These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13314#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1650 fasta sequence [CGTCGTCTGGTAGCTTCTTCTCGCGGCTGCGCGATGGAGAGCTGGGTCCGCGCGGTGGTGGAGGCTATCCACTCATCTCGCGCCCAGGCCGTCATCTACCTCGCCGGCGGCGCCTCGCAGGCGCTCGGGTGGCTGCTGTCCGTGCCCGGCGCGTCCGGCACCGTCCTCGAGGTCGTCGTGCCCTACTCCATGGCCTCCATGGCGCAGCTGCTCGGCAAGATGCCCTTGCAGTTCACCAGCAAGCAGGCCGCAGAGGACATGGCATTGGCCGCGTTCAACCGCGCCCTCAAGCTTTCTGGACCAGGTCTACAAGTAATGGGTGTTGGCTTCACTGGGTCACTGGCTAGCTCACGTCCAAAACATGGTGAGCATAGGTTCTATGTGTCAACACGAACACAAAATTGCCTCAGGACATCACATGTTACATTGTCAAAGGGTTTACGGAGCAGAGAGGAAGAAGATAAAGTTTCAAGCTACTTTCTGCTCAAGGCAATTGCAGACGGCTGCAAAGTTCCTGCAACCATTCAGTCAGATGTTCAAGAACCTGAACTTCCAAAAGAAAGCGTGGAACAATTTGATGAAGACCAAGAACTCCAGCAAGTTATTGATGGGCAAGTCTGCATGAAAGTGTATCACTTTTCTGATTCAATGGATAAAAACTTCAACAGGAAAATAATTCTACCTGGTTCATTCAATCCCCTGCATGATGGACACCTTAGGCTGTTAGAAGTTGCATCAAGCATGTGTGATGATGGTCTTCCATGCTTTGAGATATCAGCAATCAATGCCGACAAACCTCCACTATCTATCGCAGAAATCAAGCGCCGGGTTGAGCAATTTAGAAAA----GGAAGAATGTGATAATATCTAACCAACCATACTTTTACAAGAAAGCGGAGCTATTTCCAGGCAGTGCATTTGTAATCGGTGCAGACACTGCAGCTAGGCTTGTTAATCCTAAGTATTATGGAGGTGATTACAATAGAATGCTAGAGATACTTCTCGAATGTAAAAACACAGGTACAACATTTCTTGTTGGTGGTCGAAATATTGAAGGAGTTTTCAAGGTCCTTGAAGATTTGGACATTCCAGTCGAGTTAAGGGAAATGTTTATCTCTATACCAGAGGAGAAGTTTCGCATGGATATTTCATCTACAGATATAAGAAAAAAACAAGGGCCTTGATGTATCAAACATGCTGTTCTTCTTATATACTCCCCCCGTCACCCCGTCCTAAAATATAGCAACATGTCTAATCGATTACTAAGTTGCTATATTTTGGAACAGGGGGAATAGTAGATTCAAAATAAAAAAATTGGTGGTTCAAATTATTGGATGAACTTCGTGAACCGTCATGGCAGTGTGTCATGCCATAGGTTTTGGCCCTACGAATAACAACTTCTTTTCTGTATCTTAGTAAAACAACAGTGGTTGGAGATGTAAAAAACCTACTTCCCTGTTTATCTTTCTCTTTTCTTGGATGATTAGGCAATTATGCCCAGTTGTCCTTTATACTATTCTTTTTTTGTTTGGATGCTTTTCACATGTACCTGTACAGGCTCCACAATGTCACATTATCAGTTGAAAAAAGGACACCGCTGAATTCTTGATAGTGACATACTCAAAAAAAAAAAAGAAAAAAAAAAATAAAAGA] [+] EMBL AK107426 [CGTCGTCTGGTAGCTTCTTCTCGCGGCTGCGCGATGGAGAGCTGGGTCCGCGCGGTGGTGGAGGCTATCCACTCATCTCGCGCCCAGGCCGTCATCTACCTCGCCGGCGGCGCCTCGCAGGCGCTCGGGTGGCTGCTGTCCGTGCCCGGCGCGTCCGGCACCGTCCTCGAGGTCGTCGTGCCCTACTCCATGGCCTCCATGGCGCAGCTGCTCGGCAAGATGCCCTTGCAGTTCACCAGCAAGCAGGCCGCAGAGGACATGGCATTGGCCGCGTTCAACCGCGCCCTCAAGCTTTCTGGACCAGGTCTACAAGTAATGGGTGTTGGCTTCACTGGGTCACTGGCTAGCTCACGTCCAAAACATGGTGAGCATAGGTTCTATGTGTCAACACGAACACAAAATTGCCTCAGGACATCACATGTTACATTGTCAAAGGGTTTACGGAGCAGAGAGGAAGAAGATAAAGTTTCAAGCTACTTTCTGCTCAAGGCAATTGCAGACGGCTGCAAAGTTCCTGCAACCATTCAGTCAGATGTTCAAGAACCTGAACTTCCAAAAGAAAGCGTGGAACAATTTGATGAAGACCAAGAACTCCAGCAAGTTATTGATGGGCAAGTCTGCATGAAAGTGTATCACTTTTCTGATTCAATGGATAAAAACTTCAACAGGAAAATAATTCTACCTGGTTCATTCAATCCCCTGCATGATGGACACCTTAGGCTGTTAGAAGTTGCATCAAGCATGTGTGATGATGGTCTTCCATGCTTTGAGATATCAGCAATCAATGCCGACAAACCTCCACTATCTATCGCAGAAATCAAGCGCCGGGTTGAGCAATTTAGAAAA GGAAGAATGTGATAATATCTAACCAACCATACTTTTACAAGAAAGCGGAGCTATTTCCAGGCAGTGCATTTGTAATCGGTGCAGACACTGCAGCTAGGCTTGTTAATCCTAAGTATTATGGAGGTGATTACAATAGAATGCTAGAGATACTTCTCGAATGTAAAAACACAGGTACAACATTTCTTGTTGGTGGTCGAAATATTGAAGGAGTTTTCAAGGTCCTTGAAGATTTGGACATTCCAGTCGAGTTAAGGGAAATGTTTATCTCTATACCAGAGGAGAAGTTTCGCATGGATATTTCATCTACAGATATAAGAAAAAAACAAGGGCCTTGATGTATCAAACATGCTGTTCTTCTTATATACTCCCCCCGTCACCCCGTCCTAAAATATAGCAACATGTCTAATCGATTACTAAGTTGCTATATTTTGGAACAGGGGGAATAGTAGATTCAAAATAAAAAAATTGGTGGTTCAAATTATTGGATGAACTTCGTGAACCGTCATGGCAGTGTGTCATGCCATAGGTTTTGGCCCTACGAATAACAACTTCTTTTCTGTATCTTAGTAAAACAACAGTGGTTGGAGATGTAAAAAACCTACTTCCCTGTTTATCTTTCTCTTTTCTTGGATGATTAGGCAATTATGCCCAGTTGTCCTTTATACTATTCTTTTTTTGTTTGGATGCTTTTCACATGTACCTGTACAGGCTCCACAATGTCACATTATCAGTTGAAAAAAGGACACCGCTGAATTCTTGATAGTGACATACTCAc ] [+] EMBL CB655834 [ GCGATGGCGAGCTGGGTCCGCGCGGTGGTGGAGGCTATCCACTCATCTCGCGCCCAGGCCGTCATCTACCTCGCCGGCGGCGCCTCGCAGGCGCTCGGGTGGCTGCTGTCCGTGCCCGGCGCGTCCGGCACCGTCCTCGAGGTCGTCGTGCCCTACTCCATGGCCTCCATGGCGCAGCTGCTCGGCAAGATGCCCTTGCAGTTCACCAGCAAGCAGGCCGCAGAGGACATGGCATTGGCCGCGTTCAACCGCGCCCTCAAGCTTTCTGGACCAGGTCTACAAGTAATGGGTGTTGGCTTCACTGGGTCACTGGCTAGCTCACGTCCAAAACATGGTGAGCATAGGTTCTATGTGTCAACACGAACACAAAATTGCCTCAGGACATCACATGTTACATTGTCAAAGGGTTTACGGAGCAGAGAGGAAGAAGATAAAGTTTCAAGCTACTTTCTGCTCAAGGCAATTGCAGACGGCTGCAAAGTTCCTGCAACCATTCAGTCAGATGTTCAAGAACCTGAACTTCCAAAAGAAAGCGTGGAACAATTTGATGAAGACCAAGAACTCCAGCAAGTTATTGATGGGCAAGTCTGCATGAAAGTGTATCACTTTTCTGATTCAATGGATAAAAACTTCAACAGGAAAATAATTCTACCTGGTTCATTCAATCCCCTGCATGATGGACACCTTAGGCTGTTAGAAGTTGCATCAAGCATGTGTGATGATGGTCTTCCATGCTTTGAGATATCAGCAATCAATGCCGACAANCCTCCAC ] [+] EMBL CF310841 [ ATCTCGCGCCCAGGCCGTCATCTACCTCGCCGGCGGCGCCTCGCAGGCGCTCGGGTGGCTGCTGTCCGTGCCCGGCGCGTCCGGCACCGTCCTCGAGGTCGTCGTGCCCTACTCCATGGCCTCCATGGCGCAGCTGTTCGGCAAGATGCCCTTGCAGTTCACCAGCAAGCAGGCCGCAGAGGACATGGCATTGGCCGCGTTCAACCGCGCCCTCAAGCTTTCTGGACCAGGTCTACAAGTAATGGGTGTTGGCTTCACTGGGTCACTGGCTAGCTCACGTCCAAAACATGGTGAGCATAGGTTCTATGTGTCAACACGAACACAAAATTGCCTCAGGACATCACATGTTACATTGTCAAAGGGTTTACGGAGCAGAGAGGAAGAAGATAAAGTTTCAAGCTACTTTCTGCTCAAGGCAATTGCAGACGGCTGCAAAGTTCCTGCAACCATTCAGTCAGATGTTCAAGAACCTGAACTTCCAAAAGAAAGCGTGGAACAATTTGATGAAGACCAAGAACTCCAGCAAGTTATTGATGGGCAAGTCTGCATGAAAGTGTATCACTTTTCTGATTCAATGGATAAAAACTTCAACAGGAACATAATTCTACCTGGTTCATTCAATCCCCTGCATGA ] [+] EMBL CB661122 [ GCGCCCAGGCCGTCATCTACCTCGCCGGCGGCGCCTCGCAGGCGCTCGGGTGGCTGCTGTCCGTGCCCGGCGCGTCCGGCACCGTCCTCGAGGTCGTCGTGCCCTACTCCATGGCCTCCATGGCGCAGCTGCTCGGCAAGATGCCCTTGCAGTTCACCAGCAAGCAGGCCGCAGAGGACATGGCATTGGCCGCGTTCAACCGCGCCCTCAAGCTTTCTGGACCAGGTCTACAAGTAATGGGTGTTGGCTTCACTGGGTCACTGGCTAGCTCACGTCCAAAACATGGTGAGCATAGGTTCTATGTGTCAACACGAACACAAAATTGCCTCAGGACATCACATGTTACATTGTCAAAGGGTTTACGGAGCAGAGAGGAAGAAGATAAAGTTTCAAGCTACTTTCTGCTCAAGGCAATTGCAGACGGCTGCAAAGTTCCTGCAACCATTCAGTCAGATGTTCAAGAACCTGAACTTCCAAAAGAAAGCGTGGAACAATTTGATGAAGACCAAGAACTCCAGCAAGTTATTGATGGGCAAGTCTGCATGAAAGTGTATCACTTTTCTGATTCAATGGATAAAAACTTCAACAGGAAAATAATTCTACCTGGTTCATTCAATCCCCTGCATGATGGACACCTTAGGCTGTTAGAAGTTGCATCAAGCATGTGTGATGATGGTCTTCCATGCTTTGAGATATCAGCAATCAATGCCGACAAACCTCCACTATCTATCGCAGAAATCAAGCGCCGGGTTGAGCAATTTAGAAAAGTAGGGAAGAATGTGATAATATCTAACCAACCATACTTTTACAAGAAAGCGGAGCTATTTCCAGGCAGTG ] [-] EMBL CB655835 [ CTTGTTAATCCTAAGTATTATGGAGGTGATTACAATAGAATGCTAGAGATACTTCTCGAATGTAAAAACACAGGTACAACATTTCTTGTTGGTGGTCGAAATATTGAAGGAGTTTTCAAGGTCCTTGAAGATTTGGACATTCCAGTCGAGTTAAGGGAAATGTTTATTTTTATACCAGAGGAGAAGTTTCGCATGGATATTTCTTTTCCAGATATAAGAAAAAAACAAGGGCCTTGATGTATCAAACATGCTGTTTTTTTTATATACTCCCCCCGTCACCCCGTCCTAAAATATAGCAACATGTTTAATCGATTACTAAGTTGCTATATTTTGGAACAGGGGGAATAGTAGATTCAAAATAAAAAAATTGGTGGTTCAAATTATTGGATGAACTTCGTGAACCGTCATGGCAGGGTGTCATGCCATAGGTTTTGGCCCTACGAATAACAACTTCTTTTTTGTATTTTAGTAAAACAACAGTGGTTGGAGATGTAAAAAACCTACTTCCCTGTTTATCTTTCTCTTTTCTTGGAGGATTAGGCAATTATGCCCAGTTGTCCTTTATACTATTCTTTTTTTGTTTGGATGCTTTTCACATGTACCTGTACAGGCTCCCCAATGTCCCATTATCAGTTGAAAAAAGGACCCCGCTGAATTTTTGATGGTGCCAAAAAAAAAAAAAAAAAAGAAAAAAAAAAATAAAAGA] [+] EMBL AU162179 [ TGGAGATGTAAAAAACCTACTTCCCTGTTTATCTTTCTCTTTTCTTGGATGATTAGGCAATTATGCCCAGTTGTCCTTTATACTATTCTTTTTTTGTTTGGATGCTTTTCACATGTACCTGTACAGGCTCCACAATGTCACATTATCAGTTGAAAAAAGGACACCGCTGAATTCTTGATAGTGACATACTCAAAAAAAAAAAAAAAAA ] consensusID : consensus_13314#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1540 fasta sequence [GCTTCTTCTCGCGGCTGCGCGATGGAGAGCTGGGTCCGCGCGGTGGTGGAGGCTATCCACTCATCTCGCGCCCAGGCCGTCATCTACCTCGCCGGCGGCGCCTCGCAGGCGCTCGGGTGGCTGCTGTCCGTGCCCGGCGCGTCCGGCACCGTCCTCGAGGTCGTCGTGCCCTACTCCATGGCCTCCATGGCGCAGCTGCTCGGCAAGATGCCCTTGCAGTTCACCAGCAAGCAGGCCGCAGAGGACATGGCATTGGCCGCGTTCAACCGCGCCCTCAAGCTTTCTGGACCAGGTCTACAAGTAATGGGTGTTGGCTTCACTGGGTCACTGGCTAGCTCACGTCCAAAACATGGGTTTACGGAGCAGAGAGGAAGAAGATAAAGTTTCAAGCTACTTTCTGCTCAAGGCAATTGCAGACGGCTGCAAAGTTCCTGCAACCATTCAGTCAGATGTTCAAGAACCTGAACTTCCAAAAGAAAGCGTGGAACAATTTGATGAAGACCAAGAACTCCAGCAAGTTATTGATGGGCAAGTCTGCATGAAAGTGTATCACTTTTCTGATTCAATGGATAAAAACTTCAACAGGAAAATAATTCTACCTGGTTCATTCAATCCCCTGCATGATGGACACCTTAGGCTATTAGAAGTTGCATCAAGCATGTGTGATGATGGTCTTCCATGCTTTGAGATATCAGCAATCAATGCCGACAAACCTCCACTATCTATCGCAGAAATCAAGCGCCGGGTTGAGCAATTTAGAAAAGTAGGGAAGAATGTGATAATATCTAACCAACCATACTTTTACAAGAAAGCGGAGCTATTTCCAGGCAGTGCATTTGTAATCGGTGCAGACACTGCAGCTAGGCTTGTTAATCCTAAGTATTATGGAGGTGATTACAATAGAATGCTAGAGATACTTCTCGAATGTAAAAACACAGGTACAACATTTCTTGTTGGTGGTCGAAATATTGAAGGAGTTTTCAAGGTCCTTGAAGATTTGGACATTCCAGTCGAGTTAAGGGAAATGTTTATCTCTATACCAGAGGAGAAGTTTCGCATGGATATTTCATCTACAGATATAAGAAAAAAACAAGGGCCTTGATGTATCAAACATGCTGTTCTTCTTATATACTCCCCCCGTCACCCCGTCCTAAAATATAGCAACATGTCTAATCGATTACTAAGTTGCTATATTTTGGAACAGGGGGAATAGTAGATTCAAAATAAAAAAATTGGTGGTTCAAATTATTGGATGAACTTCGTGAACCGTCATGGCAGTGTGTCATGCCATAGGTTTTGGCCCTACGAATAACAACTTCTTTTCTGTATCTTAGTAAAACAACAGTGGTTGGAGATGTAAAAAACCTACTTCCCTGTTTATCTTTCTCTTTTCTTGGATGATTAGGCAATTATGCCCAGTTGTCCTTTATACTATTCTTTTTTTGTTTGGATGCTTTTCACATGTACCTGTACAGGCTCCACAATGTCACATTATCAGTTGAAAAAAGGACACCGCTGAATTCTTGATAGTGACATACTC] [+] EMBL AK073675 [GCTTCTTCTCGCGGCTGCGCGATGGAGAGCTGGGTCCGCGCGGTGGTGGAGGCTATCCACTCATCTCGCGCCCAGGCCGTCATCTACCTCGCCGGCGGCGCCTCGCAGGCGCTCGGGTGGCTGCTGTCCGTGCCCGGCGCGTCCGGCACCGTCCTCGAGGTCGTCGTGCCCTACTCCATGGCCTCCATGGCGCAGCTGCTCGGCAAGATGCCCTTGCAGTTCACCAGCAAGCAGGCCGCAGAGGACATGGCATTGGCCGCGTTCAACCGCGCCCTCAAGCTTTCTGGACCAGGTCTACAAGTAATGGGTGTTGGCTTCACTGGGTCACTGGCTAGCTCACGTCCAAAACATGGGTTTACGGAGCAGAGAGGAAGAAGATAAAGTTTCAAGCTACTTTCTGCTCAAGGCAATTGCAGACGGCTGCAAAGTTCCTGCAACCATTCAGTCAGATGTTCAAGAACCTGAACTTCCAAAAGAAAGCGTGGAACAATTTGATGAAGACCAAGAACTCCAGCAAGTTATTGATGGGCAAGTCTGCATGAAAGTGTATCACTTTTCTGATTCAATGGATAAAAACTTCAACAGGAAAATAATTCTACCTGGTTCATTCAATCCCCTGCATGATGGACACCTTAGGCTATTAGAAGTTGCATCAAGCATGTGTGATGATGGTCTTCCATGCTTTGAGATATCAGCAATCAATGCCGACAAACCTCCACTATCTATCGCAGAAATCAAGCGCCGGGTTGAGCAATTTAGAAAAGTAGGGAAGAATGTGATAATATCTAACCAACCATACTTTTACAAGAAAGCGGAGCTATTTCCAGGCAGTGCATTTGTAATCGGTGCAGACACTGCAGCTAGGCTTGTTAATCCTAAGTATTATGGAGGTGATTACAATAGAATGCTAGAGATACTTCTCGAATGTAAAAACACAGGTACAACATTTCTTGTTGGTGGTCGAAATATTGAAGGAGTTTTCAAGGTCCTTGAAGATTTGGACATTCCAGTCGAGTTAAGGGAAATGTTTATCTCTATACCAGAGGAGAAGTTTCGCATGGATATTTCATCTACAGATATAAGAAAAAAACAAGGGCCTTGATGTATCAAACATGCTGTTCTTCTTATATACTCCCCCCGTCACCCCGTCCTAAAATATAGCAACATGTCTAATCGATTACTAAGTTGCTATATTTTGGAACAGGGGGAATAGTAGATTCAAAATAAAAAAATTGGTGGTTCAAATTATTGGATGAACTTCGTGAACCGTCATGGCAGTGTGTCATGCCATAGGTTTTGGCCCTACGAATAACAACTTCTTTTCTGTATCTTAGTAAAACAACAGTGGTTGGAGATGTAAAAAACCTACTTCCCTGTTTATCTTTCTCTTTTCTTGGATGATTAGGCAATTATGCCCAGTTGTCCTTTATACTATTCTTTTTTTGTTTGGATGCTTTTCACATGTACCTGTACAGGCTCCACAATGTCACATTATCAGTTGAAAAAAGGACACCGCTGAATTCTTGATAGTGACATACTC] consensusID : consensus_13314#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1535 fasta sequence [CTCGCGCCCAGGCCGTCATCTACCTCGCCGGCGGCGCCTCGCAGGCGCTCGGGTGGCTGCTGTCCGTGCCCGGCGCGTCCGGCACCGTCCTCGAGGTCGTCGTGCCCTACTCCATGGCCTCCATGGCGCAGCTGCTCGGCAAGATGCCCTTGCAGTTCACCAGCAAGCAGGCCGCAGAGGACATGGCATTGGCCGCGTTCAACCGCGCCCTCAAGCTTTCTGGACCAGGTCTACAAGTAATGGGTGTTGGCTTCACTGGGTCACTGGCTAGCTCACGTCCAAAACATGGTTCTATGTGTCAACACGAACACAAAATTGCCTCAGGACATCACATGTTACATTGTCAAAGGGTTTACGGAGCAGAGAGGAAGAAGATAAAGTTTCAAGCTACTTTCTGCTCAAGGCAATTGCAGACGGCTGCAAAGTTCCTGCAACCATTCAGTCAGATGTTCAAGAACCTGAACTTCCAAAAGAAAGCGTGGAACAATTTGATGAAGACCAAGAACTCCAGCAAGTTATTGATGGGCAAGTCTGCATGAAAGTGTATCACTTTTCTGATTCAATGGATAAAAACTTCAACAGGAAAATAATTCTACCTGGTTCATTCAATCCCCTGCATGATGGACACCTTAGGCTGTTAGAAGTTGCATCAAGCATGTGTGATGATGGTCTTCCATGCTTTGAGATATCAGCAATCAATGCCGACAAACCTCCACTATCTATCGCAGAAATCAAGCGCCGGGTTGAGCAATTTAGAAAAGTAGGGAAGAATGTGATAATATCTAACCAACCATACTTTTACAAGAAAGCGGAGCTATTTCCAGGCAGTGCATTTGTAATCGGTGCAGACACTGCAGCTAGGCTTGTTAATCCTAAGTATTATGGAGGTGATTACAATAGAATGCTAGAGATACTTCTCGAATGTAAAAACACAGGTACAACATTTCTTGTTGGTGGTCGAAATATTGAAGGAGTTTTCAAGGTCCTTGAAGATTTGGACATTCCAGTCGAGTTAAGGGAAATGTTTATCTCTATACCAGAGGAGAAGTTTCGCATGGATATTTCATCTACAGATATAAGAAAAAAACAAGGGCCTTGATGTATCAAACATGCTGTTCTTCTTATATACTCCCCCCGTCACCCCGTCCTAAAATATAGCAACATGTCTAATCGATTACTAAGTTGCTATATTTTGGAACAGGGGGAATAGTAGATTCAAAATAAAAAAATTGGTGGTTCAAATTATTGGATGAACTTCGTGAACCGTCATGGCAGTGTGTCATGCCATAGGTTTTGGCCCTACGAATAACAACTTCTTTTCTGTATCTTAGTAAAACAACAGTGGTTGGAGATGTAAAAAACCTACTTCCCTGTTTATCTTTCTCTTTTCTTGGATGATTAGGCAATTATGCCCAGTTGTCCTTTATACTATTCTTTTTTTGTTTGGATGCTTTTCACATGTACCTGTACAGGCTCCACAATGTCACATTATGAGTTGAAAAAAGGACACCGCTGAATTCTTGAT-AATAAAAGGA] [+] EMBL CB666335 [CTCGCGCCCAGGCCGTCATCTACCTCGCCGGCGGCGCCTCGCAGGCGCTCGGGTGGCTGCTGTCCGTGCCCGGCGCGTCCGGCACCGTCCTCGAGGTCGTCGTGCCCTACTCCATGGCCTCCATGGCGCAGCTGCTCGGCAAGATGCCCTTGCAGTTCACCAGCAAGCAGGCCGCAGAGGACATGGCATTGGCCGCGTTCAACCGCGCCCTCAAGCTTTCTGGACCAGGTCTACAAGTAATGGGTGTTGGCTTCACTGGGTCACTGGCTAGCTCACGTCCAAAACATGGTTCTATGTGTCAACACGAACACAAAATTGCCTCAGGACATCACATGTTACATTGTCAAAGGGTTTACGGAGCAGAGAGGAAGAAGATAAAGTTTCAAGCTACTTTCTGCTCAAGGCAATTGCAGACGGCTGCAAAGTTCCTGCAACCATTCAGTCAGATGTTCAAGAACCTGAACTTCCAAAAGAAAGCGTGGAACAATTTGATGAAGACCAAGAACTCCAGCAAGTTATTGATGGGCAAGTCTGCATGAAAGTGTATCACTTTTCTGATTCAATGGATAAAAACTTCAACAGGAAAATAATTCTACCTGGTTCATTCAATCCCCTGCATGATGGACACCTTAGGCTGTTAGAAGTTGCATCAAGCATGTGTGATGATGGTCTTCCATGCTTTGAGATATCAGCAATCAATGCCGACAAACCTCCACTATCTATCGCAGAAATCAAGCGCCGGGTTGAGCAATTTAGAAAAGTAGGGAAGAATGTGATAATATCTAACCAACCATACTTTTACAAGAAAGCGGAGCTATT ] [-] EMBL CB661123 [ TATCTATCGCAGAAATCAAGCGCCGGGTTGAGCAATTTAGAAAAGTAGGGAAGAATGTGATAATATCTAACCAACCATACTTTTACAAGAAAGCGGAGCTATTTCCAGGCAGTGCATTTGTAATCGGTGCAGACACTGCAGCTAGGCTTGTTAATCCTAAGTATTATGGAGGTGATTACAATAGAATGCTAGAGATACTTCTCGAATGTAAAAACACAGGTACAACATTTCTTGTTGGTGGTCGAAATATTGAAGGAGTTTTCAAGGTCCTTGAAGATTTGGACATTCCAGTCGAGTTAAGGGAAATGTTTATCTCTATACCAGAGGAGAAGTTTCGCATGGATATTTCATCTACAGATATAAGAAAAAAACAAGGGCCTTGATGTATCAAACATGCTGTTCTTCTTATATACTCCCCCCGTCACCCCGTCCTAAAATATAGCAACATGTCTAATCGATTACTAAGTTGCTATATTTTGGAACAGGGGGAATAGTAGATTCAAAATAAAAAAATTGGTGGTTCAAATTATTGGATGAACTTCGTGAACCGTCATGGCAGTGTGTCATGCCATAGGTTTTGGCCCTACGAATAACAACTTCTTTTCTGTATCTTAGTAAAACAACAGTGGTTGGAGATGTAAAAAACCTACTTCCCTGTTTATCTTTCTCTTTTCTTGGATGATTAGGCAATTATGCCCAGTTGTCCTTTATACTATTCTTTTTTTGTTTGGATGCTTTTCACATGTACCTGTACAGGCTCCACAATGTCACATTATGAGTTGAAAAAAGGACACCGCTGAATTCTTGAT AATAAAAGGA] [-] EMBL CB666336 [ AGAATGTGATAATATCTAACCAACCATACTTTTACAAGAAAGCGGAGCTATTTCCAGGCAGTGCATTTGTAATCGGTGCAGACACTGCAGCTAGGCTTGTTAATCCTAAGTATTATGGAGGTGATTACAATAGAATGCTAGAGATACTTCTCGAATGTAAAAACACAGGTACAACATTTCTTGTTGGTGGTCGAAATATTGAAGGAGTTTTCAAGGTCCTTGAAGATTTGGACATTCCAGTCGAGTTAAGGGAAATGTTTATCTCTATACCAGAGGAGAAGTTTCGCATGGATATTTCATCTACAGATATAAGAAAAAAACAAGGGCCTTGATGTATCAAACATGCTGTTCTTCTTATATACTCCCCCCGTCACCCCGTCCTAAAATATAGCAACATGTCTAATCGATTACTAAGTTGCTATATTTTGGAACAGGGGGAATAGTAGATTCAAAATAAAAAAATTGGTGGTTCAAATTATTGGATGAACTTCGTGAACCGTCATGGCAGTGTGTCATGCCATAGGTTTTGGCCCTACGAATAACAACTTCTTTTCTGTATCTTAGTAAAACAACAGTGGTTGGAGATGTAAAAAACCTACTTCCCTGTTTATCTTTCTCTTTTCTTGGATGATTAGGCAATTATGCCCAGTTGTCCTTTATACTATTCTTTTTTTGTTTGGATGCTTTTCACATGTACCTGTACAGGCTCCACAATGTCACATTATCGGTTGAAAAAAGGACACCGCTGAATTCTTGATAAATAAAAAGA] consensusID : consensus_13314#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 484 fasta sequence [AACACAGGTACAACATTTCTTGTTGGTGGTCGAAATATTGAAGGAGTTTTCAAGGTCCTTGAAGATTTGGACATTCCAGTCGAGTTAAGGGAAATGTTTATTTTTATACCAGAGGAGAAGTTTCGCATGGATATTTCATTTACAGATATAAGAAAAAAACAAGGGCCTTGATGTATCAAACATGCTGTTTTTTTTATATACTCCCCCCGTCACCCCGTCCTAAAATATAGCAACATGTTTAATCGATTACTAAGTTGCTATATTTTGGAACAGGGGGAATAGTAGATTCAAAATAAAAAAATTGGTGGTTCAAATTATTGGATGAACTTCGTGAACCGTCATGGCAGTGTGTCATGCCATAGGTTTTGGCCCTACGAATAACAACTTCTTTTCTGTATCTTAGTAAAACAACAGTGGTTGGAGATGTAAAAAACCTACTTCCCTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTC] [-] EMBL CF303899 [AACACAGGTACAACATTTCTTGTTGGTGGTCGAAATATTGAAGGAGTTTTCAAGGTCCTTGAAGATTTGGACATTCCAGTCGAGTTAAGGGAAATGTTTATTTTTATACCAGAGGAGAAGTTTCGCATGGATATTTCATTTACAGATATAAGAAAAAAACAAGGGCCTTGATGTATCAAACATGCTGTTTTTTTTATATACTCCCCCCGTCACCCCGTCCTAAAATATAGCAACATGTTTAATCGATTACTAAGTTGCTATATTTTGGAACAGGGGGAATAGTAGATTCAAAATAAAAAAATTGGTGGTTCAAATTATTGGATGAACTTCGTGAACCGTCATGGCAGTGTGTCATGCCATAGGTTTTGGCCCTACGAATAACAACTTCTTTTCTGTATCTTAGTAAAACAACAGTGGTTGGAGATGTAAAAAACCTACTTCCCTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTC] [-] EMBL CF310842 [ CCCCGTCCTAAAATATAGCAACATGTCTAATCGATTACTAAGTTGCTATATTTTGGAACAGGGGGAATAGTAGATTCAAAATAAAAAAATTGGTGGTTCAAATTATTGGATGAACTTCGTGAACCGTCATGGCAGTGTGTCATGCCATAGGTTTTGGCCCTACGAATAACAACTTCTTTTCTGTATCTTAGTAAAACAACAGTGGTTGGAGATGTAAAAAACCTACTTCCCTGTTAAAAAAAAAAAAAAAAAAAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13314#0 CGTCGTCTGGTAGCTTCTTCTCGCGGCTGCGCGATGGAGAGCTGGGTCCGCGCGGTGGTG 60 consensus_13314#1 ------------GCTTCTTCTCGCGGCTGCGCGATGGAGAGCTGGGTCCGCGCGGTGGTG 48 consensus_13314#2 ------------------------------------------------------------ consensus_13314#3 ------------------------------------------------------------ consensus_13314#0 GAGGCTATCCACTCATCTCGCGCCCAGGCCGTCATCTACCTCGCCGGCGGCGCCTCGCAG 120 consensus_13314#1 GAGGCTATCCACTCATCTCGCGCCCAGGCCGTCATCTACCTCGCCGGCGGCGCCTCGCAG 108 consensus_13314#2 ----------------CTCGCGCCCAGGCCGTCATCTACCTCGCCGGCGGCGCCTCGCAG 44 consensus_13314#3 ------------------------------------------------------------ consensus_13314#0 GCGCTCGGGTGGCTGCTGTCCGTGCCCGGCGCGTCCGGCACCGTCCTCGAGGTCGTCGTG 180 consensus_13314#1 GCGCTCGGGTGGCTGCTGTCCGTGCCCGGCGCGTCCGGCACCGTCCTCGAGGTCGTCGTG 168 consensus_13314#2 GCGCTCGGGTGGCTGCTGTCCGTGCCCGGCGCGTCCGGCACCGTCCTCGAGGTCGTCGTG 104 consensus_13314#3 ------------------------------------------------------------ consensus_13314#0 CCCTACTCCATGGCCTCCATGGCGCAGCTGCTCGGCAAGATGCCCTTGCAGTTCACCAGC 240 consensus_13314#1 CCCTACTCCATGGCCTCCATGGCGCAGCTGCTCGGCAAGATGCCCTTGCAGTTCACCAGC 228 consensus_13314#2 CCCTACTCCATGGCCTCCATGGCGCAGCTGCTCGGCAAGATGCCCTTGCAGTTCACCAGC 164 consensus_13314#3 ------------------------------------------------------------ consensus_13314#0 AAGCAGGCCGCAGAGGACATGGCATTGGCCGCGTTCAACCGCGCCCTCAAGCTTTCTGGA 300 consensus_13314#1 AAGCAGGCCGCAGAGGACATGGCATTGGCCGCGTTCAACCGCGCCCTCAAGCTTTCTGGA 288 consensus_13314#2 AAGCAGGCCGCAGAGGACATGGCATTGGCCGCGTTCAACCGCGCCCTCAAGCTTTCTGGA 224 consensus_13314#3 ------------------------------------------------------------ consensus_13314#0 CCAGGTCTACAAGTAATGGGTGTTGGCTTCACTGGGTCACTGGCTAGCTCACGTCCAAAA 360 consensus_13314#1 CCAGGTCTACAAGTAATGGGTGTTGGCTTCACTGGGTCACTGGCTAGCTCACGTCCAAAA 348 consensus_13314#2 CCAGGTCTACAAGTAATGGGTGTTGGCTTCACTGGGTCACTGGCTAGCTCACGTCCAAAA 284 consensus_13314#3 ------------------------------------------------------------ consensus_13314#0 CATGGTGAGCATAGGTTCTATGTGTCAACACGAACACAAAATTGCCTCAGGACATCACAT 420 consensus_13314#1 CATGG------------------------------------------------------- 353 consensus_13314#2 CATGGT----------TCTATGTGTCAACACGAACACAAAATTGCCTCAGGACATCACAT 334 consensus_13314#3 ------------------------------------------------------------ consensus_13314#0 GTTACATTGTCAAAGGGTTTACGGAGCAGAGAGGAAGAAGATAAAGTTTCAAGCTACTTT 480 consensus_13314#1 ----------------GTTTACGGAGCAGAGAGGAAGAAGATAAAGTTTCAAGCTACTTT 397 consensus_13314#2 GTTACATTGTCAAAGGGTTTACGGAGCAGAGAGGAAGAAGATAAAGTTTCAAGCTACTTT 394 consensus_13314#3 ------------------------------------------------------------ consensus_13314#0 CTGCTCAAGGCAATTGCAGACGGCTGCAAAGTTCCTGCAACCATTCAGTCAGATGTTCAA 540 consensus_13314#1 CTGCTCAAGGCAATTGCAGACGGCTGCAAAGTTCCTGCAACCATTCAGTCAGATGTTCAA 457 consensus_13314#2 CTGCTCAAGGCAATTGCAGACGGCTGCAAAGTTCCTGCAACCATTCAGTCAGATGTTCAA 454 consensus_13314#3 ------------------------------------------------------------ consensus_13314#0 GAACCTGAACTTCCAAAAGAAAGCGTGGAACAATTTGATGAAGACCAAGAACTCCAGCAA 600 consensus_13314#1 GAACCTGAACTTCCAAAAGAAAGCGTGGAACAATTTGATGAAGACCAAGAACTCCAGCAA 517 consensus_13314#2 GAACCTGAACTTCCAAAAGAAAGCGTGGAACAATTTGATGAAGACCAAGAACTCCAGCAA 514 consensus_13314#3 ------------------------------------------------------------ consensus_13314#0 GTTATTGATGGGCAAGTCTGCATGAAAGTGTATCACTTTTCTGATTCAATGGATAAAAAC 660 consensus_13314#1 GTTATTGATGGGCAAGTCTGCATGAAAGTGTATCACTTTTCTGATTCAATGGATAAAAAC 577 consensus_13314#2 GTTATTGATGGGCAAGTCTGCATGAAAGTGTATCACTTTTCTGATTCAATGGATAAAAAC 574 consensus_13314#3 ------------------------------------------------------------ consensus_13314#0 TTCAACAGGAAAATAATTCTACCTGGTTCATTCAATCCCCTGCATGATGGACACCTTAGG 720 consensus_13314#1 TTCAACAGGAAAATAATTCTACCTGGTTCATTCAATCCCCTGCATGATGGACACCTTAGG 637 consensus_13314#2 TTCAACAGGAAAATAATTCTACCTGGTTCATTCAATCCCCTGCATGATGGACACCTTAGG 634 consensus_13314#3 ------------------------------------------------------------ consensus_13314#0 CTGTTAGAAGTTGCATCAAGCATGTGTGATGATGGTCTTCCATGCTTTGAGATATCAGCA 780 consensus_13314#1 CTATTAGAAGTTGCATCAAGCATGTGTGATGATGGTCTTCCATGCTTTGAGATATCAGCA 697 consensus_13314#2 CTGTTAGAAGTTGCATCAAGCATGTGTGATGATGGTCTTCCATGCTTTGAGATATCAGCA 694 consensus_13314#3 ------------------------------------------------------------ consensus_13314#0 ATCAATGCCGACAAACCTCCACTATCTATCGCAGAAATCAAGCGCCGGGTTGAGCAATTT 840 consensus_13314#1 ATCAATGCCGACAAACCTCCACTATCTATCGCAGAAATCAAGCGCCGGGTTGAGCAATTT 757 consensus_13314#2 ATCAATGCCGACAAACCTCCACTATCTATCGCAGAAATCAAGCGCCGGGTTGAGCAATTT 754 consensus_13314#3 ------------------------------------------------------------ consensus_13314#0 AGAAAAG----GAAGAATGTGATAATATCTAACCAACCATACTTTTACAAGAAAGCGGAG 896 consensus_13314#1 AGAAAAGTAGGGAAGAATGTGATAATATCTAACCAACCATACTTTTACAAGAAAGCGGAG 817 consensus_13314#2 AGAAAAGTAGGGAAGAATGTGATAATATCTAACCAACCATACTTTTACAAGAAAGCGGAG 814 consensus_13314#3 ------------------------------------------------------------ consensus_13314#0 CTATTTCCAGGCAGTGCATTTGTAATCGGTGCAGACACTGCAGCTAGGCTTGTTAATCCT 956 consensus_13314#1 CTATTTCCAGGCAGTGCATTTGTAATCGGTGCAGACACTGCAGCTAGGCTTGTTAATCCT 877 consensus_13314#2 CTATTTCCAGGCAGTGCATTTGTAATCGGTGCAGACACTGCAGCTAGGCTTGTTAATCCT 874 consensus_13314#3 ------------------------------------------------------------ consensus_13314#0 AAGTATTATGGAGGTGATTACAATAGAATGCTAGAGATACTTCTCGAATGTAAAAACACA 1016 consensus_13314#1 AAGTATTATGGAGGTGATTACAATAGAATGCTAGAGATACTTCTCGAATGTAAAAACACA 937 consensus_13314#2 AAGTATTATGGAGGTGATTACAATAGAATGCTAGAGATACTTCTCGAATGTAAAAACACA 934 consensus_13314#3 ------------------------------------------------------AACACA 6 ****** consensus_13314#0 GGTACAACATTTCTTGTTGGTGGTCGAAATATTGAAGGAGTTTTCAAGGTCCTTGAAGAT 1076 consensus_13314#1 GGTACAACATTTCTTGTTGGTGGTCGAAATATTGAAGGAGTTTTCAAGGTCCTTGAAGAT 997 consensus_13314#2 GGTACAACATTTCTTGTTGGTGGTCGAAATATTGAAGGAGTTTTCAAGGTCCTTGAAGAT 994 consensus_13314#3 GGTACAACATTTCTTGTTGGTGGTCGAAATATTGAAGGAGTTTTCAAGGTCCTTGAAGAT 66 ************************************************************ consensus_13314#0 TTGGACATTCCAGTCGAGTTAAGGGAAATGTTTATCTCTATACCAGAGGAGAAGTTTCGC 1136 consensus_13314#1 TTGGACATTCCAGTCGAGTTAAGGGAAATGTTTATCTCTATACCAGAGGAGAAGTTTCGC 1057 consensus_13314#2 TTGGACATTCCAGTCGAGTTAAGGGAAATGTTTATCTCTATACCAGAGGAGAAGTTTCGC 1054 consensus_13314#3 TTGGACATTCCAGTCGAGTTAAGGGAAATGTTTATTTTTATACCAGAGGAGAAGTTTCGC 126 *********************************** * ********************** consensus_13314#0 ATGGATATTTCATCTACAGATATAAGAAAAAAACAAGGGCCTTGATGTATCAAACATGCT 1196 consensus_13314#1 ATGGATATTTCATCTACAGATATAAGAAAAAAACAAGGGCCTTGATGTATCAAACATGCT 1117 consensus_13314#2 ATGGATATTTCATCTACAGATATAAGAAAAAAACAAGGGCCTTGATGTATCAAACATGCT 1114 consensus_13314#3 ATGGATATTTCATTTACAGATATAAGAAAAAAACAAGGGCCTTGATGTATCAAACATGCT 186 ************* ********************************************** consensus_13314#0 GTTCTTCTTATATACTCCCCCCGTCACCCCGTCCTAAAATATAGCAACATGTCTAATCGA 1256 consensus_13314#1 GTTCTTCTTATATACTCCCCCCGTCACCCCGTCCTAAAATATAGCAACATGTCTAATCGA 1177 consensus_13314#2 GTTCTTCTTATATACTCCCCCCGTCACCCCGTCCTAAAATATAGCAACATGTCTAATCGA 1174 consensus_13314#3 GTTTTTTTTATATACTCCCCCCGTCACCCCGTCCTAAAATATAGCAACATGTTTAATCGA 246 *** ** ********************************************* ******* consensus_13314#0 TTACTAAGTTGCTATATTTTGGAACAGGGGGAATAGTAGATTCAAAATAAAAAAATTGGT 1316 consensus_13314#1 TTACTAAGTTGCTATATTTTGGAACAGGGGGAATAGTAGATTCAAAATAAAAAAATTGGT 1237 consensus_13314#2 TTACTAAGTTGCTATATTTTGGAACAGGGGGAATAGTAGATTCAAAATAAAAAAATTGGT 1234 consensus_13314#3 TTACTAAGTTGCTATATTTTGGAACAGGGGGAATAGTAGATTCAAAATAAAAAAATTGGT 306 ************************************************************ consensus_13314#0 GGTTCAAATTATTGGATGAACTTCGTGAACCGTCATGGCAGTGTGTCATGCCATAGGTTT 1376 consensus_13314#1 GGTTCAAATTATTGGATGAACTTCGTGAACCGTCATGGCAGTGTGTCATGCCATAGGTTT 1297 consensus_13314#2 GGTTCAAATTATTGGATGAACTTCGTGAACCGTCATGGCAGTGTGTCATGCCATAGGTTT 1294 consensus_13314#3 GGTTCAAATTATTGGATGAACTTCGTGAACCGTCATGGCAGTGTGTCATGCCATAGGTTT 366 ************************************************************ consensus_13314#0 TGGCCCTACGAATAACAACTTCTTTTCTGTATCTTAGTAAAACAACAGTGGTTGGAGATG 1436 consensus_13314#1 TGGCCCTACGAATAACAACTTCTTTTCTGTATCTTAGTAAAACAACAGTGGTTGGAGATG 1357 consensus_13314#2 TGGCCCTACGAATAACAACTTCTTTTCTGTATCTTAGTAAAACAACAGTGGTTGGAGATG 1354 consensus_13314#3 TGGCCCTACGAATAACAACTTCTTTTCTGTATCTTAGTAAAACAACAGTGGTTGGAGATG 426 ************************************************************ consensus_13314#0 TAAAAAACCTACTTCCCTGTTTATCTTTCTCTTTTCTTGGATGATTAGGCAATTATGCCC 1496 consensus_13314#1 TAAAAAACCTACTTCCCTGTTTATCTTTCTCTTTTCTTGGATGATTAGGCAATTATGCCC 1417 consensus_13314#2 TAAAAAACCTACTTCCCTGTTTATCTTTCTCTTTTCTTGGATGATTAGGCAATTATGCCC 1414 consensus_13314#3 TAAAAAACCTACTTCCCTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTC-- 484 ********************* * * * * ** * * consensus_13314#0 AGTTGTCCTTTATACTATTCTTTTTTTGTTTGGATGCTTTTCACATGTACCTGTACAGGC 1556 consensus_13314#1 AGTTGTCCTTTATACTATTCTTTTTTTGTTTGGATGCTTTTCACATGTACCTGTACAGGC 1477 consensus_13314#2 AGTTGTCCTTTATACTATTCTTTTTTTGTTTGGATGCTTTTCACATGTACCTGTACAGGC 1474 consensus_13314#3 ------------------------------------------------------------ consensus_13314#0 TCCACAATGTCACATTATCAGTTGAAAAAAGGACACCGCTGAATTCTTGATAGTGACATA 1616 consensus_13314#1 TCCACAATGTCACATTATCAGTTGAAAAAAGGACACCGCTGAATTCTTGATAGTGACATA 1537 consensus_13314#2 TCCACAATGTCACATTATGAGTTGAAAAAAGGACACCGCTGAATTCTTGATAATAAAAGG 1534 consensus_13314#3 ------------------------------------------------------------ consensus_13314#0 CTCAAAAAAAAAAAAGAAAAAAAAAAATAAAAGA 1650 consensus_13314#1 CTC------------------------------- 1540 consensus_13314#2 A--------------------------------- 1535 consensus_13314#3 ---------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||