These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13335#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 546 fasta sequence [AAAATTTGGTAAAGAGAAACATCATGGTGGCAGGCAGGATTCAGTACGAAGCACCAAGAAATTCCAGAGACCTG-AATTAGAAGCTACACAAAGCATAAAGCAAGCCTCTCATATCTTTCCTCATACAGATGATGTTCTCAAAGAGGCTGTTAATCAAACACATCAGCAGTATGCACTAACGACTAACATGATGGACTGTCTCTCAAGTTTTTGAGCTGCTAAACCTAAACCACAGATGTCCTAAAGCTACAAGCATTTACCAACAATCTTCTCCCCAAGAGGATTATTTTCTTTCTAGCACCCTGCAGAGGACACAACTGACCCCAGATGAGCTGCTCAACTATC-GCTTTGAGGGTCTAC---CATCATCATCATCATCACCATCGTCATCATCATCGTCGTCATCTTCATCGTCGCCACCCGACCTCTTCCTCTTCGACGAGGAT-TGCGCCTTCGCGGAATCATCATCGCCATCATCGTCCTCATCAATCTCTTCATCCTCGGNAACCTCACNGTTTTCATCTGGCTCGAAGTCANCTGGAATGCTCT] [+] EMBL CB618968 [AAAATTTGGTAAAGAGAAACATCATGGTGGCAGGCAGGATTCAGTACGAAGCACCAAGAAATTCCAGAGACCTG AATTAGAAGCTACACAAAGCATAAAGCAAGCCTCTCATATCTTTCCTCATACAGATGATGTTCTCAAAGAGGCTGTTAATCAAACACATCAGCAGTATGCACTAACGACTAACATGATGGACTGTCTCTCAAGTTTTTGAGCTGCTAAACCTAAACCACAGATGTCCTAAAGCTACAAGCATTTACCAACAATCTTCTCCCCAAGAGGATTATTTTCTTTCTAGCACCCTGCAGAGGACACAACTGACCCCAGATGAGCTGCTCAACTATC GCTTTGAGGGTCTACCATCATCATCATCATCATCACCATCGTCATCATCATCGTCGTCATCTTCATCGTCGCCACCCGACCTCTTCCTCTTCGACGAGGAT TGCGCCTTCGCGGAATCATCATCGCCATCATCGTCCTCA ] [+] EMBL CB678957 [ AAGAGAAACATCATGGTGGCAGGCAGGATTCCGTACGAAGCACCAAGAAATTCCAGAGACCTG AATTAGAAGCTACACAAAGCATAAAGCAAGCCTCTCATATCTTTCCTCATACAGATGATGTTCTCAAAGAGGCTGTTAATCAAACACATCAGCAGTATGCACTAACGACTAACATGATGGACTGTCTCTCAAGTTTTTGAGCTGCTAAACCTAAACCACAGATGTCCTAAAGCTACAAGCATTTACCAACAATCTTCTCCCCAAGAGGATTATTTTCTTTCTAGCACCCTGCAGAGGACACAACTGACCCCAGATGAGCTGCTCAACTATC GCTTTGAGGGTCTAC CATCATCATCATCATCACCATCGTCATCATCATCGTCGTCATCTTCATCGTCGCCACCCGACCTCTTCCTCTTCGACGAGGAT TGCGCCTTCGCGGAATCATCATCGCCATCATCGTCCTCA ] [-] EMBL C27015 [ GAAATTCCAGAGACCTGAAATTAGAAGCTACACAAAGCATAAAGCAAGCCTCTCATATCTTTCCTCATACAGATGATGGTCTCAAAGAGGCTGTTAATCAAACACATCAGCAGTATGCACTAACGACTAACATGATGGACTGTCTCTCAAGTTTTTGAGCTGCTAAACCTAAACCACAGATGTCCTAAAGCTACAAGCATTTACCAACAATCTTCTCCCCAAGAGGATTATTTTCTTTCTAGCACCCTGCAGAGGACACAACTGACCCCAGATGAGCTGCTCAACTATC GCTTTGAGGGTCTAC CATCATCATCATCATCACCATCGTCATCATCATCGTCGTCATCTTCATCGTCGCCACCCGACCTCTTCCTCTTCGACGAGGATNTG GCCTTCGCGGAATCATCATCGCCATCATCGTCCTCATCAATCTCTTCAT ] [-] EMBL AU102063 [ ttttttTACACAAAGCATAAAGCAAGCCTCTCATATCTTTCCTCATACAGATGATGTTCTCAAAGAGGCTGTTAATCAAACACATCAGCAGTATGCACTAACGACTAACATGATGGACTGTCTCTCAAGTTTTTGAGCTGCTAAACCTAAACCACAGATGTCCTAAAGCTACAAGCATTTACCAACAATCTTCTCCCCAAGAGGATTATTTTCTTTCTAGCACCCTGCAGAGGACACAACTGACCCCAGATGAGCTGCTCAACTATC GCTTTGAGGGTCTAC CATCATCATCATCATCACCATCGTCATCATCATCGTCGTCATCTTCATCGTCGCCACCCGACCTCTTCCTCTTCGACGAGGAT TGCGCCTTCGCGGAATCATCATCGCCATCATCGTCCTCATCAATCTCTTCATCCTCGGNAACCTCACNGTTTTCATCTGGCTCGAAGTCANCTGGAATGCTCT] [-] EMBL AU161968 [ agTACAC AAGCATAAAGCAAG CTCTCATATC TTCCTCATACAGATGATGTTCTCAAAGAGGCTGTTAATCAAACACATCAGCAGTATGCACTAACGACTAACATGATGGACTGTCTCTCAAGTTTTTGAGCTGCTAAACCTAAACCACAGATGTCCTAAAGCTACAAGCATTTACCAACAATCTTCTCCCCAAGAGGATTATTTTCTTTCTAGCACCCTGCAGAGGACACAACTGACCCCAGATGAGCTGCTCAACTATC GCTTTGAGGGTCTAC CATCATCATCATCATCACCATCGTCATCATCATCGTCGTCATCTTCATCGTCGCCACCCGACCTCTTCCTCTTCGACGAGGAT TGCGCCTTCGCGGAATCATCATCGCCATCATCGTCCTCAT ] [-] EMBL CA998380 [ AGCCTCTCATATCTTTCCTCATACAGATGATGTTCTCAAAGAGGCTGTTAATCAAACACATCAGCAGTATGCACTAACGACTAACATGATGGACTGTCTCTCAAGTTTTTGAGCTGCTAAACCTAAACCACAGATGTCCTAAAGCTACAAGCATTTACCAACAATCTTCTCCCCAAGAGGATTATTTTCTTTCTAGCACCCTGCAGAGGACACAACTGACCCCAGATGAGCTGCTCAACTATC GCTTTGAGGGTCTAC CATCATCATCATCATCACCATCGTCATCATCATCGTCGTCATCTTCATCGTCGCCACCCGACCTCTTCCTCTTCGACGAGGAT TGCGCCTTCGCGGAATCATCATCGCCATCATCGTCCTCAT ] [-] EMBL CA999761 [ CCTCATACAGATGATGTTCTCAAAGAGGCTGTTAATCAAACACATCAGCAGTATGCACTAACGACTAACATGATGGACTGTCTCTCAAGTTTTTGAGCTGCTAAACCTAAACCACAGATGTCCTAAAGCTACAAGCATTTACCAACAATCTTCTCCCCAAGAGGATTATTTTCTTTCTAGCACCCTGCAGAGGACACAACTGACCCCAGATGAGCTGCTCAACTATC GCTTTGAGGGTCTAC CATCATCATCATCATCACCATCGTCATCATCATCGTCGTCATCTTCATCGTCGCCACCCGACCTCTTCCTCTTCGACGAGGAT TGCGCCTTCGCGGAATCATCATCGCCATCATCGTCCTCAT ] [-] EMBL AU198276 [ TGGACTGTCTCTCAAGTTTTTGAGCTGCTAAACCTAAACCACAGATGTCCTAAAGCTACAAGCATTTACCAACAATCTTCTCCCCAAGAGGATTATTTTCTTTCTAGCACCCTGCAGAGGACACAACTGACCCCAGATGAGCTGCTCAACTATC GCTTTGAGGGTCTAC CATCATCATCATCATCACCATCGTCATCATCATCGTCGTCATCTTCATCGTCGCCACCCGACCTCTTCCTCTTCGACGAGGAT TGCGCCTTCGCGGAATCATCATCGCCATCATCGTCCTCAT ] [-] EMBL AU068872 [ GAGCTGCTAAACCTAAACCACAGATGTCCAAAAGCTACAAGCATTTACCAACAATCTTCTCCCCAAGAGGATTATTTTCTTTCTAGCACCCTGCAGAGGACACAACTGACCCCAGATGAGCTGCTCAACTATC GCTTTGAGGGTCTAC CATCATCATCATCATCACCATCGTCATCATCATCGTCGTCATCTTCATCGTCGCCACCCGACCTCTTCCTCTTCGACGAGGAT TGCGCCTTCGCGGAATCATCATCGCCATCATCGTCCTCAT ] [-] EMBL AU065949 [ TACCAACAATCTTCTCCCCAAGAGGATTATTTTCTTTNTAGCACCCTGCAGAGGACACAACTGACCCCAGATGAGCTGCTCAANTATCGGCTTTGAGGG CTAC CATCATCATCATCATCACCATCGTCATCATCATCGTCGTCATCTTCATCGTCGCCACCCGACCTCTTCCTCTTCGACGAGGAT TGCGCCTTCGCGGAATCATCATCGCCATCATCGGCCTCAT ] consensusID : consensus_13335#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 366 fasta sequence [TTTTTTTTTTTTTTTTTTTTCTCAAAGAGGCTGTTAATCAAACACATCAGCAGTATGCACTAACGACTAACATGATGGACTGTCTCTCAAGTTTTTGAGCTGCTAAACCTAAACCACAGATGTCCTAAAGCTACAAGCATTTACCAACAATCTTCTCCCCAAGAGGATTATTTTCTTTCTAGCACCCTGCAGAGGACACAACTGACCCCAGATGAGCTGCTCAACTATCGCTTTGAGGGTCTACCATCATCATCATCATCACCATCGTCATCATCATCGTCGTCATCTTCATCGTCGCCACCCGACCTCTTCCTCTTCGACGAGGATTGCGCCTTCGCGGAATCATCATCGCCATCATCGTCCTCA] [+] EMBL CF325047 [TTTTTTTTTTTTTTTTTTTTCTCAAAGAGGCTGTTAATCAAACACATCAGCAGTATGCACTAACGACTAACATGATGGACTGTCTCTCAAGTTTTTGAGCTGCTAAACCTAAACCACAGATGTCCTAAAGCTACAAGCATTTACCAACAATCTTCTCCCCAAGAGGATTATTTTCTTTCTAGCACCCTGCAGAGGACACAACTGACCCCAGATGAGCTGCTCAACTATCGCTTTGAGGGTCTACCATCATCATCATCATCACCATCGTCATCATCATCGTCGTCATCTTCATCGTCGCCACCCGACCTCTTCCTCTTCGACGAGGATTGCGCCTTCGCGGAATCATCATCGCCATCATCGTCCTCA] consensusID : consensus_13335#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 174 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTCAGTACGAAGCACCAAGAAATTCCAGAGACCTGAATTAGAAGCTACACAAAGCATAAAGCAAGCCTCTCATANCTTNCCTCATACAGATGATGTNCTCAAAGAGGNTGTNAATCAAACCCANNANNANNNTNNNTTACGGACTTAANATGAT] [-] EMBL AU197224 [TTTTTTTTTTTTTTTTTTTTTTCAGTACGAAGCACCAAGAAATTCCAGAGACCTGAATTAGAAGCTACACAAAGCATAAAGCAAGCCTCTCATANCTTNCCTCATACAGATGATGTNCTCAAAGAGGNTGTNAATCAAACCCANNANNANNNTNNNTTACGGACTTAANATGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13335#0 AAAATTTGGTAAAGAGAAACATCATGGTGGCAGGCAGGATTCAGTACGAAGCACCAAGAA 60 consensus_13335#1 ------------------------------------------------------------ consensus_13335#2 ------------------------------------------------------------ consensus_13335#0 ATTCCAGAGACCTGAATTAGAAGCTACACAAAGCATAAAGCAAGCCTCTCATATCTTTCC 120 consensus_13335#1 --------------------------------------------------------TTTT 4 consensus_13335#2 --------------------------------------------------------TTTT 4 ** consensus_13335#0 TCATACAGATGATGTTCTCAAAGAGGCTGTTAATCAAACACATCAGCAGTATGCACTAAC 180 consensus_13335#1 TTTTTTTTTTTTTTTTCTCAAAGAGGCTGTTAATCAAACACATCAGCAGTATGCACTAAC 64 consensus_13335#2 TTTTTTTTTTTTTTTTTTCAGTACGA--AGCACCAAGAAATTCCAGAGACCTGAATTAGA 62 * * * * ** *** * * * * * *** ** * ** consensus_13335#0 GACTAACATGATGGACTGTCTCTCAAGTTTTTGAGCTGCTAAACCTAAACCACAGATGTC 240 consensus_13335#1 GACTAACATGATGGACTGTCTCTCAAGTTTTTGAGCTGCTAAACCTAAACCACAGATGTC 124 consensus_13335#2 AGCTAC----ACAAAGCATAAAGCAAGCCTCTCA-TANCTTNCCTCATACAGATGATGTN 117 *** * * * **** * * * ** * * ** ***** consensus_13335#0 CTAAAGCTACAAGCATTTACCAACAATCTTCTCCCCAAGAGGATTATTTTCTTTCTAGCA 300 consensus_13335#1 CTAAAGCTACAAGCATTTACCAACAATCTTCTCCCCAAGAGGATTATTTTCTTTCTAGCA 184 consensus_13335#2 CTCAAA--GAGGNTGTNAATCA--AACCCANNANNANNNTNNNTTACGGACTTAANATGA 173 ** ** * * ** ** * *** *** * * consensus_13335#0 CCCTGCAGAGGACACAACTGACCCCAGATGAGCTGCTCAACTATCGCTTTGAGGGTCTAC 360 consensus_13335#1 CCCTGCAGAGGACACAACTGACCCCAGATGAGCTGCTCAACTATCGCTTTGAGGGTCTAC 244 consensus_13335#2 T----------------------------------------------------------- 174 consensus_13335#0 CATCATCATCATCATCACCATCGTCATCATCATCGTCGTCATCTTCATCGTCGCCACCCG 420 consensus_13335#1 CATCATCATCATCATCACCATCGTCATCATCATCGTCGTCATCTTCATCGTCGCCACCCG 304 consensus_13335#2 ------------------------------------------------------------ consensus_13335#0 ACCTCTTCCTCTTCGACGAGGATTGCGCCTTCGCGGAATCATCATCGCCATCATCGTCCT 480 consensus_13335#1 ACCTCTTCCTCTTCGACGAGGATTGCGCCTTCGCGGAATCATCATCGCCATCATCGTCCT 364 consensus_13335#2 ------------------------------------------------------------ consensus_13335#0 CATCAATCTCTTCATCCTCGGNAACCTCACNGTTTTCATCTGGCTCGAAGTCANCTGGAA 540 consensus_13335#1 CA---------------------------------------------------------- 366 consensus_13335#2 ------------------------------------------------------------ consensus_13335#0 TGCTCT 546 consensus_13335#1 ------ consensus_13335#2 ------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||