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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13337#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1082 fasta sequence
[AGAGAATCTTAAAATCTCTCCTCTCTCTCCAAGTCCCTGCCTCTCACTAGATATCATTCATACATAAATGCCAACCTGTTTGCTTTCTCAGCTAGAAAAACAGAGTTCTTGGTTACAAAGATCTTGACTTGCTTGGGAGAGGAAGAGAGAGGAGTTTCTTGCTTTCTTCAGAGGGAAATTGGCTTCTTGGAATCCTAATTAGAGCAAATACATGATATCCTAGGAGATAAACACACACACAAAAATCTAATTGAGGAAACTGATTGCCACTAGCTTCACCAAGAAATGGAGAGGGAGCAGATGAGGATGGCCATCCTGAGGCAAGAACAAACATTCAGACAACAGGTTCATGAGCTGCACAGACTGTACCATGTTCAGAAACAGCTGATGAAACAGATGCAGATCGCCAAGCTGAACCAAGCTCAGGCAATCGCT-GCCAACGCCGAAACCAAACCGAAATTCGAGATCACTTTCGCCGAGAATTCAACCAACCATCACCACCACCACCAATTCTACAGCTTCCAGAGCAGCAAGATCATGTCTCCCCCTGCAGCAGCAGCAGCAGCAGC-AGATCAAGAAGAGGAAGAAGAATGCGACCT-CCAGCTGACGCTGGCGACGGGGAGCAGCGGCGGCGGCGATGGCACGGCGAGGGGGCACAAGGGGAAGAAGGAGGTGAGGTCATCCAACTCGGACTCCGGCACGG-CGG-CGTCGTCGACGT-CGACGGAGT-CCG-AGCT-G-GCCCAGTT-CAAGAATCATCATCACCATCAGTTGG-ACTG-CGCGGCGGCGGCGCCGGTGGCGTCGCCGGCGGCGAGGTTCCAGGGCGAGAGCAAGAAGAGGGTGGTCGTCGTCGTGGACAACGAGATGAGCCTCCTCCAGCCTCCATGGCTCAACCAGTGCTTGAGCTTGAGGATGGCGTGATTAGCTTATAAAATAAAAATTGTAGATTTGTTGCATCGATGAAGAAGAAGAAGAAGAAGAAGAGATCGATCGATCGAGGAGGGATGGATGGATGCTGTTACTTACGTTGTAAATCACAGAGCTAATCTTCTTTTTTTCCTGCAAGAATTGGTAAAGAGATGAACAAA]
[+] EMBL CF280715 [AGAGAATCTTAAAATCTCTCCTCTCTCTCCAAGTCCCTGCCTCTCACTAGATATCATTCATACATAAATGCCAACCTGTTTGCTTTCTCAGCTAGAAAAACAGAGTTCTTGGTTACAAAGATCTTGACTTGCTTGGGAGAGGAAGAGAGAGGAGTTTCTTGCTTTCTTCAGAGGGAAATTGGCTTCTTGGAATCCTAATTAGAGCAAATACATGATATCCTAGGAGATAAACACACACACAAAAATCTAATTGAGGAAACTGATTGCCACTAGCTTCACCAAGAAATGGAGAGGGAGCAGATGAGGATGGCCATCCTGAGGCAAGAACAAACATTCAGACAACAGGTTCATGAGCTGCACAGACTGTACCATGTTCAGAAACAGCTGATGAAACAGATGCAGATCGCCAAGCTGAACCAAGCTCAGGCAATCGCT GCCAACGCCGAAACCAAACCGAAATTCGAGATCACTTTCGCCGAGAATTCAACCAACCATCACTACCACCACCAATTCTACAGCTTCCAGAGCAGCAAGATCATGTCTCCCCCTGCAGCAGCAGCAGCAGCAGC AGATCAAGAAGAGGAAGAAGAATGCGACCT CCAGCTGACGCTG ]
[+] EMBL CF281751 [ TCATTCATACATAAATGCCAACCTGTTTGCTTTCTCAGCTAGAAAAACAGAGTTCTTGGTTACAAAGATCTTGACTTGCTTGGGAGAGGAAGAGAGAGGAGTTTCTTGCTTTCTTCAGAGGGAAATTGGCTTCTTGGAATCCTAATTAGAGCAAATACATGATATCCTAGGAGATAAACACACACACAAAAATCTAATTGAGGAAACTGATTGCCACTAGCTTCACCAAGAAATGGAGAGGGAGCAGATGAGGATGGCCATCCTGAGGCAAGAACAAACATTCAGACAACAGGTTCATGAGCTGCACAGACTGTACCATGTTCAGAAACAGCTGATGAAACAGATGCAGATCGCCAAGCTGAACCAAGCTCAGGCAATCGCT GCCAACGCCGAAACCAAACCGAAATTCGAGATCACTTTCGCCGAGAATTCAACCAACCATCACCACCACCACCAATTCTACAGCTTCCAGAGCAGCAAGATCATGTCTCCCCCTGCAGCAGCAGCAGCAGCAGC AGATCAAGAAGAGGAAGAAGAATGCGACCT CCAGCTGACGCTGGC ]
[+] EMBL AK066700 [ TTCATACATAAATGCCAACCTGTTTGCTTTCTCAGCTAGAAAAACAGAGTTCTTGGTTACAAAGATCTTGACTTGCTTGGGAGAGGAAGAGAGAGGAGTTTCTTGCTTTCTTCAGAGGGAAATTGGCTTCTTGGAATCCTAATTAGAGCAAATACATGATATCCTAGGAGATAAACACACACACAAAAATCTAATTGAGGAAACTGATTGCCACTAGCTTCACCAAGAAATGGAGAGGGAGCAGATGAGGATGGCCATCCTGAGGCAAGAACAAACATTCAGACAACAGGTTCATGAGCTGCACAGACTGTACCATGTTCAGAAACAGCTGATGAAACAGATGCAGATCGCCAAGCTGAACCAAGCTCAGGCAATCGCT GCCAACGCCGAAACCAAACCGAAATTCGAGATCACTTTCGCCGAGAATTCAACCAACCATCACCACCACCACCAATTCTACAGCTTCCAGAGCAGCAAGATCATGTCTCCCCCTGCAGCAGCAGCAGCAGCAGC AGATCAAGAAGAGGAAGAAGAATGCGACCT CCAGCTGACGCTGGCGACGGGGAGCAGCGGCGGCGGCGATGGCACGGCGAGGGGGCACAAGGGGAAGAAGGAGGTGAGGTCATCCAACTCGGACTCCGGCACGG CGG CGTCGTCGACGT CGACGGAGT CCG AGCT G GCCCAGTT CAAGAATCATCATCACCATCAGTTGG ACTG CGCGGCGGCGGCGCCGGTGGCGTCGCCGGCGGCGAGGTTCCAGGGCGAGAGCAAGAAGAGGGTGGTCGTCGTCGTGGACAACGAGATGAGCCTCCTCCAGCCTCCATGGCTCAACCAGTGCTTGAGCTTGAGGA ]
[+] EMBL AU057011 [ ACAAAGATCTTGACTTGCTTGGGAGAGGAAGAGAGAGGAGTTTCTTGCTTTCTTCAGAGGGAAATTGGCTTCTTGGAATCCTAATTAGAGCAAATACATGATATCCTAGGAGATAAACACACACACAAAAATCTAATTGAGGAAACTGATTGCCACTAGCTTCACCAAGAAATGGAGAGGGAGCAGATGAGGATGGCCATCCTGAGGCAAGAACAAACATTCAGACAACAGGTTCATGAGCTGCACAGACTGTACCATGTTCAGAAACAGCTGATGAAACAGATGCAGATCGCCAAGCTGAACCAAGCTCAGGCAATCGCTNGCCAACGCCGAAACCAAACCGAAATTCGAGATCACTTTCGCCGAGAATTCAACCAACCATCACCACCACCACCAATTCTACAGCTTCCAGAGCAGCAAGATCATGTCTCCCCCTGCAGCAGCAGCAGCAGCAGC AGATCAAGAAGAGGAAGAAGAATGCGACCT CCAGCTGACGCTGGCGACGGGGAGCAGCGGCGGCGGCGATGGCACGGCGAGGGGGCACAAGGGGAAGAAGGAGGTGAGGTCATCCAANTCGGACTCCGGCACGG CGG CGTCGTCGACGT CGACGGAGT CCG AGCT G GCCCAGTT CAAGAATCATCATCACCATCAGTTGG ACTG CGCGGNGGCGGCGCCGGTGGCGTCG CGGCGGga ]
[+] EMBL BM419378 [ CAGCAGCAGCAGCGAGATCAAGAAGAGGAAGAAGAATGCNACCTGCCAGCTGACGCTGGCGACGGGGAGCAGCGGCGGCGGCGATGGCACGGAGAGGGGGCACAAGGGGAAGAAGGAGGTGAGGTCATCCAACTCGGACTCCGGCACGG CGG CGTCGTCGACGT CGACGGAGT CCG AGCT G GCCCAGTT CAAGAATCATCATCACCATCAGTTGG ACTG CGCGGCGGCGGCGCCGGTGGCGTCGCCGGCGGCGAGGTTCCAGGGCGAGAGCAAGAAGAGGGTGGTCGTCGTCGTGGACAACGAGATGAGCCTCCTCCAGCCTCCATGGCTCAACCAGTGCTTGAGCTTGAGGA ]
[+] EMBL BE230083 [ AATGCAACCT CCAGCTGACGCTGGCGACGGGGAGCAGCGGCGGCGGCGATGGCACGGAGAGGGGGCACAAGGGGAAGAAGGAGGTGAGGTCATCCAACTCGGACTCCGGCACGG CGG CGTCGTCGACGT CGACGGAGT CCG AGCT G GCCCAGTT CAAGAATCATCATCACCATCAGTTGG ACTG CGCGGCGGCGGCGCCGGTGGCGTCGCCGGCGGCGAGGTTCCAGGGCGAGAGCAAGAAGAGGGTGGTCGTCGTCGTGGACAACGAGATGAGCCTCCTCCAGCCTCCATGGCTCAACCAGTGCTTGAGCTTGAGGA ]
[+] EMBL AU082267 [ GGCGAGGGGGCACAAGGGGAAGAAGGAGGTGAGGTCATCCAACTCGGACTCCGGCACGGCCGGNCGTCGTCGACGTCCGACGGAGTCCCGTAGCTNT CCCCAGTTCCAAGAATCATCATCACCATCAGTTGGTACTGNCGCGGCGGCGGCNCCGGTGGCGTCGCCGGCGGCGAGGTTCCAGGGCGAGAGCAAGAAGAGGGTGGTCGTCGTCGTGGACAACGAGATGAGCCTCCTCCAGCCTCCATGGCTCAACCAGTGCTTGAGCTTGAGGA ]
[-] EMBL CF281752 [ GTGAGGTCATCCAACTCGGACTCCGGCACGG CGG CGTCGTCGACGT CGACGGAGT CCG AGCT GNGCCCAGTT CAAGAATCATCATCACCATCAGTTGG ACTG CGCGGCGGCGGCGCCGGTGGCGTCGCCGGCGGCGAGGTTCCAGGGCGAGAGCAAGAAGAGGGTGGTCGTCGTCGTGGACAACGAGATGAGCCTCCTCCAGCCTCCATGGCTCAACCAGTGCTTGAGCTTGAGGATGGCGTGATTAGCTTATAAAATAAAAATTGTAGATTTGTTGCATCGATGAAGAAGAAGAAGAAGAAGAAGAGATCGATCGATCGAGGAGGGATGGATGGATGCTGTTACTTACGTTGTAAATCACAGAGCTAATCTTCTTT ]
[+] EMBL AU076285 [ GCATCGATGAAGAAGAAGAAGAAGAAGAAGAGATCGATCGATCGAGGAGGGATGGATGGATGCTGTTACTTACGTTGTAAATCACAGAGCTAATCTTCTTTTTTTCCTGCAAGAATTGGTAAAGAGATGAACAAA]
consensusID : consensus_13337#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 559 fasta sequence
[TCACTAGATATCATTCATACATAAATGCCAACCTGTTTGCTTTCTCAGCTAGAAAAACAGAGTTYTTGGTTACAAAGATCTTGACTTGCTTGGGAGAGGAAGAGAGAGGAGTTTCTTGCTTTCTTCAGAGGGAAATTGGCTTCTTGGAATCCTAATTAGAGCAAATACATGATATCCTAGGAGATAAACACACACACAAAAATCTAATTGAGGAAACTGATTGCCACTAGCTTCACCAAGAAATGGAGAGGGAGCAGATGAGGATGGCCATCCTGAGGCAAGAACAAACATTCAGACAACAGGTTCATGAGCTGCACAGACTGTACCATGTTCAGAAACAGCTGATGAAACAGATGCAGATCGCCAAGCTGAACCAAGCTCAGGCAATCGCTGCCAACGCCGAAACCAAACCGAAATTCGAGATCACTTTCGCCGAGAATTCAACCAACCATCACCACCACCACCAATTCTACAGCTTCCAGAGCAGCAAGATCATGTCTCCCCCTGCAGCAGCAGATCAAGAAGAGGAAGAAGAATGCGACCTCCAGCTGACGCTGGC]
[+] EMBL CF303805 [TCACTAGATATCATTCATACATAAATGCCAACCTGTTTGCTTTCTCAGCTAGAAAAACAGAGTTCTTGGTTACAAAGATCTTGACTTGCTTGGGAGAGGAAGAGAGAGGAGTTTCTTGCTTTCTTCAGAGGGAAATTGGCTTCTTGGAATCCTAATTAGAGCAAATACATGATATCCTAGGAGATAAACACACACACAAAAATCTAATTGAGGAAACTGATTGCCACTAGCTTCACCAAGAAATGGAGAGGGAGCAGATGAGGATGGCCATCCTGAGGCAAGAACAAACATTCAGACAACAGGTTCATGAGCTGCACAGACTGTACCATGTTCAGAAACAGCTGATGAAACAGATGCAGATCGCCAAGCTGAACCAAGCTCAGGCAATCGCTGCCAACGCCGAAACCAAACCGAAATTCGAGATCACTTTCGCCGAGAATTCAACCAACCATCACCACCACCACCAATTCTACAGCTTCCAGAGCAGCAAGATCATGTCTCCCCCTGCAGCAGCAGATCAAGAAGAGGAAGAAGAATGCGACCTCCAGCTGACGCTGGC]
[+] EMBL BE230717 [ cgrgCATAAATGCCAACCTGTTTGCTTTCTCAGCTAGAAAAACAGAGTYYTGBGTTACAAAGATCTTGACTTGCTTGGGAGAGGAAGAGAGAGGAGTTTCTTGCTTTCTTCAGAGGGAAATTGGCTTCTTGGAATCCTAATTAGAGCAAATACATGATATCCTAGGAGATAAACACACACACAAAAATCTAATTGAGGAAACTGATTGCCACTAGCTTCACCAAGAAATGGAGAGGGAGCAGATGAGGATGGCCATCCTGAGGCAAGAACAAACATTCAGACAACA GATCATGAGCTTCACAGACTGTACCATKTYAAG AACAGCTGATGAAACAGKTGCAGtc ]
[+] EMBL OSS13041A [ AACCTGTTTGCTTTCTCAGCTAGAAAAACAGAGTTNTTGGTTACAAAGATCTTGACTTGCTTGGGAGAGGAAGAGAGAGGAGTTTCTTGCTTTCTTCAGAGGGAAATTGGCTTCTTGGAATCCTAATTAGAGCAAATACATGNTATCCTAGGAGATAAACACACACACAAAAATCTAATTGAGGAAACTGATTGCCACTAGCTTCACCAAGAAATGGAGAGGGAGCAGATGAGGATGGCCATCCTGAGGCAAGAACAAACATTCAGACAACAGGTTCATGAGCTGCACAGACTGTACCATGTTCAGAACCAGCTGATGAAACAGATGCAGATCGCCAAGCTGACCCAAGCTCAGGCAATCGCTGCC ACGCCGGAACC AACCG AATTCGAGATCACTTTTGCCGAGAtt ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13337#0 AGAGAATCTTAAAATCTCTCCTCTCTCTCCAAGTCCCTGCCTCTCACTAGATATCATTCA 60
consensus_13337#1 -------------------------------------------TCACTAGATATCATTCA 17
*****************
consensus_13337#0 TACATAAATGCCAACCTGTTTGCTTTCTCAGCTAGAAAAACAGAGTTCTTGGTTACAAAG 120
consensus_13337#1 TACATAAATGCCAACCTGTTTGCTTTCTCAGCTAGAAAAACAGAGTTYTTGGTTACAAAG 77
*********************************************** ************
consensus_13337#0 ATCTTGACTTGCTTGGGAGAGGAAGAGAGAGGAGTTTCTTGCTTTCTTCAGAGGGAAATT 180
consensus_13337#1 ATCTTGACTTGCTTGGGAGAGGAAGAGAGAGGAGTTTCTTGCTTTCTTCAGAGGGAAATT 137
************************************************************
consensus_13337#0 GGCTTCTTGGAATCCTAATTAGAGCAAATACATGATATCCTAGGAGATAAACACACACAC 240
consensus_13337#1 GGCTTCTTGGAATCCTAATTAGAGCAAATACATGATATCCTAGGAGATAAACACACACAC 197
************************************************************
consensus_13337#0 AAAAATCTAATTGAGGAAACTGATTGCCACTAGCTTCACCAAGAAATGGAGAGGGAGCAG 300
consensus_13337#1 AAAAATCTAATTGAGGAAACTGATTGCCACTAGCTTCACCAAGAAATGGAGAGGGAGCAG 257
************************************************************
consensus_13337#0 ATGAGGATGGCCATCCTGAGGCAAGAACAAACATTCAGACAACAGGTTCATGAGCTGCAC 360
consensus_13337#1 ATGAGGATGGCCATCCTGAGGCAAGAACAAACATTCAGACAACAGGTTCATGAGCTGCAC 317
************************************************************
consensus_13337#0 AGACTGTACCATGTTCAGAAACAGCTGATGAAACAGATGCAGATCGCCAAGCTGAACCAA 420
consensus_13337#1 AGACTGTACCATGTTCAGAAACAGCTGATGAAACAGATGCAGATCGCCAAGCTGAACCAA 377
************************************************************
consensus_13337#0 GCTCAGGCAATCGCTGCCAACGCCGAAACCAAACCGAAATTCGAGATCACTTTCGCCGAG 480
consensus_13337#1 GCTCAGGCAATCGCTGCCAACGCCGAAACCAAACCGAAATTCGAGATCACTTTCGCCGAG 437
************************************************************
consensus_13337#0 AATTCAACCAACCATCACCACCACCACCAATTCTACAGCTTCCAGAGCAGCAAGATCATG 540
consensus_13337#1 AATTCAACCAACCATCACCACCACCACCAATTCTACAGCTTCCAGAGCAGCAAGATCATG 497
************************************************************
consensus_13337#0 TCTCCCCCTGCAGCAGCAGCAGCAGCAGCAGATCAAGAAGAGGAAGAAGAATGCGACCTC 600
consensus_13337#1 TCTCCCCCTGCAGCAGCAG------------ATCAAGAAGAGGAAGAAGAATGCGACCTC 545
******************* *****************************
consensus_13337#0 CAGCTGACGCTGGCGACGGGGAGCAGCGGCGGCGGCGATGGCACGGCGAGGGGGCACAAG 660
consensus_13337#1 CAGCTGACGCTGGC---------------------------------------------- 559
**************
consensus_13337#0 GGGAAGAAGGAGGTGAGGTCATCCAACTCGGACTCCGGCACGGCGGCGTCGTCGACGTCG 720
consensus_13337#1 ------------------------------------------------------------
consensus_13337#0 ACGGAGTCCGAGCTGGCCCAGTTCAAGAATCATCATCACCATCAGTTGGACTGCGCGGCG 780
consensus_13337#1 ------------------------------------------------------------
consensus_13337#0 GCGGCGCCGGTGGCGTCGCCGGCGGCGAGGTTCCAGGGCGAGAGCAAGAAGAGGGTGGTC 840
consensus_13337#1 ------------------------------------------------------------
consensus_13337#0 GTCGTCGTGGACAACGAGATGAGCCTCCTCCAGCCTCCATGGCTCAACCAGTGCTTGAGC 900
consensus_13337#1 ------------------------------------------------------------
consensus_13337#0 TTGAGGATGGCGTGATTAGCTTATAAAATAAAAATTGTAGATTTGTTGCATCGATGAAGA 960
consensus_13337#1 ------------------------------------------------------------
consensus_13337#0 AGAAGAAGAAGAAGAAGAGATCGATCGATCGAGGAGGGATGGATGGATGCTGTTACTTAC 1020
consensus_13337#1 ------------------------------------------------------------
consensus_13337#0 GTTGTAAATCACAGAGCTAATCTTCTTTTTTTCCTGCAAGAATTGGTAAAGAGATGAACA 1080
consensus_13337#1 ------------------------------------------------------------
consensus_13337#0 AA 1082
consensus_13337#1 --
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||