cluster # 13322

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Oryza sativa
cluster # 13322 cluster # 13322 Sequences # 12 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_13322#0 length = 1868 sequences # 11

consensus_13322#1 length = 493 sequences # 1

consensusID : consensus_13322#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 11
consensus length = 1868
fasta sequence

                              [CTCTCTTTCAGCCTCTGGGTCACACACACATACTCCCCATGGCAGCTGCAGGGGAAGTGGTGATGCTTGGTGGCATTCTCCTCCCTCTCCTCCTGGTTGTCGCCGTCTCCGGTGAGCCGCCGCCGATCAGCCGGAGGAGCTTCCCCGAGGGGTTCATCTTCGGGACGGCCTCGTCGTCGTATCAGTATGAGGGTGGCGCCAGAGAGGGGGGCAGAGGACCAAGCATCTGGGACACATTCACACACCAGCACCCAGATAAGATTGCTGACAAAAGCAATGGGGACGTGGCTGCAGACTCCTACCATCTATACAAGGAAGATGTGCGCATCATGAAGGATATGGGAGTGGATGCATATAGGTTCTCCATCTCATGGACAAGAATTCTTCCAAATGGAAGTCTGAGCGGTGGAATCAACAGAGAAGGCATCAGCTACTACAACAATTTGATCAATGAACTATTACTGAAAGGGGTGCAACCATTTGTTACCCTTTTCCACTGGGACTCGCCACAGGCATTAGAAGATAAATATAATGGATTTCTTAGCCCTAATATCATAAATGACTATAAGGAGTACGCTGAAACCTGCTTCAAAGAGTTTGGTGACAGAGTGAAACATTGGATCACCTTCAATGAGCCTTTGAGCTTCTGTGTTGCGGGATATGCATCAGGTGGCATGTTTGCACCAGGCCGCTGTTCGCCTTGGGAGGGAAATTGCAGTGCTGGCGATTCAGGAAGGGAGCCTTACACCGCATGCCATCATCAACTACTTGCTCATGCGGAAACTGTTCGGTTGTACAAAGAGAAATATCAGGTCTTACAAAAGGGGAAGATTGGAATAACTTTGGTCTCGAACTGGTTTGTTCCCTTCTCCCGCTCCAAATCCAACATCGATGCTGCAAGGCGTGCTTTAGACTTCATGCTTGGATGGTTTATGGATCCCCTAATTAGAGGCGAGTACCCCCTAAGCATGAGAGAATTGGTTCGGAATCGCTTGCCTCAGTTCACTAAAGAACAATCTGAGTTGATCAAGGGTTCATTCGA-TTTTATTGGACTTAATTACTACACTTCAAATTATGCTGGTAGCCTTCCTCCATCAAATGGCCTCAATAACAGCTATAGTACTGATGCTCGAGCTAATCTTACTGCTGTTCGAAACGGCATTCCCATAGGTCCTCAGGCTGCTTCGCCTTGGCTTTACATCTATCCTCAAGGGTTCCGTGAATTGGT-GCTTTATGTTAAGGAAAACTATGGCAATCCTACCATC-TACATCACCGAAAAT-GGTGTTGATGAATTCAACAATAAGACCTTACCACTCCAGGAAGCCTTGAAGGATGACACTAGAATAGATTACTACCACAAGCACCTCCTTTCACTGCTAAGTGCAATAAGGGACGGAGCAAATGTGAAGGGATACTTTGCATGGTCGCTGCTTGATAACTTCGAGTGGTCGAACGGCTATACTGTTCGCTTTGGGATAAACTTTGTGGATTACAATGACGGAGCGAAGAGATACCCCAAAATGTCTGCCCA-TTGGTTCAAGGAGTTCCTCCAGAAATGATGAAAATAAAAGCGTGTGAAGAGTTGCACACATT-GCTCTTCCCAT-TTTGAACAGCAAAGAGCATATATGTTACAACAGATGGAGGTATTGCAAGTTT-GCAACTAAATAAATCTCTGTCTTCACTCTCT-GCGTATAGCTAGCTAAGCGATGGATAGAGAGTTACATCTTCTCTTACGCATATTT-CAAAAAATTTAAGAGGTTGTAGTAACTTCTTCATCATATTTTGGAGATGCGATCATAGCA------CAGTGGCAGAGGTTGCTGGCATGCA-CCGTCCACGCAGGTTCGATTCTCCTTGAGCCCGGCTCACCA]

[+] EMBL CB675342             [CTCTCTTTCAGCCTCTGGGTCACACACACATACTCCCCATGGCAGCTGCAGGGGAAGTGGTGATGCTTGGTGGCATTCTCCTCCCTCTCCTCCTGGTTGTCGCCGTCTCCGGTGAGCCGCCGCCGATCAGCCGGAGGAGCTTCCCCGAGGGGTTCATCTTCGGGACGGCCTCGTCGTCGTATCAGTATGAGGGTGGCGCCAGAGAGGGGGGCAGAGGACCAAGCATCTGGGACACATTCACACACCAGCACCCAGATAAGATTGCTGACAAAAGCAATGGGGACGTGGCTGCAGACTCCTACCATCTATACAAGGAAGATGTGCGCATCATGAAGGATATGGGAGTGGATGCATATAGGTTCTCCATCTCATGGACAAGAATTCTTCCAAATGGAAGTCTGAGCGGTGGAATCAACAGAGAAGGCATCAGCTACTACAACAATTTGATCAATGAACTATTACTGAAAGGGGTGCAACCATTTGTTACCCTTTTCCACTGGGACTCGCCACAGGCATTAGAAGATAAATATAATGGATTTCTTAGCCCTAATATCATAAATGACTATAAGGAGTACGCTGAAACCTGCTTCAAAGAGTTTGGTGACAGAGTGAAACATTGGATCACCTTCAATGAGCCTTTGAGCTTCTGTGTTGCGGGATATGCATCAGGTGGCATGTTTGCACCAGGCCGCTGTTCGCCTTGGGAGGGAAATTGCAGTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AU163237             [                GGGTCACACACACATACTCCCCATGGCAGCTGCAGGGGAAGTGGTGATGCTTGGTGGCATTCTCCTCCCTCTCCTCCTGGTTGTCGCCGTCTCCGGTGAGCCGCCGCCGATCAGCCGGAGGAGCTTCCCCGAGGGGTTCATCTTCGGGACGGCCTCGTCGTCGTATCAGTATGAGGGTGGCGCCAGAAAGGGGGGCAGAGGACCAAGCATCTGGGACACATTCACACACCAGCACCCAGATAAGATTGCTGACAAAAGCAATTGGGACGTTGCTGCAGACTCCTACCATCTATACAAGGAAGATGTGCGCATCATGAAAGATATTGGANTGGATGCATATAAGTTCTCCATCTCATGGAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AK070962             [                       ACACACATACTCCCCATGGCAGCTGCAGGGGAAGTGGTGATGCTTGGTGGCATTCTCCTCCCTCTCCTCCTGGTTGTCGCCGTCTCCGGTGAGCCGCCGCCGATCAGCCGGAGGAGCTTCCCCGAGGGGTTCATCTTCGGGACGGCCTCGTCGTCGTATCAGTATGAGGGTGGCGCCAGAGAGGGGGGCAGAGGACCAAGCATCTGGGACACATTCACACACCAGCACCCAGATAAGATTGCTGACAAAAGCAATGGGGACGTGGCTGCAGACTCCTACCATCTATACAAGGAAGATGTGCGCATCATGAAGGATATGGGAGTGGATGCATATAGGTTCTCCATCTCATGGACAAGAATTCTTCCAAATGGAAGTCTGAGCGGTGGAATCAACAGAGAAGGCATCAGCTACTACAACAATTTGATCAATGAACTATTACTGAAAGGGGTGCAACCATTTGTTACCCTTTTCCACTGGGACTCGCCACAGGCATTAGAAGATAAATATAATGGATTTCTTAGCCCTAATATCATAAATGACTATAAGGAGTACGCTGAAACCTGCTTCAAAGAGTTTGGTGACAGAGTGAAACATTGGATCACCTTCAATGAGCCTTTGAGCTTCTGTGTTGCGGGATATGCATCAGGTGGCATGTTTGCACCAGGCCGCTGTTCGCCTTGGGAGGGAAATTGCAGTGCTGGCGATTCAGGAAGGGAGCCTTACACCGCATGCCATCATCAACTACTTGCTCATGCGGAAACTGTTCGGTTGTACAAAGAGAAATATCAGGTCTTACAAAAGGGGAAGATTGGAATAACTTTGGTCTCGAACTGGTTTGTTCCCTTCTCCCGCTCCAAATCCAACATCGATGCTGCAAGGCGTGCTTTAGACTTCATGCTTGGATGGTTTATGGATCCCCTAATTAGAGGCGAGTACCCCCTAAGCATGAGAGAATTGGTTCGGAATCGCTTGCCTCAGTTCACTAAAGAACAATCTGAGTTGATCAAGGGTTCATTCGA TTTTATTGGACTTAATTACTACACTTCAAATTATGCTGGTAGCCTTCCTCCATCAAATGGCCTCAATAACAGCTATAGTACTGATGCTCGAGCTAATCTTACTGCTGTTCGAAACGGCATTCCCATAGGTCCTCAGGCTGCTTCGCCTTGGCTTTACATCTATCCTCAAGGGTTCCGTGAATTGGT GCTTTATGTTAAGGAAAACTATGGCAATCCTACCATC TACATCACCGAAAAT GGTGTTGATGAATTCAACAATAAGACCTTACCACTCCAGGAAGCCTTGAAGGATGACACTAGAATAGATTACTACCACAAGCACCTCCTTTCACTGCTAAGTGCAATAAGGGACGGAGCAAATGTGAAGGGATACTTTGCATGGTCGCTGCTTGATAACTTCGAGTGGTCGAACGGCTATACTGTTCGCTTTGGGATAAACTTTGTGGATTACAATGACGGAGCGAAGAGATACCCCAAAATGTCTGCCCA TTGGTTCAAGGAGTTCCTCCAGAAGTGATGAAAATAAAAGCGTGTGAAGAGTTGCACACATT GCTCTTCCCAT TTTGAACAGCAAAGAGCATATATGTTACAACAGATGGAGGTATTGCAAGTTT GCAACTAAATAAATCTCTGTCTTCACTCTCT GCGTATAGCTAGCTAAGCGATGGATAGAGAGTTACATCTTCTCTTACGCATATTT CAAAAAATTTAAGAGGTTGTAGTAACTTCTTCATCATATTTTGGAGATGCGATCATAGCA      CAGTGGCAGAGGTTGCTGGCATGCA CCGTCCACGCAGGTTCGATTCTCCTTGAGC           ]
[+] EMBL CB666551             [                               ACTCCCCATGGCAGCTGCAGGGGAAGTGGTGATGCTTGGTGGCATTCTCCTCCCTCTCCTCCTGGTTGTCGCCGTCTCCGGTGAGCCGCCGCCGATCAGCCGGAGGAGCTTCCCCGAGGGGTTCATCTTCGGGACGGCCTCGTCGTCGTATCAGTATGAGGGTGGCGCCAGAGAGGGGGGCAGAGGACCAAGCATCTGGGACACATTCACACACCAGCACCCAGATAAGATTGCTGACAAAAGCAATGGGGACGTGGCTGCAGACTCCTACCATCTATACAAGGAAGATGTGCGCATCATGAAGGATATGGGAGTGGATGCATATAGGTTCTCCATCTCATGGACAAGAATTCTTCCAAATGGAAGTCTGAGCGGTGGAATCAACAGAGAAGGCATCAGCTACTACAACAATTTGATCAATGAACTATTACTGAAAGGGGTGCAACCATTTGTTACCCTTTTCCACTGGGACTCGCCACAGGCATTAGAAGATAAATATAATGGATTTCTTAGCCCTAATATCATAAATGACTATAAGGAGTACGCTGAAACCTGCTTCAAAGAGTTTGGTGACAGAGTGAAACATTGGATCACCTTCAATGAGCCTTTGAGCTTCTGTGTTGCGGGATATGCATCAGGTGGCATGTTTGCACCAGGCCGCTGTTCGCCTTGGGAGGGAAATTGCAGTGCTGGCGATTCAGGAAGGGAGCCTTACACCGCATGCCATCATCAACTACTTGCTCATGCGGAAACTGTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL CB666552             [                                                                                                                                                                                                                                                                                                                                                                                                                                          TCAGCTACTACAACAATTTGATCAATGAACTATTACTGAAAGGGGTGCAACCATTTGTTACCCTTTTCCACTGGGACTCGCCACAGGCATTAGAAGATAAATATAATGGATTTCTTAGCCCTAATATCATAAATGACTATAAGGAGTACGCTGAAACCTGCTTCAAAGAGTTTGGTGACAGAGTGAAACATTGGATCACCTTCAATGAGCCTTTGAGCTTCTGTGTTGCGGGATATGCATCAGGTGGCATGTTTGCACCAGGCCGCTGTTCGCCTTGGGAGGGAAATTGCAGTGCTGGCGATTCAGGAAGGGAGCCTTACACCGCATGCCATCATCAACTACTTGCTCATGCGGAAACTGTTCGGTTGTACAAAGAGAAATATCAGGTCTTACAAAAGGGGAAGATTGGAATAACTTTGGTCTCGAACTGGTTTGTTCCCTTCTCCCGCTCCAAATCCAACATCGATGCTGCAAGGCGTGCTTTAGACTTCATGCTTGGATGGTTTATGGATCCCCTAATTAGAGGCGAGTACCCCCTAAGCATGAGAGAATTGGTTCGGAATCGCTTGCCTCAGTTCACTAAAGAACAATCTGAGTTGATCAAGGGTTCATTCGA TTTTATTGGACTTAATTACTACACTTCAAATTATGCTGGTAGCCTTCCTCCATCAAATGGCCTCAATAACAGCTATAGTACTGATGCTCGAGCTAATCTTACTGCTGTTAGAAACGGCATTCCCATAGGTCCTCAGGCTGCTTCGaacaacggt                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CB647183             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             TAGACTTCATGCTTGGATGGTTTATGGATCCCCTAATTAGAGGCGAGTACCCCCTAAGCATGAGAGAATTGGTTCGGAATCGCTTGCCTCAGTTCACTAAAGAACAATCTGAGTTGATCAAGGGTTCATTCGA TTTTATTGGACTTAATTACTACACTTCAAATTATGCTGGTAGCCTTCCTCCATCAAATGGCCTCAATAACAGCTATAGTACTGATGCTCGAGCTAATCTTACTGCTGTTCGAAACGGCATTCCCATAGGTCCTCAGGCTGCTTCGCCTTGGCTTTACATCTATCCTCAAGGGTTCCGTGAATTGGT GCTTTATGTTAAGGAAAACTATGGCAATCCTACCATC TACATCACCGAAAAT GGTGTTGATGAATTCAACAATAAGACCTTACCACTCCAGGAAGCCTTGAAGGATGACACTAGAATAGATTACTACCACAAGCACCTCCTTTCACTGCTAAGTGCAATAAGGGACGGAGCAAATGTGAAGGGATACTTTGCATGGTCGCTGCTTGATAACTTCGAGTGGTCGAACGGCTATACTGTTCGCTTTGGGATAAACTTTGTGGATTACAATGACGGAGCGAAGAGATACCCCAAAATGTCTGCCCA TTGGTTCAAGGAGTTCCTCCAGAAATGATGAAAATAAAAGCGTGTGAAGAGTTGCACACATT GCTCTTCCCAT TTTGAACAGCAAAGAGCATATATGTTACAACAGATGGAGGTATTGCAAGTTT GCAACTAA                                                                                                                                                                                                                     ]
[-] EMBL CB675343             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ATTCGATTTTTATTGGACTTAATTACTACACTTCAAATTATGCTGGTAGCCTTCCTCCATCAAATGGCCTCAATAACAGCTATAGTACTGATGCTCGAGCTAATCTTACTGCTGTTCGAAACGGCATTCCCATAGGTCCTCAGGCTGCTTCGCCTTGGCTTTACATCTATCCTCAAGGGTTCCGTGAATTGGT GCTTTATGTTAAGGAAAACTATGGCAATCCTACCATC TACATCACCGAAAAT GGTGTTGATGAATTCAACAATAAGCCCTTACCACTCCAGGAAGCCTTGAAGGATGACACTAGAATAGATTACTACCACAAGCACCTCCTTTCACTGCTAAGTGCAATAAGGGACGGAGCAAATGTGAAGGGATACTTTGCATGGTCGCTGCTTGATAACTTCGAGTGGTCGAACGGCTATACTGTTCGCTTTGGGATAAACTTTGTGGATTACAATGACGGAGCGAAGAGATACCCCAAAATGTCTGCCCA TTGGTTCAAGGAGTTCCTCCAGAAATGATGAAAATAAAAGCGTGTGAAGAGTTGCACACATT GCTCTTCCCAT TTTGAACAGCAAAGAGCATATATGTTACAACAGATGGAGGTATTGCAAGTTT GCAACTAAATAAATCTCTGTCTTCACTCTCT GCGTATAGCTAGCTAAGCGATGGATAGAGAGTTACATCTTCTCTTACGCATATTT CAAAAAATTTAAGAGGTTGTAGTAACTTCTTCATCATATTTTGGAGATGCGATCATAGCA      CAGTGGCAGAG                                                        ]
[+] EMBL BI811510             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TTCCGTGAATTGGTGGCTTTATGTTAAGGAAAACTAT GCAATCCTACCATCGTACATCACCGAAAATGGGTGTTGATGAATTCAAC ATAAGACCTTACCACTCCAGGAAGCCTTGAAGGATGACACTAGAATAGATTACTACCACAAGCACCTCCTTTCACTGCTAAGTGC ATAAGGGACGGAGCAAATGTGAAGGGATACTTTGCATGGTCGCTGCTTGATAACTTCGAGTGGTCGAACGGCTATACTGTTCGCTTTGGGATAAACTTTGTGGATTAC ATGACGGAGCGAAGAGATACCCCAAAA GTCTGCCCA TTGGTTCAAGGAGTTCCTCCAGAAATGATGAAAATAAAAGCGTGTGAAGAGTTGCACACATT GCTCTTCCCAT TTTGAACAGC AAGAGCATATATGTTCCCACAGATGGAGGTATTGCAAGTTT GCAACTAAAaa                                                                                                                                                                                                                  ]
[+] EMBL OSS11859A            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     AGATTACTACCACAAGCACCTCCTTTCACTGCTAAGTGCAATAAGGGACGGAGCAAATGTGAAGGGATACTTTGCATGGTCGCTGCTTGATAACTTCGAGTGGTCGAACGGCTATACTGTTCGCTTTGGGATAAACTTTGTGGATTACAATGACGGAGCGAAGAGATACCCCAAAATGTCTGCCCA TTGGTTCAAGGAGTTCCTCCAGAAATGATGAAAATAAAAGCGTGTGAAGAGTTGCACACATT GCTCTTCCCAT TTTGAACAGCAAAGAGCATATATGTTACAACAGATGGAGGTATTGCAAGTTT GCAACTAAATAAATCTCTGTCTTCACTCTCT GCGTATAGCTAGC                                                                                                                                                                                ]
[+] EMBL AU096011             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GATTACTACCACAAGCACCTCCTTTCACTGCTAAGTGCAATAAGGGACGGAGCAAATGTGAAGGGATACTTTGCATGGTCGCTGCTTGATAACTTCGAGTGGTCGAACGGCTATACTGTTCGCTTTGGGATAAACTTTGTGGATTACAATGACGGAGCGAAGAGATACCCCAAAATGTCTGCCCA TTGGTTCAAGGAGTTCCTCCAGAAATGATGAAAATAAAAGCGTGTGAAGAGTTGCACACATT GCTCTTCCCAT TTTGAACAGCAAAGAGCATATATGTTACAACAGATGGAGGTATTGCAAGTTT GCAACTAAATAAATCTCTGTCTTCACTCTCT GCGTATAGCTAGCTAAGCGATGGATAGAGAGTTACATCTTCTCTTACGCATATTT CAAAAAATTTAAGAGGTTGTAGTAACTTCTTCATCATATTTTGGAGATGCGATCATAGCA      CAGTGGCAGAGGTTGCTGGCAaaaa a                                        ]
[+] EMBL BI811418             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        gaccAATGTGAAGGGATACTTTGCATGTTC CTGCTTGATAACTTCGAGTGGTCGAACGGCTATACTGTTCGCTTTGGGATAAACTTTGTGGATTAC ATGACGGAGCGAAGAGATACCCCAAA  GTCTGCCCACTTGGTTCAAGGAGTTCCTCCAGAAATGATGAAAATAAAAGCGTGTGAAGAGTTGCACACATTGGCTCTTCCCCTGTTTGAACAGC AAGAGCATATATGTTCCCACAGATGGAGGTATTGCAAGTTTGGCAACTAAATAAATCTCTGTCTTCACTCTCTGGCGTATAGCTAGCTAAGCGATGGATAGAGAGTTACATCTTCTCTTACGCATATTTCCAAAAAATTTAAGAGGTTGTAGTAA   CTTCATCATATTTTGGAGATGCGATCATAGCACAGCACCAGTGGCAGAGGTTGCTGGCATGCACCCGTCCACGCAGGTTCGATTCTCCTTGAGCCCGGCTCACCA]




>consensus_13322#0
CTCTCTTTCAGCCTCTGGGTCACACACACATACTCCCCATGGCAGCTGCAGGGGAAGTGG
TGATGCTTGGTGGCATTCTCCTCCCTCTCCTCCTGGTTGTCGCCGTCTCCGGTGAGCCGC
CGCCGATCAGCCGGAGGAGCTTCCCCGAGGGGTTCATCTTCGGGACGGCCTCGTCGTCGT
ATCAGTATGAGGGTGGCGCCAGAGAGGGGGGCAGAGGACCAAGCATCTGGGACACATTCA
CACACCAGCACCCAGATAAGATTGCTGACAAAAGCAATGGGGACGTGGCTGCAGACTCCT
ACCATCTATACAAGGAAGATGTGCGCATCATGAAGGATATGGGAGTGGATGCATATAGGT
TCTCCATCTCATGGACAAGAATTCTTCCAAATGGAAGTCTGAGCGGTGGAATCAACAGAG
AAGGCATCAGCTACTACAACAATTTGATCAATGAACTATTACTGAAAGGGGTGCAACCAT
TTGTTACCCTTTTCCACTGGGACTCGCCACAGGCATTAGAAGATAAATATAATGGATTTC
TTAGCCCTAATATCATAAATGACTATAAGGAGTACGCTGAAACCTGCTTCAAAGAGTTTG
GTGACAGAGTGAAACATTGGATCACCTTCAATGAGCCTTTGAGCTTCTGTGTTGCGGGAT
ATGCATCAGGTGGCATGTTTGCACCAGGCCGCTGTTCGCCTTGGGAGGGAAATTGCAGTG
CTGGCGATTCAGGAAGGGAGCCTTACACCGCATGCCATCATCAACTACTTGCTCATGCGG
AAACTGTTCGGTTGTACAAAGAGAAATATCAGGTCTTACAAAAGGGGAAGATTGGAATAA
CTTTGGTCTCGAACTGGTTTGTTCCCTTCTCCCGCTCCAAATCCAACATCGATGCTGCAA
GGCGTGCTTTAGACTTCATGCTTGGATGGTTTATGGATCCCCTAATTAGAGGCGAGTACC
CCCTAAGCATGAGAGAATTGGTTCGGAATCGCTTGCCTCAGTTCACTAAAGAACAATCTG
AGTTGATCAAGGGTTCATTCGATTTTATTGGACTTAATTACTACACTTCAAATTATGCTG
GTAGCCTTCCTCCATCAAATGGCCTCAATAACAGCTATAGTACTGATGCTCGAGCTAATC
TTACTGCTGTTCGAAACGGCATTCCCATAGGTCCTCAGGCTGCTTCGCCTTGGCTTTACA
TCTATCCTCAAGGGTTCCGTGAATTGGTGCTTTATGTTAAGGAAAACTATGGCAATCCTA
CCATCTACATCACCGAAAATGGTGTTGATGAATTCAACAATAAGACCTTACCACTCCAGG
AAGCCTTGAAGGATGACACTAGAATAGATTACTACCACAAGCACCTCCTTTCACTGCTAA
GTGCAATAAGGGACGGAGCAAATGTGAAGGGATACTTTGCATGGTCGCTGCTTGATAACT
TCGAGTGGTCGAACGGCTATACTGTTCGCTTTGGGATAAACTTTGTGGATTACAATGACG
GAGCGAAGAGATACCCCAAAATGTCTGCCCATTGGTTCAAGGAGTTCCTCCAGAAATGAT
GAAAATAAAAGCGTGTGAAGAGTTGCACACATTGCTCTTCCCATTTTGAACAGCAAAGAG
CATATATGTTACAACAGATGGAGGTATTGCAAGTTTGCAACTAAATAAATCTCTGTCTTC
ACTCTCTGCGTATAGCTAGCTAAGCGATGGATAGAGAGTTACATCTTCTCTTACGCATAT
TTCAAAAAATTTAAGAGGTTGTAGTAACTTCTTCATCATATTTTGGAGATGCGATCATAG
CACAGTGGCAGAGGTTGCTGGCATGCACCGTCCACGCAGGTTCGATTCTCCTTGAGCCCG
GCTCACCA

consensusID : consensus_13322#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 493
fasta sequence

                              [AGCTAATCTTACTGCTGTTCGAAACGGCATTCCCATAGGTCCTCAGGCTGCTTCGCCTTGGCTTTACATCTATCCTCAAGGGTTCCGTGAATTGGTGCTTTATGTTAAGGAAAACTATGGCAATCCTACCATCTACATCACCGAAAATGGTGTTGATGAATTCAACAATAAGACCTTACCACTCCAGGAAGCCTTGAAGGATGACACTAGAATAGATTACTACCACAAGCACCTCCTTTCACTGCTAAGTGCAATAAGGGACGGAGCAAATGTGAAGGGATACTTTGCATGGTCGCTGCTTGATAACTTCGAGTGGTCGAACGGCTATACTGTTCGCTTTGGGATAAACTTTGTGGATTACAATGACGGAGCGNNGAGATACCCCAAAAAGTCTGCCCATTGGTTCAAGGAGTTCCTCCAGAAATGATGAAAATAAAAGCGTGTGANNNGNTGCACACATTGCTCTTCCCATTTTGAANNNNAANNNNNATAT]

[+] EMBL CF196443             [AGCTAATCTTACTGCTGTTCGAAACGGCATTCCCATAGGTCCTCAGGCTGCTTCGCCTTGGCTTTACATCTATCCTCAAGGGTTCCGTGAATTGGTGCTTTATGTTAAGGAAAACTATGGCAATCCTACCATCTACATCACCGAAAATGGTGTTGATGAATTCAACAATAAGACCTTACCACTCCAGGAAGCCTTGAAGGATGACACTAGAATAGATTACTACCACAAGCACCTCCTTTCACTGCTAAGTGCAATAAGGGACGGAGCAAATGTGAAGGGATACTTTGCATGGTCGCTGCTTGATAACTTCGAGTGGTCGAACGGCTATACTGTTCGCTTTGGGATAAACTTTGTGGATTACAATGACGGAGCGNNGAGATACCCCAAAAAGTCTGCCCATTGGTTCAAGGAGTTCCTCCAGAAATGATGAAAATAAAAGCGTGTGANNNGNTGCACACATTGCTCTTCCCATTTTGAANNNNAANNNNNATAT]




>consensus_13322#1
AGCTAATCTTACTGCTGTTCGAAACGGCATTCCCATAGGTCCTCAGGCTGCTTCGCCTTG
GCTTTACATCTATCCTCAAGGGTTCCGTGAATTGGTGCTTTATGTTAAGGAAAACTATGG
CAATCCTACCATCTACATCACCGAAAATGGTGTTGATGAATTCAACAATAAGACCTTACC
ACTCCAGGAAGCCTTGAAGGATGACACTAGAATAGATTACTACCACAAGCACCTCCTTTC
ACTGCTAAGTGCAATAAGGGACGGAGCAAATGTGAAGGGATACTTTGCATGGTCGCTGCT
TGATAACTTCGAGTGGTCGAACGGCTATACTGTTCGCTTTGGGATAAACTTTGTGGATTA
CAATGACGGAGCGNNGAGATACCCCAAAAAGTCTGCCCATTGGTTCAAGGAGTTCCTCCA
GAAATGATGAAAATAAAAGCGTGTGANNNGNTGCACACATTGCTCTTCCCATTTTGAANN
NNAANNNNNATAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13322#0      CTCTCTTTCAGCCTCTGGGTCACACACACATACTCCCCATGGCAGCTGCAGGGGAAGTGG 60
consensus_13322#1      ------------------------------------------------------------
                                                                                   

consensus_13322#0      TGATGCTTGGTGGCATTCTCCTCCCTCTCCTCCTGGTTGTCGCCGTCTCCGGTGAGCCGC 120
consensus_13322#1      ------------------------------------------------------------
                                                                                   

consensus_13322#0      CGCCGATCAGCCGGAGGAGCTTCCCCGAGGGGTTCATCTTCGGGACGGCCTCGTCGTCGT 180
consensus_13322#1      ------------------------------------------------------------
                                                                                   

consensus_13322#0      ATCAGTATGAGGGTGGCGCCAGAGAGGGGGGCAGAGGACCAAGCATCTGGGACACATTCA 240
consensus_13322#1      ------------------------------------------------------------
                                                                                   

consensus_13322#0      CACACCAGCACCCAGATAAGATTGCTGACAAAAGCAATGGGGACGTGGCTGCAGACTCCT 300
consensus_13322#1      ------------------------------------------------------------
                                                                                   

consensus_13322#0      ACCATCTATACAAGGAAGATGTGCGCATCATGAAGGATATGGGAGTGGATGCATATAGGT 360
consensus_13322#1      ------------------------------------------------------------
                                                                                   

consensus_13322#0      TCTCCATCTCATGGACAAGAATTCTTCCAAATGGAAGTCTGAGCGGTGGAATCAACAGAG 420
consensus_13322#1      ------------------------------------------------------------
                                                                                   

consensus_13322#0      AAGGCATCAGCTACTACAACAATTTGATCAATGAACTATTACTGAAAGGGGTGCAACCAT 480
consensus_13322#1      ------------------------------------------------------------
                                                                                   

consensus_13322#0      TTGTTACCCTTTTCCACTGGGACTCGCCACAGGCATTAGAAGATAAATATAATGGATTTC 540
consensus_13322#1      ------------------------------------------------------------
                                                                                   

consensus_13322#0      TTAGCCCTAATATCATAAATGACTATAAGGAGTACGCTGAAACCTGCTTCAAAGAGTTTG 600
consensus_13322#1      ------------------------------------------------------------
                                                                                   

consensus_13322#0      GTGACAGAGTGAAACATTGGATCACCTTCAATGAGCCTTTGAGCTTCTGTGTTGCGGGAT 660
consensus_13322#1      ------------------------------------------------------------
                                                                                   

consensus_13322#0      ATGCATCAGGTGGCATGTTTGCACCAGGCCGCTGTTCGCCTTGGGAGGGAAATTGCAGTG 720
consensus_13322#1      ------------------------------------------------------------
                                                                                   

consensus_13322#0      CTGGCGATTCAGGAAGGGAGCCTTACACCGCATGCCATCATCAACTACTTGCTCATGCGG 780
consensus_13322#1      ------------------------------------------------------------
                                                                                   

consensus_13322#0      AAACTGTTCGGTTGTACAAAGAGAAATATCAGGTCTTACAAAAGGGGAAGATTGGAATAA 840
consensus_13322#1      ------------------------------------------------------------
                                                                                   

consensus_13322#0      CTTTGGTCTCGAACTGGTTTGTTCCCTTCTCCCGCTCCAAATCCAACATCGATGCTGCAA 900
consensus_13322#1      ------------------------------------------------------------
                                                                                   

consensus_13322#0      GGCGTGCTTTAGACTTCATGCTTGGATGGTTTATGGATCCCCTAATTAGAGGCGAGTACC 960
consensus_13322#1      ------------------------------------------------------------
                                                                                   

consensus_13322#0      CCCTAAGCATGAGAGAATTGGTTCGGAATCGCTTGCCTCAGTTCACTAAAGAACAATCTG 1020
consensus_13322#1      ------------------------------------------------------------
                                                                                   

consensus_13322#0      AGTTGATCAAGGGTTCATTCGATTTTATTGGACTTAATTACTACACTTCAAATTATGCTG 1080
consensus_13322#1      ------------------------------------------------------------
                                                                                   

consensus_13322#0      GTAGCCTTCCTCCATCAAATGGCCTCAATAACAGCTATAGTACTGATGCTCGAGCTAATC 1140
consensus_13322#1      ----------------------------------------------------AGCTAATC 8
                                                                           ********

consensus_13322#0      TTACTGCTGTTCGAAACGGCATTCCCATAGGTCCTCAGGCTGCTTCGCCTTGGCTTTACA 1200
consensus_13322#1      TTACTGCTGTTCGAAACGGCATTCCCATAGGTCCTCAGGCTGCTTCGCCTTGGCTTTACA 68
                       ************************************************************

consensus_13322#0      TCTATCCTCAAGGGTTCCGTGAATTGGTGCTTTATGTTAAGGAAAACTATGGCAATCCTA 1260
consensus_13322#1      TCTATCCTCAAGGGTTCCGTGAATTGGTGCTTTATGTTAAGGAAAACTATGGCAATCCTA 128
                       ************************************************************

consensus_13322#0      CCATCTACATCACCGAAAATGGTGTTGATGAATTCAACAATAAGACCTTACCACTCCAGG 1320
consensus_13322#1      CCATCTACATCACCGAAAATGGTGTTGATGAATTCAACAATAAGACCTTACCACTCCAGG 188
                       ************************************************************

consensus_13322#0      AAGCCTTGAAGGATGACACTAGAATAGATTACTACCACAAGCACCTCCTTTCACTGCTAA 1380
consensus_13322#1      AAGCCTTGAAGGATGACACTAGAATAGATTACTACCACAAGCACCTCCTTTCACTGCTAA 248
                       ************************************************************

consensus_13322#0      GTGCAATAAGGGACGGAGCAAATGTGAAGGGATACTTTGCATGGTCGCTGCTTGATAACT 1440
consensus_13322#1      GTGCAATAAGGGACGGAGCAAATGTGAAGGGATACTTTGCATGGTCGCTGCTTGATAACT 308
                       ************************************************************

consensus_13322#0      TCGAGTGGTCGAACGGCTATACTGTTCGCTTTGGGATAAACTTTGTGGATTACAATGACG 1500
consensus_13322#1      TCGAGTGGTCGAACGGCTATACTGTTCGCTTTGGGATAAACTTTGTGGATTACAATGACG 368
                       ************************************************************

consensus_13322#0      GAGCGAAGAGATACCCCAAAATGTCTGCCCATTGGTTCAAGGAGTTCCTCCAGAAATGAT 1560
consensus_13322#1      GAGCGNNGAGATACCCCAAAAAGTCTGCCCATTGGTTCAAGGAGTTCCTCCAGAAATGAT 428
                       *****  ************** **************************************

consensus_13322#0      GAAAATAAAAGCGTGTGAAGAGTTGCACACATTGCTCTTCCCATTTTGAACAGCAAAGAG 1620
consensus_13322#1      GAAAATAAAAGCGTGTGANNNGNTGCACACATTGCTCTTCCCATTTTGAANNNNAANNNN 488
                       ******************   * ***************************    **    

consensus_13322#0      CATATATGTTACAACAGATGGAGGTATTGCAAGTTTGCAACTAAATAAATCTCTGTCTTC 1680
consensus_13322#1      NATAT------------------------------------------------------- 493
                        ****                                                       

consensus_13322#0      ACTCTCTGCGTATAGCTAGCTAAGCGATGGATAGAGAGTTACATCTTCTCTTACGCATAT 1740
consensus_13322#1      ------------------------------------------------------------
                                                                                   

consensus_13322#0      TTCAAAAAATTTAAGAGGTTGTAGTAACTTCTTCATCATATTTTGGAGATGCGATCATAG 1800
consensus_13322#1      ------------------------------------------------------------
                                                                                   

consensus_13322#0      CACAGTGGCAGAGGTTGCTGGCATGCACCGTCCACGCAGGTTCGATTCTCCTTGAGCCCG 1860
consensus_13322#1      ------------------------------------------------------------
                                                                                   

consensus_13322#0      GCTCACCA 1868
consensus_13322#1      --------