These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13320#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1461 fasta sequence [CATGGACTCAAGGAGTAGAAAATCACGCGCCGCGCGACACAATCAGTTCACCACCGCAGCCACCCCTAGCTAAATCCCTCGGCGGCGGGGGAGGTGGCGGCGTGCGTGGGCATCTCGGCGGGGGTCGTACGCTCATGTCGGCGCTGGTTTGGCTCTGCGTATTGGTTTTAAGTGGATTTCCTGTGCACAATGTCATCGATTCTTCGATCCATTCAGCTGAGGAACAGTATATGGAGTAGCTTCCCTGTCAGATTTCTTAAGCAACAAGCCGGATTATCAACTGTAGAATTGCTTGATCCTAGAAGCTGTGGGAAACGACATTTCACAACACAAGTACAGGAACATGGGAAGGAAGTTGCGGCGGCAGCAACTATTCTAGTTTTTGATCTTGAGACTACTGGCTATTTCCATAAGGATCATAGAATAGTTGAGTTTGCACTCTGTGATCTTTCTGGAGGAAAGAATAGCACTTTTGAAACTCTTGTTAATCCTGAAAGGACTGTTCCTGACTACGTTGAACATCTCATTAAAATTGGCACTGATCTCGTGTGCAGGCCTGGTATCCCAAGGTTTAGTGATGTAATCCCACTACTATTGGCATTCGTTCGAAGTCGCCAAGCTCCTGGCAAGCCAGTTCTGTGGGTTGCTCATAACGCAAAACAATTTGATGCTCGTTTCCTTGCTCAGGAGTTTGATCGTTGTTCAGCACCACTTCCTGCAGATTGGCTGTTTTTTGACACCCTTCTCTTGGCAAAAAAGATGGTGAAAGCAGAGGGGAAAAAACGTCGTACAAGCTTGGAGGCACTGAGAGAACACTATGGCATCGTCTCGCATGACGATGCGCATAGAGCAATGCGAGATGTTATGATATTGTCTCAGGTTTTCCAGAAAATGACTTTTGATCTAAAACTGACAAATGAAAAACTAATAAACGAGGCCATGAAGCTCCCGTTCCATGTGTTCTGTGATTCTGTCTGCTTGCTTTTTCTATGGACCAGTTTCGAACAGCAGTCTGAACCAGAGAGAGAAGAAATTTAGATGTCTCGGAGGTTTGCACACGATCAACGGATCAAGCCATCAAGGTACATGGGATGATGGGAGGGAAACCTGGTACCCGTACGCCCTCTTGCAGCATGAGAAATGGACCTGCAGGATCAGCTATAGCACATGCATGTTTTGCTCCCAGTTGGTTGCAGCTTCAACACATGGGAAACGGGCGGCTCCACATCCATCTTGCGCTGACCGCGTCCTGCATGTATGGCGCCAGCATCGGCCACGAGGCTTCGATTTCTTCTTCCTGCCCCGCCATGACCCGCACTCCTTCCGATTGCACGCTAGCTTATTTACTCTTTATCGAACTTAACAAAGGTTGATCAAATTTATAGAAAAAAAATTAACATCTAAAATATGAAATTAGTTTTATTAAACTTAAAATTGAATGTAGTTTGATAACATGTTTGT] [+] EMBL CF319623 [CATGGACTCAAGGAGTAGAAAATCACGCGCCGCGCGACACAATCAGTTCACCACCGCAGCCACCCCTAGCTAAATCCCTCGGCGGCGGGGGAGGTGGCGGCGTGCGTGGGCATCTCGGCGGGGGTCGTACGCTCATGTCGGCGCTGGTTTGGCTCTGCGTATTGGTTTTAAGTGGATTTCCTGTGCACAATGTCATCGATTCTTCGATCCATTCAGCTGAGGAACAGTATATGGAGTAGCTTCCCTGTCAGATTTCTTAAGCAACAAGCCGGATTATCAACTGTAGAATTGCTTGATCCTAGAAGCTGTGGGAAACGACATTTCACAACACAAGTACAGGAACATGGGAAGGAAGTTGCGGCGGCAGCAACTATTCTAGTTTTTGATCTTGAGACTACTGGCTATTTCCATAAGGATCATAGAATAGTTGAGTTTGCACTCTGTGATCTTTCTGGAGGAAAGAATAGCACTTTTGAAACTCTTGTTAATCCTGAAAGGACTGTTCCTGACTACGTTGAACATCTCATTAAAATTGGCACTGATCTCGTGTGCAGGCCTGGTATCCCAAGGTTTAGTGATGTAATCCCACTACTATTGGCATTCGTTCGAAGTCG ] [+] EMBL AK110887 [ GCGACACAATCAGTTCACCACCGCAGCCACCCCTAGCTAAATCCCTCGGCGGCGGGGGAGGTGGCGGCGTGCGTGGGCATCTCGGCGGGGGTCGTACGCTCATGTCGGCGCTGGTTTGGCTCTGCGTATTGGTTTTAAGTGGATTTCCTGTGCACAATGTCATCGATTCTTCGATCCATTCAGCTGAGGAACAGTATATGGAGTAGCTTCCCTGTCAGATTTCTTAAGCAACAAGCCGGATTATCAACTGTAGAATTGCTTGATCCTAGAAGCTGTGGGAAACGACATTTCACAACACAAGTACAGGAACATGGGAAGGAAGTTGCGGCGGCAGCAACTATTCTAGTTTTTGATCTTGAGACTACTGGCTATTTCCATAAGGATCATAGAATAGTTGAGTTTGCACTCTGTGATCTTTCTGGAGGAAAGAATAGCACTTTTGAAACTCTTGTTAATCCTGAAAGGACTGTTCCTGACTACGTTGAACATCTCATTAAAATTGGCACTGATCTCGTGTGCAGGCCTGGTATCCCAAGGTTTAGTGATGTAATCCCACTACTATTGGCATTCGTTCGAAGTCGCCAAGCTCCTGGCAAGCCAGTTCTGTGGGTTGCTCATAACGCAAAACAATTTGATGCTCGTTTCCTTGCTCAGGAGTTTGATCGTTGTTCAGCACCACTTCCTGCAGATTGGCTGTTTTTTGACACCCTTCTCTTGGCAAAAAAGATGGTGAAAGCAGAGGGGAAAAAACGTCGTACAAGCTTGGAGGCACTGAGAGAACACTATGGCATCGTCTCGCATGACGATGCGCATAGAGCAATGCGAGATGTTATGATATTGTCTCAGGTTTTCCAGAAAATGACTTTTGATCTAAAACTGACAAATGAAAAACTAATAAACGAGGCCATGAAGCTCCCGTTCCATGTGTTCTGTGATTCTGTCTGCTTGCTTTTTCTATGGACCAGTTTCGAACAGCAGTCTGAACCAGAGAGAGAAGAAATTTAGATGTCTCGGAGGTTTGCACACGATCAACGGATCAAGCCATCAAGGTACATGGGATGATGGGAGGGAAACCTGGTACCCGTACGCCCTCTTGCAGCATGAGAAATGGACCTGCAGGATCAGCTATAGCACATGCATGTTTTGCTCCCAGTTGGTTGCAGCTTCAACACATGGGAAACGGGCGGCTCCACATCCATCTTGCGCTGACCGCGTCCTGCATGTATGGCGCCAGCATCGGCCACGAGGCTTCGATTTCTTCTTCCTGCCCCGCCATGACCCGCACTCCTTCCGATTGCACGCTAGCTTATTTACTCTTTATCGAACTTAACAAAGGTTGATCAAATTTATAGAAAAAAAATTAACATCTAAAATATGAAATTAGTTTTATTAAACTTAAAATTGAATGTAGTTTGATAACATGTTTGT] consensusID : consensus_13320#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1356 fasta sequence [CGCGACACAATCAGTTCACCACCGCAGCCACCCCTAGCTAAATCCCTCGGCGGCGGGGGAGGTGGCGGCGTGCGTGGGCATCTCGGCGGGGGTCGTACGCTCATGTCGGCGCTGGTTTGGCTCTGCGTATTGGTTTTAAGTGGATTTCCTGTGCACAATGTCATCGATTCTTCGATCCATTCAGCTGAGGAACAGTATATGGAGTAGCTTCCCTGTCAGATTTCTTAAGCAACAAGCCGGATTATCAACTGTAGAATTGCTTGATCCTAGAAGCTGTGGGAAACGACATTTCACAACACAAGTACAGGAACATGGGAAGGAAGTTGCGGCGGCAGCAACTATTCTAGTTTTTGATCTTGAGACTACTGGCTATTTCCATAAGGATCATAGAATAGTTGAGTTTGCACTCTGTGATCTTTCTGGAGGAAAGAATAGCACTTTTGAAACTCTTGTTAATCCTGAAAGGACTGTTCCTGACTACGTTGAACATCTCATTAAAATTGGCACTGATCTCGTGTGCAGGCCTGGTATCCCAAGGTTTAGTGATGTAATCCCACTACTATTGGCATTCGTTCGAAGTCGCCAAGCTCCTGGCAAGCCAGTTCTGTGGGTTGCTCATAACGCAAAACAATTTGATGCTCGTTTCCTTGCTCAGGAGTTTGATCGTTGTTCAGCACCACTTCCTGCAGATTGGCTGTTTTTTGACACCCTTCTCTTGGCAAAAAAGATGGTGAAAGCAGAGGGAAAAAAACGTCGTACAAGCTTGGAGGCACTGAGAGAACACTATGGCATCGTCTCGCATGACGATGCGCATAGAGCAATGCGAGATGTTATGATATTGTCTCAGGTTTTCCAGAAAATGACTTTTGATCTAAAACTGACAAATGAAGAACTAATAAACGAGGCCATGAAGGCAAGTGAATTCAGCAAGATTTCTTAATTTTTAAAACTCCAGCTTTTTTTAGTGCTTAAACTTATTTAACCTTCTGTGCACATGCTGGATATTTTTCTAGCTGGTGTCATCTCGGCATTAAAGAACTATGCCTTTTTTACTATTGAAATAGTACCTGTATTTTTCAATAAAAACCTGCAATTTGGACCGAACAAGTTGATATCTTCATTGCTACCAGGATGATAAAACCATGGCTGAACCATTTGCATTGGATGACCATCACATCTATTTGATATGCTTCGGTGCTGGATTCAGTGTGGAATGATATTTCTTTGATTTGTCTTGCTTTATCTATGAGCTGTCAGCTATTGAAAAGTATTATTAGTGCTTTTTATTCTTGGGTAGCATATGCCATTTAAATTATTTGAACTTGTGAGATCAATACATCCTGGTGGAAGTTAGTT] [+] EMBL AK100249 [CGCGACACAATCAGTTCACCACCGCAGCCACCCCTAGCTAAATCCCTCGGCGGCGGGGGAGGTGGCGGCGTGCGTGGGCATCTCGGCGGGGGTCGTACGCTCATGTCGGCGCTGGTTTGGCTCTGCGTATTGGTTTTAAGTGGATTTCCTGTGCACAATGTCATCGATTCTTCGATCCATTCAGCTGAGGAACAGTATATGGAGTAGCTTCCCTGTCAGATTTCTTAAGCAACAAGCCGGATTATCAACTGTAGAATTGCTTGATCCTAGAAGCTGTGGGAAACGACATTTCACAACACAAGTACAGGAACATGGGAAGGAAGTTGCGGCGGCAGCAACTATTCTAGTTTTTGATCTTGAGACTACTGGCTATTTCCATAAGGATCATAGAATAGTTGAGTTTGCACTCTGTGATCTTTCTGGAGGAAAGAATAGCACTTTTGAAACTCTTGTTAATCCTGAAAGGACTGTTCCTGACTACGTTGAACATCTCATTAAAATTGGCACTGATCTCGTGTGCAGGCCTGGTATCCCAAGGTTTAGTGATGTAATCCCACTACTATTGGCATTCGTTCGAAGTCGCCAAGCTCCTGGCAAGCCAGTTCTGTGGGTTGCTCATAACGCAAAACAATTTGATGCTCGTTTCCTTGCTCAGGAGTTTGATCGTTGTTCAGCACCACTTCCTGCAGATTGGCTGTTTTTTGACACCCTTCTCTTGGCAAAAAAGATGGTGAAAGCAGAGGGAAAAAAACGTCGTACAAGCTTGGAGGCACTGAGAGAACACTATGGCATCGTCTCGCATGACGATGCGCATAGAGCAATGCGAGATGTTATGATATTGTCTCAGGTTTTCCAGAAAATGACTTTTGATCTAAAACTGACAAATGAAGAACTAATAAACGAGGCCATGAAGGCAAGTGAATTCAGCAAGATTTCTTAATTTTTAAAACTCCAGCTTTTTTTAGTGCTTAAACTTATTTAACCTTCTGTGCACATGCTGGATATTTTTCTAGCTGGTGTCATCTCGGCATTAAAGAACTATGCCTTTTTTACTATTGAAATAGTACCTGTATTTTTCAATAAAAACCTGCAATTTGGACCGAACAAGTTGATATCTTCATTGCTACCAGGATGATAAAACCATGGCTGAACCATTTGCATTGGATGACCATCACATCTATTTGATATGCTTCGGTGCTGGATTCAGTGTGGAATGATATTTCTTTGATTTGTCTTGCTTTATCTATGAGCTGTCAGCTATTGAAAAGTATTATTAGTGCTTTTTATTCTTGGGTAGCATATGCCATTTAAATTATTTGAACTTGTGAGATCAATACATCCTGGTGGAAGTTAGTT] [+] EMBL AU068096 [ AATCAGTTCACCACCGCAGCCACCCCTAGCTAAATCCCTCGGCGGCGGGGGAGGTGGCGGCGTGCGTGGGCATCTCGGCGGGGGTCGTACGCTCATGTCGGCGCTGGTTTGGCTCTGCGTATTGGTTTTAAGTGGATTTCCTGTGCACAATGTCATCGATTCTTCGATCCATTCAGCTGAGGAACAGTATATGGAGTAGCTTCCCTGTCAGATTTCTTAAGCAACAAGCCGGATTATCAACTGTAGAATTGCTTGATCCTAGAAGCTGTGGGAAACGACATTTCACAACACAAGTACAGGAACATGGGAAGGAAGTTGCGGCGGCAGCAACTATTCTAGTTTTTGATCTTGAGACTACTGGCTATTTCC ] [+] EMBL C27066 [ GGAGGTGGCGGCGTGCNTGGGCATCTCGGCGGGGGTCGTACGCTCATGTCGGCGCTGGTTTGGCTCTGCNTATTGGTTTTAAGTGGATTTCCTGTGCACAATGTCATCGATTCTNCGATCCATTCAGCTGAGGAACAGTATATGGAGTAGCTTCCCTGTNANATTTNTTAAGCAACAAGCCGGATTATCAACTGTAGAATTGCTTGATCCTAGAAGCTGTGGGAAACGACATTTCACAACACAAGTACAG ] [+] EMBL OSR08793A [ GGAGGCACTGAGAGAACACTATGGCATCGTCTCGCATGACGATGCGCATAGAGCAATGCGAGATGTTATGATATTGTCTCAGGTTTTCCAGAAAATGACTTTTGATCTAAAACTGACAAATGAAGAACTAATAAACGAGGCCATGAAGGCAAGTGAATTCAGCAAGATTTCTTAATTTTTAAAACTCCAGCTTTTTTTAGTGCTTAAACTTATTTAACCTTCTGTGCACATGCTGGATATTTTTCTAGCTGGTGTCATCTC ] consensusID : consensus_13320#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 832 fasta sequence [AGGGGGGGAAAGAAGTTGCGGCGGCAGCAACTATTCTAGTTTTTGATCTTGAGACTACTGGCTATTTCCATAAAGATCATAGAATAGTTGAGTTTGCACTCTGTGATCTTTCTGGAGGAAAGAATAGCAC-TTTTGAAACTCTT-GTTAATCCTGAAAGGACTGTT-CCTGACTACGTTGAACATCTCATTAAAATTGGCACTGATCTCGTGTGCAGGCCTGGTATCCCAAGGTTTAGTGATGTAATCCCACTACTATTGGCATTCGTTCGAAGTCGCCAAGCTCCTGGCAAGCCAGTTCTGTGGGTTGCTCATAACGCAAAACAATTTGATGCTCGTTTCCTTGCTCAGGAGTTTGATCGTTGTTCAGCACCACTTCCTGCAGATTGGCTGTTTTTTGACACCCTTCTCTTGGCAAAAAAGATGGTGAAAGCAGAGGGGAAAAAACGTCGTACAAGCTTGGAGGCACTGAGAGAACACTATGGCATCGTCTCGCATGACGATGCGCATAGAGCAATGCGAGATGTTATGATATTGTCTCAGGTTTTCCAGAAAATGACTTTTGATCTAAAACTGACAAATGAAGAACTAATAAACGAGGCCATGAAGGCAAGTGAATTCAGCAAGATTTCTTAATTTTTAAAACTCCAGCTTTTTTTAGTGCTTAAACTTATTTAACCTTCTGTGCACATGCTGGATA-TTTTTCTAGCTGGTGTCATCTCGGCATTAAAGAACTATGCCTTTTTTTACTATTGAAATAGTA-CCTGTATTTTTCAATAAAAACCTGCAATTT-GGACCGAACAAAAAAAAAAAAAAAAAAACACTGTCCATGCCGT] [+] EMBL CA766808 [AGGGGGGGAAAGAAGTTGCGGCGGCAGCAACTATTCTAGTTTTTGATCTTGAGACTACTGGCTATTTCCATAAAGATCATAGAATAGTTGAGTTTGCACTCTGTGATCTTTCTGGAGGAAAGAATAGCAC TTTTGAAACTCTT GTTAATCCTGAAAGGACTGTT CCTGACTACGTTGAACATCTCATTAAAATTGGCACTGATCTCGTGTGCAGGCCTGGTATCCCAAGGTTTAGTGATGTAATCCCACTACTATTGGCATTCGTTCGAAGTCGCCAAGCTCCTGGCAAGCCAGTTCTGTGGGTTGCTCATAACGCAAAACAATTTGATGCTCGTTTCCTTGCTCAGGAGTTTGATCGTTGTTCAGCACCACTTCCTGCAGACTGGCTGTTTTTTGACACCCTTCTCTTGGCAAAAAAGATGGTGAAAGCAGAGGGGAAAAAACGTCGTACAAGCTTGGAGGCACTGAGAGAACACTATGGCATCGTCTCGCATGACGATGCGCATAGAGCAATGCGAGATGTTATGATATTGTCTCAGGTTTTCCAGAAAATGACTTTTGATCTAAAACTGACAAATGAAGAACTAATAAACGAGGCCATGAANGCAAGTGAATTCAGCAAGATTTCTTAATTTTTAAAACTCCAGCTTTTTTTAGTGCTTAAACTTATTTAACCTTCTGTGCACATGCTGGATATTTTTTCTAGCTGGNGTCATCTCGGCATTAAAGAACTATGNCCTTTTTTACTATTGGAAAAGTACCCTGNATTTTTTAATAAAAACCTGCAATTTNGGACCGAACAAgntgat ] [+] EMBL CF327643 [ ggactGAAGGAGTAGAA ATGAAACTCTT GTTATTCCTGAAA GACTGTT CCTGACTACGTTGAACATCTCATTAAAATTGGCACTGATCTCGTGTGCAGGCCTGGTATCCCAAGGTTTAGTGATGTAATCCCACTACTATTGGCATTCGTTCGAAGTCGCCAAGCTCCTGGCAAGCCAGTTCTGTGGGTTGCTCATAACGCAAAACAATTTGATGCTCGTTTCCTTGCTCAAGAGTTTGATCGTTGTTCAACACCACTTCCTGCAGATTGGCTGTTTTTTGACACCCTTCTCTTGGCAAAAAAGATGGTGAAAGCAGAGGGGAAAAAACGTCGTACAAGCTTGGAGGCACTGAGAGAACACTATGGCATCGTCTCGCATGACGATGCGCATAGAGCAATGCGAGATGTTATGATATTGTCTCAGGTTTTCCAGAAAATGACTTTTGATCTAAAACTGACAAATGAAGAACTAATAAACGAGGCCATGAAGGCAAGTGAATTCAGCAAGATTTCTTAATTTTTAAAACTCCAGCTTTTTTTAGTGCTTAAACTTATTTAACCTTCTGTGCACATGCTGGATA TTTTTCTAGCTGGTGTCATCTCGGCATTAAAGAACTATGCCTTTTTTTACTATTGAAATAGTA CCTGTATTTTTCAATAAAAACCTGCAATTT GGACCGAAAAAAAAAAAAAAAAAAA ] [+] EMBL AU068097 [ TACCACTTTTTGAAACTCTTGGTTAATCCTGAAAGGACTGTTCCCTGACTACGTTGAACATCTCATTAAAATTGGCACTGATCTCGTGTGCAGGCCTGGTATCCCAAGGTTTAGTGATGTAATCCCACTACTATTGGCATTCGTTCGAAGTCGCCAAGCTCCTGGCAAGCCAGTTCTGTGGGTTGCTCATAACGCAAAACAATTTGATGCTCGTTTCCTTGCTCAGGAGTTTGATCGTTGTTCAGCACCACTTCCTGCAGATTGGCTGTTTTTTGACACCCTTCTCTTGGCAAAAAAGATGGTGAAAGCAGAGGGGAAAAAACGTCGTACAAGCTTGGAGGCACTGAGAGAACACTATGGCATCGTCTCGCATGACGATGCGCATAGAGCAATGCGAGATGTTATGATATTGTCTCAGGTTTTCCAGAAAATGACTTTTGATCTAAAACTGACAAATGAAGAACTAATAAACGAGGCCATGAAGGCAAGTGAATTCAGCAAGATTTCTTAATTTTTAAAACTCCAGCTTTTTTTAGTGCTTAAACTTATTTAACCTTCTGTGCACATGCTGGATA TTTTTCTAGCTGGTGTCATCTCGGCATTAAAGAACTATGCC TTTTTTACTATTGAAATAGTA CCTGTATTTTTCAATAAAAACCTGCAATTT GGACCGAACAAAAAAAAAAAAAAA ] [-] EMBL CF319622 [ CCTGGTATCCCAAGGTTTAGTGATGTAATCCCACTACTATT GCATTCGTTCGAAGTCGCCAAGCTCCTGGCAAGCCAGTTCTGTGGGTTGCTCATAACGCAAAACAATTTGATGCTCGTTTCCTTGCTCAGGAGTTTGATCGTTGTTCAGCACCACTTCCTGCAGATTGGCTGTTTTTTGACACCCTTCTCTTGGCAAAAAAGATGGTGAAAGCAGAGGGGAAAAAACGTCGTACAAGCTTGGAGGCACTGAGAGAACACTATGGCATCGTCTCGCATGACGATGCGCATAGAGCAATGCGAGATGTTATGATATTGTCTCAGGTTTTCCAGAAAATGACTTTTGATCTAAAACTGACAAATGAAGAACTAATAAACGAGGCCATGAAGGCAAGTGAATTCAGCAAGATTTCTTAATTTTTAAAACTCCAGCTTTTTTTAGTGCTTAAACTTATTTAACCTTCTGTGCACATGCTGGATA TTTTTCTAGCTGGTGTCATCTCGGCATTAAAGAACTATGCC TTTTTTACTATTGAAATAGTA CCTGTATTTTTCAATAAAAACCTGCAATTT GGACCGAACAAAAAAAAAAAAAAAAAAACACTGTCCATGCCGT] [-] EMBL CF327644 [ TTTAGTGATGTAATCCCACTACTATTGGCATTCGTTCGAAGTCGCCAAGCTCCTGGCAAGCCAGTTCTGTGGGTTGCTCATAACGCAAAACAATTTGATGCTCGTTTCCTTGCTCAGGAGTTTGATCGTTGTTCAGCACCACTTCCTGCAGATTGGCTGTTTTTTGACACCCTTCTCTTGGCAAAAAAGATGGTGAAAGCAGAGGGGAAAAAACGTCGTACAAGCTTGGAGGCACTGAGAGAACACTATGGCATCGTCTCGCATGACGATGCGCATAGAGCAATGCGAGATGTTATGATATTGTCTCAGGTTTTCCAGAAAATGACTTTTGATCTAAAACTGACAAATGAAGAACTAATAAACGAGGCCATGAAGGCAAGTGAATTCAGCAAGATTTCTTAATTTTTAAAACTCCAGCTTTTTTTAGTGCTTAAACTTATTTAACCTTCTGTGCACATGCTGGATA TTTTTCTAGCTGGTGTCATCTCGGCATTAAAGAACTATGCCTTTTTTTACTATTGAAATAGTA CCTGTATTTTTCAATAAAAACCTGCAATTT GGACCGAAAAAAA ] consensusID : consensus_13320#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 330 fasta sequence [ANATGTTATGATATTGTNTCAGGTTTTCCANAAAATGACTTTTGNTNTAAAACTGCCAAATGAAGAACTAATAAACGAGGCCATGAAGGCAAGTGAATTCAGCAAGATTTTTTAATTTTTAAAACNCCAGCTTTTTTTAGNGCTTAAACTTATTTAACCTTCTGNGCNCATGCTGGANATTTTTCTAGCNGGNGTCATCTCGGCATTAAANAACTATGCCTTTTTTACTATTGAAANAGNACCTGTATTTTTCAATAAAAACCTGCAATTTGGNCCGAACAAGTTGATATNTTCATTGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU181626 [ANATGTTATGATATTGTNTCAGGTTTTCCANAAAATGACTTTTGNTNTAAAACTGCCAAATGAAGAACTAATAAACGAGGCCATGAAGGCAAGTGAATTCAGCAAGATTTTTTAATTTTTAAAACNCCAGCTTTTTTTAGNGCTTAAACTTATTTAACCTTCTGNGCNCATGCTGGANATTTTTCTAGCNGGNGTCATCTCGGCATTAAANAACTATGCCTTTTTTACTATTGAAANAGNACCTGTATTTTTCAATAAAAACCTGCAATTTGGNCCGAACAAGTTGATATNTTCATTGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13320#1 --------------------------------CGCGACACAATCAGTTCACCACCGCAGC 28 consensus_13320#3 ------------------------------------------------------------ consensus_13320#2 ------------------------------------------------------------ consensus_13320#0 CATGGACTCAAGGAGTAGAAAATCACGCGCCGCGCGACACAATCAGTTCACCACCGCAGC 60 consensus_13320#1 CACCCCTAGCTAAATCCCTCGGCGGCGGGGGAGGTGGCGGCGTGCGTGGGCATCTCGGCG 88 consensus_13320#3 ------------------------------------------------------------ consensus_13320#2 ------------------------------------------------------------ consensus_13320#0 CACCCCTAGCTAAATCCCTCGGCGGCGGGGGAGGTGGCGGCGTGCGTGGGCATCTCGGCG 120 consensus_13320#1 GGGGTCGTACGCTCATGTCGGCGCTGGTTTGGCTCTGCGTATTGGTTTTAAGTGGATTTC 148 consensus_13320#3 ------------------------------------------------------------ consensus_13320#2 ------------------------------------------------------------ consensus_13320#0 GGGGTCGTACGCTCATGTCGGCGCTGGTTTGGCTCTGCGTATTGGTTTTAAGTGGATTTC 180 consensus_13320#1 CTGTGCACAATGTCATCGATTCTTCGATCCATTCAGCTGAGGAACAGTATATGGAGTAGC 208 consensus_13320#3 ------------------------------------------------------------ consensus_13320#2 ------------------------------------------------------------ consensus_13320#0 CTGTGCACAATGTCATCGATTCTTCGATCCATTCAGCTGAGGAACAGTATATGGAGTAGC 240 consensus_13320#1 TTCCCTGTCAGATTTCTTAAGCAACAAGCCGGATTATCAACTGTAGAATTGCTTGATCCT 268 consensus_13320#3 ------------------------------------------------------------ consensus_13320#2 ------------------------------------------------------------ consensus_13320#0 TTCCCTGTCAGATTTCTTAAGCAACAAGCCGGATTATCAACTGTAGAATTGCTTGATCCT 300 consensus_13320#1 AGAAGCTGTGGGAAACGACATTTCACAACACAAGTACAGGAACATGGGAAGGAAGTTGCG 328 consensus_13320#3 ------------------------------------------------------------ consensus_13320#2 ----------------------------------------AGGGGGGGAAAGAAGTTGCG 20 consensus_13320#0 AGAAGCTGTGGGAAACGACATTTCACAACACAAGTACAGGAACATGGGAAGGAAGTTGCG 360 consensus_13320#1 GCGGCAGCAACTATTCTAGTTTTTGATCTTGAGACTACTGGCTATTTCCATAAGGATCAT 388 consensus_13320#3 ------------------------------------------------------------ consensus_13320#2 GCGGCAGCAACTATTCTAGTTTTTGATCTTGAGACTACTGGCTATTTCCATAAAGATCAT 80 consensus_13320#0 GCGGCAGCAACTATTCTAGTTTTTGATCTTGAGACTACTGGCTATTTCCATAAGGATCAT 420 consensus_13320#1 AGAATAGTTGAGTTTGCACTCTGTGATCTTTCTGGAGGAAAGAATAGCACTTTTGAAACT 448 consensus_13320#3 ------------------------------------------------------------ consensus_13320#2 AGAATAGTTGAGTTTGCACTCTGTGATCTTTCTGGAGGAAAGAATAGCACTTTTGAAACT 140 consensus_13320#0 AGAATAGTTGAGTTTGCACTCTGTGATCTTTCTGGAGGAAAGAATAGCACTTTTGAAACT 480 consensus_13320#1 CTTGTTAATCCTGAAAGGACTGTTCCTGACTACGTTGAACATCTCATTAAAATTGGCACT 508 consensus_13320#3 ------------------------------------------------------------ consensus_13320#2 CTTGTTAATCCTGAAAGGACTGTTCCTGACTACGTTGAACATCTCATTAAAATTGGCACT 200 consensus_13320#0 CTTGTTAATCCTGAAAGGACTGTTCCTGACTACGTTGAACATCTCATTAAAATTGGCACT 540 consensus_13320#1 GATCTCGTGTGCAGGCCTGGTATCCCAAGGTTTAGTGATGTAATCCCACTACTATTGGCA 568 consensus_13320#3 ------------------------------------------------------------ consensus_13320#2 GATCTCGTGTGCAGGCCTGGTATCCCAAGGTTTAGTGATGTAATCCCACTACTATTGGCA 260 consensus_13320#0 GATCTCGTGTGCAGGCCTGGTATCCCAAGGTTTAGTGATGTAATCCCACTACTATTGGCA 600 consensus_13320#1 TTCGTTCGAAGTCGCCAAGCTCCTGGCAAGCCAGTTCTGTGGGTTGCTCATAACGCAAAA 628 consensus_13320#3 ------------------------------------------------------------ consensus_13320#2 TTCGTTCGAAGTCGCCAAGCTCCTGGCAAGCCAGTTCTGTGGGTTGCTCATAACGCAAAA 320 consensus_13320#0 TTCGTTCGAAGTCGCCAAGCTCCTGGCAAGCCAGTTCTGTGGGTTGCTCATAACGCAAAA 660 consensus_13320#1 CAATTTGATGCTCGTTTCCTTGCTCAGGAGTTTGATCGTTGTTCAGCACCACTTCCTGCA 688 consensus_13320#3 ------------------------------------------------------------ consensus_13320#2 CAATTTGATGCTCGTTTCCTTGCTCAGGAGTTTGATCGTTGTTCAGCACCACTTCCTGCA 380 consensus_13320#0 CAATTTGATGCTCGTTTCCTTGCTCAGGAGTTTGATCGTTGTTCAGCACCACTTCCTGCA 720 consensus_13320#1 GATTGGCTGTTTTTTGACACCCTTCTCTTGGCAAAAAAGATGGTGAAAGCAGAGGGAAAA 748 consensus_13320#3 ------------------------------------------------------------ consensus_13320#2 GATTGGCTGTTTTTTGACACCCTTCTCTTGGCAAAAAAGATGGTGAAAGCAGAGGGGAAA 440 consensus_13320#0 GATTGGCTGTTTTTTGACACCCTTCTCTTGGCAAAAAAGATGGTGAAAGCAGAGGGGAAA 780 consensus_13320#1 AAACGTCGTACAAGCTTGGAGGCACTGAGAGAACACTATGGCATCGTCTCGCATGACGAT 808 consensus_13320#3 ------------------------------------------------------------ consensus_13320#2 AAACGTCGTACAAGCTTGGAGGCACTGAGAGAACACTATGGCATCGTCTCGCATGACGAT 500 consensus_13320#0 AAACGTCGTACAAGCTTGGAGGCACTGAGAGAACACTATGGCATCGTCTCGCATGACGAT 840 consensus_13320#1 GCGCATAGAGCAATGCGAGATGTTATGATATTGTCTCAGGTTTTCCAGAAAATGACTTTT 868 consensus_13320#3 -----------------ANATGTTATGATATTGTNTCAGGTTTTCCANAAAATGACTTTT 43 consensus_13320#2 GCGCATAGAGCAATGCGAGATGTTATGATATTGTCTCAGGTTTTCCAGAAAATGACTTTT 560 consensus_13320#0 GCGCATAGAGCAATGCGAGATGTTATGATATTGTCTCAGGTTTTCCAGAAAATGACTTTT 900 * *************** ************ ************ consensus_13320#1 GATCTAAAACTGACAAATGAAGAACTAATAAACGAGGCCATGAAGGCAAGTGAATTCAGC 928 consensus_13320#3 GNTNTAAAACTGCCAAATGAAGAACTAATAAACGAGGCCATGAAGGCAAGTGAATTCAGC 103 consensus_13320#2 GATCTAAAACTGACAAATGAAGAACTAATAAACGAGGCCATGAAGGCAAGTGAATTCAGC 620 consensus_13320#0 GATCTAAAACTGACAAATGAAAAACTAATAAACGAGGCCATGAAGCT---CCCGTTCCAT 957 * * ******** ******** *********************** *** consensus_13320#1 AAGATTTCTTAATTTTTAAAACTCCAGCTTTTTTTAGTGCTTAAACTTATTTAACCTTCT 988 consensus_13320#3 AAGATTTTTTAATTTTTAAAACNCCAGCTTTTTTTAGNGCTTAAACTTATTTAACCTTCT 163 consensus_13320#2 AAGATTTCTTAATTTTTAAAACTCCAGCTTTTTTTAGTGCTTAAACTTATTTAACCTTCT 680 consensus_13320#0 GTG-TTCTGTGATTCT--GTCTGCTTGCTTTTTCTATGGACCAGTTTCGAACAGCAGTCT 1014 * ** * *** * * ******* ** * * * * * *** consensus_13320#1 GTGC---ACATGCTGGATATTTT--TCTAGCTGGTGTCATCTCGGCATTAAAGAACTATG 1043 consensus_13320#3 GNGC---NCATGCTGGANATTTT--TCTAGCNGGNGTCATCTCGGCATTAAANAACTATG 218 consensus_13320#2 GTGC---ACATGCTGGATATTTT--TCTAGCTGGTGTCATCTCGGCATTAAAGAACTATG 735 consensus_13320#0 GAACCAGAGAGAGAAGAAATTTAGATGTCTCGGAGGTTTGCACACGATCAACGGATCAAG 1074 * * * ** **** * * * * ** * * ** ** * * * consensus_13320#1 CCTTT--------TTT-ACTATTGAAA-------TAGTACCTGTA-----TTTTTCAATA 1082 consensus_13320#3 CCTTT--------TTT-ACTATTGAAA-------NAGNACCTGTA-----TTTTTCAATA 257 consensus_13320#2 CCTTT--------TTTTACTATTGAAA-------TAGTACCTGTA-----TTTTTCAATA 775 consensus_13320#0 CCATCAAGGTACATGGGATGATGGGAGGGAAACCTGGTACCCGTACGCCCTCTTGCAGCA 1134 ** * * * ** * * * *** *** * ** ** * consensus_13320#1 AAA-------ACCTGCAATTTGGACCG-AACAAGTTGATATCTTCATTGCTACCAGGATG 1134 consensus_13320#3 AAA-------ACCTGCAATTTGGNCCG-AACAAGTTGATATNTTCATTGCTAAAAAAAAA 309 consensus_13320#2 AAA-------ACCTGCAATTTGGACCG-AACAAA-----------------AAAAAAAAA 810 consensus_13320#0 TGAGAAATGGACCTGCAGGATCAGCTATAGCACATGCATGTTTTGCTCCCAGTTGGTTGC 1194 * ******* * * * ** consensus_13320#1 ATAAAACCATGGCTGAACCATTTGCATTGGATGACCATCACATCTATTTGATATGCTTCG 1194 consensus_13320#3 AAAAAAAAAAAAAAAAAAAAA--------------------------------------- 330 consensus_13320#2 AAAAAAACACTGTCCATGCCGT-------------------------------------- 832 consensus_13320#0 AGCTTCAACACATGGGAAACGGGCGGCTCCACATCCATCTTGCGCTGACCGCGTCCTGCA 1254 * consensus_13320#1 GTGCTGGATTCAGTGTGGAATGATATTTCTTTGATTTGTCTTGCTTTATCTATGAGCTGT 1254 consensus_13320#3 ------------------------------------------------------------ consensus_13320#2 ------------------------------------------------------------ consensus_13320#0 TGTATGGCGCCAGCATCGGCCACGAGGCTTCGATTTCTTCTTCCTGCCCCGCCATGACCC 1314 consensus_13320#1 CAGCTATTGAAAAGTATTATTAGTGCTTTTTATTCTTGGGTAGCATATGCCATTTAAATT 1314 consensus_13320#3 ------------------------------------------------------------ consensus_13320#2 ------------------------------------------------------------ consensus_13320#0 GCACTCCTTCCGATTGCACGCTAGCTTATTTACTCTTTATCGAACTTAACAAAGGTTGAT 1374 consensus_13320#1 ATTTGAACTTGTGAGATCAATACATCCTGGTGGAAGTTAGTT------------------ 1356 consensus_13320#3 ------------------------------------------------------------ consensus_13320#2 ------------------------------------------------------------ consensus_13320#0 CAAATTTATAGAAAAAAAATTAACATCTAAAATATGAAATTAGTTTTATTAAACTTAAAA 1434 consensus_13320#1 --------------------------- consensus_13320#3 --------------------------- consensus_13320#2 --------------------------- consensus_13320#0 TTGAATGTAGTTTGATAACATGTTTGT 1461 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||