These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13339#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1885 fasta sequence [TTCTCCGACGAAACCCCAATCCCCAACTCCGACGCTTCCTCCGCCCCGGCGATCGCCGCCACCCGAATCCCCCCGCGACCGCCTCCGATTGATTCGATCCGGTGATCTTGTGTTGTTGCCACATGATTGTTGTCTCTAAATGATTCTATGGGGGCCCCGAATGAAGTGACATCGTACTCTTCCCTCTCCAAAATCGATAGCAACAACCAGGGAGGTCATCTATCTAGTCTAGTTCCAGCAAACATTTACCCAGCGCAGGATTATCTCTATGAACCGTCCCTGGAGCCAGATTTCCCATCGGAGTACGATTCTAGAGAAGATCCATTTGTTCCAACACGAGCTAGTTCAAATATCAATTTGAAGACTGTCCTAACT-GGGCTGGCTGCTATTGTTTCGGGCACAAATAA-GAACCAGGATAATACACTGC-AGCAGCAAAGTTTCAGCACGGATGTCTCATTTCTAGGATTTGACAAGGATGGTGATGTTAATGTACATCCATCTGTATGCGTTCCTAGTGCGCCACCACTACTTGAAACAAATGCTTTACAATACAGTGCATACAGGGAGGTGCTACAGGCAGATCCTCCAGAATGGTTACCAGATAGCTCTACCAGTGTGTGCCTGCAATGCAGTTTGCCTTTCACAGCTCTGACTCGTGGAAGGCACCATTGCCGGTTCTGTGGAGGTATTTTCTGTAAAGATTGTTCCAAGGGAAGATGCTTGATGCCCATGAAGTTCAGGCAGCGTGATCCTCAGAGAGTGTGTGATGCTTGCTACGATAGGCTCGATCCACTTCAGGGAATATTGATCAATTACAATAGCAATGCCATGCAGCCAGCAAAACATGATGTTATGGATTGGACAAGCACAAGAAGCTGGTTGAACTTG-CCTGTTGGTTTATCAATGGAGTATGAGATATACAAGGCAACAAATACACTAAATAGATATTGCCAGGTTGCTAGATTAAACCCTGAGAAGTCCATCCCATCATCTATTCTAAAGGGAGCTAAGGGGCTTGCTGTGATAACAGTTGCCAAGGCGGGTGCAGTTCTTACATACAAAGTTGGCACTGGCCTTGTAGTTGCCCGAAGATCAGATGGATCATGGTCTGCCCCATCAGCAATTGCATCTGTTGGCCTGGGATGGGGAGTTCAGTTTGGTGGCGAACTGACAGATTTTATAATTGTACTTCATGATCGTAAGGCTGTCAAGGCATTCAGCAGTCGCATGCATCTTTCTCTTGGGGCAGGATTAAGTGCAGCAGCAGGACCAATTGGCAGGGCCTTTGAAGCAGATGTTAGGGCCAGTGAAAAAGGTTCTGGGCTCTGCTACACTT-ACAGCTGTAGCAAAGGTGCCTTTGTTGGGGTCTCATTGGAAGGAAATGTCGTGACAACCAGATCAGAGACCAATCTACGCTTCTATGGCGATGCTTACTTGACCACAACTGATATCCTGTTTGGGAAGGTGGAGAAACCC-AGAGCCGCCCAGCCCCTGTACTCAGCTCTAGATGATCTATTCTCTAAAATGGTTTACTAG---TTCTACGTGTTCATGCCAAAAAAAAAAAGGAAAAAAAGAAAAGGAAAAGCTCTCCATTACTCATTGATGTACACAATATGTATATAAAGAAAAAGGTAGGAAAATGTACAGCTTTTAAGTCCTGTTCGGATGGGTCGATTTGGGTTAAAATCCCTTGCACGACTTATAGGTTCAAATGTGAAAAAGGTCCCAAAGTATTTTATAATTCAAGTACCCAAATCTGAACAGACCAATTGGATTGTGTTCCACTGATAATCTCTCGGTACACATGT-AAATATTATCATGATATTTCAGGCCCTGTTGTTACTTTATTCTGGACTTGGGCTTTCGTTTGCAAAAAAAAAAAAAA] [+] EMBL AK071047 [TTCTCCGACGAAACCCCAATCCCCAACTCCGACGCTTCCTCCGCCCCGGCGATCGCCGCCACCCGAATCCCCCCGCGACCGCCTCCGATTGATTCGATCCGGTGATCTTGTGTTGTTGCCACATGATTGTTGTCTCTAAATGATTCTATGGGGGCCCCGAATGAAGTGACATCGTACTCTTCCCTCTCCAAAATCGATAGCAACAACCAGGGAGGTCATCTATCTAGTCTAGTTCCAGCAAACATTTACCCAGCGCAGGGTTATCTCTATGAACCGTCCCTGGAGCCAGATTTCCCATCGGAGTACGATTCTAGAGAAGATCCATTTGTTCCAACACGAGCTAGTTCAAATATCAATTTGAAGACTGTCCTAACT GGGCTGGCTGCTATTGTTTCGGGCACAAATAA GAACCAGGATAATACACTGC AGCAGCAAAGTTTCAGCACGGATGTCTCATTTCTAGGATTTGACAAGGATGGTGATGTTAATGTACATCCATCTGTATGCGTTCCTAGTGCGCCACCACTACTTGAAACAAATGCTTTACAATACAGTGCATACAGGGAGGTGCTACAGGCAGATCCTCCAGAATGGTTACCAGATAGCTCTACCAGTGTGTGCCTGCAATGCAGTTTGCCTTTCACAGCTCTGACTCGTGGAAGGCACCATTGCCGGTTCTGTGGAGGTATTTTCTGTAAAGATTGTTCCAAGGGAAGATGCTTGATGCCCATGAAGTTCAGGCAGCGTGATCCTCAGAGAGTGTGTGATGCTTGCTACGATAGGCTCGATCCACTTCAGGGAATATTGATCAATTACAATAGCAATGCCATGCAGCCAGCAAAACATGATGTTATGGATTGGACAAGCACAAGAAGCTGGTTGAACTTG CCTGTTGGTTTATCAATGGAGTATGAGATATACAAGGCAACAAATACACTAAATAGATATTGCCAGGTTGCTAGATTAAACCCTGAGAAGTCCATCCCATCATCTATTCTAAAGGGAGCTAAGGGGCTTGCTGTGATAACAGTTGCCAAGGCGGGTGCAGTTCTTACATACAAAGTTGGCACTGGCCTTGTAGTTGCCCGAAGATCAGATGGATCATGGTCTGCCCCATCAGCAATTGCATCTGTTGGCCTGGGATGGGGAGTTCAGTTTGGTGGCGAACTGACAGATTTTATAATTGTACTTCATGATCGTAAGGCTGTCAAGGCATTCAGCAGTCGCATGCATCTTTCTCTTGGGGCAGGATTAAGTGCAGCAGCAGGACCAATTGGCAGGGCCTTTGAAGCAGATGTTAGGGCCAGGGAAAAAGGTTCTGGGCTCTGCTACACTT ACAGCTGCAGCAAAGGTGCCTTTGTTGGGGTCTCATTGGAAGGAAATGTCGTGACAACCAGATCAGAGACCAATCTACGCTTCTATGGCGATGCTTACTTGACCACAACTGATATCCTGTTTGGGAAGGTGGAGAAACCC AGAGCCGCCCAGCCCCTGTACTCAGCTCTAGATGATCTATTCTCTAAAATGGTTTACTAG TTCTACGTGTTCATGCCAAAAAAAAAAAGGAAAAAAAGAAAAGGAAAAGCTCTCCATTACTCATTGATGTACACAATATGTATATAAAGAAAAAGGTAGGAAAATGTACAGCTTTTAAGTCCTGTTCGGATGGGTCGATTTGGGTTAAAATCCCTTGCACGACTTATAGGTTCAAATGTGAAAAAGGTCCCAAAGTATTTTATAATTCAAGTACCCAAATCTGAACAGACCAATTGGATTGTGTTCCACTGATAATCTCTCGGTACACATGT AAATATTATCATGATATTTCAGGCCCTGTTGT ] [+] EMBL CB642430 [ CCCAATCCCCAACTCCGACGCTTCCTCCGCCCCGGCGATCGCCGCCACCCGAATCCCCCCGCGACCGCCTCCGATTGATTCGATCCGGTGATCTTGTGTTGTTGCCACATGATTGTTGTCTCTAAATGATTCTATGGGGGCCCCGAATGAAGTGACATCGTACTCTTCCCTCTCCAAAATCGATAGCAACAACCAGGGAGGTCATCTATCTAGTCTAGTTCCAGCAAACATTTACCCAGCGCAGGATTATCTCTATGAACCGTCCCTGGAGCCAGATTTCCCATCGGAGTACGATTCTAGAGAAGATCCATTTGTTCCAACACGAGCTAGTTCAAATATCAATTTGAAGACTGTCCTAACT GGGCTGGCTGCTATTGTTTCGGGCACAAATAA GAACCAGGATAATACACTGC AGCAGCAAAGTTTCAGCACGGATGTCTCATTTCTAGGATTTGACAAGGATGGTGATGTTAATGTACATCCATCTGTATGCGTTCCTAGTGCGCCACCACTACTTGAAACAAATGCTTTACAATACAGTGCATACAGGGAGGTGCTACAGGCAGATCCTCCAGAATGGTTACCAGATAGCTCTACCAGTGTGTGCCTGCAATGCAGTTTGCCTTTCACAGCTCTGACTCGTGGAAGGCACCATTGCCGGTTCTGTGGAGGTATTTTCTGTAAAGATTGTTCCAAGGGAAGATGCTTGATGCCCATGAAGTTCAGGCAGCGTGATCCTCAGAGAGTGTGTGATGCTTGCTACGATAGGCTCGATCCACTTCAGGGAATATTGATCAATTACAATAGCAATGCCATGCAGCCAGCAAAACATGATGTT ] [+] EMBL CB644160 [ CCCAATCCCCAACTCCGACGCTTCCTCCGCCCCGGCGATCGCCGCCACCCGAATCCCCCCGCGACCGCCTCCGATTGATTCGATCCGGTGATCTTGTGTTGTTGCCACATGATTGTTGTCTCTAAATGATTCTATGGGGGCCCCGAATGAAGTGACATCGTACTCTTCCCTCTCCAAAATCGATAGCAACAACCAGGGAGGTCATCTATCTAGTCTAGTTCCAGCAAACATTTACCCAGCGCAGGATTATCTCTATGAACCGTCCCTGGAGCCAGATTTCCCATCGGAGTACGATTCTAGAGAAGATCCATTTGTTCCAACACGAGCTAGTTCAAATATCAATTTGAAGACTGTCCTAACT GGGCTGGCTGCTATTGTTTCGGGCACAAATAA GAACCAGGATAATACACTGC AGCAGCAAAGTTTCAGCACGGATGTCTCATTTCTAGGATTTGACAAGGATGGTGATGTTAATGTACATCCATCTGTATGCGTTCCTAGTGCGCCACCACTACTTGAAACAAATGCTTTACAATACAGTGCATACAGGGAGGTGCTACAGGCAGATCCTCCAGAATGGTTACCAGATAGCTCTACCAGTGTGTGCCTGCAATGCAGTTTGCCTTTCACAGCTCTGACTCGTGGAAGGCACCATTGCCGGTTCTGTGGAGGTATTTTCTGTAAAGATTGTTCCAAGGGAAGATGCTTGATGCCCATGAAGTTCAGGCAGCGTGATCCTCAGAGAGTGTGTGATGCTTGCTACGATAGGCTCGATCCACTTCAGGGAATATTGATCAATTACAATAGCAATGCCATGCAGCCA ] [+] EMBL AU062478 [ CCAACTCCGACGCTTCCTCCGCCCCGGCATTCGC CCACCCGAATCCCCCCGCGACCGCCTCCGATTGATTCGATCCGGTGATCTTGTGTTGTTGCCACATGATTGTTGTCTCTAAATGATTCTATGGGGGCCCCGAATGAAGTGACATCGTACTCTTCCCTCTCCAAAATCGATAGCAACAACCAGGGAGGTCATCTATCTAGTCTAGTTCCAGCAAACATTTACCCAGCGCAGGATTATCTCTATGAACCGTCCCTGGAGCCAGATTTCCCATCGGAGTACGATTCTAGAGAAGATCCATTTGTTCCAACACGAGCTAGTTCAAATATCAATTTGAAGACTGTCCTAACTNGGGCTGGCTGCTATTGTTTCGGGCACAAATAAGGAACCAGGGTAATACACTGCAAGCAG AAAGTTTCAGCACGGATGTCTCAATTCTAG ] [+] EMBL CB623974 [ AACTCCCATACATCCTCCGCCCCGGCGATCGCCGCCACCCGAATCCCCCCGCGACCGCCTTCGATTGATTCGATCCGG CCTCTTGTGTTGTTGCCACATGATTGTTGTCTCTAAATGATTCTATGGGGGCCCCGAATGAAGTGACATCGTACTCTTCCCTCTCCAAAATCGATAGCAACAACCAGGGAGGTCATCTATCTAGTCTAGTTCCAGCAAACATTTACCCAGCGCAGGATTATCTCTATGAACCGTCCCTGGAGCCAGATTTCCCATCGGAGTACGATTCTAGAGAAGATCCATTTGTTCCAACACGAGCTAGTTCAAATATCAATTTGAAGACTGTCCTAACT GGGCTGGCTGCTATTGTTTCGGGCACAAATAA GAACCAGGATAATACACTGC AGCAGCAAAGTTTCAGCACGGATGTCTCATTTCTAGGATTTGACAAGGATGGTGATGTTAATGTACATCCATCTGTATGCGTTCCTAGTGCGCCACCACTACTTGAAACAAATGCTTTACAATACAGTGCATACAGGGAGGTGCTACAGGCAGATCCTCCAGAATGGTTACCAGATAGCTCTACCAGTGTGTGCCTGCAATGCAGTTTGCCTTTCACAGCTCTGACTCGTGGAAGGCACCATTGCCGGTTCTGTGGAGGTATTTTCTGTAAAGATTGTTCCAAGGGAAGATGCTTGATGCCCATGAAGTTCAGGCAGCGTGATCCTCAGAGAGTGTGTGATGCTTGCTACGATAGGCTCGATCCACTTCANGGAATATTGATCAATTACAATAGCAA ] [-] EMBL CB642431 [ GCTTGATGCCCATGAAGTTCAGGCAGCGTGATCCTCAGAGAGTGTGTGATGCTTGCTACGATAGGCTCGATCCACTTCAGGGAATATTGATCAATTACAATAGCAATGCCATGCAGCCAGCAAAACATGATGTTATGGATTGGACAAGCACAAGAAGCTGGTTGAACTTG CCTGTTGGTTTATCAATGGAGTATGAGATATACAAGGCAACAAATACACTAAATAGATATTGCCAGGTTGCTAGATTAAACCCTGAGAAGTCCATCCCATCATCTATTCTAAAGGGAGCTAAGGGGCTTGCCGTGATAACAGTTGCCAAGGCGGGTGCAGTTCTTACATACAAAGTTGGCACTGGCCTTGTAGTTGCCCGAAGATCAGATGGATCATGGTCTGCCCCATCAGCAATTGCATCTGTTGGCCTGGGATGGGGAGTTCAGTTTGGTGGCGAACTGACAGATTTTATAATTGTACTTCATGATCGTAAGGCTGTCAAGGCATTCAGCAGTCGCATGCATCTTTCTCTTGGGGCAGGATTAAGTGCAGCAGCAGGACCAATTGGCAGGGCCTTTGAAGCAGATGTTAGGGCCAGTGAAAAAGGTTCTGGGCTCTGCTACACTT ACAGCTGTAGCAAAGGTGCCTTTGTTGGGGTCTCATTGGAAGGAAATGTCGTGACAACCAGATCAGAGACCAATCTACGCTTCTATGGCGATGCTTACTTGACCACAACTGATATCCTGTTTGGGAAGGTGGAGAAACCCAAGAGCCGCCCAGCCCCTGTACTCAGCTCTAGATGATCTATTCTCTAAAATGGTTTACTAG TTCTACGT ] [-] EMBL CB644161 [ AGTTCAGGCAGCGTGATCCTCAGAGAGTGTGTGATGCTTGCTACGATAGGCTCGATCCACTTCAGGGAATATTGATCAATTACAATAGCAATGCCATGCAGCCAGCAAAACATGATGTTATGGATTGGACAAGCACAAGAAGCTGGTTGAACTTG CCTGTTGGTTTATCAATGGAGTATGAGATATACAAGGCAACAAATACACTAAATAGATATTGCCAGGTTGCTAGATTAAACCCTGAGAAGTCCATCCCATCATCTATTCTAAAGGGAGCTAAGGGGCTTGCCGTGATAACAGTTGCCAAGGCGGGTGCAGTTCTTACATACAAAGTTGGCACTGGCCTTGTAGTTGCCCGAAGATCAGATGGATCATGGTCTGCCCCATCAGCAATTGCATCTGTTGGCCTGGGATGGGGAGTTCAGTTTGGTGGCGAACTGACAGATTTTATAATTGTACTTCATGATCGTAAGGCTGTCAAGGCATTCAGCAGTCGCATGCATCTTTCTCTTGGGGCAGGATTAAGTGCAGCAGCAGGACCAATTGGCAGGGCCTTTGAAGCAGATGTTAGGGCCAGTGAAAAAGGTTCTGGGCTCTGCTACACTT ACAGCTGTAGCAAAGGTGCCTTTGTTGGGGTCTCATTGGAAGGAAATGTCGTGACAACCAGATCAGAGACCAATCTACGCTTCTATGGCGATGCTTACTTGACCACAACTGATATCCTGTTTGGGAAGGTGGAGAAACCC AGAGCCGCCCAGCCCCTGTACTCAGCTCTAGATGATCTATTCTCTAAAATGGTTTACTAG TTCTACGT ] [+] EMBL AU092192 [ aAANCTGGTTGAACTTGCCCTGTTGGTTTATCAATGGAGTATGAGATATAC AGGC ACCAATACACTAAATAGATATTGCCAGGTTGCTAGATT AACCCTGAGAAGTCCATCCCATCATCTATTCTAAAGGGAGCTAAGGGGCTTGCTGTGATAACAGTTGCCAAGGCGGGTGCAGTTCTTACATACAAAGTTGGCACTGGCCTTGTAGTTGCCCGAAGATCAGATGGATCATGGTCTGCCCCATCAGCAATTGCATCTGTTGGCCTGGGATGGGGAGTTCAGTTTGGTGGCGAACTGACAGATTTTATAATTGTACTTCATGATCGTAAGGCTGTCAAGGCATTCAGCAGTCGCATGCATCTTTCTCTTGGGGCAGGATTAAGTGCAGCAGCAGGACCAATTGGCAGGGCCTTTGAAGCAGATGTTAGGGCCAGTGAAAAAGGTTCTGGGCTCTGCTACACTT ACAGCTGTAGCAAAGGTGCCTTTGTTGGGGTCTCATTGGAAGGAAATGTCGTGACAACCAGATCAGAGACCAATCTACGCTTCTATGGCGATGCTTACTTGACCACAACTGATATCCTGTTTGGGAAGGTGGAGAAACCC AGAGCCGCCCAGCCCCTGTACTCAGCTCTAGATGATCTATTCTCTAAAATGGTTTACTAG TTCTACGTGTTCATGCCAAAAAAAAAAA AAAA ] [-] EMBL CB623975 [ GCAATTGCATCTGTTGGCCTGGGAGGGGGAGTTCAGTTTGGTGGCGAACTGACAGATTTTATAATTGTACTTCATGATCGTAAGGCTGTCAAGGCATTCAGCAGTCGCATGCATCTTTTTCTTGGGGCAGGATTAAGTGCAGCAGCAGGACCAATTGGCAGGGCCTTTGAAGCAGATGTTAGGGCCAGTGAAAAAGGTTTTGGGCTTTGTTACACTT ACAGCTGTAGCAAAGGTGCCTTTGTTGGGGTCTCATTGGAAGGAAATGTCGTGCCAACAAGATCAGAGACCAATTTACGCTTTTATGGCGATGGTTACTTGCCCACAACTGATATCCTGTTTGGGAAGGTGGAGAAACCC AGAGCCGCCCAGCCCCTGTAATCAGCTTTAGAGGATTTATTTTTTAAAAGGGTTTACTAGTTTTTTTACGTGTTCATGCC AAAAAAAAAAGGAAAAAAAGAAAAGGAAAAGCTTTCCATTACTCATTGATGTACGCAATATGTATATAAAAAAAAAGGTAGGAAAATGTACAGCTTTTAAGTCCTGTTCGGATGGGTCGATTTGGGTTAAAATCCCTTGCACGACTTATAGGTTCAAATGTGAAAAAGGTCCCAAAGTATTTTATAATTCAAGTACCCAAATTTGAACAGACCAATTGGATTGTGTTCCACTGATAATCTCTCGGTACACATGTAAAATTTTATCATGATATTTGGGGCCCTGT ] [-] EMBL CA763286 [ AGGCTGTCAAGGCATTCAGCAGTNGCATGCATCTTTCTCTTGGGCCAGGATT AGTCCAGCAGCAGGCCCAATTGGCAGGGCCTTTAACCCAGATGTTAGGGGCAGTGAAAAAGGTTTTGGGCTCTGCTACACTTCAC GCTGTAGCAAAGGTGCCTTTGTTGGGGTCTCATCGGAAGGAAATGTCGTGACAACAAGATCAGAGACCAATTTACGCTTCTATGGCGATGCTTACTTGACCACAACTGATATCCTGTTTGGGAAGGTGGAGAAACCC AGAGCCGCCCAGCCCCTGTACTCAGCTCTAGATGATCTATTCTCTAAAATGGTTTACTAGTTTTTCTACGTGTTCATGCC AAAAAAAAAGGAAAAAAAGAAAAGGAAAAGCTCTCCATTACTCATTGATGTACACAATATGTATATAAA AAAAAGGTAGGAAAATGTACAGCTTTTAAGTCCTGTTTGGATGGGTCGATTTGGGTTAAAATCCCTTGCACGACTTATAGGTTCAAATGTGAAAAAGGTCCCAAAGTATTTTATAATTCAAGTACCCAAATCTGAACAGACCAATTGGATTGTGTTCCACTGATAATCTCTCGGTACACATGT AAATATTATCATGATATTTCAGGCCCTGTTGTTACTTTATTCTGGACTTGGGCTTTCGTTTGCAAAAAAAAAAAAAA] [+] EMBL AU076219 [ aaGCAGGGCCTTTGAAGCAGATGTTAGGGCCAGTGAAAAAGGTTCTGGGCTCTGCTACACTT ACAGCTGTAGCAAAGGTGCCTTTGTTGGGGTCTCATTGGAAGGAAATGTCGTGACAACCAGATCAGAGACCAATCTACGCTTCTATGGCGATGCTTACTTGACCACAACTGATATCCTGTTTGGGAAGGTGGAGAAACCC AGAGCCGCCCAGCCCCTGTACTCAGCTCTAGATGATCTATTCTCTAAAATGGTTTACTAG TTCTACGTGTTCATGCCAAAAAAAAAAAGGAAAAAAAGAAAAGGAAAAGCTCTCCATTACTCATTGATGTACACAATATGTATATAAAGAAAAAGGTAGGAAAATGTACAGCTTTTAAGTCCTGTTCGGATGGGTCGATTTGGGTTAAAATCCCTTGCACGACTTATAGGTTCAAATGTGAAAAAGGTCCCAAAGTATTTTATAATTCAAGTACCCAAATCTGAACAGACCAATTGGATTGTGTTCCACTGATAAnaa ] [+] EMBL BI799826 [ AAGGAAAAGCTCTCCATTACTCATTGATGTACACAATATGTATATAAAAATAAAGGTAGGAAAATGTACAGCTTTTAAGTCCTGTTCGGATGGGTCGATTTGGGTTAAAATCCCTTGCACGACTTATAGGTTCAAATGTGAAAAAGGTCCCAAAGTATTTTATAATTCAAGTACCCAAATCTGAACAGACCCATTGGATTGTGTTCCCCTGATAATCTCTCGGTACACATGT AAATATTATCATGATATTTCAaaaa ] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||