGCGGCGGGGAGCTGTTC 480
consensus_13310#1      CTCGCCAGCCGCGCCCGCGTGTTCGTCGTCATGGAGTACGCCCGCGGCGGGGAGCTGTTC 299
consensus_13310#2      ------------------------------------------------------------
                                                                                   

consensus_13310#0      GCCAAGGTGGCGCGCGGGCGGCTCACCGAGGAGCACGCGAGGAGGTACTTCCAGCAGCTC 540
consensus_13310#1      GCCAAGGTGGCGCGCGGGCGGCTCACCGAGGAGCACGCGAGGAGGTACTTCCAGCAGCTC 359
consensus_13310#2      ------------------------------------------------------------
                                                                                   

consensus_13310#0      GTCGCCGCCGTCGGGTTCTGCCACGGCCGCGGCGTCGCGCACCGGGACCTCAAGCCCGAG 600
consensus_13310#1      GTCGCCGCCGTCGGGTTCTGCCACGGCCGCGGCGTCGCGCACCGGGACCTCAAGCCCGAG 419
consensus_13310#2      ------------------------------------------------------------
                                                                                   

consensus_13310#0      AACCTGCTGCTCGACGAGGAGGGGCGGCTCAAGGTCACCGACTTCGGCCTCGCCGCGCTG 660
consensus_13310#1      AACCTGCTGCTCGACGAGGAGGGGCGGCTCAAGGTCACCGACTTCGGCCTCGCCGCGCTG 479
consensus_13310#2      ------------------------------------------------------------
                                                                                   

consensus_13310#0      CCCGAGCAGCTGCGACAGGACGGCCTCCTCCACACGCAGTGCGGCACCCCGGCGTACGTC 720
consensus_13310#1      CCCGAGCAGCTGCGACAGGACGGCCTCCTCCACACGCAGTGCGGCACCCCGGCGTACGTC 539
consensus_13310#2      ------------------------------------------------------------
                                                                                   

consensus_13310#0      GCGCCCGAGGTGCTCCGGAAGCGCGGCTATGACGGCGCCCGCGCCGACCTCTGGTCCTGC 780
consensus_13310#1      GCGCCCGAGGTGCTCCGGAAGCGCGGCTATGACGGCGCCCGCGCCGACCTCTGGTCCTGC 599
consensus_13310#2      ------------------------------------------------------------
                                                                                   

consensus_13310#0      GGCGTCGTGCTCTACGTGCTCCTCTGCGGCTTCCTCCCGTTCCAGCACGAGAACTACGCC 840
consensus_13310#1      GGCGTCGTGCTCTACGTGCTCCTCTGCGGCTTCCTCCCGTTCCAGCACGAGAACTACGCC 659
consensus_13310#2      ------------------------------------------------------------
                                                                                   

consensus_13310#0      AAGATGTACCAGAAGATCTTCAAGGCGGAGTACCAGGTGCCGCCGTGGGTGTCCGGCGAC 900
consensus_13310#1      AAGATGTACCAGAAGATCTTCAAGGCGGAGTACCAGGTGCCGCCGTGGGTGTCCGGCGAC 719
consensus_13310#2      ------------------------------------------------------------
                                                                                   

consensus_13310#0      GCGCGCCGCCTCATCGTCCGCCTGCTCGTCGTCGACCCGGCCAAGCGCATCTCCATCCCG 960
consensus_13310#1      GCGCGCCGCCTCATCGTCCGCCTGCTCGTCGTCGACCCGGCCAAGCGCATCTCCATCCCG 779
consensus_13310#2      ------------------------------------------------------------
                                                                                   

consensus_13310#0      GAGATCATGCGCACGCCATGGTTCAAGAAGGGCTTCGTGCCGCCCGTCCCCACCTCCCCT 1020
consensus_13310#1      GAGATCATGCGCACGCCATGGTTCAAGAAGGGCTTCGTGCCGCCCGTCCCCACCTCCCCT 839
consensus_13310#2      ------------------------------------------------------------
                                                                                   

consensus_13310#0      GTCTCCCCCAAGAAATGGGAAGAAGACGATGTCCTCCTCGACGGCGGCGACTCCGGCGCC 1080
consensus_13310#1      GTCTCCCCCAAGAAATGGGAAGAAGACGATGTCCTCCTCGACGGCGGCGACTCCGGCGCC 899
consensus_13310#2      ------------------------------------------------------------
                                                                                   

consensus_13310#0      ATGTCGCCCCGGACGTGCAACGCGTTCCAGCTCATATCCTCCATGTCCTCCGGGTTCGAC 1140
consensus_13310#1      ATGTCGCCCCGGACGTGCAACGCGTTCCAGCTCATATCCTCCATGTCCTCCGGGTTCGAC 959
consensus_13310#2      ---ATGGATTGAAGGAGTAAAAAGA---AATTTGTAGGATGTATTAGCTTTAGTTTTTTT 54
                            *    * * * * **   *    *  *  **   *  **   **   * **    

consensus_13310#0      -CTGTCGGGGATGTTCGAGAGCGAGCAGAAGGCCGCCACGGTGTTCACGTCGCGCGCGCC 1199
consensus_13310#1      -CTGTCGGGGATGTTCGAGAGCGAGCAGAAGGCCGCCACGGTGTTCACGTCGCGCGCGCC 1018
consensus_13310#2      GCTCGCGGTTATGTCC-AGGCCAAATCGAAAAATGTGTAAATACAAAAGTTTTGT-TACT 112
                        **  ***  **** * **  * *   ***    *      *    * **   *    * 

consensus_13310#0      GGCGGCCACCGTCATCCAGAAGCTGGAGGCCGTGGGGCGATCGCTGGGTTACAGCGCCAC 1259
consensus_13310#1      GGCGGCCACCGTCATCCAGAAGCTGGAGGCCGTGGGGCGATCGCTGGGTTACAGCGCCAC 1078
consensus_13310#2      --TGATCAATTTAATTTGG--GTTAATGAT--TAGTATAATTGATTAGG-GCAAAAAAAA 165
                          *  **   * **   *  * *   *    * *    ** * *  *   **     * 

consensus_13310#0      GAGAGGGAAAGGGTGGAAGCTGAGGTTGGAGGCGACGGCGGACGGAGCAAACGGGCGGCT 1319
consensus_13310#1      GAGAGGGAAAGGGTGGAAGCTGAGGTTGGAGGCGACGGCGTCCGT--TCAGC--GCGACG 1134
consensus_13310#2      AAAAAAAAAAAAAAAAAAA----------------------------------------- 184
                        * *   ***      **                                          

consensus_13310#0      CGCGGTCACCGTCGAGGCGCTCGAGGTGGCCGCCGACGTCGCGGTGGTCGAGTTCGCGCA 1379
consensus_13310#1      TGAAATCTGTAG-GATGTATTAGCTTTAGCTTCTTTGCTCGCGGTTAT---GTACAGGC- 1189
consensus_13310#2      ------------------------------------------------------------
                                                                                   

consensus_13310#0      CGACGCCGGCGACGAGCTCGAGTTCAACAAGTTCTGCGCCGTCGACGTGCGGCCGGGGCT 1439
consensus_13310#1      CAAATCGAGAGATGTG--TAAATACAA-AAGTTTTG------------------------ 1222
consensus_13310#2      ------------------------------------------------------------
                                                                                   

consensus_13310#0      CGCCGACATTGTCTGGGCGTGGCAGGGCGACCGGCCGGCGGCGCCCGACGTTGCCGCCGC 1499
consensus_13310#1      ------------------------------------------------------------
consensus_13310#2      ------------------------------------------------------------
                                                                                   

consensus_13310#0      CACCGTCGAGTGCTCGCCGGCGTGATCAGAGCCGTCCGTTCAGCGCGACGTGAAATCTGT 1559
consensus_13310#1      ------------------------------------------------------------
consensus_13310#2      ------------------------------------------------------------
                                                                                   

consensus_13310#0      AGGATGTATTAGCTTTAGCTTCTTTGCTCGCGGTTATGTACAGGCCAAATCGAGAGATGT 1619
consensus_13310#1      ------------------------------------------------------------
consensus_13310#2      ------------------------------------------------------------
                                                                                   

consensus_13310#0      GTAAATACAAAAGTTTTGTTACTTGATCAATCTAATTTGGGTTAATGATTAGTATAAAAG 1679
consensus_13310#1      ------------------------------------------------------------
consensus_13310#2      ------------------------------------------------------------
                                                                                   

consensus_13310#0      ANAAAGGCAAAAAAAAAAAAAAAAAAAAAAAAAA 1713
consensus_13310#1      ----------------------------------
consensus_13310#2      ----------------------------------
                                                         




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)