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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13314#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1650 fasta sequence
[CGTCGTCTGGTAGCTTCTTCTCGCGGCTGCGCGATGGAGAGCTGGGTCCGCGCGGTGGTGGAGGCTATCCACTCATCTCGCGCCCAGGCCGTCATCTACCTCGCCGGCGGCGCCTCGCAGGCGCTCGGGTGGCTGCTGTCCGTGCCCGGCGCGTCCGGCACCGTCCTCGAGGTCGTCGTGCCCTACTCCATGGCCTCCATGGCGCAGCTGCTCGGCAAGATGCCCTTGCAGTTCACCAGCAAGCAGGCCGCAGAGGACATGGCATTGGCCGCGTTCAACCGCGCCCTCAAGCTTTCTGGACCAGGTCTACAAGTAATGGGTGTTGGCTTCACTGGGTCACTGGCTAGCTCACGTCCAAAACATGGTGAGCATAGGTTCTATGTGTCAACACGAACACAAAATTGCCTCAGGACATCACATGTTACATTGTCAAAGGGTTTACGGAGCAGAGAGGAAGAAGATAAAGTTTCAAGCTACTTTCTGCTCAAGGCAATTGCAGACGGCTGCAAAGTTCCTGCAACCATTCAGTCAGATGTTCAAGAACCTGAACTTCCAAAAGAAAGCGTGGAACAATTTGATGAAGACCAAGAACTCCAGCAAGTTATTGATGGGCAAGTCTGCATGAAAGTGTATCACTTTTCTGATTCAATGGATAAAAACTTCAACAGGAAAATAATTCTACCTGGTTCATTCAATCCCCTGCATGATGGACACCTTAGGCTGTTAGAAGTTGCATCAAGCATGTGTGATGATGGTCTTCCATGCTTTGAGATATCAGCAATCAATGCCGACAAACCTCCACTATCTATCGCAGAAATCAAGCGCCGGGTTGAGCAATTTAGAAAA----GGAAGAATGTGATAATATCTAACCAACCATACTTTTACAAGAAAGCGGAGCTATTTCCAGGCAGTGCATTTGTAATCGGTGCAGACACTGCAGCTAGGCTTGTTAATCCTAAGTATTATGGAGGTGATTACAATAGAATGCTAGAGATACTTCTCGAATGTAAAAACACAGGTACAACATTTCTTGTTGGTGGTCGAAATATTGAAGGAGTTTTCAAGGTCCTTGAAGATTTGGACATTCCAGTCGAGTTAAGGGAAATGTTTATCTCTATACCAGAGGAGAAGTTTCGCATGGATATTTCATCTACAGATATAAGAAAAAAACAAGGGCCTTGATGTATCAAACATGCTGTTCTTCTTATATACTCCCCCCGTCACCCCGTCCTAAAATATAGCAACATGTCTAATCGATTACTAAGTTGCTATATTTTGGAACAGGGGGAATAGTAGATTCAAAATAAAAAAATTGGTGGTTCAAATTATTGGATGAACTTCGTGAACCGTCATGGCAGTGTGTCATGCCATAGGTTTTGGCCCTACGAATAACAACTTCTTTTCTGTATCTTAGTAAAACAACAGTGGTTGGAGATGTAAAAAACCTACTTCCCTGTTTATCTTTCTCTTTTCTTGGATGATTAGGCAATTATGCCCAGTTGTCCTTTATACTATTCTTTTTTTGTTTGGATGCTTTTCACATGTACCTGTACAGGCTCCACAATGTCACATTATCAGTTGAAAAAAGGACACCGCTGAATTCTTGATAGTGACATACTCAAAAAAAAAAAAGAAAAAAAAAAATAAAAGA]
[+] EMBL AK107426 [CGTCGTCTGGTAGCTTCTTCTCGCGGCTGCGCGATGGAGAGCTGGGTCCGCGCGGTGGTGGAGGCTATCCACTCATCTCGCGCCCAGGCCGTCATCTACCTCGCCGGCGGCGCCTCGCAGGCGCTCGGGTGGCTGCTGTCCGTGCCCGGCGCGTCCGGCACCGTCCTCGAGGTCGTCGTGCCCTACTCCATGGCCTCCATGGCGCAGCTGCTCGGCAAGATGCCCTTGCAGTTCACCAGCAAGCAGGCCGCAGAGGACATGGCATTGGCCGCGTTCAACCGCGCCCTCAAGCTTTCTGGACCAGGTCTACAAGTAATGGGTGTTGGCTTCACTGGGTCACTGGCTAGCTCACGTCCAAAACATGGTGAGCATAGGTTCTATGTGTCAACACGAACACAAAATTGCCTCAGGACATCACATGTTACATTGTCAAAGGGTTTACGGAGCAGAGAGGAAGAAGATAAAGTTTCAAGCTACTTTCTGCTCAAGGCAATTGCAGACGGCTGCAAAGTTCCTGCAACCATTCAGTCAGATGTTCAAGAACCTGAACTTCCAAAAGAAAGCGTGGAACAATTTGATGAAGACCAAGAACTCCAGCAAGTTATTGATGGGCAAGTCTGCATGAAAGTGTATCACTTTTCTGATTCAATGGATAAAAACTTCAACAGGAAAATAATTCTACCTGGTTCATTCAATCCCCTGCATGATGGACACCTTAGGCTGTTAGAAGTTGCATCAAGCATGTGTGATGATGGTCTTCCATGCTTTGAGATATCAGCAATCAATGCCGACAAACCTCCACTATCTATCGCAGAAATCAAGCGCCGGGTTGAGCAATTTAGAAAA GGAAGAATGTGATAATATCTAACCAACCATACTTTTACAAGAAAGCGGAGCTATTTCCAGGCAGTGCATTTGTAATCGGTGCAGACACTGCAGCTAGGCTTGTTAATCCTAAGTATTATGGAGGTGATTACAATAGAATGCTAGAGATACTTCTCGAATGTAAAAACACAGGTACAACATTTCTTGTTGGTGGTCGAAATATTGAAGGAGTTTTCAAGGTCCTTGAAGATTTGGACATTCCAGTCGAGTTAAGGGAAATGTTTATCTCTATACCAGAGGAGAAGTTTCGCATGGATATTTCATCTACAGATATAAGAAAAAAACAAGGGCCTTGATGTATCAAACATGCTGTTCTTCTTATATACTCCCCCCGTCACCCCGTCCTAAAATATAGCAACATGTCTAATCGATTACTAAGTTGCTATATTTTGGAACAGGGGGAATAGTAGATTCAAAATAAAAAAATTGGTGGTTCAAATTATTGGATGAACTTCGTGAACCGTCATGGCAGTGTGTCATGCCATAGGTTTTGGCCCTACGAATAACAACTTCTTTTCTGTATCTTAGTAAAACAACAGTGGTTGGAGATGTAAAAAACCTACTTCCCTGTTTATCTTTCTCTTTTCTTGGATGATTAGGCAATTATGCCCAGTTGTCCTTTATACTATTCTTTTTTTGTTTGGATGCTTTTCACATGTACCTGTACAGGCTCCACAATGTCACATTATCAGTTGAAAAAAGGACACCGCTGAATTCTTGATAGTGACATACTCAc ]
[+] EMBL CB655834 [ GCGATGGCGAGCTGGGTCCGCGCGGTGGTGGAGGCTATCCACTCATCTCGCGCCCAGGCCGTCATCTACCTCGCCGGCGGCGCCTCGCAGGCGCTCGGGTGGCTGCTGTCCGTGCCCGGCGCGTCCGGCACCGTCCTCGAGGTCGTCGTGCCCTACTCCATGGCCTCCATGGCGCAGCTGCTCGGCAAGATGCCCTTGCAGTTCACCAGCAAGCAGGCCGCAGAGGACATGGCATTGGCCGCGTTCAACCGCGCCCTCAAGCTTTCTGGACCAGGTCTACAAGTAATGGGTGTTGGCTTCACTGGGTCACTGGCTAGCTCACGTCCAAAACATGGTGAGCATAGGTTCTATGTGTCAACACGAACACAAAATTGCCTCAGGACATCACATGTTACATTGTCAAAGGGTTTACGGAGCAGAGAGGAAGAAGATAAAGTTTCAAGCTACTTTCTGCTCAAGGCAATTGCAGACGGCTGCAAAGTTCCTGCAACCATTCAGTCAGATGTTCAAGAACCTGAACTTCCAAAAGAAAGCGTGGAACAATTTGATGAAGACCAAGAACTCCAGCAAGTTATTGATGGGCAAGTCTGCATGAAAGTGTATCACTTTTCTGATTCAATGGATAAAAACTTCAACAGGAAAATAATTCTACCTGGTTCATTCAATCCCCTGCATGATGGACACCTTAGGCTGTTAGAAGTTGCATCAAGCATGTGTGATGATGGTCTTCCATGCTTTGAGATATCAGCAATCAATGCCGACAANCCTCCAC ]
[+] EMBL CF310841 [ ATCTCGCGCCCAGGCCGTCATCTACCTCGCCGGCGGCGCCTCGCAGGCGCTCGGGTGGCTGCTGTCCGTGCCCGGCGCGTCCGGCACCGTCCTCGAGGTCGTCGTGCCCTACTCCATGGCCTCCATGGCGCAGCTGTTCGGCAAGATGCCCTTGCAGTTCACCAGCAAGCAGGCCGCAGAGGACATGGCATTGGCCGCGTTCAACCGCGCCCTCAAGCTTTCTGGACCAGGTCTACAAGTAATGGGTGTTGGCTTCACTGGGTCACTGGCTAGCTCACGTCCAAAACATGGTGAGCATAGGTTCTATGTGTCAACACGAACACAAAATTGCCTCAGGACATCACATGTTACATTGTCAAAGGGTTTACGGAGCAGAGAGGAAGAAGATAAAGTTTCAAGCTACTTTCTGCTCAAGGCAATTGCAGACGGCTGCAAAGTTCCTGCAACCATTCAGTCAGATGTTCAAGAACCTGAACTTCCAAAAGAAAGCGTGGAACAATTTGATGAAGACCAAGAACTCCAGCAAGTTATTGATGGGCAAGTCTGCATGAAAGTGTATCACTTTTCTGATTCAATGGATAAAAACTTCAACAGGAACATAATTCTACCTGGTTCATTCAATCCCCTGCATGA ]
[+] EMBL CB661122 [ GCGCCCAGGCCGTCATCTACCTCGCCGGCGGCGCCTCGCAGGCGCTCGGGTGGCTGCTGTCCGTGCCCGGCGCGTCCGGCACCGTCCTCGAGGTCGTCGTGCCCTACTCCATGGCCTCCATGGCGCAGCTGCTCGGCAAGATGCCCTTGCAGTTCACCAGCAAGCAGGCCGCAGAGGACATGGCATTGGCCGCGTTCAACCGCGCCCTCAAGCTTTCTGGACCAGGTCTACAAGTAATGGGTGTTGGCTTCACTGGGTCACTGGCTAGCTCACGTCCAAAACATGGTGAGCATAGGTTCTATGTGTCAACACGAACACAAAATTGCCTCAGGACATCACATGTTACATTGTCAAAGGGTTTACGGAGCAGAGAGGAAGAAGATAAAGTTTCAAGCTACTTTCTGCTCAAGGCAATTGCAGACGGCTGCAAAGTTCCTGCAACCATTCAGTCAGATGTTCAAGAACCTGAACTTCCAAAAGAAAGCGTGGAACAATTTGATGAAGACCAAGAACTCCAGCAAGTTATTGATGGGCAAGTCTGCATGAAAGTGTATCACTTTTCTGATTCAATGGATAAAAACTTCAACAGGAAAATAATTCTACCTGGTTCATTCAATCCCCTGCATGATGGACACCTTAGGCTGTTAGAAGTTGCATCAAGCATGTGTGATGATGGTCTTCCATGCTTTGAGATATCAGCAATCAATGCCGACAAACCTCCACTATCTATCGCAGAAATCAAGCGCCGGGTTGAGCAATTTAGAAAAGTAGGGAAGAATGTGATAATATCTAACCAACCATACTTTTACAAGAAAGCGGAGCTATTTCCAGGCAGTG ]
[-] EMBL CB655835 [ CTTGTTAATCCTAAGTATTATGGAGGTGATTACAATAGAATGCTAGAGATACTTCTCGAATGTAAAAACACAGGTACAACATTTCTTGTTGGTGGTCGAAATATTGAAGGAGTTTTCAAGGTCCTTGAAGATTTGGACATTCCAGTCGAGTTAAGGGAAATGTTTATTTTTATACCAGAGGAGAAGTTTCGCATGGATATTTCTTTTCCAGATATAAGAAAAAAACAAGGGCCTTGATGTATCAAACATGCTGTTTTTTTTATATACTCCCCCCGTCACCCCGTCCTAAAATATAGCAACATGTTTAATCGATTACTAAGTTGCTATATTTTGGAACAGGGGGAATAGTAGATTCAAAATAAAAAAATTGGTGGTTCAAATTATTGGATGAACTTCGTGAACCGTCATGGCAGGGTGTCATGCCATAGGTTTTGGCCCTACGAATAACAACTTCTTTTTTGTATTTTAGTAAAACAACAGTGGTTGGAGATGTAAAAAACCTACTTCCCTGTTTATCTTTCTCTTTTCTTGGAGGATTAGGCAATTATGCCCAGTTGTCCTTTATACTATTCTTTTTTTGTTTGGATGCTTTTCACATGTACCTGTACAGGCTCCCCAATGTCCCATTATCAGTTGAAAAAAGGACCCCGCTGAATTTTTGATGGTGCCAAAAAAAAAAAAAAAAAAGAAAAAAAAAAATAAAAGA]
[+] EMBL AU162179 [ TGGAGATGTAAAAAACCTACTTCCCTGTTTATCTTTCTCTTTTCTTGGATGATTAGGCAATTATGCCCAGTTGTCCTTTATACTATTCTTTTTTTGTTTGGATGCTTTTCACATGTACCTGTACAGGCTCCACAATGTCACATTATCAGTTGAAAAAAGGACACCGCTGAATTCTTGATAGTGACATACTCAAAAAAAAAAAAAAAAA ]
consensusID : consensus_13314#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1540 fasta sequence
[GCTTCTTCTCGCGGCTGCGCGATGGAGAGCTGGGTCCGCGCGGTGGTGGAGGCTATCCACTCATCTCGCGCCCAGGCCGTCATCTACCTCGCCGGCGGCGCCTCGCAGGCGCTCGGGTGGCTGCTGTCCGTGCCCGGCGCGTCCGGCACCGTCCTCGAGGTCGTCGTGCCCTACTCCATGGCCTCCATGGCGCAGCTGCTCGGCAAGATGCCCTTGCAGTTCACCAGCAAGCAGGCCGCAGAGGACATGGCATTGGCCGCGTTCAACCGCGCCCTCAAGCTTTCTGGACCAGGTCTACAAGTAATGGGTGTTGGCTTCACTGGGTCACTGGCTAGCTCACGTCCAAAACATGGGTTTACGGAGCAGAGAGGAAGAAGATAAAGTTTCAAGCTACTTTCTGCTCAAGGCAATTGCAGACGGCTGCAAAGTTCCTGCAACCATTCAGTCAGATGTTCAAGAACCTGAACTTCCAAAAGAAAGCGTGGAACAATTTGATGAAGACCAAGAACTCCAGCAAGTTATTGATGGGCAAGTCTGCATGAAAGTGTATCACTTTTCTGATTCAATGGATAAAAACTTCAACAGGAAAATAATTCTACCTGGTTCATTCAATCCCCTGCATGATGGACACCTTAGGCTATTAGAAGTTGCATCAAGCATGTGTGATGATGGTCTTCCATGCTTTGAGATATCAGCAATCAATGCCGACAAACCTCCACTATCTATCGCAGAAATCAAGCGCCGGGTTGAGCAATTTAGAAAAGTAGGGAAGAATGTGATAATATCTAACCAACCATACTTTTACAAGAAAGCGGAGCTATTTCCAGGCAGTGCATTTGTAATCGGTGCAGACACTGCAGCTAGGCTTGTTAATCCTAAGTATTATGGAGGTGATTACAATAGAATGCTAGAGATACTTCTCGAATGTAAAAACACAGGTACAACATTTCTTGTTGGTGGTCGAAATATTGAAGGAGTTTTCAAGGTCCTTGAAGATTTGGACATTCCAGTCGAGTTAAGGGAAATGTTTATCTCTATACCAGAGGAGAAGTTTCGCATGGATATTTCATCTACAGATATAAGAAAAAAACAAGGGCCTTGATGTATCAAACATGCTGTTCTTCTTATATACTCCCCCCGTCACCCCGTCCTAAAATATAGCAACATGTCTAATCGATTACTAAGTTGCTATATTTTGGAACAGGGGGAATAGTAGATTCAAAATAAAAAAATTGGTGGTTCAAATTATTGGATGAACTTCGTGAACCGTCATGGCAGTGTGTCATGCCATAGGTTTTGGCCCTACGAATAACAACTTCTTTTCTGTATCTTAGTAAAACAACAGTGGTTGGAGATGTAAAAAACCTACTTCCCTGTTTATCTTTCTCTTTTCTTGGATGATTAGGCAATTATGCCCAGTTGTCCTTTATACTATTCTTTTTTTGTTTGGATGCTTTTCACATGTACCTGTACAGGCTCCACAATGTCACATTATCAGTTGAAAAAAGGACACCGCTGAATTCTTGATAGTGACATACTC]
[+] EMBL AK073675 [GCTTCTTCTCGCGGCTGCGCGATGGAGAGCTGGGTCCGCGCGGTGGTGGAGGCTATCCACTCATCTCGCGCCCAGGCCGTCATCTACCTCGCCGGCGGCGCCTCGCAGGCGCTCGGGTGGCTGCTGTCCGTGCCCGGCGCGTCCGGCACCGTCCTCGAGGTCGTCGTGCCCTACTCCATGGCCTCCATGGCGCAGCTGCTCGGCAAGATGCCCTTGCAGTTCACCAGCAAGCAGGCCGCAGAGGACATGGCATTGGCCGCGTTCAACCGCGCCCTCAAGCTTTCTGGACCAGGTCTACAAGTAATGGGTGTTGGCTTCACTGGGTCACTGGCTAGCTCACGTCCAAAACATGGGTTTACGGAGCAGAGAGGAAGAAGATAAAGTTTCAAGCTACTTTCTGCTCAAGGCAATTGCAGACGGCTGCAAAGTTCCTGCAACCATTCAGTCAGATGTTCAAGAACCTGAACTTCCAAAAGAAAGCGTGGAACAATTTGATGAAGACCAAGAACTCCAGCAAGTTATTGATGGGCAAGTCTGCATGAAAGTGTATCACTTTTCTGATTCAATGGATAAAAACTTCAACAGGAAAATAATTCTACCTGGTTCATTCAATCCCCTGCATGATGGACACCTTAGGCTATTAGAAGTTGCATCAAGCATGTGTGATGATGGTCTTCCATGCTTTGAGATATCAGCAATCAATGCCGACAAACCTCCACTATCTATCGCAGAAATCAAGCGCCGGGTTGAGCAATTTAGAAAAGTAGGGAAGAATGTGATAATATCTAACCAACCATACTTTTACAAGAAAGCGGAGCTATTTCCAGGCAGTGCATTTGTAATCGGTGCAGACACTGCAGCTAGGCTTGTTAATCCTAAGTATTATGGAGGTGATTACAATAGAATGCTAGAGATACTTCTCGAATGTAAAAACACAGGTACAACATTTCTTGTTGGTGGTCGAAATATTGAAGGAGTTTTCAAGGTCCTTGAAGATTTGGACATTCCAGTCGAGTTAAGGGAAATGTTTATCTCTATACCAGAGGAGAAGTTTCGCATGGATATTTCATCTACAGATATAAGAAAAAAACAAGGGCCTTGATGTATCAAACATGCTGTTCTTCTTATATACTCCCCCCGTCACCCCGTCCTAAAATATAGCAACATGTCTAATCGATTACTAAGTTGCTATATTTTGGAACAGGGGGAATAGTAGATTCAAAATAAAAAAATTGGTGGTTCAAATTATTGGATGAACTTCGTGAACCGTCATGGCAGTGTGTCATGCCATAGGTTTTGGCCCTACGAATAACAACTTCTTTTCTGTATCTTAGTAAAACAACAGTGGTTGGAGATGTAAAAAACCTACTTCCCTGTTTATCTTTCTCTTTTCTTGGATGATTAGGCAATTATGCCCAGTTGTCCTTTATACTATTCTTTTTTTGTTTGGATGCTTTTCACATGTACCTGTACAGGCTCCACAATGTCACATTATCAGTTGAAAAAAGGACACCGCTGAATTCTTGATAGTGACATACTC]
consensusID : consensus_13314#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1535 fasta sequence
[CTCGCGCCCAGGCCGTCATCTACCTCGCCGGCGGCGCCTCGCAGGCGCTCGGGTGGCTGCTGTCCGTGCCCGGCGCGTCCGGCACCGTCCTCGAGGTCGTCGTGCCCTACTCCATGGCCTCCATGGCGCAGCTGCTCGGCAAGATGCCCTTGCAGTTCACCAGCAAGCAGGCCGCAGAGGACATGGCATTGGCCGCGTTCAACCGCGCCCTCAAGCTTTCTGGACCAGGTCTACAAGTAATGGGTGTTGGCTTCACTGGGTCACTGGCTAGCTCACGTCCAAAACATGGTTCTATGTGTCAACACGAACACAAAATTGCCTCAGGACATCACATGTTACATTGTCAAAGGGTTTACGGAGCAGAGAGGAAGAAGATAAAGTTTCAAGCTACTTTCTGCTCAAGGCAATTGCAGACGGCTGCAAAGTTCCTGCAACCATTCAGTCAGATGTTCAAGAACCTGAACTTCCAAAAGAAAGCGTGGAACAATTTGATGAAGACCAAGAACTCCAGCAAGTTATTGATGGGCAAGTCTGCATGAAAGTGTATCACTTTTCTGATTCAATGGATAAAAACTTCAACAGGAAAATAATTCTACCTGGTTCATTCAATCCCCTGCATGATGGACACCTTAGGCTGTTAGAAGTTGCATCAAGCATGTGTGATGATGGTCTTCCATGCTTTGAGATATCAGCAATCAATGCCGACAAACCTCCACTATCTATCGCAGAAATCAAGCGCCGGGTTGAGCAATTTAGAAAAGTAGGGAAGAATGTGATAATATCTAACCAACCATACTTTTACAAGAAAGCGGAGCTATTTCCAGGCAGTGCATTTGTAATCGGTGCAGACACTGCAGCTAGGCTTGTTAATCCTAAGTATTATGGAGGTGATTACAATAGAATGCTAGAGATACTTCTCGAATGTAAAAACACAGGTACAACATTTCTTGTTGGTGGTCGAAATATTGAAGGAGTTTTCAAGGTCCTTGAAGATTTGGACATTCCAGTCGAGTTAAGGGAAATGTTTATCTCTATACCAGAGGAGAAGTTTCGCATGGATATTTCATCTACAGATATAAGAAAAAAACAAGGGCCTTGATGTATCAAACATGCTGTTCTTCTTATATACTCCCCCCGTCACCCCGTCCTAAAATATAGCAACATGTCTAATCGATTACTAAGTTGCTATATTTTGGAACAGGGGGAATAGTAGATTCAAAATAAAAAAATTGGTGGTTCAAATTATTGGATGAACTTCGTGAACCGTCATGGCAGTGTGTCATGCCATAGGTTTTGGCCCTACGAATAACAACTTCTTTTCTGTATCTTAGTAAAACAACAGTGGTTGGAGATGTAAAAAACCTACTTCCCTGTTTATCTTTCTCTTTTCTTGGATGATTAGGCAATTATGCCCAGTTGTCCTTTATACTATTCTTTTTTTGTTTGGATGCTTTTCACATGTACCTGTACAGGCTCCACAATGTCACATTATGAGTTGAAAAAAGGACACCGCTGAATTCTTGAT-AATAAAAGGA]
[+] EMBL CB666335 [CTCGCGCCCAGGCCGTCATCTACCTCGCCGGCGGCGCCTCGCAGGCGCTCGGGTGGCTGCTGTCCGTGCCCGGCGCGTCCGGCACCGTCCTCGAGGTCGTCGTGCCCTACTCCATGGCCTCCATGGCGCAGCTGCTCGGCAAGATGCCCTTGCAGTTCACCAGCAAGCAGGCCGCAGAGGACATGGCATTGGCCGCGTTCAACCGCGCCCTCAAGCTTTCTGGACCAGGTCTACAAGTAATGGGTGTTGGCTTCACTGGGTCACTGGCTAGCTCACGTCCAAAACATGGTTCTATGTGTCAACACGAACACAAAATTGCCTCAGGACATCACATGTTACATTGTCAAAGGGTTTACGGAGCAGAGAGGAAGAAGATAAAGTTTCAAGCTACTTTCTGCTCAAGGCAATTGCAGACGGCTGCAAAGTTCCTGCAACCATTCAGTCAGATGTTCAAGAACCTGAACTTCCAAAAGAAAGCGTGGAACAATTTGATGAAGACCAAGAACTCCAGCAAGTTATTGATGGGCAAGTCTGCATGAAAGTGTATCACTTTTCTGATTCAATGGATAAAAACTTCAACAGGAAAATAATTCTACCTGGTTCATTCAATCCCCTGCATGATGGACACCTTAGGCTGTTAGAAGTTGCATCAAGCATGTGTGATGATGGTCTTCCATGCTTTGAGATATCAGCAATCAATGCCGACAAACCTCCACTATCTATCGCAGAAATCAAGCGCCGGGTTGAGCAATTTAGAAAAGTAGGGAAGAATGTGATAATATCTAACCAACCATACTTTTACAAGAAAGCGGAGCTATT ]
[-] EMBL CB661123 [ TATCTATCGCAGAAATCAAGCGCCGGGTTGAGCAATTTAGAAAAGTAGGGAAGAATGTGATAATATCTAACCAACCATACTTTTACAAGAAAGCGGAGCTATTTCCAGGCAGTGCATTTGTAATCGGTGCAGACACTGCAGCTAGGCTTGTTAATCCTAAGTATTATGGAGGTGATTACAATAGAATGCTAGAGATACTTCTCGAATGTAAAAACACAGGTACAACATTTCTTGTTGGTGGTCGAAATATTGAAGGAGTTTTCAAGGTCCTTGAAGATTTGGACATTCCAGTCGAGTTAAGGGAAATGTTTATCTCTATACCAGAGGAGAAGTTTCGCATGGATATTTCATCTACAGATATAAGAAAAAAACAAGGGCCTTGATGTATCAAACATGCTGTTCTTCTTATATACTCCCCCCGTCACCCCGTCCTAAAATATAGCAACATGTCTAATCGATTACTAAGTTGCTATATTTTGGAACAGGGGGAATAGTAGATTCAAAATAAAAAAATTGGTGGTTCAAATTATTGGATGAACTTCGTGAACCGTCATGGCAGTGTGTCATGCCATAGGTTTTGGCCCTACGAATAACAACTTCTTTTCTGTATCTTAGTAAAACAACAGTGGTTGGAGATGTAAAAAACCTACTTCCCTGTTTATCTTTCTCTTTTCTTGGATGATTAGGCAATTATGCCCAGTTGTCCTTTATACTATTCTTTTTTTGTTTGGATGCTTTTCACATGTACCTGTACAGGCTCCACAATGTCACATTATGAGTTGAAAAAAGGACACCGCTGAATTCTTGAT AATAAAAGGA]
[-] EMBL CB666336 [ AGAATGTGATAATATCTAACCAACCATACTTTTACAAGAAAGCGGAGCTATTTCCAGGCAGTGCATTTGTAATCGGTGCAGACACTGCAGCTAGGCTTGTTAATCCTAAGTATTATGGAGGTGATTACAATAGAATGCTAGAGATACTTCTCGAATGTAAAAACACAGGTACAACATTTCTTGTTGGTGGTCGAAATATTGAAGGAGTTTTCAAGGTCCTTGAAGATTTGGACATTCCAGTCGAGTTAAGGGAAATGTTTATCTCTATACCAGAGGAGAAGTTTCGCATGGATATTTCATCTACAGATATAAGAAAAAAACAAGGGCCTTGATGTATCAAACATGCTGTTCTTCTTATATACTCCCCCCGTCACCCCGTCCTAAAATATAGCAACATGTCTAATCGATTACTAAGTTGCTATATTTTGGAACAGGGGGAATAGTAGATTCAAAATAAAAAAATTGGTGGTTCAAATTATTGGATGAACTTCGTGAACCGTCATGGCAGTGTGTCATGCCATAGGTTTTGGCCCTACGAATAACAACTTCTTTTCTGTATCTTAGTAAAACAACAGTGGTTGGAGATGTAAAAAACCTACTTCCCTGTTTATCTTTCTCTTTTCTTGGATGATTAGGCAATTATGCCCAGTTGTCCTTTATACTATTCTTTTTTTGTTTGGATGCTTTTCACATGTACCTGTACAGGCTCCACAATGTCACATTATCGGTTGAAAAAAGGACACCGCTGAATTCTTGATAAATAAAAAGA]
consensusID : consensus_13314#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 484 fasta sequence
[AACACAGGTACAACATTTCTTGTTGGTGGTCGAAATATTGAAGGAGTTTTCAAGGTCCTTGAAGATTTGGACATTCCAGTCGAGTTAAGGGAAATGTTTATTTTTATACCAGAGGAGAAGTTTCGCATGGATATTTCATTTACAGATATAAGAAAAAAACAAGGGCCTTGATGTATCAAACATGCTGTTTTTTTTATATACTCCCCCCGTCACCCCGTCCTAAAATATAGCAACATGTTTAATCGATTACTAAGTTGCTATATTTTGGAACAGGGGGAATAGTAGATTCAAAATAAAAAAATTGGTGGTTCAAATTATTGGATGAACTTCGTGAACCGTCATGGCAGTGTGTCATGCCATAGGTTTTGGCCCTACGAATAACAACTTCTTTTCTGTATCTTAGTAAAACAACAGTGGTTGGAGATGTAAAAAACCTACTTCCCTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTC]
[-] EMBL CF303899 [AACACAGGTACAACATTTCTTGTTGGTGGTCGAAATATTGAAGGAGTTTTCAAGGTCCTTGAAGATTTGGACATTCCAGTCGAGTTAAGGGAAATGTTTATTTTTATACCAGAGGAGAAGTTTCGCATGGATATTTCATTTACAGATATAAGAAAAAAACAAGGGCCTTGATGTATCAAACATGCTGTTTTTTTTATATACTCCCCCCGTCACCCCGTCCTAAAATATAGCAACATGTTTAATCGATTACTAAGTTGCTATATTTTGGAACAGGGGGAATAGTAGATTCAAAATAAAAAAATTGGTGGTTCAAATTATTGGATGAACTTCGTGAACCGTCATGGCAGTGTGTCATGCCATAGGTTTTGGCCCTACGAATAACAACTTCTTTTCTGTATCTTAGTAAAACAACAGTGGTTGGAGATGTAAAAAACCTACTTCCCTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTC]
[-] EMBL CF310842 [ CCCCGTCCTAAAATATAGCAACATGTCTAATCGATTACTAAGTTGCTATATTTTGGAACAGGGGGAATAGTAGATTCAAAATAAAAAAATTGGTGGTTCAAATTATTGGATGAACTTCGTGAACCGTCATGGCAGTGTGTCATGCCATAGGTTTTGGCCCTACGAATAACAACTTCTTTTCTGTATCTTAGTAAAACAACAGTGGTTGGAGATGTAAAAAACCTACTTCCCTGTTAAAAAAAAAAAAAAAAAAAA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13314#0 CGTCGTCTGGTAGCTTCTTCTCGCGGCTGCGCGATGGAGAGCTGGGTCCGCGCGGTGGTG 60
consensus_13314#1 ------------GCTTCTTCTCGCGGCTGCGCGATGGAGAGCTGGGTCCGCGCGGTGGTG 48
consensus_13314#2 ------------------------------------------------------------
consensus_13314#3 ------------------------------------------------------------
consensus_13314#0 GAGGCTATCCACTCATCTCGCGCCCAGGCCGTCATCTACCTCGCCGGCGGCGCCTCGCAG 120
consensus_13314#1 GAGGCTATCCACTCATCTCGCGCCCAGGCCGTCATCTACCTCGCCGGCGGCGCCTCGCAG 108
consensus_13314#2 ----------------CTCGCGCCCAGGCCGTCATCTACCTCGCCGGCGGCGCCTCGCAG 44
consensus_13314#3 ------------------------------------------------------------
consensus_13314#0 GCGCTCGGGTGGCTGCTGTCCGTGCCCGGCGCGTCCGGCACCGTCCTCGAGGTCGTCGTG 180
consensus_13314#1 GCGCTCGGGTGGCTGCTGTCCGTGCCCGGCGCGTCCGGCACCGTCCTCGAGGTCGTCGTG 168
consensus_13314#2 GCGCTCGGGTGGCTGCTGTCCGTGCCCGGCGCGTCCGGCACCGTCCTCGAGGTCGTCGTG 104
consensus_13314#3 ------------------------------------------------------------
consensus_13314#0 CCCTACTCCATGGCCTCCATGGCGCAGCTGCTCGGCAAGATGCCCTTGCAGTTCACCAGC 240
consensus_13314#1 CCCTACTCCATGGCCTCCATGGCGCAGCTGCTCGGCAAGATGCCCTTGCAGTTCACCAGC 228
consensus_13314#2 CCCTACTCCATGGCCTCCATGGCGCAGCTGCTCGGCAAGATGCCCTTGCAGTTCACCAGC 164
consensus_13314#3 ------------------------------------------------------------
consensus_13314#0 AAGCAGGCCGCAGAGGACATGGCATTGGCCGCGTTCAACCGCGCCCTCAAGCTTTCTGGA 300
consensus_13314#1 AAGCAGGCCGCAGAGGACATGGCATTGGCCGCGTTCAACCGCGCCCTCAAGCTTTCTGGA 288
consensus_13314#2 AAGCAGGCCGCAGAGGACATGGCATTGGCCGCGTTCAACCGCGCCCTCAAGCTTTCTGGA 224
consensus_13314#3 ------------------------------------------------------------
consensus_13314#0 CCAGGTCTACAAGTAATGGGTGTTGGCTTCACTGGGTCACTGGCTAGCTCACGTCCAAAA 360
consensus_13314#1 CCAGGTCTACAAGTAATGGGTGTTGGCTTCACTGGGTCACTGGCTAGCTCACGTCCAAAA 348
consensus_13314#2 CCAGGTCTACAAGTAATGGGTGTTGGCTTCACTGGGTCACTGGCTAGCTCACGTCCAAAA 284
consensus_13314#3 ------------------------------------------------------------
consensus_13314#0 CATGGTGAGCATAGGTTCTATGTGTCAACACGAACACAAAATTGCCTCAGGACATCACAT 420
consensus_13314#1 CATGG------------------------------------------------------- 353
consensus_13314#2 CATGGT----------TCTATGTGTCAACACGAACACAAAATTGCCTCAGGACATCACAT 334
consensus_13314#3 ------------------------------------------------------------
consensus_13314#0 GTTACATTGTCAAAGGGTTTACGGAGCAGAGAGGAAGAAGATAAAGTTTCAAGCTACTTT 480
consensus_13314#1 ----------------GTTTACGGAGCAGAGAGGAAGAAGATAAAGTTTCAAGCTACTTT 397
consensus_13314#2 GTTACATTGTCAAAGGGTTTACGGAGCAGAGAGGAAGAAGATAAAGTTTCAAGCTACTTT 394
consensus_13314#3 ------------------------------------------------------------
consensus_13314#0 CTGCTCAAGGCAATTGCAGACGGCTGCAAAGTTCCTGCAACCATTCAGTCAGATGTTCAA 540
consensus_13314#1 CTGCTCAAGGCAATTGCAGACGGCTGCAAAGTTCCTGCAACCATTCAGTCAGATGTTCAA 457
consensus_13314#2 CTGCTCAAGGCAATTGCAGACGGCTGCAAAGTTCCTGCAACCATTCAGTCAGATGTTCAA 454
consensus_13314#3 ------------------------------------------------------------
consensus_13314#0 GAACCTGAACTTCCAAAAGAAAGCGTGGAACAATTTGATGAAGACCAAGAACTCCAGCAA 600
consensus_13314#1 GAACCTGAACTTCCAAAAGAAAGCGTGGAACAATTTGATGAAGACCAAGAACTCCAGCAA 517
consensus_13314#2 GAACCTGAACTTCCAAAAGAAAGCGTGGAACAATTTGATGAAGACCAAGAACTCCAGCAA 514
consensus_13314#3 ------------------------------------------------------------
consensus_13314#0 GTTATTGATGGGCAAGTCTGCATGAAAGTGTATCACTTTTCTGATTCAATGGATAAAAAC 660
consensus_13314#1 GTTATTGATGGGCAAGTCTGCATGAAAGTGTATCACTTTTCTGATTCAATGGATAAAAAC 577
consensus_13314#2 GTTATTGATGGGCAAGTCTGCATGAAAGTGTATCACTTTTCTGATTCAATGGATAAAAAC 574
consensus_13314#3 ------------------------------------------------------------
consensus_13314#0 TTCAACAGGAAAATAATTCTACCTGGTTCATTCAATCCCCTGCATGATGGACACCTTAGG 720
consensus_13314#1 TTCAACAGGAAAATAATTCTACCTGGTTCATTCAATCCCCTGCATGATGGACACCTTAGG 637
consensus_13314#2 TTCAACAGGAAAATAATTCTACCTGGTTCATTCAATCCCCTGCATGATGGACACCTTAGG 634
consensus_13314#3 ------------------------------------------------------------
consensus_13314#0 CTGTTAGAAGTTGCATCAAGCATGTGTGATGATGGTCTTCCATGCTTTGAGATATCAGCA 780
consensus_13314#1 CTATTAGAAGTTGCATCAAGCATGTGTGATGATGGTCTTCCATGCTTTGAGATATCAGCA 697
consensus_13314#2 CTGTTAGAAGTTGCATCAAGCATGTGTGATGATGGTCTTCCATGCTTTGAGATATCAGCA 694
consensus_13314#3 ------------------------------------------------------------
consensus_13314#0 ATCAATGCCGACAAACCTCCACTATCTATCGCAGAAATCAAGCGCCGGGTTGAGCAATTT 840
consensus_13314#1 ATCAATGCCGACAAACCTCCACTATCTATCGCAGAAATCAAGCGCCGGGTTGAGCAATTT 757
consensus_13314#2 ATCAATGCCGACAAACCTCCACTATCTATCGCAGAAATCAAGCGCCGGGTTGAGCAATTT 754
consensus_13314#3 ------------------------------------------------------------
consensus_13314#0 AGAAAAG----GAAGAATGTGATAATATCTAACCAACCATACTTTTACAAGAAAGCGGAG 896
consensus_13314#1 AGAAAAGTAGGGAAGAATGTGATAATATCTAACCAACCATACTTTTACAAGAAAGCGGAG 817
consensus_13314#2 AGAAAAGTAGGGAAGAATGTGATAATATCTAACCAACCATACTTTTACAAGAAAGCGGAG 814
consensus_13314#3 ------------------------------------------------------------
consensus_13314#0 CTATTTCCAGGCAGTGCATTTGTAATCGGTGCAGACACTGCAGCTAGGCTTGTTAATCCT 956
consensus_13314#1 CTATTTCCAGGCAGTGCATTTGTAATCGGTGCAGACACTGCAGCTAGGCTTGTTAATCCT 877
consensus_13314#2 CTATTTCCAGGCAGTGCATTTGTAATCGGTGCAGACACTGCAGCTAGGCTTGTTAATCCT 874
consensus_13314#3 ------------------------------------------------------------
consensus_13314#0 AAGTATTATGGAGGTGATTACAATAGAATGCTAGAGATACTTCTCGAATGTAAAAACACA 1016
consensus_13314#1 AAGTATTATGGAGGTGATTACAATAGAATGCTAGAGATACTTCTCGAATGTAAAAACACA 937
consensus_13314#2 AAGTATTATGGAGGTGATTACAATAGAATGCTAGAGATACTTCTCGAATGTAAAAACACA 934
consensus_13314#3 ------------------------------------------------------AACACA 6
******
consensus_13314#0 GGTACAACATTTCTTGTTGGTGGTCGAAATATTGAAGGAGTTTTCAAGGTCCTTGAAGAT 1076
consensus_13314#1 GGTACAACATTTCTTGTTGGTGGTCGAAATATTGAAGGAGTTTTCAAGGTCCTTGAAGAT 997
consensus_13314#2 GGTACAACATTTCTTGTTGGTGGTCGAAATATTGAAGGAGTTTTCAAGGTCCTTGAAGAT 994
consensus_13314#3 GGTACAACATTTCTTGTTGGTGGTCGAAATATTGAAGGAGTTTTCAAGGTCCTTGAAGAT 66
************************************************************
consensus_13314#0 TTGGACATTCCAGTCGAGTTAAGGGAAATGTTTATCTCTATACCAGAGGAGAAGTTTCGC 1136
consensus_13314#1 TTGGACATTCCAGTCGAGTTAAGGGAAATGTTTATCTCTATACCAGAGGAGAAGTTTCGC 1057
consensus_13314#2 TTGGACATTCCAGTCGAGTTAAGGGAAATGTTTATCTCTATACCAGAGGAGAAGTTTCGC 1054
consensus_13314#3 TTGGACATTCCAGTCGAGTTAAGGGAAATGTTTATTTTTATACCAGAGGAGAAGTTTCGC 126
*********************************** * **********************
consensus_13314#0 ATGGATATTTCATCTACAGATATAAGAAAAAAACAAGGGCCTTGATGTATCAAACATGCT 1196
consensus_13314#1 ATGGATATTTCATCTACAGATATAAGAAAAAAACAAGGGCCTTGATGTATCAAACATGCT 1117
consensus_13314#2 ATGGATATTTCATCTACAGATATAAGAAAAAAACAAGGGCCTTGATGTATCAAACATGCT 1114
consensus_13314#3 ATGGATATTTCATTTACAGATATAAGAAAAAAACAAGGGCCTTGATGTATCAAACATGCT 186
************* **********************************************
consensus_13314#0 GTTCTTCTTATATACTCCCCCCGTCACCCCGTCCTAAAATATAGCAACATGTCTAATCGA 1256
consensus_13314#1 GTTCTTCTTATATACTCCCCCCGTCACCCCGTCCTAAAATATAGCAACATGTCTAATCGA 1177
consensus_13314#2 GTTCTTCTTATATACTCCCCCCGTCACCCCGTCCTAAAATATAGCAACATGTCTAATCGA 1174
consensus_13314#3 GTTTTTTTTATATACTCCCCCCGTCACCCCGTCCTAAAATATAGCAACATGTTTAATCGA 246
*** ** ********************************************* *******
consensus_13314#0 TTACTAAGTTGCTATATTTTGGAACAGGGGGAATAGTAGATTCAAAATAAAAAAATTGGT 1316
consensus_13314#1 TTACTAAGTTGCTATATTTTGGAACAGGGGGAATAGTAGATTCAAAATAAAAAAATTGGT 1237
consensus_13314#2 TTACTAAGTTGCTATATTTTGGAACAGGGGGAATAGTAGATTCAAAATAAAAAAATTGGT 1234
consensus_13314#3 TTACTAAGTTGCTATATTTTGGAACAGGGGGAATAGTAGATTCAAAATAAAAAAATTGGT 306
************************************************************
consensus_13314#0 GGTTCAAATTATTGGATGAACTTCGTGAACCGTCATGGCAGTGTGTCATGCCATAGGTTT 1376
consensus_13314#1 GGTTCAAATTATTGGATGAACTTCGTGAACCGTCATGGCAGTGTGTCATGCCATAGGTTT 1297
consensus_13314#2 GGTTCAAATTATTGGATGAACTTCGTGAACCGTCATGGCAGTGTGTCATGCCATAGGTTT 1294
consensus_13314#3 GGTTCAAATTATTGGATGAACTTCGTGAACCGTCATGGCAGTGTGTCATGCCATAGGTTT 366
************************************************************
consensus_13314#0 TGGCCCTACGAATAACAACTTCTTTTCTGTATCTTAGTAAAACAACAGTGGTTGGAGATG 1436
consensus_13314#1 TGGCCCTACGAATAACAACTTCTTTTCTGTATCTTAGTAAAACAACAGTGGTTGGAGATG 1357
consensus_13314#2 TGGCCCTACGAATAACAACTTCTTTTCTGTATCTTAGTAAAACAACAGTGGTTGGAGATG 1354
consensus_13314#3 TGGCCCTACGAATAACAACTTCTTTTCTGTATCTTAGTAAAACAACAGTGGTTGGAGATG 426
************************************************************
consensus_13314#0 TAAAAAACCTACTTCCCTGTTTATCTTTCTCTTTTCTTGGATGATTAGGCAATTATGCCC 1496
consensus_13314#1 TAAAAAACCTACTTCCCTGTTTATCTTTCTCTTTTCTTGGATGATTAGGCAATTATGCCC 1417
consensus_13314#2 TAAAAAACCTACTTCCCTGTTTATCTTTCTCTTTTCTTGGATGATTAGGCAATTATGCCC 1414
consensus_13314#3 TAAAAAACCTACTTCCCTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTC-- 484
********************* * * * * ** * *
consensus_13314#0 AGTTGTCCTTTATACTATTCTTTTTTTGTTTGGATGCTTTTCACATGTACCTGTACAGGC 1556
consensus_13314#1 AGTTGTCCTTTATACTATTCTTTTTTTGTTTGGATGCTTTTCACATGTACCTGTACAGGC 1477
consensus_13314#2 AGTTGTCCTTTATACTATTCTTTTTTTGTTTGGATGCTTTTCACATGTACCTGTACAGGC 1474
consensus_13314#3 ------------------------------------------------------------
consensus_13314#0 TCCACAATGTCACATTATCAGTTGAAAAAAGGACACCGCTGAATTCTTGATAGTGACATA 1616
consensus_13314#1 TCCACAATGTCACATTATCAGTTGAAAAAAGGACACCGCTGAATTCTTGATAGTGACATA 1537
consensus_13314#2 TCCACAATGTCACATTATGAGTTGAAAAAAGGACACCGCTGAATTCTTGATAATAAAAGG 1534
consensus_13314#3 ------------------------------------------------------------
consensus_13314#0 CTCAAAAAAAAAAAAGAAAAAAAAAAATAAAAGA 1650
consensus_13314#1 CTC------------------------------- 1540
consensus_13314#2 A--------------------------------- 1535
consensus_13314#3 ----------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||