These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13316#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1068 fasta sequence [GAGTAGAAAACAACAGCCAAGAAGGCCCCTTGCAGCGGCGGCAACACTGAAGCAACCAAAATCTTACAGCGGCGGCAGCCATG-GCGT-CGTTAGGAGCTAACAGCCATGGCCGAGTCCTGCACACCTGCACACTCTCCCCAAAGCCGGTTACAGCTTTGAGCAGAAGCATGGCGGCCATTCCTGGACACCATGTTTTTCAGTCTCCACGAGCTCGGATTGCAGTGCGAGCTAGCACCGAGCGTGCGACCTGGCTGCCTGGGCTCGATCCACCTCCTCACCTCGACGGCACATTACCTGGCGATTTCGGATTTGATCCCCTGGGTCTCGGGGAGGAACCGGCAAACTTGAAATGGTATGTTCAAGCCGAACTTGTGCACTGCCGGTTTGCGATGGCA-GGGGTTGCTGGCATCCTTGCGAC-TGATTTGATACGTGTATCA--GGAATCAACAACCTGCCAGTG-TGGTTTGAAGCAGGTGCAAC-AAAATTCGACTTCGCTAACACCACGGCACTCTTCTTTGTCCAGCTTCTCTTGATGGGATTTGCTGAAACCAAGAGGTACATGGACTTTATCAATCCAGGATCACAAGCAGAGGAAGGAACATTCCTTGGTATCGAGGCTGCACTTGCAGGTTCACAGCCAGGCTACCCTGGGGGTCCACTGTTTAATCCACTAGGACTGGCCAAGGATATAGAGAATGCAGATGAAGCGAAACTGAAAGAAATCAAGAATGGGAGGTTGGCTATGGTTGCTATGCTTGGGTTTATTGTGCAAGCATCTGTGACTCATGTTGGACCAATCGACAATCTTTTGACACATCTTTCAGACCCGTTCAACAAAAATATCATCCACACCCTCTCCTCTTCTTGAAAATATCCTGGACCGTCAAACTTTTTGTTCCTTTCTTCATCTTAATTAATCTATCAATCAACACATTCACAATGTTCGTGGACAACATAAGTAACTCACTACGCAATTGCCAAGTCCATGTGTTATGAAAATGGAGATTCACCGGATGCATAACTACATTAATTGTTTATGGAAAAGGAAATTTCCTTCCCTAGCAAAAAAA] [+] EMBL CF300261 [GAGTAGAAAACAACAGCCAAGAAGGCCCCTTGCAGCGGCGGCAACACTGAAGCAACCAAAATCTTACAGCGGCGGCAGCCATG GCGT CGTTAGGAGCTAACAGCCATGGCCGAGTCCTGCACACCTGCACACTCTCCCCAAAGCCGGTTACAGCTTTGAGCAGAAGCATGGCGGCCATTCCTGGACACCATGTTTTTCAGTCTCCACGAGCTCGGATTGCAGTGCGAGCTAGCACCGAGCGTGCGACCTGGCTGCCTGGGCTCGATCCACCTCCTCACCTCGACGGCACATTACCTGGCGATTTCGGATTTGATCCCCTGGGTCTCGGGGAGGAACCGGCAAACTTGAAATGGTATGTTCAAGCCGAACTTGTGCACTGCCG ] [+] EMBL AW070157 [ ggcaggtCAGCCAAGAAGGCCCCTTGCAGCGGCGGCAACACTGAAGCAACCAAAATCTTACAGCGGCGGCAGCCATG GCGT CGTTAGGAGCTAACAGCCATGGCCGAGTCCTGCACACCTGCACACTCTCCCCAAAGCCGGTTACAGCTTTGAGCAGAAGCATGGCGGCCATTCCTGGACACCATGTTTTTCAGTCTCCACGAGCTCGGATTGCAGTGCGAGCTAGCACCGAGCGTGCGACCTGGCTGCCTGGGCTCGATC ] [+] EMBL CF311678 [ AGAAGGCCCCTTGCAGCGGCGGCAACACTGAAGCAACCAAAATCTTACAGCGGCGGCAGCCATG GCGT CGTTAGGAGCTAACAGCCATGGCCGAGTCCTGCACACCTGCACACTCTCCCCAAAGCCGGTTACAGCTTTGAGCAGAAGCATGGCGGCCATTCCTGGACACCATGTTTTTCAGTCTCCACGAGCTCGGATTGCAGTGCGAGCTAGCACCGAGCGTGCGACCTGGCTGCCTGGGCTCGATCCACCTCCTCACCTCGACGGCACATTACCTGGCGATTTCGGATTTGATCCCCTGGGTCTCGGGGAGGAACCGGCAAACTTGAAATGGTATGTTCAAGCCGAACTTGTGCACTGCCGGTTTGCGATGGCA GGGGTTGCTGGCATCCTTGCGAC TGATTTGATACGTGTATCA GGAATCAACAACCTGCCAGTG TGGTTTGAAGCAGGTGCAAC AAAATTCGACTTCGCTAACACCACGGCACTCTTCTTTGTCCAGCTTCTCTTGATGGGATTTGCTGAAACCAAGAGGTACATGGACTTTATCAATCCAGGATCACAAGCAGAGGAAGGAACATTCCTTGGTATCGAGGCTGCACTTGC ] [+] EMBL CF325551 [ GAAGGCCCCTTGCAGCGGCGGCAACACTGAAGCAACCAAAATCTTACAGCGGCGGCAGCCATG GCGT CGTTAGGAGCTAACAGCCATGGCCGAGTCCTGCACACCTGCACACTCTCCCCAAAGCCGGTTACAGCTTTGAGCAGAAGCATGGCGGCCATTCCTGGACACCATGTTTTTCAGTCTCCACGAGCTCGGATTGCAGTGCGAGCTAGCACCGAGCGTGCGACCTGGCTGCCTGGGCTCGATCCACCTCCTCACCTCGACGGCACATTACCTGGCGATTTCGGATTTGATCCCCTGGGTCTCGGGGAGGAACCGGCCAACTTGAAATGGTATGTT ] [+] EMBL CF302103 [ CAACACTGAAGCAACCAAAATCTTACAGCGGCGGCAGCCATG GCGT CGTTAGGAGCTAACAGCCATGGCCGAGTCCTGCACACCTGCACACTCTCCCCAAAGCCGGTTACAGCTTTGAGCAGAAGCATGGCGGCCATTCCTGGACACCATGTTTTTCAGTCTCCACGAGCTCGGATTGCAGTGCGAGCTAGCACCGAGCGTGCGACCTGGCTGCCTGGGCTCGATCCACCTCCTCACCTCGACGGCACATTACCTGGCGATTTCGGATTTGATCCCCTGGGTCTCGGGGAGGAACCGGCAAACTTGAAATGGTATGTTCAAGCCGAACTTGTGCACTGCCGGTTTGCGATGGCA GGGGTTGCTGGCATCCTTGCGAC TGATTTGATACGTGTATCA GGAATCAACAACCTGCCAGTG TGGTTTGAAGCAGGTGCAAC AAAATTCGACTTCGCTAACACCACGGCACTCTTCTTTGTCCAGCTTCTCTTGATGGGATTTGCTGAAACCAAGAGGTACATGGACTTTATCAATCCAGGATCACAAGCAGAGGAAGGAACATTCCTTGGTATCGAGGCTG ] [+] EMBL AK066291 [ CACTGAAGCAACCAAAATCTTACAGCGGCGGCAGCCATG GCGT CGTTAGGAGCTAACAGCCATGGCCGAGTCCTGCACACCTGCACACTCTCCCCAAAGCCGGTTACAGCTTTGAGCAGAAGCATGGCGGCCATTCCTGGACACCATGTTTTTCAGTCTCCACGAGCTCGGATTGCAGTGCGAGCTAGCACCGAGCGTGCGACCTGGCTGCCTGGGCTCGATCCACCTCCTCACCTCGACGGCACATTACCTGGCGATTTCGGATTTGATCCCCTGGGTCTCGGGGAGGAACCGGCAAACTTGAAATGGTATGTTCAAGCCGAACTTGTGCACTGCCGGTTTGCGATGGCA GGGGTTGCTGGCATCCTTGCGAC TGATTTGATACGTGTATCA GGAATCAACAACCTGCCAGTG TGGTTTGAAGCAGGTGCAAC AAAATTCGACTTCGCTAACACCACGGCACTCTTCTTTGTCCAGCTTCTCTTGATGGGATTTGCTGAAACCAAGAGGTACATGGACTTTATCAATCCAGGATCACAAGCAGAGGAAGGAACATTCCTTGGTATCGAGGCTGCACTTGCAGGTTCACAGCCAGGCTACCCTGGGGGTCCACTGTTTAATCCACTAGGACTGGCCAAGGATATAGAGAATGCAGATGAAGCGAAACTGAAAGAAATCAAGAATGGGAGGTTGGCTATGGTTGCTATGCTTGGGTTTATTGTGCAAGCATCTGTGACTCATGTTGGACCAATCGACAATCTTTTGACACATCTTTCAGACCCGTTCAACAAAAATATCATCCACACCCTCTCCTCTTCTTGAAAATATCCTGGACCGTCAAACTTTTTGTTCCTTTCTTCATCTTAATTAATCTATCAATCAACACATTCACAATGTTCGTGGACAACATAAGTAACTCACTACGCAATTGCCAAGTCCATGTGTTATGAAAATGGAGATTCACCGGATGCATAACTACATTAATTGTTTATGGAAAAGGAAATTTC ] [+] EMBL OSS14351A [ CAGCGGCGGCA CATGNGCGTNCGTTAGGAGCTAACAGCCATGGCCGAGTCCTGCACACCTGCACACTCTCCCCAAAGCCGGTTACAGCTTTGAGCAGAAGCATGGC GCCATTCCTGGACACCATGTTTTTCAGTCTCCACGAGCTCGGATTGCAGTGCGAGCTAGCACCGAGCGTGCGACCTGGCTGCCTGGGCTCGATCCACCTCCTCACCTCGACGGCACATTACCTGGCGATTTCGGATTTGATCCCCTGGGTCTCGGGGAGGAACCGGCAAACTTGAAATGGTATGTTCAAGCCGAACTTGTGCACTTCCGGTTTNCGATGGCAGGGGGTTTCTGGCATCCTTGCGACTTAATTTGATACGTGTATCAAGGGAATCAACAACCTGCCAGTGTTGGTTTTAAGCAGGTTCAACAAAAATTCGATTTCGgt ] [-] EMBL CF311679 [ TCA GGAATCAACAACCTGCCAGTG TGGTTTGAAGCAGGTGCAAC AAAATTCGACTTCGCTAACACCACGGCACTCTTCTTTGTCCAGCTTCTCTTGATGGGATTTGCTGAAACCAAGAGGTACATGGACTTTATCAATCCAGGATCACAAGCAGAGGAAGGAACATTCCTTGGTATCGAGGCTGCACTTGCAGGTTCACAGCCAGGCTACCCTGGGGGTCCACTGTTTAATCCACTAGGACTGGCCAAGGATATAGAGAATGCAGATGAAGCGAAACTGAAAGAAATCAAGAATGGGAGGTTGGCTATGGTTGCTATGCTTGGGTTTATTGTGCAAGCATCTGTGACTCATGTTGGACCAATCGACAATCTTTTGACACATCTTTCAGACCCGTTCAACAAAAATATCATCCACACCCTCTCCTCTTCTTGAAAATATCCTGGACCGTCAAACTTTTTGTTCCTTTCTTCATCTTAATTAATCTATCAATCAACACATTCACAATGTTCGTGGACAACATAAGTAACTCACTACGCAATTGCCAAGTCCATGTGTTATGAAAATGGAGATTCACCGGATGCATAACTACATTAATTGTTTA GGAAAAGGAAATTTCCTTCCCTAGCAAAAAAA] [+] EMBL AK061711 [ CACAGCCAGGCTACCCTGGGGGTCCACTGTTTAATCCACTAGGACTGGCCAAGGATATAGAGAATGCAGATGAAGCGAAACTGAAAGAAATCAAGAATGGGAGGTTGGCTATGGTTGCTATGCTTGGGTTTATTGTGCAAGCATCTGTGACTCATGTTGGACCAATCGACAATCTTTTGACACATCTTTCAGACCCGTTCAACAAAAATATCATCCACACCCTCTCCTCTTCTTGAAAATATCCTGGACCGTCAAACTTTTTGTTCCTTTCTTCATCTTAATTAATCTATCAATCAACACATTCACAATGTTCGTGGACAACATAAGTAACTCACTACGCAATTGCCAAGTCCATGTGTTATGAAAATGGAGATTCACCGGATGCATAACTACATTAATTGTTTATGGAAAAGGAAATTTC ] [-] EMBL CF302104 [ GGTCCACTGTTTAATCCACTAGGACTGGCCAAGGATATAGAGAATGCAGATGAAGCGAAACTGAAAGAAATCAAGAATGGGAGGTTGGCTATGGTTGCTATGCTTGGGTTTATTGTGCAAGCATCTGTGACTCATGTTGGACCAATCGACAATCTTTTGACACATCTTTCAGACCCGTTCAACAAAAATATCATCCACACCCTCTCCTCTTCTTGAAAATATCCTGGACCGTCAAACTTTTTGTTCCTTTCTTCATCTTAATTAATCTATCAATCAACACATTCACAATGTTCGTGGACAACATAAGTAACTCACTACGCAATTGCCAAGTCCATGTGTTATGAAAATGGAGATTCACCGGATGCATAACTACATTAATTGTTTA GGAAAAGGAAATTTCCTTCCCTAGCAAAAAA ] [-] EMBL CF300262 [ GAGAATGCAGATGAAGCGAAACTGAAAGAAATCAAGAATGGGAGGTTGGCTATGGTTGCTATGCTTGGGTTTATTGTGCAAGCATCTGTGACTCATGTTGGACCAATCGACAATCTTTTGACACATCTTTCAGACCCGTTCAACAAAAATATCATCCACACCCTCTCCTCTTCTTGAAAATATCCTGGACCGTCAAACTTTTTGTTCCTTTCTTCATCTTAATTAATCTATCAATCAACACATTCACAATGTTCGTGGACAACATAAGTAACTCACTACGCAATTGCCAAGTCCATGTGTTATGAAAATGGAGATTCACCGGATGCATAACTACATTAATTGTTTATGGAAAAGGAAATTTCCTTCCC ] consensusID : consensus_13316#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 530 fasta sequence [TNCCAGTGTGGTTTGAAGCAGGTGCAACAAAATTCGATTCGCTAACACCACGGCACTCTTCTTTGTCCAGCTTCTCTTGATGGGATTTGCTGAAACCAAGAGGTACATGGACTTTATCAATCCAGGATCACAAGCAGAGGAAGGAACATTCCTTGGTATCGAGGCTGCACTTGCAGGTTCACAGCCAGGCTNCCCTGGGGGTCCACTGTTTAATCCACTAGGACTGGCCAAGGATATAGAGAATGCAGATGAAGCGAAACTGAAAGAAATCAAGAATGGGAGGTTGGCTATGGTTGCTATGCTTGGGTTTATTGTGCAAGCATCTGTGACTCATGTTGGACCAATCGACAATCTTTTGACACATCTTTCAGACCCGTTCAACAAAAATATCATCCACACCCTCTCCTCTTCTTGAAAATATCCTGGACCGTCAAACTTTTTGTTCCTTTCTTCATCTTAATTAATCTATCAATCAACACATTCACAATGTTCGTGGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU096579 [TNCCAGTGTGGTTTGAAGCAGGTGCAACAAAATTCGATTCGCTAACACCACGGCACTCTTCTTTGTCCAGCTTCTCTTGATGGGATTTGCTGAAACCAAGAGGTACATGGACTTTATCAATCCAGGATCACAAGCAGAGGAAGGAACATTCCTTGGTATCGAGGCTGCACTTGCAGGTTCACAGCCAGGCTNCCCTGGGGGTCCACTGTTTAATCCACTAGGACTGGCCAAGGATATAGAGAATGCAGATGAAGCGAAACTGAAAGAAATCAAGAATGGGAGGTTGGCTATGGTTGCTATGCTTGGGTTTATTGTGCAAGCATCTGTGACTCATGTTGGACCAATCGACAATCTTTTGACACATCTTTCAGACCCGTTCAACAAAAATATCATCCACACCCTCTCCTCTTCTTGAAAATATCCTGGACCGTCAAACTTTTTGTTCCTTTCTTCATCTTAATTAATCTATCAATCAACACATTCACAATGTTCGTGGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13316#0 GAGTAGAAAACAACAGCCAAGAAGGCCCCTTGCAGCGGCGGCAACACTGAAGCAACCAAA 60 consensus_13316#1 ------------------------------------------------------------ consensus_13316#0 ATCTTACAGCGGCGGCAGCCATGGCGTCGTTAGGAGCTAACAGCCATGGCCGAGTCCTGC 120 consensus_13316#1 ------------------------------------------------------------ consensus_13316#0 ACACCTGCACACTCTCCCCAAAGCCGGTTACAGCTTTGAGCAGAAGCATGGCGGCCATTC 180 consensus_13316#1 ------------------------------------------------------------ consensus_13316#0 CTGGACACCATGTTTTTCAGTCTCCACGAGCTCGGATTGCAGTGCGAGCTAGCACCGAGC 240 consensus_13316#1 ------------------------------------------------------------ consensus_13316#0 GTGCGACCTGGCTGCCTGGGCTCGATCCACCTCCTCACCTCGACGGCACATTACCTGGCG 300 consensus_13316#1 ------------------------------------------------------------ consensus_13316#0 ATTTCGGATTTGATCCCCTGGGTCTCGGGGAGGAACCGGCAAACTTGAAATGGTATGTTC 360 consensus_13316#1 ------------------------------------------------------------ consensus_13316#0 AAGCCGAACTTGTGCACTGCCGGTTTGCGATGGCAGGGGTTGCTGGCATCCTTGCGACTG 420 consensus_13316#1 ------------------------------------------------------------ consensus_13316#0 ATTTGATACGTGTATCAGGAATCAACAACCTGCCAGTGTGGTTTGAAGCAGGTGCAACAA 480 consensus_13316#1 ------------------------------TNCCAGTGTGGTTTGAAGCAGGTGCAACAA 30 * **************************** consensus_13316#0 AATTCGACTTCGCTAACACCACGGCACTCTTCTTTGTCCAGCTTCTCTTGATGGGATTTG 540 consensus_13316#1 AATTCGA-TTCGCTAACACCACGGCACTCTTCTTTGTCCAGCTTCTCTTGATGGGATTTG 89 ******* **************************************************** consensus_13316#0 CTGAAACCAAGAGGTACATGGACTTTATCAATCCAGGATCACAAGCAGAGGAAGGAACAT 600 consensus_13316#1 CTGAAACCAAGAGGTACATGGACTTTATCAATCCAGGATCACAAGCAGAGGAAGGAACAT 149 ************************************************************ consensus_13316#0 TCCTTGGTATCGAGGCTGCACTTGCAGGTTCACAGCCAGGCTACCCTGGGGGTCCACTGT 660 consensus_13316#1 TCCTTGGTATCGAGGCTGCACTTGCAGGTTCACAGCCAGGCTNCCCTGGGGGTCCACTGT 209 ****************************************** ***************** consensus_13316#0 TTAATCCACTAGGACTGGCCAAGGATATAGAGAATGCAGATGAAGCGAAACTGAAAGAAA 720 consensus_13316#1 TTAATCCACTAGGACTGGCCAAGGATATAGAGAATGCAGATGAAGCGAAACTGAAAGAAA 269 ************************************************************ consensus_13316#0 TCAAGAATGGGAGGTTGGCTATGGTTGCTATGCTTGGGTTTATTGTGCAAGCATCTGTGA 780 consensus_13316#1 TCAAGAATGGGAGGTTGGCTATGGTTGCTATGCTTGGGTTTATTGTGCAAGCATCTGTGA 329 ************************************************************ consensus_13316#0 CTCATGTTGGACCAATCGACAATCTTTTGACACATCTTTCAGACCCGTTCAACAAAAATA 840 consensus_13316#1 CTCATGTTGGACCAATCGACAATCTTTTGACACATCTTTCAGACCCGTTCAACAAAAATA 389 ************************************************************ consensus_13316#0 TCATCCACACCCTCTCCTCTTCTTGAAAATATCCTGGACCGTCAAACTTTTTGTTCCTTT 900 consensus_13316#1 TCATCCACACCCTCTCCTCTTCTTGAAAATATCCTGGACCGTCAAACTTTTTGTTCCTTT 449 ************************************************************ consensus_13316#0 CTTCATCTTAATTAATCTATCAATCAACACATTCACAATGTTCGTGGACAACATAAGTAA 960 consensus_13316#1 CTTCATCTTAATTAATCTATCAATCAACACATTCACAATGTTCGTGGACAAAAAAAAAAA 509 *************************************************** * ** ** consensus_13316#0 CTCACTACGCAATTGCCAAGTCCATGTGTTATGAAAATGGAGATTCACCGGATGCATAAC 1020 consensus_13316#1 AAAAAAAAAAAAAAAAAAAAA--------------------------------------- 530 * * ** ** consensus_13316#0 TACATTAATTGTTTATGGAAAAGGAAATTTCCTTCCCTAGCAAAAAAA 1068 consensus_13316#1 ------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||