These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13347#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1694 fasta sequence [CGGCGGCGACGCGGTGCTGTTCATCGGCGACCTGTCGTACGCGGACAACCACCCGGGGCACGACAACAACCGGTGGGACACGTGGGCGCGGTTCGTGGAGCGGAGCGTGGCGTACCAGCCGTGGATCTGGACGACGGGGAACCACGAGCTGGACTTCGCGCCGGAGCTGGGGGAGACGACGCCGTTCAAGCCGTTCACGAACAGGTACCCGACGCCGTTCGGGGCGTCGGGGAGCACGCGGCCGCTGTGGTACTCGGTGAGGATGGCGTCGGCGCACGTGATCGTGCTGGCGTCGTACGCGGCGTACGGCAAGTACACGCCGCAGTGGAGGTGGTTGGAGGGGGAGCTGAGGCGCGTGGACAGGGCGGTGACGCCATGGCTGATCGTGTGCGTGCACTCGCCGTGGTACAGCAGCAACGGATACCACTACATGGAGGGGGAGTCGATGCGCGTGGAGTTCGAGCGGTGGCTCGTCGACGCCAAGGCCGACGTGGTGCTCGCCGGGCACGTCCACTCGTACGAGCGGACGCGGCGGGTGTCGAACGTGGCGTACGACATCGCCAACGGGATGGCGACGCCGGTGTTCAACCGGTCGGCGCCGGTGTACATCAACATCGGCGACGGGGGGAACATCGAGGGGCTCGCCGACGACTTCCGGTGGCCGCAGCCGGACTACTCGGTGTTCCGGGAGGCCAGCTTCGGCCAAGGCACGCTGCAGATCGTCAACCGGACGCACGCCTTCTACGAGTGGCACCGCAACAGCGACGGCGTCAAGGTCGTCGCCGACCATGCCTGGTTCACCAACCGATACTGGTTTCCCACCGACACCAACTAGCTACCCTTAATTTCCTACGGCCTACTTCCTCTGTCATGTAAAAAACCAATCTATACTAGTATAGGATATGATATATTCTAGTACTACGAATATAGATATACATCTATTCAGATTCATCGTATAAGAATATGTCGCATCCGATTCTAGATTCGTTTTCCGCGGGACGGAGAAAATACCTGCTTAATTTTTTCTTTATTACTAGTACTTTTCTTTTTCTAGATTTCGACCTGAATTCTATTTAGTACGAATGCATCAACAGCAAAACAGATTAGCACACTAGAGAGGGAGATGGATTAATAAAATCATTCGGTTCTGTTTGGAGTTTGCTAGTATAATATATTCTTGGTTCTGTTTGGAGTTTGCTATAATATATTCTTTCTTGACGAATTATCTCCATTCGTAAGCGTGCGTTATCCTCGCCTCAACTAATATTGGAATTACAGTTCTTCTGTCCAGAATAGTAGCTTGGCTATCCCTTTGTCTTTTGCTCTGCCGAATAAAACAGCAACTGCAGTTGTTACACAATTTTTCTAAAAAAATCTTAGTCCAAATTCCGAAACAATTCATTCTACTACTTGGGACCTGGGAGTGGAAAAGCAGTTCTGACTGAATAATTCATACGCGTGATAAATTGGGATATTGAGAGCCGTATAGCGAATCAGAATTTTGATATAACGTACTGAATGAACAAGAATGACCTCTGTATTGGGCATATCCGCATATGGCAATTTGTCGACCATCATGGAACAGTTTGATCAAGTTGATGGCATGCGTTTTTAGAGAAAGTTGATGCAATGCACTGGAAATGTAATGTTGTACTCCAAACAGAATTGGGCAAGCCCTGATATGCTATTCCGCC] [-] EMBL CB633866 [CGGCGGCGACGCGGTGCTGTTCATCGGCGACCTGTCGTACGCGGACAACCACCCGGGGCACGACAACAACCGGTGGGACACGTGGGCGCGGTTCGTGGAGCGGAGCGTGGCGTACCAGCCGTGGATCTGGACGACGGGGAACCACGAGCTGGACTTCGCGCCGGAGCTGGGGGAGACGACGCCGTTCAAGCCGTTCACGAACAGGTACCCGACGCCGTTCGGGGCGTCGGGGAGCACGCGGCCGCTGTGGTACTCGGTGAGGATGGCGTCGGCGCACGTGATCGTGCTGGCGTCGTACGCGGCGTACGGCAAGTACACGCCGCAGTGGAGGTGGTTGGAGGGGGAGCTGAGGCGCGTGGACAGGGCGGTGACGCCATGGCTGATCGTGTGCGTGCACTCGCCGTGGTACAGCAGCAACGGATACCACTACATGGAGGGGGAGTCGATGCGCGTGGAGTTCGAGCGGTGGCTCGTCGACGCCAAGGCCGACGTGGTGCTCGCCGGGCACGTCCACTCGTACGAGCGGACGCGGCGGGTGTCGAACGTGGCGTACGACATCGCCAACGGGATGGCGACGCCGGTGTTCAACCGGTCGGCGCCGGTGTACATCAACATCGGCGACGGGGGGAACATCGAGGGGCTCGCCGACGACTTCCGGTGGCCGCAGCCGGACTACTCGGTGTTCCGGGAGGCCAGCTTCGGCCAAGGCACGC ] [+] EMBL CA766800 [ GGGGCTCGCCGACGACTTCCGGTGGCCGCAGCCGGACTACTCGGTGTTCCGGGAGGCCAGCTTCGGCCACGCCACGCTGCAGATCGTCAACCGGACGCACGCCTTCTACGAGTGGCACCGCAACAGCGACGGCGTCAAGGTCGTCGCCGACCATGCCTGGTTCACCAACCGATACTGGTTTCCCACCGACACCAACTAGCTACCCTTAATTTCCTACGGCCTACTTCCTCTGTCATGTAAAAAACCAATCTATACTAGTATAGGATATGATATATTCTAGTACTACGAATATAGATATACATCTATTCAGATTCATCGTATAAGAATATGTCGCATCCGATTCTAGATTCGTTTTCCGCGGGACGGAGAAAATACCTGCTTAATTTTTTCTTTATTACTAGTACTTTTCTTTTTCTAGATTTCGACCTGAATTCTATTTAGTACGAATGCATCAACAGCAAAACAGATTAGCACACTAGAGAGGGAGATGGATTAATAAAATCATTCGGTTCTGTTTGGAGTT ] [+] EMBL AK119972 [ ACAGCAAAACAGATTAGCACACTAGAGAGGGAGATGGATTAATAAAATCATTCGGTTCTGTTTGGAGTTTGCTAGTATAATATATTCTTGGTTCTGTTTGGAGTTTGCTATAATATATTCTTTCTTGACGAATTATCTCCATTCGTAAGCGTGCGTTATCCTCGCCTCAACTAATATTGGAATTACAGTTCTTCTGTCCAGAATAGTAGCTTGGCTATCCCTTTGTCTTTTGCTCTGCCGAATAAAACAGCAACTGCAGTTGTTACACAATTTTTCTAAAAAAATCTTAGTCCAAATTCCGAAACAATTCATTCTACTACTTGGGACCTGGGAGTGGAAAAGCAGTTCTGACTGAATAATTCATACGCGTGATAAATTGGGATATTGAGAGCCGTATAGCGAATCAGAATTTTGATATAACGTACTGAATGAACAAGAATGACCTCTGTATTGGGCATATCCGCATATGGCAATTTGTCGACCATCATGGAACAGTTTGATCAAGTTGATGGCATGCGTTTTTAGAGAAAGTTGATGCAATGCACTGGAAATGTAATGTTGTACTCCAAACAGAATTGGGCAAGCCCTGATATGCTATTCCGCC] consensusID : consensus_13347#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1600 fasta sequence [AGAGTAGCACAAGAAGCAGAGTGCGGCTAGCTCACAGTCACCATGGGGATGCTGCGGTGGGGAGCTCACCTCCTCCTCCTCCTCCTCGCCGCGGCGACGTGGACGTGCGCCGGCGCCGGCGCCGG-GGTGACGAGCGAGTACCGGCGGAAGCTGGAGGCGACGGTGGACATGCCGCTCGACGCCGACGTCTTCCGCGTGCCGCCGGGCTACAATGCTCCGCAGCAGGTGCACATCACGCTGGGGGACCAGACGGGGACGGCGATGACGGTGTCGTGGGTGACGGCGAACGAGCTGGGGAGCAACACGGTCAGGTACGGGAGC-TCGCCGGAGAAGC-TGGACCGCGCGGCGGAGGGGAGCCACACGAGGTACGACTA-CTTCAACTAC-ACCTCCGGCTTCATCCACCACTGCACCCTCACCGGCCTCACCCACGCCACCAAGTACTACTACGCCATGGGCTTCGATCACACCGTCCGTACCTTCTCCTTCACCACGCCGCCCAAGCCCGCTCCCGACGCCCCCTTCAAGTTCGGCCTCATCGGTGACCTCGGGCAGACGTTCGACTCGAACAGCACGCTGGCGCACTACGAGGCCAACGGCGGCGACGCCGT-CCTCTTCGTCGGCGACCTCTCCTACGCCGACAACTACCCTCTCCACGACAACAACCGCTGGGACACGTGGGCGCGCTTCGTCGAGCGCAGCGTCGCGTACCAGCCATGGATCTGGACCGCCGGCAACCACGAGCTGGACTACGCGCCGGAGCTGGGCGAGACGGTCCCCTTCAAGCCCTTCACCCACCGGTACCCGACGCCGTACCGCGCCGCCGGCAGCACGGAGCCGTTCTGGTACTCCGTCAAGATCGCCTCCGCGCACGTCATCGTGCTGGCCTCCTACTCCGCCTACGGCAAGTACA-CGCCGCAGTGGACATGGCTGCAGGAGGAGCTCGCCACCCGCGTCGACCGCAAGCTCACCCCGTGGCTCATCGTGCTCATGCACTCGCCGTGGTACAACAGCAACAACTACCACTACATGGAGGGGGAGACGATGCGCGTCCAGTTCGAGCGGTGGCTCGTCGACGCCAAGGTGGACGTGGTGCTCGCCGGCCACGTCCACTCGTACGAGCGCAGCCGGAGGTTCGCGAACATCGACTACAACATCGTGAACGGCAAGGCGACGCCGGCGGCGAACGTGGACGCGCCGGTGTACATCACGATCGGCGACGGGGGGAACATCGAGGGGATCGCCAACAACTTCACGGTGCCGCAGCCGGCCTACTCGGCGTTCCGGGAGGCCAGCTTCGGCCACGCCACGCTGGAGATCAAGAACCGGACGCACGCGCACTACGCGTGGCACCGCAACCACGACGGCGCCAAGGCCGTCGCCGACGCCGTCTGGCTCACCAACCGCTACTGGATGCCCACCAACGACGATGTATAATTATTAATCGACTCCAACCATCTCAAACTTCTTAATTTGTATCACTGCTATGCTATTGCCATTCTTCTTCTTCTTTAGCTTTGGATAATAAATACTCCTACTATGCAATAACAAATACTACTAGCAGAGTCTATCTTGTTAAGCCGTGAGATAATTAATCCCCAAA] [+] EMBL AK066273 [AGAGTAGCACAAGAAGCAGAGTGCGGCTAGCTCACAGTCACCATGGGGATGCTGCGGTGGGGAGCTCACCTCCTCCTCCTCCTCCTCGCCGCGGCGACGTGGACGTGCGCCGGCGCCGGCGCCGG GGTGACGAGCGAGTACCGGCGGAAGCTGGAGGCGACGGTGGACATGCCGCTCGACGCCGACGTCTTCCGCGTGCCGCCGGGCTACAATGCTCCGCAGCAGGTGCACATCACGCTGGGGGACCAGACGGGGACGGCGATGACGGTGTCGTGGGTGACGGCGAACGAGCTGGGGAGCAACACGGTCAGGTACGGGAGC TCGCCGGAGAAGC TGGACCGCGCGGCGGAGGGGAGCCACACGAGGTACGACTA CTTCAACTAC ACCTCCGGCTTCATCCACCACTGCACCCTCACCGGCCTCACCCACGCCACCAAGTACTACTACGCCATGGGCTTCGATCACACCGTCCGTACCTTCTCCTTCACCACGCCGCCCAAGCCCGCTCCCGACGCCCCCTTCAAGTTCGGCCTCATCGGTGACCTCGGGCAGACGTTCGTCTCGAACAGCACGCTGGCGCACTACGAGGCCAACGGCGGCGACGCCGT CCTCTTCGTCGGCGACCTCTCCTACGCCGACAACTACCCTCTCCACGACAACAACCGCTGGGACACGTGGGCGCGCTTCGTCGAGCGCAGCGTCGCGTACCAGCCATGGATCTGGACCGCCGGCAACCACGAGCTGGACTACGCGCCGGAGCTGGGCGAGACGGTCCCCTTCAAGCCCTTCACCCACCGGTACCCGACGCCGTACCGCGCCGCCGGCAGCACGGAGCCGTTCTGGTACTCCGTCAAGATCGCCTCCGCGCACGTCATCGTGCTGGCCTCCTACTCCGCCTACGGCAAGTACA CGCCGCAGTGGACATGGCTGCAGGAGGAGCTCGCCACCCGCGTCGACCGCAAGCTCACCCCGTGGCTCATCGTGCTCATGCACTCGCCGTGGTACAACAGCAACAACTACCACTACATGGAGGGGGAGACGATGCGCGTCCAGTTCGAGCGGTGTCTCGTCGACGCCAAGGTGGACGTGGTGCTCGCCGGCCACGTCCACTCGTACGAGCGCAGCCGGAGGTTCGCGAACATCGACTACAACATCGTGAACGGCAAGGCGACGCCGGCGGCGAACGTGGACGCGCCGGTGTACATCACGATCGGCGACGGGGGGAACATCGAAGGGATCGCCAACAACTTCACGGTGCCGCAGCCGGCCTACTCGGCGTTCCGGGAGGCCAGCTTCGGCCACGCCACGCTGGAGATCAAGAACCGGACGCACGCGCACTACGCGTGGCACCGCAACCACGACGGCGCCAAGGCCGTCGCCGACGCCGTCTGGCTCACCAACCGCTACTGGATGCCCACCAACGACGATGTATAATTATTAATCGACTCCAACCATCTCAAACTTCTTAATTTGTATCACTGCTATGCTATTGCCATTCTTCTTCTTCTTTAGCTTTGGATAATAAATACTCCTACTATGCAATAACAAATACTACTAGCAGAGTCTATCTTGTTAAGCCGTGAGATAATTAATCCCCAA ] [+] EMBL AK058368 [ GAGTAGCACAAGAAGCAGAGTGCGGCTAGTTCACAGTCACCATGGGGATGCTGCGGTGGGGAGCTCACCTCCTCCTCCTCCTCCTCGCCGCGGCGACGTGGACGTGCGCCGGCGCCGGCGCCGG GGTGACGAGCGAGTACCGGCGGAAGCTGGAGGCGACGGTGGACATGCCGCTCGACGCCGACGTCTTCCGCGTGCCGCCGGGCTACAATGCTCCGCAGCAGGTGCACATCACGCTGGGGGACCAGACGGGGACGGCGATGACGGTGTCGTGGGTGACGGCGAACGAGCTGGGGAGCAACACGGTCAGGTACGGGAGC TCGCCGGAGAAGC TGGACCGCGCGGCGGAGGGGAGCCACACGAGGTACGACTA CTTCAACTAC ACCTCCGGCTTCATCCACCACTGCACCCTCACCGGCCTCACCCACGCCACCAAGTACTACTACGCCATGGGCTTCGATCACACCGTCCGTACCTTCTCCTTCACCACGCCGCCCAAGCCCGCTCCCGACGCCCCCTTCAAGTTCGGCCTCATCGGTGACCTCGGGCAGACGTTCGACTCGAACAGCACGCTGGCGCACTACGAGGCCAACGGCGGCGACGCCGT CCTCTTCGTCGGCGACCTCTCCTACGCCGACAACTACCCTCTCCACGACAACAACCGCTGGGACACGTGGGCGCGCTTCGTCGAGCGCAGCGTCGCGTACCAGCCATGGATCTGGACCGCCGGCAACCACGAGCTGGACTACGCGCCGGAGCTGGGCGAGACGGTCCCCTTCAAGCCCTTCACCCACCGGTACCCGACGCCGTACCGCGCCGCCGGCAGCACGGAGCCGTTCTGGTACTCCGTCAAGATCGCCTCCGCGCACGTCATCGTGCTGGCCTCCTACTCCGCCTACGGCAAGTACA CGCCGCAGTGGACATGGCTGCAGGAGGAGCTCGCCACCCGCGTCGACCGCAAGCTCACCCCGTGGCTCATCGTGCTCATGCACTCGCCGTGGTACAACAGCAACAACTACCACTACATGGAGGGGGAGACGATGCGCGTCCAGTTCGAGCGGTGGCTCGTCGACGCCAAGGTGGACGTGGTGCTCGCCGGCCACGTCCACTCGTACGAGCGCAGCCGGAGGTTCGCGAACATCGACTACAACATCGTGAACGGCAAGGCGACGCCGGCGGCGAACGTGGACGCGCCGGTGTACATCACGATCGGCGACGGGGGGAACATCGAGGGGATCGCCAACAACTTCACGGTGCCGCAGCCGGCCTACTCGGCGTTCCGGGAGGCCAGCTTCGGCCACGCCACGCTGGAGATCAAGAACCGGACGCACGCGCACTACGCGTGGCACCGCAACCACGACGGCGCCAAGGCCGTCGCCGACGCCGTCTGGCTCACCAACCGCTACTGGATGCCCACCAACGACGATGTATAATTATTAATCGACTCCAACCATCT ] [+] EMBL AB066561 [ GAGTGCGGCTAGCTCACAGTCACCATGGGGATGCTGCGGTGGGGAGCTCACCTCCTCCTCCTCCTCCTCGCCGCGGCGACGTGGACGTGCGCCGGCGCCGGCGCCGG GGTGACGAGCGAGTACCGGCGGAAGCTGGAGGCGACGGTGGACATGCCGCTCGACGCCGACGTCTTCCGCGTGCCGCCGGGCTACAATGCTCCGCAGCAGGTGCACATCACGCTGGGGGACCAGACGGGGACGGCGATGACGGTGTCGTGGGTGACGGCGAACGAGCTGGGGAGCAACACGGTCAGGTACGGGAGC TCGCCGGAGAAGC TGGACCGCGCGGCGGAGGGGAGCCACACGAGGTACGACTA CTTCAACTAC ACCTCCGGCTTCATCCACCACTGCACCCTCACCGGCCTCACCCACGCCACCAAGTACTACTACGCCATGGGCTTCGATCACACCGTCCGTACCTTCTCCTTCACCACGCCGCCCAAGCCCGCTCCCGACGCCCCCTTCAAGTTCGGCCTCATCGGTGACCTCGGGCAGACGTTCGACTCGAACAGCACGCTGGCGCACTACGAGGCCAACGGCGGCGACG CGTCCCTCTTCGTCGGCGACCTCTCCTACGCCGACAACTACCCTCTCCACGACAACAACCGCTGGGACACGTGGGCGCGCTTCGTCGAGCGCAG CGCGTACCAGCCATGGATCTGGACCGCCGGCAACCACGAGCTGGACTACGCGCCGGAGCTGGGCGAGACGGTCCCCTTCAAGCCCTTCACCCACCGGTACCCGACGCCGTACCGCGCCGCCGGCAGCACGGAGCCGTTCTGGTACTCCGTCAAGATCGCCTCCGCGCACGTCATCGTGCTGGCCTCCTACTCCGCCTACGGCAAGTACA CGCCGCAGTGGACATGGCTGCAGGAGGAGCTCGCCACCCGCGTCGACCGCAAGCTCACCCCGTGGCTCATCGTGCTCATGCACTCGCCGTGGTACAACAGCAACAACTACCACTACATGGAGGGGGAGACGATGCGCGTCCAGTTCGAGCGGTGGCTCGTCGACGCCAAGGTGGACGTGGTGCTCGCCGGCCACGTCCACTCGTACGAGCGCAGCCGGAGGTTCGCGAACATCGACTACAACATCGTGAACGGCAAGGCGACGCCGGCGGCGAACGTGGACGCGCCGGTGTACATCACGATCGGCGACGGGGGGAACATCGAGGGGATCGCCAACAACTTCACGGTGCCGCAGCCGGCCTACTCGGCGTTCCGGGAGGCCAGCTTCGGCCACGCCACGCTGGAGATCAAGAACCGGACGCACGCGCACTACGCGTGGCACCGCAACCACGACGGCGCCAAGGCCGTCGCCGACGCCGTCTGGCTCACCAACCGCTACTGGATGCCCACCAACGACGATGTATAATTATTAATCGACTCCAACCATCTCAAACTTCTTAATTTGTATCACTGCTATGCTATTGCCATTCTTCTTCTTCTTTAGCTTTGGATAATAAATACTCCTACTATGCAATAACAAATACTACTAGCAGAGTCTATCTTGTTAAGCCGTGAGATAATTAATCCCCAA ] [+] EMBL AU065845 [ GAGTGCGGCTAGCTCACAGTCACCATGGGGATGCTGCGGTGGGGAGCTCACCTCCTCCTCCTCCTCCTCGCCGCGGCGACGTGGACGTGCGCCGGCGCCGGCGCCGGNGGTGACGAGCGANTACCGGCGGAAGCTGGAGGCGACGGTGGACATGCCGCTCGACGCCGACGTCTTCCGCNTGCCGCCGGGCTACAATNCTCCGCAGCAGGTGCACATCACGCTGGGGGACCAGACGGGGACGGCGATGACGGTNTCGTGGGTNACGGCGAACGAGCTGGGGAGCAACACGGTCAGGTACGGGAGCTTCGCCGGAGAAGCTTGGACCGCGCGGCGGAGGGGAGCCACACGAGGTACGACTANTTTAAATTACAACTTCCGGTTTCATCCACCANTTCAACCTtaac ] [+] EMBL CB655358 [ TCCTCCTCCTCGCCGCGGCGACGTGGACGTGCGCCGGCGCCGGCGCCGG GGTGACGAGCGAGTACCGGCGGAAGCTGGAGGCGACGGTGGACATGCCGCTCGACGCCGACGTCTTCCGCGTGCCGCCGGGCTACAATGCTCCGCAGCAGGTGCACATCACGCTGGGGGACCAGACGGGGACGGCGATGACGGTGTCGTGGGTGACGGCGAACGAGCTGGGGAGCAACACGGTCAGGTACGGGAGC TCGCCGGATATTC TGGACCGCGCGGCGGAGGGGAGCCACACGAGGTACGACTA CTTCAACTAC ACCTCCGGCTTCATCCACCACTGCACCCTCACCGGCCTCACCCACGCCACCAAGTACTACTACGCCATGGGCTTCGATCACACCGTCCGTACCTTCTCCTTCACCACGCCGCCCAAGCCCGCTCCCGACGCCCCCTTCAAGTTCGGCCTCATCGGTGACCTCGGGCAGACGTTCGACTCGAACAGCACGCTGGCGCACTACGAGGCCAACGGCGGCGACGCCGT CCTCTTCGTCGGCGACCTCTCCTACGCCGACAACTACCCTCTCCACGACAACAACCGCTGGGACAC ] [+] EMBL CF323881 [ TCGATCACACCGTCCGTACCTTCTCCTTCACCACGCCGCCCAAGCCCGCTCCCGACGCCCCCTTCAAGTTCGGCCTCATCGGTGACCTCGGGCAGACGTTCGACTCGAACAGCACGCTGGCGCACTACGAGGCCAACGGCGGCGACGCCGT CCTCTTCGTCGGCGACCTCTCCTACGCCGACAACTACCCTCTCCACGACAACAACCGCTGGGACACGTGGGCGCGCTTCGTCGAGCGCAGCGTCGCGTACCAGCCATGGATCTGGACCGCCGGCAACCACGAGCTGGACTACGCGCCGGAGCTGGGCGAGACGGTCCCCTTCAAGCCCTTCACCCACCGGTACCCGACGCCGTACCGCGCCGCCGGCAGCACGGAGCCGTTCTGGTACTCCGTCAAGATCGCCTCCGCGCACGTCATCGTGCTGGCCTCCTACTCCGCCTACGGCAAGTACACCGCCGCAGTGGACATGGCTGCAGGAGGAGCTCGCCACCCGCGTCGACCGCAAGCTCACCCCGTGGCTCATCGT ] [-] EMBL CB674911 [ GCAGCACGGAGCCGTTCTGGTACTCCGTCAAGATCGCCTCCGCGCACGTCATCGTGCTGGCCTCCTACTCCGCCTACGGCAAGTACA CGCCGCAGTGGACATGGCTGCAGGAGGAGCTCGCCACCCGCGTCGACCGCAAGCTCACCCCGTGGCTCATCGTGCTCATGCACTCGCCGTGGTACAACAGCAACAACTACCACTACATGGAGGGGGAGACGATGCGCGTCCAGTTCGAGCGGTGGCTCGTCGACGCCAAGGTGGACGTGGTGCTCGCCGGCCACGTCCACTCGTACGAGCGCAGCCGGAGGTTCGCGAACATCGACTACAACATCGTGAACGGCAAGGCGACGCCGGCGGCGAACGTGGACGCGCCGGTGTACATCACGATCGGCGACGGGGGGAACATCGAGGGGATCGCCAACAACTTCACGGTGCCGCAGCCGGCCTACTCGGCGTTCCGGGAGGCCAGCTTCGGCCACGCCACGCTGGAGATCAAGAACCGGACGCACGCGCACTACGCGTGGCACCGCAACCACGACGGCGCCAAGGCCGTCGCCGACGCCGTCTGGCTCACCAACCGCTACTGGATGCCCACCAACGACGATGTATAATTATTAATCGACTCCAACCATCTCAAACTTCTTAATTTGTATCACTGCTATGCTATTGCCATTCTTCTTCTTCTTTAGCTTTGGATAATAAATACTCCTACTAGGCAATAACAAATACTACTAGCAGAGTCTATCT ] [-] EMBL CB655359 [ CCGCGCACGTCATCGTGCTGGCCTCCTACTCCGCCTACGGCAAGTACA CGCCGCAGTGGACATGGCTGCAGGAGGAGCTCGCCACCCGCGTCGACCGCAAGCTCACCCCGTGGCTCATCGTGCTCATGCACTCGCCGTGGTACAACAGCAACAACTACCACTACATGGAGGGGGAGACGATGCGCGTCCAGTTCGAGCGGTGGCTCGTCGACGCCAAGGTGGACGTGGTGCTCGCCGGCCACGTCCACTCGTACGAGCGCAGCCGGAGGTTCGCGAACATCGACTACAACATCGTGAACGGCAAGGCGACGCCGGCGGCGAACGTGGACGCGCCGGTGTACATCACGATCGGCGACGGGGGGAACATCGAGGGGATCGCCAACAACTTCACGGTGCCGCAGCCGGCCTACTCGGCGTTCCGGGAGGCCAGCTTCGGCCACGCCACGCTGGAGATCAAGAACCGGACGCACGCGCACTACGCGTGGCACCGCAACCACGACGGCGCCAAGGCCGTCGCCGACGCCGTCTGGCTCACCAACCGCTACTGGATGCCCACCAACGACGATGTATAATTATTAATCGACTCCAACCATCTCAAACTTCTTAATTTGTATCACTGCTATGCTATTGCCATTCTTCTTCTTCTTTAGCTTTGGATAATAAATACTCCTACTATGCAATAACAAATACTACTAGCAGAGTCTATCTTGTTAAGCCGTGAGATAATTAATCCCCAAA] consensusID : consensus_13347#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 588 fasta sequence [ATCCNCGGATTTTGGCCNCNATCCNNGAAAACCAGGANGNGGGGGTTCCACCGTTGCNAAGTACCGGGTTTTGGTNANATTNCGGGAAAANGAAAANACNAAAATGGGGGGGGGAGGGGGTCATTGGGCGGGTTTTTNNANCAGGGGAAGGGGTTCCCGGCNAAATTCNAATTGAGGGCACCGGGGGTTGGGAAACTGAATAAAAACTTGTGACGGCAAGGGACGCCGGCGGCGAAGTGGACGCCCCGGTTACATCACGATCGCGACGGGGGGGAACATCGAGGGGATCGCCAACAAATTCACGGTGCCGCAGCCGGCTATTCGGCGTTCCGGGAGGCCAGCTTTCGGCCAACGCCACGCTGGAGATCAAGAACCGGACGCACGCGCACTACGCGTGGCACCGCAACCACGACGGCGCCAAGGCCGTCGCCGACGCCGTCTGGCTCACCAACCGCTACTGGATGCCCACCAACGACGATGTATAATTATTAATCGACTCCAACCATCTCAAACTTCTTAATTTGTATCACTGCTATGCTATTGCCATTCTTCTTCTTCTTTAGCTTTGGATAATAAATACTCCTACTA] [-] EMBL BE229096 [ATCCNCGGATTTTGGCCNCNATCCNNGAAAACCAGGANGNGGGGGTTCCACCGTTGCNAAGTACCGGGTTTTGGTNANATTNCGGGAAAANGAAAANACNAAAATGGGGGGGGGAGGGGGTCATTGGGCGGGTTTTTNNANCAGGGGAAGGGGTTCCCGGCNAAATTCNAATTGAGGGCACCGGGGGTTGGGAAACTGAATAAAAACTTGTGACGGCAAGGGACGCCGGCGGCGAAGTGGACGCCCCGGTTACATCACGATCGCGACGGGGGGGAACATCGAGGGGATCGCCAACAAATTCACGGTGCCGCAGCCGGCTATTCGGCGTTCCGGGAGGCCAGCTTTCGGCCAACGCCACGCTGGAGATCAAGAACCGGACGCACGCGCACTACGCGTGGCACCGCAACCACGACGGCGCCAAGGCCGTCGCCGACGCCGTCTGGCTCACCAACCGCTACTGGATGCCCACCAACGACGATGTATAATTATTAATCGACTCCAACCATCTCAAACTTCTTAATTTGTATCACTGCTATGCTATTGCCATTCTTCTTCTTCTTTAGCTTTGGATAATAAATACTCCTACTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13347#1 AGAGTAGCACAAGAAGCAGAGTGCGGCTAGCTCACAGTCACCATGGGGATGCTGCGGTGG 60 consensus_13347#2 ------------------------------------------------------------ consensus_13347#0 ------------------------------------------------------------ consensus_13347#1 GGAGCTCACCTCCTCCTCCTCCTCCTCGCCGCGGCGACGTGGACGTGCGCCGGCGCCGGC 120 consensus_13347#2 ------------------------------------------------------------ consensus_13347#0 ------------------------------------------------------------ consensus_13347#1 GCCGGGGTGACGAGCGAGTACCGGCGGAAGCTGGAGGCGACGGTGGACATGCCGCTCGAC 180 consensus_13347#2 ------------------------------------------------------------ consensus_13347#0 ------------------------------------------------------------ consensus_13347#1 GCCGACGTCTTCCGCGTGCCGCCGGGCTACAATGCTCCGCAGCAGGTGCACATCACGCTG 240 consensus_13347#2 ------------------------------------------------------------ consensus_13347#0 ------------------------------------------------------------ consensus_13347#1 GGGGACCAGACGGGGACGGCGATGACGGTGTCGTGGGTGACGGCGAACGAGCTGGGGAGC 300 consensus_13347#2 ------------------------------------------------------------ consensus_13347#0 ------------------------------------------------------------ consensus_13347#1 AACACGGTCAGGTACGGGAGCTCGCCGGAGAAGCTGGACCGCGCGGCGGAGGGGAGCCAC 360 consensus_13347#2 ------------------------------------------------------------ consensus_13347#0 ------------------------------------------------------------ consensus_13347#1 ACGAGGTACGACTACTTCAACTACACCTCCGGCTTCATCCACCACTGCACCCTCACCGGC 420 consensus_13347#2 ------------------------------------------------------------ consensus_13347#0 ------------------------------------------------------------ consensus_13347#1 CTCACCCACGCCACCAAGTACTACTACGCCATGGGCTTCGATCACACCGTCCGTACCTTC 480 consensus_13347#2 ------------------------------------------------------------ consensus_13347#0 ------------------------------------------------------------ consensus_13347#1 TCCTTCACCACGCCGCCCAAGCCCGCTCCCGACGCCCCCTTCAAGTTCGGCCTCATCGGT 540 consensus_13347#2 ------------------------------------------------------------ consensus_13347#0 ------------------------------------------------------------ consensus_13347#1 GACCTCGGGCAGACGTTCGACTCGAACAGCACGCTGGCGCACTACGAGGCCAACGGCGGC 600 consensus_13347#2 ------------------------------------------------------------ consensus_13347#0 -----------------------------------------------------CGGCGGC 7 consensus_13347#1 GACGCCGTCCTCTTCGTCGGCGACCTCTCCTACGCCGACAACTACCCTCTCCACGACAAC 660 consensus_13347#2 ------------------------------------------------------------ consensus_13347#0 GACGCGGTGCTGTTCATCGGCGACCTGTCGTACGCGGACAACCACCCGGGGCACGACAAC 67 consensus_13347#1 AACCGCTGGGACACGTGGGCGCGCTTCGTCGAGCGCAGCGTCGCGTACCAGCCATGGATC 720 consensus_13347#2 ------------------------------------------------------------ consensus_13347#0 AACCGGTGGGACACGTGGGCGCGGTTCGTGGAGCGGAGCGTGGCGTACCAGCCGTGGATC 127 consensus_13347#1 TGGACCGCCGGCAACCACGAGCTGGACTACGCGCCGGAGCTGGGCGAGACGGTCCCCTTC 780 consensus_13347#2 ------------------------------------------------------------ consensus_13347#0 TGGACGACGGGGAACCACGAGCTGGACTTCGCGCCGGAGCTGGGGGAGACGACGCCGTTC 187 consensus_13347#1 AAGCCCTTCACCCACCGGTACCCGACGCCGTACCGCGCCGCCGGCAGCACGGAGCCGTTC 840 consensus_13347#2 ------------------------------------------------------------ consensus_13347#0 AAGCCGTTCACGAACAGGTACCCGACGCCGTTCGGGGCGTCGGGGAGCACGCGGCCGCTG 247 consensus_13347#1 TGGTACTCCGTCAAGATCGCCTCCGCGCACGTCATCGTGCTGGCCTCCTACTCCGCCTAC 900 consensus_13347#2 ------------------------------------------------------------ consensus_13347#0 TGGTACTCGGTGAGGATGGCGTCGGCGCACGTGATCGTGCTGGCGTCGTACGCGGCGTAC 307 consensus_13347#1 GGCAAGTACACGCCGCAGTGGACATGGCTGCAGGAGGAGCTCGCCACCCGCGTCGACCGC 960 consensus_13347#2 -------------------------ATCCNCGGATTTTGGCCNCNATCCNNGAAAACCAG 35 consensus_13347#0 GGCAAGTACACGCCGCAGTGGAGGTGGTTGGAGGGGGAGCT---GAGGCGCGTGGACAGG 364 * * * * * ** consensus_13347#1 AAGCTCACCCCGTGGCTCATCGTGCTCATGCACTCG-CCGTGGTACAACAGCAACAACTA 1019 consensus_13347#2 GANGNGG----GGGTTCCACCGTTGCNAAGTACCGGGTTTTGGTNANATTNCGGGAAA-A 90 consensus_13347#0 GCGGTGACGCCATGGCTGATCGTGTGCGTGCACTCG-CCGTGGTACAGCAGCAACGGATA 423 * * *** * ** * **** * * consensus_13347#1 CCACTACATGGAGGGGGAGACGATGCGCGTCCAGTTCGAGCGGTGGCTCGTCGACGCCAA 1079 consensus_13347#2 NGAAAANACNAAAATGGGGGGGGGAGGGGGTCA--TTGGGCGG--GTTTTTNNAN--CAG 144 consensus_13347#0 CCACTACATGGAGGGGGAGTCGATGCGCGTGGAGTTCGAGCGGTGGCTCGTCGACGCCAA 483 * * * * ** * * * * * * * **** * * * * ** consensus_13347#1 GGTGGACGTGGTGCTCGCCGGCCACGTCCACTCGTACGAGCGCAGCCGGAGGTTCGCGAA 1139 consensus_13347#2 GG--GAAGGGGTTC---CCGGCNAAATTCNAAT---TGAGGGCA-CCGGGGGTTGGGAAA 195 consensus_13347#0 GGCCGACGTGGTGCTCGCCGGGCACGTCCACTCGTACGAGCGGACGCGGCGGGTGTCGAA 543 ** ** * *** * **** * * * *** * * *** ** * ** consensus_13347#1 CATCGACTACAACATCGTGAACGGCAAGGCGACGCCGGCGGCGAACGTGGACGCGCCGGT 1199 consensus_13347#2 C--TGAATAAAAACTTGTGA-CGGCAAGG-GACGCCGGCGGCGAA-GTGGACGCCCCGGT 250 consensus_13347#0 CGTGGCGTACGACATCGCCAACGGGATGGCGACGCCGGTGTTCAACCGGTCGGCGCCGGT 603 * * ** * * * * *** * ** ******** * ** * ** ***** consensus_13347#1 GTACATCACGATCGGCGACGGGGGGAACATCGAGGGGATCGCCAACAACTTCACGGTGCC 1259 consensus_13347#2 -TACATCACGATCGCGACGGGGGGGAACATCGAGGGGATCGCCAACAAATTCACGGTGCC 309 consensus_13347#0 GTACATCAACATCGGCGACGGGGGGAACATCGAGGGGCTCGCCGACGACTTCCGGTGGCC 663 ******* **** ****************** ***** ** * *** * *** consensus_13347#1 GCAGCCGGCCTACTCGGCGTTCCGGGAGGCCAGCTT-CGGCCA-CGCCACGCTGGAGATC 1317 consensus_13347#2 GCAGCCGGC-TATTCGGCGTTCCGGGAGGCCAGCTTTCGGCCAACGCCACGCTGGAGATC 368 consensus_13347#0 GCAGCCGGACTACTCGGTGTTCCGGGAGGCCAGCTT-CGGCCA-AGGCACGCTGCAGATC 721 ******** ** **** ****************** ****** * ******* ***** consensus_13347#1 AAGAACCGGACGCACGCGCACTACGCGTGGCACCGCAACCACGACGGCGCCAAGGCCGTC 1377 consensus_13347#2 AAGAACCGGACGCACGCGCACTACGCGTGGCACCGCAACCACGACGGCGCCAAGGCCGTC 428 consensus_13347#0 GTCAACCGGACGCACGCCTTCTACGAGTGGCACCGCAACAGCGACGGCGTCAAGGTCGTC 781 ************** ***** ************* ******** ***** **** consensus_13347#1 GCCGACGCCGTCTGGCTCACCAACCGCTACTGGATGCCCACCAACGACGATGTATAATTA 1437 consensus_13347#2 GCCGACGCCGTCTGGCTCACCAACCGCTACTGGATGCCCACCAACGACGATGTATAATTA 488 consensus_13347#0 GCCGACCATGCCTGGTTCACCAACCGATACTGGTTTCCCACCGACACCAACTAGCTACCC 841 ****** * **** ********** ****** * ****** ** * * * consensus_13347#1 TTAATCGACTCCAACCATCTCAAACTTCTTAATTTGTATCACTGCTATGCTATTGCCATT 1497 consensus_13347#2 TTAATCGACTCCAACCATCTCAAACTTCTTAATTTGTATCACTGCTATGCTATTGCCATT 548 consensus_13347#0 TTAATTTCCTACGGCCTACTTCCTCTGTCATGTAAAAAACCAATCTATACTAGTATAGGA 901 ***** ** * ** ** ** * * * **** *** * consensus_13347#1 CTTCTTCTTCTTTAG--CTTTGGATA-ATAAATACTCCTACTATGCAATAACAAATACTA 1554 consensus_13347#2 CTTCTTCTTCTTTAG--CTTTGGATA-ATAAATACTCCTACTA----------------- 588 consensus_13347#0 TATGATATATTCTAGTACTACGAATATAGATATACATCTATTCAGATTCATCGTATAAGA 961 * * * * *** ** * *** * * **** *** * consensus_13347#1 CTAGCAGAGTCTATCTTGTTAAGCCGTGAGATAATTAATCCCCAAA-------------- 1600 consensus_13347#2 ------------------------------------------------------------ consensus_13347#0 ATATGTCGCATCCGATTCTAGATTCGTTTTCCGCGGGACGGAGAAAATACCTGCTTAATT 1021 consensus_13347#1 ------------------------------------------------------------ consensus_13347#2 ------------------------------------------------------------ consensus_13347#0 TTTTCTTTATTACTAGTACTTTTCTTTTTCTAGATTTCGACCTGAATTCTATTTAGTACG 1081 consensus_13347#1 ------------------------------------------------------------ consensus_13347#2 ------------------------------------------------------------ consensus_13347#0 AATGCATCAACAGCAAAACAGATTAGCACACTAGAGAGGGAGATGGATTAATAAAATCAT 1141 consensus_13347#1 ------------------------------------------------------------ consensus_13347#2 ------------------------------------------------------------ consensus_13347#0 TCGGTTCTGTTTGGAGTTTGCTAGTATAATATATTCTTGGTTCTGTTTGGAGTTTGCTAT 1201 consensus_13347#1 ------------------------------------------------------------ consensus_13347#2 ------------------------------------------------------------ consensus_13347#0 AATATATTCTTTCTTGACGAATTATCTCCATTCGTAAGCGTGCGTTATCCTCGCCTCAAC 1261 consensus_13347#1 ------------------------------------------------------------ consensus_13347#2 ------------------------------------------------------------ consensus_13347#0 TAATATTGGAATTACAGTTCTTCTGTCCAGAATAGTAGCTTGGCTATCCCTTTGTCTTTT 1321 consensus_13347#1 ------------------------------------------------------------ consensus_13347#2 ------------------------------------------------------------ consensus_13347#0 GCTCTGCCGAATAAAACAGCAACTGCAGTTGTTACACAATTTTTCTAAAAAAATCTTAGT 1381 consensus_13347#1 ------------------------------------------------------------ consensus_13347#2 ------------------------------------------------------------ consensus_13347#0 CCAAATTCCGAAACAATTCATTCTACTACTTGGGACCTGGGAGTGGAAAAGCAGTTCTGA 1441 consensus_13347#1 ------------------------------------------------------------ consensus_13347#2 ------------------------------------------------------------ consensus_13347#0 CTGAATAATTCATACGCGTGATAAATTGGGATATTGAGAGCCGTATAGCGAATCAGAATT 1501 consensus_13347#1 ------------------------------------------------------------ consensus_13347#2 ------------------------------------------------------------ consensus_13347#0 TTGATATAACGTACTGAATGAACAAGAATGACCTCTGTATTGGGCATATCCGCATATGGC 1561 consensus_13347#1 ------------------------------------------------------------ consensus_13347#2 ------------------------------------------------------------ consensus_13347#0 AATTTGTCGACCATCATGGAACAGTTTGATCAAGTTGATGGCATGCGTTTTTAGAGAAAG 1621 consensus_13347#1 ------------------------------------------------------------ consensus_13347#2 ------------------------------------------------------------ consensus_13347#0 TTGATGCAATGCACTGGAAATGTAATGTTGTACTCCAAACAGAATTGGGCAAGCCCTGAT 1681 consensus_13347#1 ------------- consensus_13347#2 ------------- consensus_13347#0 ATGCTATTCCGCC 1694 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||