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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13312#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 2206 fasta sequence
[AAAAAGGCGAATAATTCCGCTGTTGCTTCGCTGCCTTTTGCCTTCTTCCTCATCCTCTCCANCACCACCGCCACCGGCCGACGCATCTCCGATTCGATTTCGCCTTCCCACGAATCTATCTCCCCCCGAGTCCCCAGCGAGATGGCCACGTCGTTCGACCGCTGGGAGAAGGACCCCTTCTTCCCGGCCGCCGAGGAGGTGCAGGAGTCCGCCGACCGGATGGAGTCGGTGTACAGGAGGTGGTTGCAGGAGAGGAAAGAAGTAGGTGGCGGCGCGGTGGAGACGGCGGCGGAACGTGGTGGTGGTGGATGGGGGCGAGCCGCTGGGGATCTCCGCCGCGAGCTGCACACGGCGCTCGGCACCGCCAAGTGGCAGCTTGATGAGTTGCAGCGGGCTATTAAATCAAATTATAGTGTTGTGTTAGCTGGCAAAGATACTAGAGCTCGGCATGATGACTTTGTTTCAGCCATTGGGCATCGTATCCTAGAGGTGGAGAAGTTCTTGAAAGAATCCAATACTACTGAAGGGCGTGGCCCTCTTAGCTGGGTTCGCTTGGATGAGGGTGAACGTGAAGAGTTAGCTCATTTCCTTTCAGCAGGAACTTATCAAAAACGTGATGAGGTGGTTACAATTACATCTGCTGGTGACATTGAGGTTGGTAGCAATGCAAGAAGGGTGAAAAAGGGTGTTTCAATTGATAGTTCGAATGATTCTTCGGGCTCAG-CAGAGTCAGGTTTAGTGTCAACTAAGGAGGAGA-CAGCTCCAGGTCATAGGAGAACGGCAAGTGCCTATG-CTGATATT-GGATCATGG-ACTATTACAATTCCTGATGAGG-CCAATGGCATCGAT-GAACAATCATTTGATGATCTGCCCAAGGTACCTTTGGTTAAGAG-CCCTAG-CTCTTCTGTATTAATGAATG-CCTTCCAATCAAAGAC-AAGAATG-AAGACAAAGAATGGAGCC-AAGAAGTTGG-CTGGAGCTGA-CCAACAGGATGTTGTGG-AAACTCTT-CCTCTGACAAATTCTCGCTCGTGCCAGGGGTTTGATGGG--TTGTTTCAAAGAAGCAAAAGTTGCTTGAGCACCTCTGATGATGAGGATAACTGCAATAAGAAACTTTATGGTTGCCTTGGTGCATTCCGTCGGCTACTTCAGAGGTCTCAGTATCAAGTTCAATATGGACGTCCTATTCAGTTACTTATCCTAGCAATTGTTGTTTTACTAGTCTTAATTTATGCCATGAAGGCAATTTTGTGACTTTTTTGATCAACTAGTGTCTCACGATTGACTTGCACTTCTTCATCAGCAGTCTGTAAGGTGTATGACAATTCATAGCTGATGAAACTAAAAGGGGAAGTGGTATTGTTTCTCTAGCTAGTTGAATGCCAGTGACAGTGAACACTGTTTTGTATGTTCGAAGGGATTCTATCATAACTCGCAAGATTGTCTTGGCTATGAAGAAACAACCTGACATGGGAAGCACAACATTTAGCAACCCAATATAGCAAAATCAGTGAAGGATTGATTGTATGGACCGGCAGATCAT-TT-CGTGTGCC--TTAAGCCCAGAGGAACTGAACAATCA-TCTTCATATACCA-GTTTTGCTGATGCTGCATCTGCAACATTTTAAACA-GTCTGGTGCAGTACTGCAGCCTTGTTAACCTGTGCAATTCAGCAGTACATAGAGCTAGAATGCTGATGCTACAACTGGCAAACAACAGTTTTGTGCACGCAGCTGTGGGGTTTGCCTGGATAATTGAGTGGCATCTCCATGTACTGTATTCCAATTACTGATGTCTCAAGTATAGTGCTAGGTGGCATGAACTTTGCGGAAGAATTTGAGTACCTATATTTTGATGCTATAGATTGGCTTGGAGAAGGCTGAAAATTCATCTATTAACACAAGTATCGCAAGAGCTGCAGGACTACAGGTCTTGCAGCCTGTACAGATGGTTGTGTTTTGTACACTAGAGGTGCAGTTTAGAAGAACAGAAAAATTCTTCTGTTCTTAGACATTGGAGTAACTTTTACCACACGATTGGCTTGTAACCTGTAAATAACTACTGCTTCAAATGAGCACCTGTTCTTACAAATTTGATAATGTTGGGTGTCGGTCTGCACTGCAACATCCAAAAAACCTTTGTAAGTAAGCACATGTCAACAGCTTGAAATTCAACAGACTTCTGATAAAACGCACTGGTTCATGTTGCGTTAAAAAAGA]
[+] EMBL OSS14607A [AAAAAGGCGAATAATTCCGCTGTTGCTTCGCTGCCTTTTGCCTTCTTCCTCATCCTCTCCANCACCACCGCCACCGGCCGACGCATCTCCGATTCGATTTCGCCTTCCCACGAATCTATCTCCCCCCGAGTCCCCAGCGAGATGNCCACGTCGTTCGACCGNTGGGAGAAGGACCCCTTCTTCCCGGCCGNCGAGNAGGTGCAGGAGTCCGCCGACCGGATGGAGTCGGTGTACAGNAGGTGGTTGCAGGAGAGGAAAGAAGTAGGTGGCGGGGCGGTGGAGACGGCGGNGGAACGTGGTGGTGGTGGATNGGGGCGAACCGCTGGG ]
[+] EMBL AK100724 [ GCCTTTTGCCTTCTTCCTCCTCCTCTCCACCACCACCGCCACCGGCCGACGCATCTCCGATTCGATTTCGCCTTCCCACGAATCTATCTCCCCCCGAGTCCCCAGCGAGATGGCCACGTCGTTCGACCGCTGGGAGAAGGACCCCTTCTTCCCGGCCGCCGAGGAGGTGCAGGAGTCCGCCGACCGGATGGAGTCGGTGTACAGGAGGTGGTTGCAGGAGAGGAAAGAAGTAGGTGGCGGCGCGGTGGAGACGGCGGCGGAACGTGGTGGTGGTGGATGGGGGCGAGCCGCTGGGGATCTCCGCCGCGAGCTGCACACGGCGCTCGGCACCGCCAAGTGGCAGCTTGATGAGTTGCAGCGGGCTATTAAATCAAATTATAGTGTTGTGTTAGCTGGCAAAGATACTAGAGCTCGGCATGATGACTTTGTTTCAGCCATTGGGCATCGTATCCTAGAGGTGGAGAAGTTCTTGAAAGAATCCAATACTACTGAAGGGCGTGGCCCTCTTAGCTGGGTTCGCTTGGATGAGGGTGAACGTGAAGAGTTAGCTCATTTCCTTTCAGCAGGAACTTATCAAAAACGTGATGAGGTGGTTACAATTACATCTGCTGGTGACATTGAGGTTGGTAGCAATGCAAGAAGGGTGAAAAAGGGTGTTTCAATTGATAGTTCGAATGATTCTTCGGGCTCAG CAGAGTCAGGTTTAGTGTCAACTAAGGAGGAGA CAGCTCCAGGTCATAGGAGAACGGCAAGTGCCTATG CTGATATT GGATCATGG ACTATTACAATTCCTGATGAGG CCAATGGCATCGAT GAACAATCATTTGATGATCTGCCCAAGGTACCTTTGGTTAAGAG CCCTAG CTCTTCTGTATTAATGAATG CCTTCCAATCAAAGAC AAGAATG AAGACAAAGAATGGAGCC AAGAAGTTGG CTGGAGCTGA CCAACAGGATGTTGTGG AAACTCTT CCTCTGACAAATTCTCGCTCGTGCCAGGGGTTTGATGGG TTGTTTCAAAGAAGCAAAAGTTGCTTGAGCACCTCTGATGATGAGGATAACTGCAATAAGAAACTTTATGGTTGCCTTGGTGCATTCCGTCGGCTACTTCAGAGGTCTCAGTATCAAGTTCAATATGGACGTCCTATTCAGTTACTTATCCTAGCAATTGTTGTTTTACTAGTCTTAATTTATGCCATGAAGGCAATTTTGTGACTTTTTTGATCAACTAGTGTCTCACGATTGACTTGCACTTCTTCATCAGCAGTCTGTAAGGTGTATGACAATTCATAGCTGATGAAACTAAAAGGGGAAGTGGTATTGTTTCTCTAGCTAGTTGAATGCCAGTGACAGTGAACACTGTTTTGTATGTTCGAAGGGATTCTATCATAACTCGCAAGATTGTCTTGGCTATGAAGAAACAACCTGACATGGGAAGCACAACATTTAGCAACCCAATATAGCAAAATCAGTGAAGGATTGATTGTATGGACCGGCAGATCAT TT CGTGTGCC TTAAGCCCAGAGGAACTGAACAATCA TCTTCATATACCA GTTTTGCTGATGCTGCATCTGCAACATTTTAAACA GTCTGGTGCAGTACTGCAGCCTTGTTAACCTGTGCAATTCAGCAGTACATAGAGCTAGAATGCTGATGCTACAACTGGCAAACAACAGTTTTGTGCACGCAGCTGTGGGGTTTGCCTGGATAATTGAGTGGCATCTCCATGTACTGTATTCCAATTACTGATGTCTCAAGTATAGTGCTAGGTGGCATGAACTTTGCGGAAGAATTTGAGTACCTATATTTTGATGCTATAGATTGGCTTGGAGAAGGCTGAAAATTCATCTATTAACACAAGTATCGCAAGAGCTGCAGGACTACAGGTCTTGCAGCCTGTACAGATGGTTGTGTTTTGTACACTAGAGGTGCAGTTTAGAAGAACAGAAAAATTCTTCTGTTCTTAGACATTGGAGTAACTTTTACCACACGATTGGCTTGTAACCTGTAAATAACTACTGCTTCAAATGAGCACCTGTTCTTACAAATTTGATAATGTTGGGTGTCGGTCTGCACTGCAACATCCAAAAAACCTTTGTAAGTAAGCACATGTCAACAGCTTGAAATTCAA ]
[+] EMBL CB662258 [ GCCGACGCATCTCCGATTCGATTTCGCCTTCCCACGAATCTATCTCCCCCCGAGTCCCCAGCGAGATGGCCACGTCGTTCGACCGCTGGGAGAAGGACCCCTTCTTCCCGGCCGCCGAGGAGGTGCAGGAGTCCGCCGACCGGATGGAGTCGGTGTACAGGAGGTGGTTGCAGGAGAGGAAAGAAGTAGGTGGCGGCGCGGTGGAGACGGCGGCGGAACGTGGTGGTGGTGGATGGGGGCGAGCCGCTGGGGATCTCCGCCGCGAGCTGCACACGGCGCTCGGCACCGCCAAGTGGCAGCTTGATGAGTTGCAGCGGGCTATTAAATCAAATTATAGTGTTGTGTTAGCTGGCAAAGATACTAGAGCTCGGCATGATGACTTTGTTTCAGCCATTGGGCATCGTATCCTAGAGGTGGAGAAGTTCTTGAAAGAATCCAATACTACTGAAGGGCGTGGCCCTCTTAGCTGGGTTCGCTTGGATGAGGGTGAACGTGAAGAGTTAGCTCATTTCCTTTCAGCAGGAACTTATCAAAAACGTGATGAGGTGGTTACAATTACATCTGCTGGTGACATTGAGGTTGGTAGCAATGCAAGAAGGGTGAAAAAGGGTGTTTCAATTGATAGTTCGAATGATTCTTCGGGCTCAG CAGAGTCAGGTTTAGTGTCAACTAAGGAGGAGA CAGCTCCAGGTCATAGGAGAACGGCAAGTGCCTATG CTGATATT GGATCATGG ACTATTACAATTCCTGATGAGG CCAATGGCATCGATNGAAC ATCATTTGATGATCTGCCCAAGGTA ]
[+] EMBL CB662259 [ GCCGACGCATCTCCGATTCGATTTCGCCTTCCCACGAATCTATCTCCCCCCGAGTCCCCAGCGAGATGGCCACGTCGTTCGACCGCTGGGAGAAGGACCCCTTCTTCCCGGCCGCCGAGGAGGTGCAGGAGTCCGCCGACCGGATGGAGTCGGTGTACAGGAGGTGGTTGCAGGAGAGGAAAGAAGTAGGTGGCGGCGCGGTGGAGACGGCGGCGGAACGTGGTGGTGGTGGATGGGGGCGAGCCGCTGGGGATCTCCGCCGCGAGCTGCACACGGCGCTCGGCACCGCCAAGTGGCAGCTTGATGAGTTGCAGCGGGCTATTAAATCAAATTATAGTGTTGTGTTAGCTGGCAAAGATACTAGAGCTCGGCATGATGACTTTGTTTCAGCCATTGGGCATCGTATCCTAGAGGTGGAGAAGTTCTTGAAAGAATCCAATACTACTGAAGGGCGTGGCCCTCTTAGCTGGGTTCGCTTGGATGAGGGTGAACGTGAAGAGTTAGCTCATTTCCTTTCAGCAGGAACTTATCAAAAACGTGATGAGGTGGTTACAATTACATCTGCTGGTGACATTGAGGTTGGTAGCAATGCAAGAAGGGTGAAAAAGGGTGTTTCAATTGATAGTTCGAATGATTCTTCGGGCTCAG CAGAGTCAGGTTTAGTGTCAACTAAGGAGGAGA CAGCTCCAGGTCATAGGAGAACGGCAAGTGCCTATG CTGATATT GGATCATGG ACTATTACAATTCCTGATGAGG GCCATGGCATCGAT GAACAATCATTT ]
[+] EMBL CF323388 [ AAAAACGTGATGAGGTGGTTACAATTACATCTGCTGGTGACATTGAGGTTGGTAGCAATGCAAGAAGGGTGAAAAAGGGTGTTTCAATTGATAGTTCGAATGATTCTTCGGGCTCAG CAGAGTCAGGTTTAGTGTCAACTAAGGAGGAGA CAGCTCCAGGTCATAGGAGAACGGCAAGTGCCTATG CTGATATT GGATCATGG ACTATTACAATTCCTGATGAGG CCAATGGCATCGAT GAACAATCATTTGATGATCTGCCCAAGGTACCTTTGGTTAAGAG CCCTAG CTCTTCTGTATTAATGAATG CCTTCCAATCAAAGAC AAGAATG AAGACAAAGAATGGAGCC AAGAAGTTGG CTGGAGCTGA CCAACA GATGTTGTGG AAACTCTT CCTCTGACAAATTCTCGCTCG GCCAGGGGTTTGATGGGGTTTGTTTCAAAGAAGCAAAAGTTGCTTGAGCACCTCTGATGATGAGGATAACTGCAATAAGAAACTTTATGGTTGCCTTGGTGCA ]
[+] EMBL AU225700 [ gccgctATTCTTCGGGCTCAGACAGAGTCAGGTTTAGTGTC ACTAAGGAGGAGACCAGCTCCAGGTCATAGGAGAACGGCAAGTGCCTATGCCTGATATTGGGATCATGGAACTATTACATTCCCTGATGAGGACCAATGGCATCGAT GAACCATCATTTGATGATCTGCCCAAGGTACCTTTGGTTAAGAGACCCTAGACTCTTCTGTATTAATGAATGCCCTTCCAATCAAAGACAAAGAATGAAAGACAAAGAATGGAGCCAAAGAAGTTGGTCTGGAGCTGACCCAACAGGATGTAGTGGAAAACTCTTCCCTCTGAC AATTCTCGa ]
[-] EMBL CB680766 [ ATGCCAGTGACAGTGAACACTGTTTTGTATGTTCGAAGGGATTCTATCATAACTCGCAAGATTGTCTTGGCTATGAAGAAACAACCTGACATGGGAAGCACAACATTTAGCAACCCAATATAGCAAAATCAGTGAAGGATTGATTGTATGGACCGGCAGATCAT TT CGTGTGCC TTAAGCCCAGAGGAACTGAACAATCA TCTTCATATACCA GTTTTGCTGATGCTGCATCTGCAACATTTTAAACA GTCTGGTGCAGTACTGCAGCCTTGTTAACCTGTGCAATTCAGCAGTACATAGAGCTAGAATGCTGATGCTACAACTGGCAAACAACAGTTTTGTGCACGCAGCTGTGGGGTTTGCCTGGATAATTGAGTGGCATCTCCATGTACTGTATTCCAATTACTGATGTCTCAAGTATAGTGCTAGGTGGCATGAACTTTGCGGAAGAATTTGAGTACCTATATTTTGATGCTATAGATTGGCTTGGAGAAGGCTGAAAATTCATCTATTAACACAAGTATCGCAAGAGCTGCAGGACTACAGGTCTTGCAGCCTGTACAGATGGTTGTGTTTTGTACACTAGAGGTGCAGTTTAGAAGAACAGAAAAATTCTTCTGTTCTTAGACATTGGAGTAACTTTTACCACACGATTGGCTTGTAACCTGTAAATAACTACTGCTTCAAATGAGCACCTGTTCTTACAAATTTGATAATGTTGGGTGTCGGTCTGCACTGCAACATCCAAAAAACCTTTGTAAGTAAGCACATGTCAACAGCTTGAAATTCAACAGACTTCTGATAAAACGCACTGGTTCATGTTGCGTTAAAAAAGA]
[+] EMBL BI805257 [ cagaGGAACTGAACATCATCTTGCATATACCAGTTTAGCCCAGAGGAACTGAACAATCAGTCTTCATATACCACGTTTTGCTGATGCTGCATCTGCAACATTTTAAACACGTCTGGT CAGTACTGCAGCCTTGTTAACCTGTGCAATTCAGCAGTACATAGAGCTAGAATGCTGATGCTAC ACTGGCCAACAACAGTTTTGTGCACGCAGCTGTGGGGTTTGCCTGGATAATTGAGTGGCATCTCCATGTACTGTATTCCAATTACTGATGTCTCAAGTATAGTGCTAGGTGGCATGAACTTTGCGGAAGAATTTGAGTACCTATATTTTGATGCTATAGATTGGCTTGGAGAAGGCTGGAAATTCATCTATTAACACAAGTATCGCAAGAGCTGCAGGACTACAGGTCTTGCAGCCTGTACAGATGGTTGTGTTTTGTACACTAGAGGTGCAGTTTAGAAGAACAGAAAAATTCTTCTGTTCTTAGACATTGGAGTAACTTTTACCACACGATTGGCTTGTAACCTGTAAATAACTACTGCTTCAAATGAGCACCTGTTCTTACAAAaaaaaaa ]
consensusID : consensus_13312#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1698 fasta sequence
[TCCGACTTTCCGTTGCCCTCGTCTCCCCCTTCTCGCTCGCAATGGCGACGTCGTTCGACCGCTGGGAGAAGGACCCCTTCTTCCCCGCCGCCGAGGAGGTGCAGGGATCCGCCGACCGCATGGAGTCGGTGTACAGGATATGGGTGCAGGACAGGAGTGGGGGCGATTCGGAGGCGGCGGCGGCGGCGGCTGCTGCTGCCGTGGGTGGAGGAGGGCTCCCTGCCGGCGAGCTCCGCCGCGAGCTGCACACTGCGCTCGGCACCGCCAAGTGGCAGCTAGATGAATTGGAGCGGGCAATTAGATCAAACGACAAGGTTTTCTCAGCTGGAAAGGACACAAAAGCACGGCATGATGACTTTGTTGCGGCAATCGGTTGTCGCATACTTGAGGTTGAGAACAATTTGAAAGAATCCAATGTTGCAGAGGGAAGGGGTGCCCTAAGCTGGATTGATTTGGATGAGGATGAACGGAATGATCTTGCTACCTTCCTATCTGCAAGCTCTTTTCAACAGCGAGACAAAGTAGTTACAATTCCATCTGTTGGTGATATTGATGTGGGCAACAATGCAGCAATGGTTAAAAAGGATATGTATGCTGACAGCTCCAAGGATTCTGGCTCCGCTGAGTTGAGTTCAGCAAGAGTAAAGGAAGAAACGCATCGTGGGCACAGAAGGGCTGCTAGTGCCCATGCTGATATCGGGTCATGGACTATGTTATGTCCAAATGAGAGCGAGAGTTCTGCTGACCTACCATATGATGACAAGCACCAAGAACCTTTGCTGAAGATAGTGAAAACATGTGCACTGACGAGTGCCTTGCAATCTAAGCCTAGAACGAAGAAAAAAGGTGGAGCTGTGAAATGGGCCGCTGTTGATCAACAAGATGTGGAAGAGACAATCCCTCTCAGTTCTCAGATGGGTCAGGGATCGGATAGATGCTTTGAAAGAAGCAAGAGTTGTGTAAGTACTTGTGATGAGAGTACATACAATAAGAAACTTTATGGTTGTCTTGGAGCCCTGCATAGACGACTGCAGAGGTCGCGATATCGAATTCGGTATGGGCGTCCTGTTCAATTAATTGTGTTAGCAGTTGCTGCCCTCTTAATATTCATGTGTGTATTCAAGAAAATTTGGTGACCTTTTGATGGGCTCATGATTTCCATAGAAGCCTCACCACAGCAGCTTGCGAGGTTCTACCATTTTTGCCTGCATAGCTCATATAACTGGTGTTGAACAGGCATCTGAGGCATGAAGAATGATCAGACTGGAGCAGCTTATCGCATTGACTGTACAGAAGTGTGCTGCATCAGGATGTCATCGGAAATGCAGTGTGCTGCCTGCATGATGCACCTCAAGATCTTGATCCTCACCATGGCCTGTTGACATATGCAACACAGTGTAGGGCCCGCTTTGGAAAGTTGGAAGAGTGGTGGAATTTCCTTTGTGAAATATATCTTCTGAACCCCTCATTCATAGCTGGTTCCATGAGAATAGGTTCTGAAGTGAAATGTGTAAGATGCTAGAACAATTGCCACACAATCAGAAGCTAGCCCGGGCTATCCGGCTCTAGAATTAGAATTTTGATGCCTCTGGCATTACGTTTGTTAGGCTATTAATTAAAGGAGCTATAAGGGGTAGCTAAATGTATTGCGATGTTTGAAACTTCTGCACTGTTCGCGTGTTATATGAAAGACTAATC]
[+] EMBL AK071256 [TCCGACTTTCCGTTGCCCTCGTCTCCCCCTTCTCGCTCGCAATGGCGACGTCGTTCGACCGCTGGGAGAAGGACCCCTTCTTCCCCGCCGCCGAGGAGGTGCAGGGATCCGCCGACCGCATGGAGTCGGTGTACAGGATATGGGTGCAGGACAGGAGTGGGGGCGATTCGGAGGCGGCGGCGGCGGCGGCTGCTGCTGCCGTGGGTGGAGGAGGGCTCCCTGCCGGCGAGCTCCGCCGCGAGCTGCACACTGCGCTCGGCACCGCCAAGTGGCAGCTAGATGAATTGGAGCGGGCAATTAGATCAAACGACAAGGTTTTCTCAGCTGGAAAGGACACAAAAGCACGGCATGATGACTTTGTTGCGGCAATCGGTTGTCGCATACTTGAGGTTGAGAACAATTTGAAAGAATCCAATGTTGCAGAGGGAAGGGGTGCCCTAAGCTGGATTGATTTGGATGAGGATGAACGGAATGATCTTGCTACCTTCCTATCTGCAAGCTCTTTTCAACAGCGAGACAAAGTAGTTACAATTCCATCTGTTGGTGATATTGATGTGGGCAACAATGCAGCAATGGTTAAAAAGGATATGTATGCTGACAGCTCCAAGGATTCTGGCTCCGCTGAGTTGAGTTCAGCAAGAGTAAAGGAAGAAACGCATCGTGGGCACAGAAGGGCTGCTAGTGCCCATGCTGATATCGGGTCATGGACTATGTTATGTCCAAATGAGAGCGAGAGTTCTGCTGACCTACCATATGATGACAAGCACCAAGAACCTTTGCTGAAGATAGTGAAAACATGTGCACTGACGAGTGCCTTGCAATCTAAGCCTAGAACGAAGAAAAAAGGTGGAGCTGTGAAATGGGCCGCTGTTGATCAACAAGATGTGGAAGAGACAATCCCTCTCAGTTCTCAGATGGGTCAGGGATCGGATAGATGCTTTGAAAGAAGCAAGAGTTGTGTAAGTACTTGTGATGAGAGTACATACAATAAGAAACTTTATGGTTGTCTTGGAGCCCTGCATAGACGACTGCAGAGGTCGCGATATCGAATTCGGTATGGGCGTCCTGTTCAATTAATTGTGTTAGCAGTTGCTGCCCTCTTAATATTCATGTGTGTATTCAAGAAAATTTGGTGACCTTTTGATGGGCTCATGATTTCCATAGAAGCCTCACCACAGCAGCTTGCGAGGTTCTACCATTTTTGCCTGCATAGCTCATATAACTGGTGTTGAACAGGCATCTGAGGCATGAAGAATGATCAGACTGGAGCAGCTTATCGCATTGACTGTACAGAAGTGTGCTGCATCAGGATGTCATCGGAAATGCAGTGTGCTGCCTGCATGATGCACCTCAAGATCTTGATCCTCACCATGGCCTGTTGACATATGCAACACAGTGTAGGGCCCGCTTTGGAAAGTTGGAAGAGTGGTGGAATTTCCTTTGTGAAATATATCTTCTGAACCCCTCATTCATAGCTGGTTCCATGAGAATAGGTTCTGAAGTGAAATGTGTAAGATGCTAGAACAATTGCCACACAATCAGAAGCTAGCCCGGGCTATCCGGCTCTAGAATTAGAATTTTGATGCCTCTGGCATTACGTTTGTTAGGCTATTAATTAAAGGAGCTATAAGGGGTAGCTAAATGTATTGCGATGTTTGAAACTTCTGCACTGTTCGCGTGTTATATGAAAGACTAATC]
[+] EMBL CB096516 [ AGGTGGATCTGTGAAATGGGCCGCTGTTGATC ACAAGATGTGGAAGAGACAATCCCTCTCAGTTCTCAGATGGGTCAGGGATCGGATAGATGCTTTGAGAGAAGCAAGAGTTGTGTAAGTACTTGTGATGAGAGTACATACAATAAGAAACTTTATGGTTGTCTTGGAGCCCTGCATAGACGACTGCAGAGGTCGCGATATCGAATTCGGTATGGGCGTCCTGTTCAATTAATTGTGTTAGCAGTTGCTGCCCTCTTAATATTCATGTGTGTATTCAAGAAAATTTGGTGACCTTTTGATGGGCTCATGATTTCCATAGAAGCCTCACCACAGCAGCTTGCGAGGTTCTACCATTTTTGCCTGCATAGCTCATATAACTGGTGTTGAACAGGCACCTGAGGCATGAAGAATGATCAGACTGGAGCAGCTTATCGCATTGACTGTACAGAAGTGTGCTGCATCAGGATGTCATCGGAAATGCAGTGTGCTGCCTGCATGATGCACCTCAAGATCTTGATCCTCACCATGGCCTGTTGACATATGCAACACCGTGTAGGGCCCGCTTT ]
consensusID : consensus_13312#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 540 fasta sequence
[GTTTCTCTAGCTAGTTGAATGCCAGTGACAGTGAACACTGTTTTGTATGTTCGAAGGGATTCTATCATAACTCGCAAGATTGTCTTGGCTATGAAGAAACAACCTGACATGGGAAGCACAACATTTAGCAACCCAATATAGCAAAATCAGTGAAGGATTGATTGTATGGACCGGCAGATCATTTCGTGTGCCTTAAGCCCAGAGGAACTGAACAATCATCTTCATATACCAGTTTTGCTGATGCTGCATCTGCAACATTTTAAACAGTCTGGTGCAGTACTGCAGCCTTGTTAACCTGTGCAATTCAGCAGTACATAGAGCTAGAATGCTGATGCTACAACTGGCAAACAACAGTTTTGTGCACGCAGCTGTGGGGTTTGCCTGGATAATTGAGTGGCATCTCCATGTACTGTATTCCAATTACTGATGTCTCAAGTATAGTGCTAGGTGGCATGAACTTTGCGGAAGAATTTGAGTACCTATATTTTGATGCTATAGATTGGCTTGGAGAAGGCTGAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU096644 [GTTTCTCTAGCTAGTTGAATGCCAGTGACAGTGAACACTGTTTTGTATGTTCGAAGGGATTCTATCATAACTCGCAAGATTGTCTTGGCTATGAAGAAACAACCTGACATGGGAAGCACAACATTTAGCAACCCAATATAGCAAAATCAGTGAAGGATTGATTGTATGGACCGGCAGATCATTTCGTGTGCCTTAAGCCCAGAGGAACTGAACAATCATCTTCATATACCAGTTTTGCTGATGCTGCATCTGCAACATTTTAAACAGTCTGGTGCAGTACTGCAGCCTTGTTAACCTGTGCAATTCAGCAGTACATAGAGCTAGAATGCTGATGCTACAACTGGCAAACAACAGTTTTGTGCACGCAGCTGTGGGGTTTGCCTGGATAATTGAGTGGCATCTCCATGTACTGTATTCCAATTACTGATGTCTCAAGTATAGTGCTAGGTGGCATGAACTTTGCGGAAGAATTTGAGTACCTATATTTTGATGCTATAGATTGGCTTGGAGAAGGCTGAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_13312#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 286 fasta sequence
[GTGTCTAGGTGGCAATGAACTTGTGCGGAAGAATTTGAGTACCTATATGTGTTGATGCTATAGATTGGCTTGGAGAAGGCTGAAAATTCATCTATTAACACCAGTATCGCACAGAGCTGCAGGACTACAGGTCTTGCAGCCTGTACAGATGGTTGTGTTTTGTACACCTAGAGGTGCAGTTTAGAAGAACAGAAAAATTCTTCTGTTCTTAGACCTTGGAGTAACTTTTACCACCCGATTGGCTTGTAACCTGTAAATAAGGGCCTGTTTGGTACCAAAAAAAAAA]
[+] EMBL BI813478 [GTGTCTAGGTGGCAATGAACTTGTGCGGAAGAATTTGAGTACCTATATGTGTTGATGCTATAGATTGGCTTGGAGAAGGCTGAAAATTCATCTATTAACACCAGTATCGCACAGAGCTGCAGGACTACAGGTCTTGCAGCCTGTACAGATGGTTGTGTTTTGTACACCTAGAGGTGCAGTTTAGAAGAACAGAAAAATTCTTCTGTTCTTAGACCTTGGAGTAACTTTTACCACCCGATTGGCTTGTAACCTGTAAATAAGGGCCTGTTTGGTACCAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13312#0 AAAAAGGCGAATAATTCCGCTGTTGCTTCGCTGCCTTTTGCCTTCTTCCTCATCCTCTCC 60
consensus_13312#2 ------------------------------------------------------------
consensus_13312#3 ------------------------------------------------------------
consensus_13312#1 ------------------------------------------------------------
consensus_13312#0 ANCACCACCGCCACCGGCCGACGCATCTCCGATTCGATTTCGCCTTCCCACGAATCTATC 120
consensus_13312#2 ------------------------------------------------------------
consensus_13312#3 ------------------------------------------------------------
consensus_13312#1 ------------------------------------------------------------
consensus_13312#0 TCCCCCCGAGTCCCCAGCGAGATGGCCACGTCGTTCGACCGCTGGGAGAAGGACCCCTTC 180
consensus_13312#2 ------------------------------------------------------------
consensus_13312#3 ------------------------------------------------------------
consensus_13312#1 ------------------------------------------------------------
consensus_13312#0 TTCCCGGCCGCCGAGGAGGTGCAGGAGTCCGCCGACCGGATGGAGTCGGTGTACAGGAGG 240
consensus_13312#2 ------------------------------------------------------------
consensus_13312#3 ------------------------------------------------------------
consensus_13312#1 ------------------------------------------------------------
consensus_13312#0 TGGTTGCAGGAGAGGAAAGAAGTAGGTGGCGGCGCGGTGGAGACGGCGGCGGAACGTGGT 300
consensus_13312#2 ------------------------------------------------------------
consensus_13312#3 ------------------------------------------------------------
consensus_13312#1 ------------------------------------------------------------
consensus_13312#0 GGTGGTGGATGGGGGCGAGCCGCTGGGGATCTCCGCCGCGAGCTGCACACGGCGCTCGGC 360
consensus_13312#2 ------------------------------------------------------------
consensus_13312#3 ------------------------------------------------------------
consensus_13312#1 ------------------------------------------------------------
consensus_13312#0 ACCGCCAAGTGGCAGCTTGATGAGTTGCAGCGGGCTATTAAATCAAATTATAGTGTTGTG 420
consensus_13312#2 ------------------------------------------------------------
consensus_13312#3 ------------------------------------------------------------
consensus_13312#1 --------------------------TCCGACTTTCCGTTGCCCTCGTCTCCCCCTTCTC 34
consensus_13312#0 TTAGCTGGCAAAGATACTAGAGCTCGGCATGATGACTTTGTTTCAGCCATTGGGCATCGT 480
consensus_13312#2 ------------------------------------------------------------
consensus_13312#3 ------------------------------------------------------------
consensus_13312#1 GCTCGCAATGGCGACGTCGTTCGACCGCTGGGAGAAGGACCCCTTCTTCCCCGCCGCCGA 94
consensus_13312#0 ATCCTAGAGGTGGAGAAGTTCTTGAAAGAATCCAATACTACTGAAGGGCGTGGCCCTCTT 540
consensus_13312#2 ------------------------------------------------------------
consensus_13312#3 ------------------------------------------------------------
consensus_13312#1 GGAGGTGCAGGGATCCGCCGACCGCATGGAGTCGGTGTACAGGATATGGGTGCAGGACAG 154
consensus_13312#0 AGCTGGGTTCGCTTGGATGAGGGTGAACGTGAAGAGTTAGCTCATTTCCTTTCAGCAGGA 600
consensus_13312#2 ------------------------------------------------------------
consensus_13312#3 ------------------------------------------------------------
consensus_13312#1 GAGTGGGGGCGATTCGGAGGCGGCGGCGGCGGCGGCTGCTGCTGCCGTGGGTGGAGGAGG 214
consensus_13312#0 ACTTATCAAAAACGTGATGAGGTGGTTACAATTACATCTGCTGGTGACATTGAGGTTGGT 660
consensus_13312#2 ------------------------------------------------------------
consensus_13312#3 ------------------------------------------------------------
consensus_13312#1 GCTCCCTGCCGGCGAGCTCCGCCGCGAGCTGCACACTGCGCTCGGCACCGCCAAGTGGCA 274
consensus_13312#0 AGCAATGCAAGAAGGGTGAAAAAGGGTGTTTCAATTGATAGTTCGAATGATTCTTCGGGC 720
consensus_13312#2 ------------------------------------------------------------
consensus_13312#3 ------------------------------------------------------------
consensus_13312#1 GCTAGATGAATTGGAGCGGGCAATTAGATCAAACGACAAGGTTTTCTCAGCTGGAAAGGA 334
consensus_13312#0 TCAGCAGAGTCAGGTTTAGTGTCAACTAAGGAGGAGACAGCTCCAGGTCATAGGAGAACG 780
consensus_13312#2 ------------------------------------------------------------
consensus_13312#3 ------------------------------------------------------------
consensus_13312#1 CACAAAAGCACGGCATGATGACTTTGTTGCGGCAATCGGTTGTCGCATACTTGAGGTTGA 394
consensus_13312#0 GCAAGTGCCTATGCTGATATTGGATCATGGACTATTACAATTCCTGATGAGGCCAATGGC 840
consensus_13312#2 ------------------------------------------------------------
consensus_13312#3 ------------------------------------------------------------
consensus_13312#1 GAACAATTTGAAAGAATCCAATGTTGCAGAGGGAAGGGGTGCCCTAAGCTGGATTGATTT 454
consensus_13312#0 ATCGATGAACAATCATTTGATGATCTGCCCAAGGTACCTTTGGTTAAGAGCCCTAGCTCT 900
consensus_13312#2 ------------------------------------------------------------
consensus_13312#3 ------------------------------------------------------------
consensus_13312#1 GGATGAGGATGAACGGAATGATCTTGCTACCTTCCTATCTGCAAGCTCTTTTCAACAGCG 514
consensus_13312#0 TCTGTATTAATGAATGCCTTCCAATCAAAGACAAGAATGAAGACAAAGAATGGAGCCAAG 960
consensus_13312#2 ------------------------------------------------------------
consensus_13312#3 ------------------------------------------------------------
consensus_13312#1 AGACAAAGTAGTTACAATTCCATCTGTTGGTGATATTGATGTGGGCAACAATGCAGCAAT 574
consensus_13312#0 AAGTTGGCTGGAGCTGACCAACAGGATGTTGTGGAAACTCTTCCTCTGACAAATTCTCGC 1020
consensus_13312#2 ------------------------------------------------------------
consensus_13312#3 ------------------------------------------------------------
consensus_13312#1 GGTTAAAAAGGATATGTATGCTGACAGCTCCAAGGATTCTGGCTCCGCTGAGTTGAGTTC 634
consensus_13312#0 TCGTGCCAGGGGTTTGATGGGTTGTTTCAAAGAAGCAAAAGTTGCTTGAGCACCTCTGAT 1080
consensus_13312#2 ------------------------------------------------------------
consensus_13312#3 ------------------------------------------------------------
consensus_13312#1 AGCAAGAGTAAAGGAAGAAACGCATCGTGGGCACAGAAGGGCTGCTAGTGCCCATGCTGA 694
consensus_13312#0 GATGAGGATAACTGCAATAAGAAACTTTATGGTTGCCTTGGTGCATTCCGTCGGCTACTT 1140
consensus_13312#2 ------------------------------------------------------------
consensus_13312#3 ------------------------------------------------------------
consensus_13312#1 TATCGGGTCATGGACTATGTTATGTCCAAATGAGAGCGAGAGTTCTGCTGACCTACCATA 754
consensus_13312#0 CAGAGGTCTCAGTATCAAGTTCAATATGGACGTCCTATTCAGTTACTTATCCTAGCAATT 1200
consensus_13312#2 ------------------------------------------------------------
consensus_13312#3 ------------------------------------------------------------
consensus_13312#1 TGATGACAAGCACCAAGAACCTTTGCTGAAGATAGTGAAAACATGTGCACTGACGAGTGC 814
consensus_13312#0 GTTGTTTTACTAGTCTTAATTTATGCCATGAAGGCAATTTTGTGACTTTTTTGATCAACT 1260
consensus_13312#2 ------------------------------------------------------------
consensus_13312#3 ------------------------------------------------------------
consensus_13312#1 CTTGCAATCTAAGCCTAGAACGAAGAAAAAAGGTGGAGCTGTGAAATGGGCCGCTGTTGA 874
consensus_13312#0 AGTGTCTCACGATTGACTTGCACTTCTTCATCAGCAGTCTGTAAGGTGTATGACAATTCA 1320
consensus_13312#2 ------------------------------------------------------------
consensus_13312#3 ------------------------------------------------------------
consensus_13312#1 TCAACAAGATGTGGAAGAGACAATCCCTCTCAGTTCTCAGATGGGTCAGGGATCGGATAG 934
consensus_13312#0 TAGCTGATGAAACTAAAAGGGGAAGTGGTATTGTTTCTCTAGCTAGTTGAATGCCAGTGA 1380
consensus_13312#2 --------------------------------GTTTCTCTAGCTAGTTGAATGCCAGTGA 28
consensus_13312#3 ------------------------------------------------------------
consensus_13312#1 ATGCTTTGAAAGAAGCAAGAGTTGTGTAAGTACTTGTGATGAGAGTACATACAATAAGAA 994
consensus_13312#0 CAGTGAACACTGTTTTGTATGTTCGAAGGGATTCTATCATAACTCGCAAGATTGTCTTGG 1440
consensus_13312#2 CAGTGAACACTGTTTTGTATGTTCGAAGGGATTCTATCATAACTCGCAAGATTGTCTTGG 88
consensus_13312#3 ------------------------------------------------------------
consensus_13312#1 ACTTTATGGTTGTCTTGGAGCCCTGCATAGACGACTGCAGAGGTCGCGATATCGAATTCG 1054
consensus_13312#0 CTATGAAGAAACAACCTGAC--ATGGGAAGCACAACATTTAGCAACCCAATATAGCAAAA 1498
consensus_13312#2 CTATGAAGAAACAACCTGAC--ATGGGAAGCACAACATTTAGCAACCCAATATAGCAAAA 146
consensus_13312#3 -----------------------------------------GTGTCTAGGTGGCAATGAA 19
consensus_13312#1 GTATGGGCGTCCTGTTCAATTAATTGTGTTAGCAGTTGCTGCCCTCTTAATATTCATGTG 1114
* *
consensus_13312#0 TCAGTGAAGGATTGATTGTATGGACCGGCAGATCA--TTTCGTGTGCCTTAAGC------ 1550
consensus_13312#2 TCAGTGAAGGATTGATTGTATGGACCGGCAGATCA--TTTCGTGTGCCTTAAGC------ 198
consensus_13312#3 CTTGTGCGGAA--GAATTTGAGTACCTATATGTGT--TGATGCTATAGATTGGC------ 69
consensus_13312#1 TGTATTCAAGA--AAATTTGGTGACCTTTTGATGGGCTCATGATTTCCATAGAAGCCTCA 1172
* * * * * *** * * * *
consensus_13312#0 CCAGAGGAA-CTG-AACAATCATCTTCATATACCAGTTTTGC---------TGATGCTGC 1599
consensus_13312#2 CCAGAGGAA-CTG-AACAATCATCTTCATATACCAGTTTTGC---------TGATGCTGC 247
consensus_13312#3 TTGGAGAAGGCTG-AAAATTCATCTATTAACACCAGTATCGCA--------CAGAGCTGC 120
consensus_13312#1 CCACAGCAGCTTGCGAGGTTCTACCATTTTTGCCTGCATAGCTCATATAACTGGTGTTGA 1232
** * ** * ** * ** * * ** * **
consensus_13312#0 ATCTGCAAC----------ATTTTAAACAGTCTGGTGCAGTACTGCAGCCTTGTTAACCT 1649
consensus_13312#2 ATCTGCAAC----------ATTTTAAACAGTCTGGTGCAGTACTGCAGCCTTGTTAACCT 297
consensus_13312#3 AGG-ACTAC----------AGGTCTTGCAGCCTGTACAGATGGTTGTGTTTTGTACACCT 169
consensus_13312#1 ACAGGCATCTGAGGCATGAAGAATGATCAGACTGGAGCAGC-TTATCGCATTGACTGTAC 1291
* * * * *** *** * * ***
consensus_13312#0 ----GTGCAATTCAGCAGTACAT----AGAGCTAGAATGCTGATGCTACAACTGGCAAAC 1701
consensus_13312#2 ----GTGCAATTCAGCAGTACAT----AGAGCTAGAATGCTGATGCTACAACTGGCAAAC 349
consensus_13312#3 AGAGGTGCAGTTTAGAAGAACAG----AAAAATT--CTTCTGTTCTTAGACCTTG-GAGT 222
consensus_13312#1 AGAAGTGTGCTGCATCAGGATGTCATCGGAAATGCAGTGTGCTGCCTGCATGATGCACCT 1351
*** * * ** * * * * * * *
consensus_13312#0 AACAGTTTTGTGCACGCAGCTGTGGGGTTTGCCTGGATAATTGAGTGGCATCTCCATGTA 1761
consensus_13312#2 AACAGTTTTGTGCACGCAGCTGTGGGGTTTGCCTGGATAATTGAGTGGCATCTCCATGTA 409
consensus_13312#3 AAC--TTTTAC-CACCCGATTG-GCTTGTAACCTG--TAAATAAG-GGCCTGTTTG-GTA 274
consensus_13312#1 CAAGATCTTGATCCTCACCATGGCCTGTTGACATATGCAACACAGTGTAGGGCCCGCTTT 1411
* * ** * ** * * * ** ** * *
consensus_13312#0 CTGTATTCCAATTACTGATGTCTCAAGTATAGTGCTAGGTGGCAT--GAACTTTGCGGAA 1819
consensus_13312#2 CTGTATTCCAATTACTGATGTCTCAAGTATAGTGCTAGGTGGCAT--GAACTTTGCGGAA 467
consensus_13312#3 CCAAAAAAAAAA------------------------------------------------ 286
consensus_13312#1 GGAAAGTTGGAAGAGTGGTGGAATTTCCTTTGTGAAATATATCTTCTGAACCCCTCATTC 1471
* *
consensus_13312#0 GAATTTGAGTACCTATATTTTGATGCTATAGATTGGCTTGGAGAAGGCTGAAAATTCATC 1879
consensus_13312#2 GAATTTGAGTACCTATATTTTGATGCTATAGATTGGCTTGGAGAAGGCTGAAAAAAAAAA 527
consensus_13312#3 ------------------------------------------------------------
consensus_13312#1 ATAGCTGGTTCCATGAGAATAGGTTCTGAAGTGAAATGTGTAAGATGCTAGAACAATTGC 1531
consensus_13312#0 TATTAACACAAGTATCGCAAGAGCTGCAGGACTACAGGTCTTGCAGCCTGTACAGATGGT 1939
consensus_13312#2 AAAAAAAAAAAAA----------------------------------------------- 540
consensus_13312#3 ------------------------------------------------------------
consensus_13312#1 CACACAATCAGAAGCTAGCCCGGGCTATCCGGCTCTAGAATTAGAATTTTGATGCCTCTG 1591
consensus_13312#0 TGTGTTTTGTACACTAGAGGTGCAGTTTAGAAGAACAGAAAAATTCTTCTGTTCTTAGAC 1999
consensus_13312#2 ------------------------------------------------------------
consensus_13312#3 ------------------------------------------------------------
consensus_13312#1 GCATTACGTTTGTTAGGCTATTAATTAAAGGAGCTATAAGGGGTAGCTAAATGTATTGCG 1651
consensus_13312#0 ATTGGAGTAACTTTTACCACACGATTGGCTTGTAACCTGTAAATAACTACTGCTTCAAAT 2059
consensus_13312#2 ------------------------------------------------------------
consensus_13312#3 ------------------------------------------------------------
consensus_13312#1 ATGTTTGAAACTTCTGCACTGTTCGCGTGTTATATGAAAGACTAATC------------- 1698
consensus_13312#0 GAGCACCTGTTCTTACAAATTTGATAATGTTGGGTGTCGGTCTGCACTGCAACATCCAAA 2119
consensus_13312#2 ------------------------------------------------------------
consensus_13312#3 ------------------------------------------------------------
consensus_13312#1 ------------------------------------------------------------
consensus_13312#0 AAACCTTTGTAAGTAAGCACATGTCAACAGCTTGAAATTCAACAGACTTCTGATAAAACG 2179
consensus_13312#2 ------------------------------------------------------------
consensus_13312#3 ------------------------------------------------------------
consensus_13312#1 ------------------------------------------------------------
consensus_13312#0 CACTGGTTCATGTTGCGTTAAAAAAGA 2206
consensus_13312#2 ---------------------------
consensus_13312#3 ---------------------------
consensus_13312#1 ---------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||