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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13324#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1715 fasta sequence
[AGACCACCTCCTCCTCGAGCTTCCCCTCCTCCCCCTCTTTCCAAATTTCCCCAATCTCGCGTCGCTTCTTCCCCGAATTCCCCAACCTCGCATCCCGATTCCTCCCGCGGATCGTGCGGCGACCTCGCCCAAAATCCCCCGCCGGATTGGCCTCGCCGATGGCTTAATTGGCGATTTCGACTCTGCAATGGAGGCGCAGTGGCTCGCCGAGTACCCGCACCAGGGCGCCGACAAGCGGCCGCGGAAGCGGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAGGCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCGACCGCTTTTCTGCCACCGCCACCAATCTATTATACAGGACCACCACGCAATCTTTCGCCTCCCTGGAGGCCAGATGACAAGGATGGACACTATGTTTTCGCAGTTGGGGAGAACCTTACACCAAGATATAGAATACTTAGCAAGATGGGTGAAGGGACTTTTGGACAAGTCTTAGAGTGCTGGGACTTGGAACACCAAGAGACAGTGGCTATCAAAATTGTGCGCTCCCTTCAGAAATATCGAGAGGCTGCTATGATTGAAATTGATGTGCTTCAGAGGCTTGGGAAGCATGATTTTACTGGTAGCCGCTGTGTGCAAATACGGAATTGGTTTGACTATCGTAATCATATATGTATAGTATTTGAGAGGCTCGGACCAAGCTTATATGACTTCCTCCGAAAGAATAGTTATCGTGCATTTCCGATCGACCTTGTTCGGGAATTTGCCAGGCAAATATTAGAGTCTGTTGCATTTATGCATGACCTGCGACTTATTCACACAGATCTGAAACCTGAGAACATTCTCCTTGTTTCATCAGAATCTATCCGGGTGCCTGATTATAAGGTTACAATACGGCCCCCAAAGGATGGTTCCTTTTTTAAGAATCTTCCAAAATCTAGTGCTATCAAGCTGATTGATTTTGGAAGTACAACATTCGAACACCAAGACCACAATTATGTGGTATCAACAAGGCGTTATCGTGCCCCTGAAGTTATCCTTGGTCTTGGGTGGAATTATTCATGTGATTTGTGGAGTGTGGGATGCATTTTAGTTGAACTCTGCTCGGGTGAAGCTCTCTTTCAAACACATGAAAATTTGGAGCATTTGGCTATGATGGAGAGAGTTCTAGGTCCCCTTCCAAAACATATGATTGTCAGAGCTGATCGCCGTGCTGAAAAGTATTTCAGACGTGGATTAAGGTTGGACTGGCCAGAGGGGGCTGCCTCACGGGAAAGCCTGAAGGCAGTCTGGAAATTGCCTCGTCTGCAGAATCTGGTAATGCAACATGTTGATCATTCTGCTGGAGATCTTATAGATC-TTCTTCAAGGCCTTCTTCGGTATGATCCTGATGCGCGCCTAAAGGCACGTGAAGCTCTTCAACACCCGTTCTTTACAAGAT-GCCACAGAAGATGTGGTTACTGAGACTATACTGAGATTAAAATGCTCAATGCTGTATTTCTTCATTTTGATGTGTAAGAA-CCACCCA-AAAAAAAAGTGAAGATGTT-CCACAAAAATGAAATGTGCTAACTCGCATTCTGTTCGATGATGTG-CAAGGTAACTGTTGTATATAGACA-GAGTTCTACGACTGCCGATTTATTTTAACTGGGAGATATTTTTCAATTCTTAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK103207 [AGACCACCTCCTCCTCGAGCTTCCCCTCCTCCCCCTCTTTCCAAATTTCCCCAATCTCGCGTCGCTTCTTCCCCGAATTCCCCAACCTCGCATCCCGATTCCTCCCGCGGATCGTGCGGCGACCTCGCCCAAAATCCCCCGCCGGATTGGCCTCGCCGATGGCTTAATTGGCGATTTCGACTCTGCAATGGAGGCGCAGTGGCTCGCCGAGTACCCGCACCAGGGCGCCGACAAGCGGCCGCGGAAGCGGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAGGCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCGACCGCTTTTCTGCCACCGCCACCAATCTATTATACAGGACCACCACGCAATCTTTCGCCTCCCTGGAGGCCAGATGACAAGGATGGACACTATGTTTTCGCAGTTGGGGAGAACCTTACACCAAGATATAGAATACTTAGCAAGATGGGTGAAGGGACTTTTGGACAAGTCTTAGAGTGCTGGGACTTGGAACACCAAGAGACAGTGGCTATCAAAATTGTGCGCTCCCTTCAGAAATATCGAGAGGCTGCTATGATTGAAATTGATGTGCTTCAGAGGCTTGGGAAGCATGATTTTACTGGTAGCCGCTGTGTGCAAATACGGAATTGGTTTGACTATCGTAATCATATATGTATAGTATTTGAGAGGCTCGGACCAAGCTTATATGACTTCCTCCGAAAGAATAGTTATCGTGCATTTCCGATCGACCTTGTTCGGGAATTTGCCAGGCAAATATTAGAGTCTGTTGCATTTATGCATGACCTGCGACTTATTCACACAGATCTGAAACCTGAGAACATTCTCCTTGTTTCATCAGAATCTATCCGGGTGCCTGATTATAAGGTTACAATACGGCCCCCAAAGGATGGTTCCTTTTTTAAGAATCTTCCAAAATCTAGTGCTATCAAGCTGATTGATTTTGGAAGTACAACATTCGAACACCAAGACCACAATTATGTGGTATCAACAAGGCGTTATCGTGCCCCTGAAGTTATCCTTGGTCTTGGGTGGAATTATTCATGTGATTTGTGGAGTGTGGGATGCATTTTAGTTGAACTCTGCTCGGGTGAAGCTCTCTTTCAAACACATGAAAATTTGGAGCATTTGGCTATGATGGAGAGAGTTCTAGGTCCCCTTCCAAAACATATGATTGTCAGAGCTGATCGCCGTGCTGAAAAGTATTTCAGACGTGGATTAAGGTTGGACTGGCCAGAGGGGGCTGCCTCACGGGAAAGCCTGAAGGCAGTCTGGAAATTGCCTCGTCTGCAGAATCTGGTAATGCAACATGTTGATCATTCTGCTGGGGATCTTATAGATC TTCTTCAAGGCCTTCTTCGGTATGATCCTGATGCGCGCCTAAAGGCACGTGAAGCTCTTCAACACCCGTTCTTTACAAGAT GCCACAGAAGATGTGGTTACTGAGACTATACTGAGATTAAAATGCTCAATGCTGTATTTCTTCATTTTGATGTGTAAGAA CCACCCA AAAAAAAAGTGAAGATGTT CCACAAAAATGAAATGTGCTAACTCGCATTCTGTTCGATGATGTG CAAGGTAACTGTTGTATATAGACA GAGTTCTACGACTGCCGATTTATTTTAACTGGGAGATATTT ]
[+] EMBL CB675536 [ TCCTCGAGCTTCCCCTCCTCCCCCTCTTTCCAAATTTCCCCAATCTCGCGTCGCTTCTTCCCCGAATTCCCCAACCTCGCATCCCGATTCCTCCCGCGGATCGTGCGGCGACCTCGCCCAAAATCCCCCGCCGGATTGGCCTCGCCGATGGCTTAATTGGCGATTTCGACTCTGCAATGGAGGCGCAGTGGCTCGCCGAGTACCCGCACCAGGGCGCCGACAAGCGGCCGCGGAAGCGGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAGGCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCGACCGCTTTTCTGCCACCGCCACCAATCTATTATACAGGACCACCACGCAATCTTTCGCCTCCCTGGAGGCCAGATGACAAGGATGGACACTATGTTTTCGCAGTTGGGGAGAACCTTACACCAAGATATAGAATACTTAGCAAGATGGGTGAAGGGACTTTTGGACAAGTCTTAGAGTGCTGGGACTTGGAACACCAAGAGACAGTGGCTATCAAAATTGTGCGCTCCCTTCAGAAATATCGAGAGGCTGCTATGATTGAAATTGATGTGCTTCAGAGGCTTGGGAAGCATGATTTTACTGGTAGCCGCTGTGTGCAAATACGGAATTGGTTTGACTATCGTAATCATATATGTATAGTATTTGAGAGGCTCGGACCAAGCTTATATGACTTCCTCCGAAAGAATAGTTATCGTGCATTTCCGATCGACCTTGTTCGGGAATTTGCCAGACAAATATTAGAGTCTGTTGCATTTATGC ]
[+] EMBL OSS16515A [ ATTTTGGAAGTACAACATTCGAACACCAAGACCACAATNATGTGGTATCAACAAGGCATTATCGTGCCCCTGAAGTTATCCTTGGTCTTGGGTGGAATTATTCATGTNATTTGTGGAGTGTGGGATGCATTTNAGTTGAACTCTGCTCGGGTGAAGCTCTCTTTCAAACACATGAAAATTTGGAGCATTTGGCTATGATGGAGAGAGTTCTAGGTCCCCTTCCAAAACATATAATTGTNAGAGCTGATCGCNGTGCTGAAANGTATTTCAGACGTG ]
[+] EMBL CB000228 [ cAACACATGAAAATTTGGAGCATTTGGCTATCATGGAGAGAGTTCTAGGTCCCCTTCCAAAACATATGATTGTCAGAGCTGATCGCCGTGCTGAAAAGTATTTCAGACGTGGATTAAGGTTGGACTGGCCAGAGGGGGCTGCCTCACGGGAAAGCCTGAAGGCAGTCTGGAAATTGCCTCGTCTGCAGAATCTGGTAATGCAACATGTTGATCATTCTGCTGGAGATCTTATAGATC TTCTTCAAGGCCTTCTTCGGTATGATCCTGATGCGCGCCTAAAGGCACGTGAAGCTCTTCAACACCCGTTCTTTACAAGAT GCCACAGAAGATGTGGTTACTGAGACTATACTGAGATTAAAATGCTCAATGCTGTATTTCTTCATTTTGATGTGTAAGAA CCACCCA AAAAAAAAGTGAAGATGTT CCACAAAAAAAAAA ]
[+] EMBL CA998860 [ AACACATGAAAATTTGGAGCATTTGGCTATGATGGAGAGAGTTCTAGGTCCCCTTCCAAAACATATGATTGTCAGAGCTGATCGCCGTGCTGAAAAGTATTTCAGACGTGGATTAAGGTTGGACTGGCCAGAGGGGGCTGCCTCACGGGAAAGCCTGAAGGCAGTCTGGAAATTGCCTCGTCTGCAGAATCTGGTAATGCAACATGTTGATCATTCTGCTGGAGATCTTATAGATC TTCTTCAAGGCCTTCTTCGGTATGATCCTGATGCGCGCCTAAAGGCACGTGAAGCTCTTCAACACCCGTTCTTTACAAGAT GCCACAGAAGATGTGGTTACTGAGACTATACTGAGATTAAAATGCTCAATGCTGTATTTCTTCATTTTGATGTGTAAGAA CCACCCA AAAAAAAAGTGAAGATGTT CCACAAAAAAAAAA ]
[+] EMBL BI809955 [ ATCCCCGTGCTGAAAAGTATTTCAGACGTGGATTAAGTTTGGACTGCCCAGAGGGGCCTCCCTCACGGGAAACCCTGAAGCCAGTCTGGAAATTGCCTCGTCT CAGAATCTGGTAATCCCACATGTTGATCATTCTGCTGGAGATCTTATAGATCTTTCTTCAAGCCCTTCTTCGGTATGATCCTGATGTGCGCCTAAAGGCACGTGAAGCTCTTCAACCCCCGTTCTTTACAAGATGGCCCCAGAAGATGTGGTTACTGAGACTATACTGAGATTAAAATGCTCAATGCTGTATTTCTTCATTTTGATGTGTAAGAACCCCCCCA AAAAAAAAGTGAAGATGTTCCCACCAAAATGAAATGTGCTAACTCGCCTTCTGTTCGATGATGTGCCAAGGTAACTGTTGTATATAGACACGAGTTCTACGACTGCCGATTTATTTGAACTGGGAGATATTTTTCAATTCTTAAAAAAAAAA ]
[+] EMBL C22653 [ GACTGGCCAGAGGGGGCTGCCTCACGGGAAAGCCTGAAGGCAGTCTGGAAATTGCCTCGTCTGCAGAATCTGGTAATGCNACATGTTGATCATTCTGCTGGAGATCTTATAGATC TTCTTCAAGGCCTTCTTCGGTATGATCCTGATGCGCGCCTAAAGGCACGTGAAGCTCTTCAACACCCGTTCTTTACAAGAT GCCACAGAAGATGTGGTTACTGAGACTATACTGAGATTAAAATGCTCAATGCTGTATTTCTTCATTTTGATGTGTAAGAA CCACCCA AAAAAAAAGTGAAGATGTT CCACAAAAATGAAATGTGCTAACTCGCATTCTGTTCGATGATGTG CAAGGTAACTGTTGTATATAGACA GAGTTCTACGACTGCCGATTTATTTTAACTGGGNGATATTTTTCAA AAAAAAAAAAAAAAAAAAAA]
[+] EMBL CA998821 [ gGGAAATTGGCTGAGATGCAGAAGGTGGTAATGC ACATGTAGATCATTCTGCTGGAGATCTTATAGATC TTCTTCAAGGCCTTCTTCGGTATGATCCTGATGCGCGCATAAAGGCACGTGAAGCTCTTCAACACCCGTTCTTTACAGGAT GCCACAAAAGATGTGGTTACTGATACTATACTGAGATTAAAATGCTCAGTGCTGAATTTCTTCATTTTGATGTGTAAGAA CCACCCACAAAAAAAAGTGAAGATGTT CCACAAAAATGAAATGTGCTAACTCGCATTCTGTTCGATGATGTG CAAGGAAACTGTTGTATATAGACA GAGTTCTACGACTGCCGATTTATTTTAACT ]
consensusID : consensus_13324#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1695 fasta sequence
[TGTGCAAGGTAACTGTTGTATATAGACAGAGTTCTACGACTGCCGATTTATTTTAACTGGGAGATATTTTTCAATTCTTACAAGTTCCTGTCTTTAAACCTCACATTTTACTTCATACTAATTTTTGCAAGACTGCCCAGTACTAGCAGGTAGCATGCAGAAATCTCAACTTGGTGGAGTCAATTGAGGATAGAGGGAATGCCAGTGGCTCTCATGAAAGATTGGTACACTATATTTGATGGTGAGCTGGTGATATAAGGTGAGCATTGCATTCTGACCATGTCCTGTTTGGTGTGGAGATAGGCTTATCAATATAATTTTATGTGCATTTAGGATCTCAGTATTTCTCGTGAAAATTGGTGATGGCCTGTTCACTTGACCTTCATGTCCATTCTATTTTACCTTGAAATGCATGATTAGCCCTGGAAACTAACCGGACGTTAGAGTTACACCCTGGTGGGTTTTGCTTGTGACTGGTCATATTTCTTAAAACAAGTCTCGGGTGTTGGATAAAAGTTTGGTAATTAACTGAGCTTTTGAGTCTGACACTTGGCTTGGAAAGGTTTGCGACAACTTTGAAATTGTGGACAGTAGTCTAAATCTCAAGATGTGCTCAACTTTGAAATATTGTCAACTGTGACTAAAGTCCAGAATCCTTGATAGCAGCTGATATATATTTAATTTACCTGAATATACCGTAAAGTACTGGCTTTAAAATCTTACTGGTTCCCATATTACTAGCAGCCACCAAGCTCTTGGATTGGAGATGTTTGTTAGATAAATCCTTGTGGGTTTTGAGCTTAAAACTATACTCAACCTGTGTCTATCGTTTGCGCCAGGTGAGCTTGTTCTTAATATCTTACAAAAGTCATTTCCTTTATCAAACTTTAGTGATGTGATGATTGTATTCATCTATTGCTTGTTTCTTCTTTCTATAAAGGCTCATTACTTAAAAGTTATCTTCTGGCAAAAAAAAAGACTGTTATTTGGTCTGATAACATCTTATTGGCTGCTACAATATCTTCTTTGACAAACTGAGTATTTGAAATCTGCTGGAAAATGTTTTACAACTATATTTAAGCAAGGACGAGTA-TTTTTTTTAATTTATCGTTTTCATTTTTGCAATTGAGTGAAACTACCGTTGAAGGTAATTTATCAACATCGAGTGTCAACACTAGTGAAACAAAATTAGTCCGGCTTGTTTTGTTGATTAAAGATGAAATCATTCTATAGGCAAGATAGACTAACCCCAGAATGCTGGTAGTTTAGGCTCGTTTTGGACATGCGAAAGATTTTACTCATCGAAGGTGGATTTGGAGAGCTGCTGCTTCCTACTGTGAATGGATGAGCAGCTGGTAAATGTTTTACTCATTGGGCTACGTGACGTCAGCCCAAAGATCGCCTCCAAAGCTGTAGCAGCGGGTCAATTGTACAAGAGCCTGTAACTCTGTAAGGTATGATATACTAACCCTTCGGAACGGGCGCCAACGCTTCCATCGTCATGTTACATGAGATCGCGTTCGAAGACGGCGAGCAGCA-GGTTTGATCACAGGTTTCGAACCTGGCA-TTCTCGTATAGTCGTATTTGCTTCGATCATCATATGTTACAGAGATCGC-GTTTG-TTTGAAGACGGCGAGCAGCGG-TTTTGAT-CACA-GGTTTCGAACCAACAACCCTGTACTAATATATACTACTGCAT]
[+] EMBL AK106580 [TGTGCAAGGTAACTGTTGTATATAGACAGAGTTCTACGACTGCCGATTTATTTTAACTGGGAGATATTTTTCAATTCTTACAAGTTCCTGTCTTTAAACCTCACATTTTACTTCATACTAATTTTTGCAAGACTGCCCAGTACTAGCAGGTAGCATGCAGAAATCTCAACTTGGTGGAGTCAATTGAGGATAGAGGGAATGCCAGTGGCTCTCATGAAAGATTGGTACACTATATTTGATGGTGAGCTGGTGATATAAGGTGAGCATTGCATTCTGACCATGTCCTGTTTGGTGTGGAGATAGGCTTATCAATATAATTTTATGTGCATTTAGGATCTCAGTATTTCTCGTGAAAATTGGTGATGGCCTGTTCACTTGACCTTCATGTCCATTCTATTTTACCTTGAAATGCATGATTAGCCCTGGAAACTAACCGGACGTTAGAGTTACACCCTGGTGGGTTTTGCTTGTGACTGGTCATATTTCTTAAAACAAGTCTCGGGTGTTGGATAAAAGTTTGGTAATTAACTGAGCTTTTGAGTCTGACACTTGGCTTGGAAAGGTTTGCGACAACTTTGAAATTGTGGACAGTAGTCTAAATCTCAAGATGTGCTCAACTTTGAAATATTGTCAACTGTGACTAAAGTCCAGAATCCTTGATAGCAGCTGATATATATTTAATTTACCTGAATATACCGTAAAGTACTGGCTTTAAAATCTTACTGGTTCCCATATTACTAGCAGCCACCAAGCTCTTGGATTGGAGATGTTTGTTAGATAAATCCTTGTGGGTTTTGAGCTTAAAACTATACTCAACCTGTGTCTATCGTTTGCGCCAGGTGAGCTTGTTCTTAATATCTTACAAAAGTCATTTCCTTTATCAAACTTTAGTGATGTGATGATTGTATTCATCTATTGCTTGTTTCTTCTTTCTATAAAGGCTCATTACTTAAAAGTTATCTTCTGGCAAAAAAAAAGACTGTTATTTGGTCTGATAACATCTTATTGGCTGCTACAATATCTTCTTTGACAAACTGAGTATTTGAAATCTGCTGGAAAATGTTTTACAACTATATTTAAGCAAGGACGAGTA TTTTTTTTAATTTATCGTTTTCATTTTTGCAATTGAGTGAAACTACCGTTGAAGGTAATTTATCAACATCGAGTGTCAACACTAGTGAAACAAAATTAGTCCGGCTTGTTTTGTTGATTAAAGATGAAATCATTCTATAGGCAAGATAGACTAACCCCAGAATGCTGGTAGTTTAGGCTCGTTTTGGACATGCGAAAGATTTTACTCATCGAAGGTGGATTTGGAGAGCTGCTGCTTCCTACTGTGAATGGATGAGCAGCTGGTAAATGTTTTACTCATTGGGCTACGTGACGTCAGCCCAAAGATCGCCTCCAAAGCTGTAGCAGCGGGTCAATTGTACAAGAGCCTGTAACTCTGTAAGGTATGATATACTAACCCTTCGGAACGGGCGCCAACGCTTCCATCGTCATGTTACATGAGATCGCGTTCGAAGACGGCGAGCAGCA GGTTTGATCACAGGTTTCGAACCTGGCA TTCTCGTATAGTCGTATTTGCTTCGATCATCATATGTTACAGAGATCGC GTTTG TTTGAAGACGGCGAGCAGCGG TTTTGAT CACA GGTTTCGAACCAACAACCCTGTACTAATATATACTACTGCAT]
[+] EMBL CA765280 [ TATTGCTTGTTTCTTCCTTCTATAAAGGCTCATTACTCAAAAGTTATCTTCTGGCAAAAAAAAAGACTGTTATTTGGTCTGATAACATCTTATTGGCTGCTACAATATCTTCTTTGACAAACTGAGTATTTGAAATCTGCTGGAAAATGTTTTACAACTATATTTAAGCAAGGACGAGTATTTTTTTTTAATTTATCGTTTTCATTTTTGCAATTGAGTGATACTACCGTTGAAGATAATTTATCAACATCGAGTGTCAACACTAGTGAAACAAAATTAGTCCGGCTTGTTTTGTTGATTAAAGATGAAATCATTCTATAGGCAAGATAGACTAACCCCAGAGTGCTGGTAGTTTAGGCTCGTTTTGGACATGCGAAAGATTTTACTCATCGAAGGTGGATTTGGAGAGCTGCTGCTTCCTACTGTGAATGGATGAGTAGCTGGTAAATATTTTACTCATTGGGCTACGTGACGTCAGCCCAAAGATCGCCTCCAAAGCTGTAGCAGCGGGTCAATTGTACAAGAGCCTGTAACTCTGTAAGGTATGATCTACTAACCCTTCGGAACGGGCGCCAACGCTTCCATCGTCATGTTACATGAGATCGCGTTCGAAGACGGCGAGCAGCAGGGTTTGATCACAGGTTTCGAACCTGGCATTTCTCGTATAGTCGTATTTGCTTCGATCATCATATGNTACAGAGATCGCGGTTTGNTTTGAAGACGGCGAGCAGCGGNTTTTGATCCACAGGGTTTCGAACCAACAACCCTGNACTAATATATACTACT ]
consensusID : consensus_13324#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 821 fasta sequence
[CCCTCTAATGCTTTCCAAATTTCCCCAATCTCGCGTCGCTTCCTCCCCGAATTCCCCAACCTCGCATCCCGATTCCTCCCGCGGATCGTGCGGCGACCTCGCCCAAAATCCCCCGCCGGATTGGCCTCGCCGATGGCTTAATTGGCGATTTCGACTCTGCAATGGAGGCGCAGTGGCTCGCCGAGTACCCGCACCAGGGCGCCGACAAGCGGCCGCGGAAGCGGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAGGCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCGACCGCTTTTCTGCCACCGCCACCAATCTATTATACAGGACCACCACGCAATCTTTCGCCTCCCTGGAGGCCAGATGACAAGGATGGACACTATGTTTTCGCAGTTGGGGAGAACCTTACACCAAGATATAGAATACTTAGCAAGATGGGTGAAGGGACTTTTGGACAAGTCTTAGAGTGCTGGGACTTGGAACACCAAGAGACAGTGGCTATCAAAATTGTGCGCTCCCTTCAGAAATATCGAGAGGCTGCTATGATTGAAATTGATGTGCTTCAGAGGCTTGGGAAGCATGATTTTACTGGTAGCCGCTGTGTGCAAATACGGAATTGGTTTGACTATCGTAATCATATATGTATAGTATTTGAGAGGCTCGGACCAAGCTTATATGACTTCCTCCGAAAGAATAGTTATCGTGCATTTCCGATCGACCTTGTTCGGGAATTTGCCAGACAAATATTAGAGTCTGTTGCATTTATGCATGACCTGCGACTTATTCAC]
[+] EMBL CB661364 [CCCTCTAATGCTTTCCAAATTTCCCCAATCTCGCGTCGCTTCCTCCCCGAATTCCCCAACCTCGCATCCCGATTCCTCCCGCGGATCGTGCGGCGACCTCGCCCAAAATCCCCCGCCGGATTGGCCTCGCCGATGGCTTAATTGGCGATTTCGACTCTGCAATGGAGGCGCAGTGGCTCGCCGAGTACCCGCACCAGGGCGCCGACAAGCGGCCGCGGAAGCGGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAGGCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCGACCGCTTTTCTGCCACCGCCACCAATCTATTATACAGGACCACCACGCAATCTTTCGCCTCCCTGGAGGCCAGATGACAAGGATGGACACTATGTTTTCGCAGTTGGGGAGAACCTTACACCAAGATATAGAATACTTAGCAAGATGGGTGAAGGGACTTTTGGACAAGTCTTAGAGTGCTGGGACTTGGAACACCAAGAGACAGTGGCTATCAAAATTGTGCGCTCCCTTCAGAAATATCGAGAGGCTGCTATGATTGAAATTGATGTGCTTCAGAGGCTTGGGAAGCATGATTTTACTGGTAGCCGCTGTGTGCAAATACGGAATTGGTTTGACTATCGTAATCATATATGTATAGTATTTGAGAGGCTCGGACCAAGCTTATATGACTTCCTCCGAAAGAATAGTTATCGTGCATTTCCGATCGACCTTGTTCGGGAATTTGCCAGACAAATATTAGAGTCTGTTGCATTTATGCATGACCTGCGACTTATTCAC]
consensusID : consensus_13324#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 694 fasta sequence
[TTCATGTGATTTGTGGAGTGTGGGATGCATTTTAGTTGAACTCTGCTCGGGTGAAGCTCTCTTTCAAACACATGAAAATTTGGAGCATTTGGCTATGATGGAGAGAGTTTTAGGTCCCCTTCCAAAACATATGATTGTCAGAGCTGAGTATGTATACAAGGTCTTCGTTATAGTTTCATGATTTATTATAATCTAAGATAAGATGGTTTACATCTAGGCTTAGGTTGCTGCTGAGTTTCATTTGAAGTTCTTTCAAATTATCAATCACTTGCATGTACTTGTTACTTCTTTTTTACAGTCGCCGTGCTGAAAAGTATTTCAGACGTGGATTAAGGTTGGACTGGCCAGAGGGGGCTGCCTCCCGGGAAAGCCTGAAGGCAGTCTGGAAATTGCCTCGTCTGCAGAATCTGGTAATGCAACATGTTGATCATTCTGCTGGAGATCTTATAGATTTTCTTCAAGGCCTTCTTCGGTATGATCCTGATGCGCGCCTAAAGGCACGTGAAGCTTTTCAACACCCGTTCTTTACAAGATGCCCCAGAAGATGTGGTTACTGAGACTATACTGAGATTAAAATGCTCAATGCTGTATTTTTTCATTTTGATGTGTAAGACCCCCCCAAAAAAAAAAGTGAAGATGTTCCCCAAAAATGAAATGTGCTAACTCGCATTCTGTTTGATGATGTGCAAGGTAA]
[-] EMBL CB661363 [TTCATGTGATTTGTGGAGTGTGGGATGCATTTTAGTTGAACTCTGCTCGGGTGAAGCTCTCTTTCAAACACATGAAAATTTGGAGCATTTGGCTATGATGGAGAGAGTTTTAGGTCCCCTTCCAAAACATATGATTGTCAGAGCTGAGTATGTATACAAGGTCTTCGTTATAGTTTCATGATTTATTATAATCTAAGATAAGATGGTTTACATCTAGGCTTAGGTTGCTGCTGAGTTTCATTTGAAGTTCTTTCAAATTATCAATCACTTGCATGTACTTGTTACTTCTTTTTTACAGTCGCCGTGCTGAAAAGTATTTCAGACGTGGATTAAGGTTGGACTGGCCAGAGGGGGCTGCCTCCCGGGAAAGCCTGAAGGCAGTCTGGAAATTGCCTCGTCTGCAGAATCTGGTAATGCAACATGTTGATCATTCTGCTGGAGATCTTATAGATTTTCTTCAAGGCCTTCTTCGGTATGATCCTGATGCGCGCCTAAAGGCACGTGAAGCTTTTCAACACCCGTTCTTTACAAGATGCCCCAGAAGATGTGGTTACTGAGACTATACTGAGATTAAAATGCTCAATGCTGTATTTTTTCATTTTGATGTGTAAGACCCCCCCAAAAAAAAAAGTGAAGATGTTCCCCAAAAATGAAATGTGCTAACTCGCATTCTGTTTGATGATGTGCAAGGTAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13324#0 -AGACCACCTCCTCCTCGAGCTTCCCCTCCTCCCCCTCTTTCCAAATTTCCCCAATCTCG 59
consensus_13324#2 ---------------------------CCCTCTAATGCTTTCCAAATTTCCCCAATCTCG 33
consensus_13324#3 ------------------------------------------------------------
consensus_13324#1 TGTGCAAGGTAACTGTTGTATATAGACAGAGTTCTACGACTGCCGATTTATTTTAACTGG 60
consensus_13324#0 CGTCGCTTCTTCCCCGAATTCCCCAACCTCGCATCCCGATTCCTCCCGCGGATCGTGCGG 119
consensus_13324#2 CGTCGCTTCCTCCCCGAATTCCCCAACCTCGCATCCCGATTCCTCCCGCGGATCGTGCGG 93
consensus_13324#3 -----------------------------------TTCATGTGATTTGTGGAGTGTGGGA 25
consensus_13324#1 GAGATATTTTT---CAATTCTTACAAGTTCCTGTCTTTAAACCTCACATTTTACTTCATA 117
* *
consensus_13324#0 CG-ACCTCGCCCAAAATCCCCCGCCGGATTGGCCTCGCCGATGGCTTAATTGGCGATTTC 178
consensus_13324#2 CG-ACCTCGCCCAAAATCCCCCGCCGGATTGGCCTCGCCGATGGCTTAATTGGCGATTTC 152
consensus_13324#3 TGCATTTTAGTTGAACTCTGCT--CGGGTGAAGCTC-TCTTTCAAACACATGAAAATTTG 82
consensus_13324#1 CTAATTTTTGCAAGA--CTGCC--CAGTACTAGCAGGTAGCATGCAGAAATCTCAACTTG 173
* * * * * * * * * * * **
consensus_13324#0 GACTCTGCAATG-GAGGCGCAGTGGCTCGCCGAGTACCCGCACCAGGGCGCCGACAAGCG 237
consensus_13324#2 GACTCTGCAATG-GAGGCGCAGTGGCTCGCCGAGTACCCGCACCAGGGCGCCGACAAGCG 211
consensus_13324#3 GAGCATTTGGCT-ATGATGGAGAGAGTTTT--AGGTCCCCTTCCAAA------ACATATG 133
consensus_13324#1 GTGGAGTCAATTGAGGATAGAGGGAATGCC--AGTGGCTCTCATGAAAGATTGGTACACT 231
* * ** * * ** * *
consensus_13324#0 GCCGCGGAAGCGGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAA 297
consensus_13324#2 GCCGCGGAAGCGGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAA 271
consensus_13324#3 ATTGTCAGAGCTG---------AGTATGTATACAAGGTCTTCGTTAT---AGTTTCATG- 180
consensus_13324#1 ATATTTGATGGTGA--------GCTGGTGATATAAGGTGAGCATTGCATTCTGACCATGT 283
* * ** * * * *
consensus_13324#0 GGCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCGACCGCTTT 357
consensus_13324#2 GGCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCGACCGCTTT 331
consensus_13324#3 ---ATTTATTATAATCTAAGATAAGATGGTTTACATCTAGGCTTAGGTTGCTGCTGAGTT 237
consensus_13324#1 CCTGTTTGGTGTGGAGATAGGCTTATCAATATAATTTTATGTGCATTTAGGATCTCAGTA 343
** * * * * * * * * * *
consensus_13324#0 TCTGCCA---CCGCCACCAATCTATTATACA--GGACCACCACGCAATCTTTCGCCTCCC 412
consensus_13324#2 TCTGCCA---CCGCCACCAATCTATTATACA--GGACCACCACGCAATCTTTCGCCTCCC 386
consensus_13324#3 TCATTTG---AAGTT-CTTTCAAATTATCAA--TCACTTGCATGTACTTGTTACTTCTTT 291
consensus_13324#1 TTTCTCGTGAAAATTGGTGATGGCCTGTTCACTTGACCTTCATGTCCATTCTATTTTACC 403
* * * * ** ** * *
consensus_13324#0 TGGAGGCCAGATGACAAGGATGGACACTATGTTTTCGCAGTTGGGGAGAACCTTACACCA 472
consensus_13324#2 TGGAGGCCAGATGACAAGGATGGACACTATGTTTTCGCAGTTGGGGAGAACCTTACACCA 446
consensus_13324#3 TTTA---CAGTCGCCGTGC-TGAAAAGTAT--TTCAGACGTGGATTAAGGTTGGACTGGC 345
consensus_13324#1 TTGAAATGCATGATTAGCCCTGGAAACTAA---CCGGACGT----TAGAGTT--ACACCC 454
* * ** * * ** * ** * **
consensus_13324#0 AGATATAGAATACTTAGCAAGATGGGTGAAGGGACTTTTGGACAAGTCTTAGAGTGCTGG 532
consensus_13324#2 AGATATAGAATACTTAGCAAGATGGGTGAAGGGACTTTTGGACAAGTCTTAGAGTGCTGG 506
consensus_13324#3 CAGAGGGGGCTGCCTCCCGGGAAAGCCTGAAGGCAGTCTGGAAATTGCCTCGTCTGCAGA 405
consensus_13324#1 TGGTGGGTTTTGCTT---GTGACTGGTCATA--TTTCTTAAAACAAGTCTCGGGTGTTGG 509
* * * ** * * * * * ** *
consensus_13324#0 GACTTGGAACACCAAGAGACAGTGGCTATCAAAATTGTGCGCTC--CCTTCAGAAATATC 590
consensus_13324#2 GACTTGGAACACCAAGAGACAGTGGCTATCAAAATTGTGCGCTC--CCTTCAGAAATATC 564
consensus_13324#3 ATCTGGTAATGC---AACATGTTGATCATTCTGCTGGAG--ATC--TTATAGATTTTCTT 458
consensus_13324#1 A--TAAAAGTTTGGTAATTAACTGAGCTTTTGAGTCTGACACTTGGCTTGGAAAGGTTTG 567
* * * ** * * * * *
consensus_13324#0 GAGAGGCTGCTATGAT-TG-AAATTGATGTGCTTC-AGAGGCTTGGGAAGCATGATTTTA 647
consensus_13324#2 GAGAGGCTGCTATGAT-TG-AAATTGATGTGCTTC-AGAGGCTTGGGAAGCATGATTTTA 621
consensus_13324#3 CAAGGCCTTCTTCGGTATG-ATCCTGATGCGCGCCTAAAGGCACGTGAAGC------TTT 511
consensus_13324#1 CGACAACTTTGAAATTGTGGACAGTAGTCTAAATCTCAAGATGTGCTCAACTTTGAAATA 627
** * ** * * * * ** * * * *
consensus_13324#0 CTGGTAGCCGCTGTG----TGCAA-ATACGG-AATTGGTTTGAC---TATCGTAATCATA 698
consensus_13324#2 CTGGTAGCCGCTGTG----TGCAA-ATACGG-AATTGGTTTGAC---TATCGTAATCATA 672
consensus_13324#3 TCAACACCCGTTCTT----TACAAGATGCCCCAGAAGATGTGGT---TACTGAGACTA-- 562
consensus_13324#1 TTGTCAACTGTGACTAAAGTCCAGAATCCTTGATAGCAGCTGATATATATTTAATTTACC 687
* * * * ** ** * * ** ** *
consensus_13324#0 TATGTATAGTATTTGAGAGGCTCGGACCAAGCTTATATGACTTCCTCCGAAAGAATAGTT 758
consensus_13324#2 TATGTATAGTATTTGAGAGGCTCGGACCAAGCTTATATGACTTCCTCCGAAAGAATAGTT 732
consensus_13324#3 ----TACTGAGATTAAAATGCTC-----AATGCTGTATTTTTTCATTTTGATGTGTAAG- 612
consensus_13324#1 TGAATATACCG--TAAAGTACTGGCTTTAAAATCTTACTGGTTCCCAT--ATTACTAGC- 742
** * * ** ** ** *** * **
consensus_13324#0 ATCGTGCATTTCCGATCGACCTTGTTCGGGAATTTGCCAGGCAAATATTAGAGTCTGTTG 818
consensus_13324#2 ATCGTGCATTTCCGATCGACCTTGTTCGGGAATTTGCCAGACAAATATTAGAGTCTGTTG 792
consensus_13324#3 -----ACCCCCCCAAAAAAAAAAGTGAAGATGTTCCCCAAAAATGAAATGTGCTAACTCG 667
consensus_13324#1 -----AGCCACCAAGCTCTTGGATTGGAGATGTTTGTTAGATAAATCCTTGTGGGTTTTG 797
* * * ** * * * * *
consensus_13324#0 CATTTA--TGCATGACCTGCGACTTATTCACACAGATC-TGAAACCTGAGAACATTCTCC 875
consensus_13324#2 CATTTA--TGCATGACCTGCGACTTATTCAC----------------------------- 821
consensus_13324#3 CATTCTGTTTGATGATGTGCAAGGTAA--------------------------------- 694
consensus_13324#1 AGCTTA---AAACTATACTCAACCTGTGTCTATCGTTTGCGCCAGGTGAGCTTGTTCTTA 854
* * * * * *
consensus_13324#0 TTGTTTCATCAGAATCTATCCGGGTGCCTGATTATAAGGTTACAATACGGCCCCCAAAGG 935
consensus_13324#2 ------------------------------------------------------------
consensus_13324#3 ------------------------------------------------------------
consensus_13324#1 ATATCTTACAAAAGTCATTTCCTTTATCAAACTTTAGTGATGTGATGATTGTATTCATCT 914
consensus_13324#0 ATGGTTCCTTTTTTAAGAATCTTCCAAAATCTAGTGCTATCAAGCTGATTGATTTTGGAA 995
consensus_13324#2 ------------------------------------------------------------
consensus_13324#3 ------------------------------------------------------------
consensus_13324#1 ATTGCTTGTTTCTTCTT--TCTATAAAGGCTCATTACTTAAAAGTTATCTTCTGGCAAAA 972
consensus_13324#0 GTACAACATTCGAACACCAAGACCACAATTATGTGGTATCAACAAGGCGTTATCGTGCCC 1055
consensus_13324#2 ------------------------------------------------------------
consensus_13324#3 ------------------------------------------------------------
consensus_13324#1 AAAAAGACTGTTATTTGGTCTGATAACATCTTATTGGCTGCTACAATATCTTCTTTGACA 1032
consensus_13324#0 CTGAAGTTATCCTTGGTCTTGGGTGGAATTATTCATGTGATTTGTGGAGTGTGGGATGCA 1115
consensus_13324#2 ------------------------------------------------------------
consensus_13324#3 ------------------------------------------------------------
consensus_13324#1 AACTGAGTATTTGAAATCTGCTGGAAAATGTTTTACAACTATATTTAAGCAAGGACGAGT 1092
consensus_13324#0 TTTTAGTTGAACTCTGCTCGGGTGAAGCTCTCTTTCAAACACATGAAAATTTGGAGCATT 1175
consensus_13324#2 ------------------------------------------------------------
consensus_13324#3 ------------------------------------------------------------
consensus_13324#1 ATTTTTTTTAATTTATCGTTTTCATTTTTGCAATTGAGTGAAACTACCGTTGAAGGTAAT 1152
consensus_13324#0 TGGCTATGATGGAGAGAGTTCTAGGTCCCCTTCCAAAACATATGATTGTCAGAGCTGATC 1235
consensus_13324#2 ------------------------------------------------------------
consensus_13324#3 ------------------------------------------------------------
consensus_13324#1 TTATCAACATCGAGTGTCAACACTAGTGAAACAAAATTAGTCCGGCTTGTTTTGTTGATT 1212
consensus_13324#0 GCCGTGCTGAAAAGTATTTCAG--ACGTGGATTAAGGTTGGACTGGCCAGAGGGGGCTGC 1293
consensus_13324#2 ------------------------------------------------------------
consensus_13324#3 ------------------------------------------------------------
consensus_13324#1 AAAGATGAAATCATTCTATAGGCAAGATAGACTAACCCCAGAATGCTGGTAGTTTAGGCT 1272
consensus_13324#0 CTCACGGGAAAGCCTGAAGGCAGTCTGGAAATTGCCTCGTCTGCAGAATCTGGTAATGCA 1353
consensus_13324#2 ------------------------------------------------------------
consensus_13324#3 ------------------------------------------------------------
consensus_13324#1 CGTTTTGGACATGCGAAAGATTTTACTCATCGAAGGTGGATTTGGAGAGCTGCTGCTTCC 1332
consensus_13324#0 ACATGTTGATCATTCTGCTGGAGATCTTATAGATCTTCTTCAAGGCCTTCTTCGGTATGA 1413
consensus_13324#2 ------------------------------------------------------------
consensus_13324#3 ------------------------------------------------------------
consensus_13324#1 TACTGTGAATGGATGAGCAGCTGGTAAATGTTTTACTCATTGGGCTACGTGACGTCAGCC 1392
consensus_13324#0 TCCTGATGCGCGCCTAAAGGCACGTGAAGCTCTTCAACACCCGTTCTTTACAAGATGCCA 1473
consensus_13324#2 ------------------------------------------------------------
consensus_13324#3 ------------------------------------------------------------
consensus_13324#1 CAAAGATCGCCTCCAAAGCTGTAGCAGCGGGTCAATTGTACAAGAGCCTGTAACTCTGTA 1452
consensus_13324#0 CAGAAGATGTGGTTACTGAGACTATACTGAGATTAAAATGCTCAATGCTGTATTTCTTCA 1533
consensus_13324#2 ------------------------------------------------------------
consensus_13324#3 ------------------------------------------------------------
consensus_13324#1 AGGTATGATATACTAACCCTTCGGAACGGGCGCCAACGCTTCCATCGTCATGTTACATGA 1512
consensus_13324#0 TTTTGATGTGTAAGA-ACCACCCAAAAAAAAAGTGAAGATGTTCCACAAAAATGAAATGT 1592
consensus_13324#2 ------------------------------------------------------------
consensus_13324#3 ------------------------------------------------------------
consensus_13324#1 GATCGCGTTCGAAGACGGCGAGCAGCAGGTTTGATCACAGGTTTCGAACCTGGCATTCTC 1572
consensus_13324#0 GCTAACTCGCATTCTGTTCGATGATGTGCAAGGTAACTGTTGTATATAGACAGAGTTCTA 1652
consensus_13324#2 ------------------------------------------------------------
consensus_13324#3 ------------------------------------------------------------
consensus_13324#1 GTATAGTCGTATTTGCTTCGATCATCATATGTTACAGAGATCGCGTTTGTTTGAAGACGG 1632
consensus_13324#0 CGACTGCCGATTTATTTTAACTGGGAGATATTTTTCAATTCTTAAAAAAAAAAAAAAAAA 1712
consensus_13324#2 ------------------------------------------------------------
consensus_13324#3 ------------------------------------------------------------
consensus_13324#1 CGAGCAGCGGTTTTGATCACAGGTTTCGAACCAACAACCCTGTACTAATATATACTACTG 1692
consensus_13324#0 AAA 1715
consensus_13324#2 ---
consensus_13324#3 ---
consensus_13324#1 CAT 1695
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||