These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13349#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1840 fasta sequence [CAGTTTCCACTTTTTTCCAAAGCCGAAAAATCGAGAGAGAAAGAGCAAAACCCTAACCGCGGCGCTCCGCCCCCTTCCGCCGCCGGATTCCTCCTCCTCCTTCGTCCGCCTTCGCCGGCGCCGCCCTGCTCCGAAGGAGCCCAGGCCTTGTCGCCGCGTCGCTTGCCCCGCCGCCGGTTTCAGCAGCAGCCACCCCCACCACCATGTCTTCTCAGGTCGACAACCGTAGCCAATCTGCTGGAAAGCGTGCCCGCACCGACGGTGGGCGGCGTGAGGACGACTGGGTTTGCCCCAGCTGCCAGAACGTCAACTTCGCCTTCCGCACC-ACCTGCAACATGCGCAATTGCAACCAATCCAGGCCCACCGACTATAC---GGATATGCAGAAACCTATGCAGACACCGCCGCCCCATTTCCCCATGTCAGGGGGATACATGAGCCCAGGGACGCCGCCATCCATGTACCTCGGGGGTGGTGCTCCCCCTTATGGCACCTCCCTCTATGGCGGACCTGCTTTACCACGTTATGGTATTGCTCAGTTCCCTGGGGGTTCTGGATATCCATATGGCTATGGTGGCCGCCTGCCAATGGGGAGCCCCTATGGGCCGCCGATGCATATGGCAGGGCCTCCATATTCTGCTGGATCCATGATGGGACCAGGTGGAATGTATGGGATGCCCATGGACAGATATAGCTTGGGCTTACCTGCTGGTCCTGGTCCAATGGGCGCGAGGGCTGGTTCATATTCCGAGGAAGGATCCCAGAAGAAGCCTGCAGGAGCTGGGCGTGATAATGATTGGAAATGCCCTAATTGCAACAACATTAACTTTGCATTCCGGACAGTCTGTAACATGAGAAAGTGCAATACACCAAGACCTGAAAACCAGGGGTCCAAACCTGATGGTGCAAGAGGTCCAAAACCAAAGATGCCAGAAGGTAGTTGGAAGTGCGAGAAGTGCAATAACATAAACTATCCATTCCGCACAAAATGTAACCGTCCAAGTTGCGAGGCTGAAAAGCCATTTCAGACAAACAATGCTAATGAGTCATCTGCTGATCAGGACAATCAGTTGTTGTCATGTAATATTGTGAAGCTTTTATCAAAGCTGCAACTTTCACATGACTTTCAAGACAATAATGAGCAAACAAAGGTGGATCCTCCCGGTGGCCCTGCTGGAGTACCGACAAGTTCGCACGCCCTGCGAATGGCAGCTCTCAGTGAGTTGCAGAACAGTGTTAAGAGCTGATACCCTTTTCATTTTCCAAACAAGGTGAGAACTTTGATCCATGTGGATGTGCTTCTATCAGGAGCAGCTGACAGTATTGCATGCAGTGATCTTGCTAAGGAAGTTGGAGATGGGAAACATCGTGTGATGGCCAGCCTTGATGTAAGAATGCAAATCAGTCTTACTCCGTACCATATCTGTGTGGAGTGTGCACACCGGAAGCATAGTCATTTTTTGAATGGTCGATTGCTTCTTCCACAGTAAAGTCTATAATACCAGTGTGCAGGTGTTTTTTTCCCTTTCTTTCAGTGTGAAGGTGTTTTTTTACCTCTTTCTTTCGTTCATTCATTCTTTTTCTTTTTCCTTGTTGAGACGGTATCCTGGAGCACTTTGTAATACTCTAATGTGCTTCGGAAAGTAGAATATAAGTTGTGCTTATGGGCGGGCCAAAATGCTTTGGCCGTTAGTTGCATGACAGCCTTTCCAACATGCTGCTGCCTAGCCGTAGTTCTCCCAAAAATGAAACCATCTTGAGATCCGTTTGCGGTTGAACTGAAATTAGACGGTATCTCTGGTTTCAACATCATCCTTTAAACCCTGGATGAAAGATTTGCAAT] [+] EMBL AK105045 [CAGTTTCCACTTTTTTCCAAAGCCGAAAAATCGAGAGAGAAAGAGCAAAACCCTAACCGCGGCGCTCCGCCCCCTTCCGCCGCCGGATTCCTCCTCCTCCTTCGTCCGCCTTCGCCGGCGCCGCCCTGCTCCGAAGGAGCCCAGGCCTTGTCGCCGCGTCGCTTGCCCCGCCGCCGGTTTCAGCAGCAGCCACCCCCACCACCATGTCTTCTCAGGTCGACAACCGTAGCCAATCTGCTGGAAAGCGTGCCCGCACCGACGGTGGGCGGCGTGAGGACGACTGGGTTTGCCCCAGCTGCCAGAACGTCAACTTCGCCTTCCGCACC ACCTGCAACATGCGCAATTGCAACCAATCCAGGCCCACCGACTATAC GGATATGCAGAAACCTATGCAGACACCGCCGCCCCATTTCCCCATGTCAGGGGGATACATGAGCCCAGGGACGCCGCCATCCATGTACCTCGGGGGTGGTGCTCCCCCTTATGGCACCTCCCTCTATGGCGGACCTGCTTTACCACGTTATGGTATTGCTCAGTTCCCTGGGGGTTCTGGATATCCATATGGCTATGGTGGCCGCCTGCCAATGGGGAGCCCCTATGGGCCGCCGATGCATATGGCAGGGCCTCCATATTCTGCTGGATCCATGATGGGACCAGGTGGAATGTATGGGATGCCCATGGACAGATATAGCTTGGGCTTACCTGCTGGTCCTGGTCCAATGGGCGCGAGGGCTGGTTCATATTCCGAGGAAGGATCCCAGAAGAAGCCTGCAGGAGCTGGGCGTGATAATGATTGGAAATGCCCTAATTGCAACAACATTAACTTTGCATTCCGGACAGTCTGTAACATGAGAAAGTGCAATACACCAAGACCTGAAAACCAGGGGTCCAAACCTGATGGTGCAAGAGGTCCAAAACCAAAGATGCCAGAAGGTAGTTGGAAGTGCGAGAAGTGCAATAACATAAACTATCCATTCCGCACAAAATGTAACCGTCCAAGTTGCGAGGCTGAAAAGCCATTTCAGACAAACAATGCTAATGAGTCATCTGCTGATCAGGACAATCAGTTGTTGTCATGTAATATTGTGAAGCTTTTATCAAAGCTGCAACTTTCACATGACTTTCAAGACAATAATGAGCAAACAAAGGTGGATCCTCCCGGTGGCCCTGCTGGAGTACCGACAAGTTCGCACGCCCTGCGAATGGCAGCTCTCAGTGAGTTGCAGAACAGTGTTAAGAGCTGATACCCTTTTCATTTTCCAAACAAGGTGAGAACTTTGATCCATGTGGATGTGCTTCTATCAGGAGCAGCTGACAGTATTGCATGCAGTGATCTTGCTAAGGAAGTTGGAGATGGGAAACATCGTGTGATGGCCAGCCTTGATGTAAGAATGCAAATCAGTCTTACTCCGTACCATATCTGTGTGGAGTGTGCACACCGGAAGCATAGTCATTTTTTGAATGGTCGATTGCTTCTTCCACAGTAAAGTCTATAATACCAGTGTGCAGGTGTTTTTTTCCCTTTCTTTCAGTGTGAAGGTGTTTTTTTACCTCTTTCTTTCGTTCATTCATTCTTTTTCTTTTTCCTTGTTGAGACGGTATCCTGGAGCACTTTGTAATACTCTAATGTGCTTCGGAAAGTAGAATATAAGTTGTGCTTATGGGCGGGCCAAAATGCTTTGGC ] [+] EMBL AK101704 [ CTTTCTTCCAAAGCCGAAAAATCGAGAGAGAAAGAGCAAAACCCTAACGGCGGCGCTCCGCCCCCTTCCGCCGCCGGATTCCTCCTCCTCCTTCGTCCGCCTTCGCCGGCGCCGCCCTGCTCCGAAGGAGCCCAGGCCTTGTCGCCGCGTCGCTTGCCCCGCCGCCGGTTTCAGCAGCAGCCACCCCCACCACCATGTCTTCTCAGGTCGACAACCGTAGCCAATCTGCTGGAAAGCGTGCCCGCACCGACGGTGGGCGGCGTGAGGACGACTGGGTTTGCCCCAGCTGCCAGAACGTCAACTTCGCCTTCCGCACC ACCTGCAACATGCGCAATTGCAACCAATCCAGGCCCACCGACTATACGAAGGATATGCAGAAACCTATGCAGACACCGCCGCCCCATTTCCCCATGTCAGGGGGATACATGAGCCCAGGGACGCCGCCATCCATGTACCTCGGGGGTGGTGCTCCCCCTTATGGCACCTCCCTCTATGGCGGACCTGCTTTACCACGTTATGGTATTGCTCAGTTCCCTGGGGGTTCTGGATATCCATATGGCTATGGTGGCCGCCTGCCAATGGGGAGCCCCTATGGGCCGCCGATGCATATGGCAGGGCCTCCATATTCTGCTGGATCCATGATGGGACCAGGTGGAATGTATGGGATGCCCATGGACAGATATAGCTTGGGCTTACCTGCTGGTCCTGGTCCAATGGGCGCGAGGGCTGGTTCATATTCCGAGGAAGGATCCCAGAAGAAGCCTGCAGGAGCTGGGCGTGATAATGATTGGAAATGCCCTAATTGCAACAACATTAACTTTGCATTCCGGACAGTCTGTAACATGAGAAAGTGCAATACACCAAGACCTGAAAACCAGGGGTCCAAACCTGATGGTGCAAGAGGTCCAAAACCAAAGATGCCAGAAGGTAGTTGGAAGTGCGAGAAGTGCAATAACATAAACTATCCATTCCGCACAAAATGTAACCGTCCAAGTTGCGAGGCTGAAAAGCCATTTCAGACAAACAATGCTAATGAGTCATCTGCTGATCAGGACAATCAGTTGTTGTCATGTAATATTGTGAAGCTTTTATCAAAGCTGCAACTTTCACATGACTTTCGAGACAATAATGAGCAAACAAAGGTGGATCCTCCCGGTGGCCCTGCTGGAGTACCGACAAGTTCGCACGCCCTGCGAATGGCAGCTCTCAGTGAGTTGCAGAACAGTGTTAAGAGCTGATACCCTTTTCATTTTCCAAACAAGGTGAGAACTTTAATCCATGTGGATGTGCTTCTATCAGGAGCAGCTGACAGTATTGCATGCAGTGATCTTGCTAAGGAAGTTGGAGATGGGAAACATCGTGTGATGGCCAGCCTTGATGTAAGAATGCAAATCAGTCTTACTCCGTACCATATCTGTGTGGAGTGTGCACACCGGAAGCATAGTCATTTTTTGAATGGTCGATTGCTTCTTCCACAGTAAAGTCTATAATACCAGTGTGCAGGTGTTTTTTTCCCTTTCTTTCAGTGTGAAGGTGTTTTTTTACCCCTTTCTTTCGTTCATTCATTCTTTTTCTTTTTCCTTGTTGAGACGGTATCCTGGAGCACTTTGTAATACTCTAATGTGCTTCGGAAAGTAGAATATAAGTTGTGCTTATGGGCGGGCCAAAATGCTTTGGCCGTTAGTTGCATGACAGCCTTTCCAACATGCTGCTGCCTAGCCGTAGTTCTCCCAAAAATGAAACCATCTTGAGATCCGTTTGCGGTTGAACTGAAATTAGACGGTATCTCTGGTTTCAACATCATCCTTTAAACCCTGGATGAAAGATTTGCAAT] [+] EMBL CB677211 [ TCCAACGTCGAAAAATCGAGAGAGAAAGAGCAAAACCCTAACCGCGGCGCTCCGCCCCCTTCCGCCGCCGGATTCCTCCTCCTCCTTCGTCCGCCTTCGCCGGCGCCGCCCTGCTCCGAAGGAGCCCAGGCCTTGTCGCCGCGTCGCTTGCCCCGCCGCCGGTTTCAGCAGCAGCCACCCCCACCACCATGTCTTCTCAGGTCGACAACCGTAGCCAATCTGCTGGAAAGCGTGCCCGCACCGACGGTGGGCGGCGTGAGGACGACTGGGTTTGCCCCAGCTGCCAGAACGTCAACTTCGCCTTCCGCACC ACCTGCAACATGCGCAATTGCAACCAATCCAGGCCCACCGACTATAC GAAACCTATGCAGACACCGCCGCCCCATTTCCCCATGTCAGGGGGATACATGAGCCCAGGGACGCCGCCATCCATGTACCTCGGGGGTGGTGCTCCCCCTTATGGCACCTCCCTCTATGGCGGACCTGCTTTACCACGTTATGGTATTGCTCAGTTCCCTGGGGGTTCTGGATATCCATATGGCTATGGTGGCCGCCTGCCAATGGGGAGCCCCTATGGGCCGCCGATGCATATGGCAGGGCCTCCATATTCTGCTGGATCCATGATGGGACCAGGTGGAATGTATGGGATGCCCATGGACAGATATAGCTTGGGCTTACCTGCTGGTCCTGGTCCAATGGGCGCGAGGGCTGGTTCATATTCCGA ] [+] EMBL AU065680 [ AGAGAGAAAGAGCAAAACCCTAACCGCGGCGCTCCGCCCCCTTCCGCCGCCGGATTCCTCCTCCTCCTTCGTCCGCCTTCGCCGGCGCCGCCCTGCTCCGAAG NCTCAGGCCTTGTCGCCGCGTCGCTTGCCCCGCCGCCGGTTTCAGCAGCAGCCACCCCCACCACCATGTCTTCTCAGGTCGACAACCGTAGCCAATCTGCTGGAAAGCGTGCCCGCACCGACGGTGGGCGGCGTGAGGACGACTGGGTTTGCCCCAG TGCCAGAACGTCAACTTCG CTTCCGCACC A CTGCAACATGCGCAATTGC ACCAATCCAGG CCACCGACTATAC GG TATGCAGAA CT TGCA NCA CGCGGCCattc ] [+] EMBL AU065715 [ AGAGAGAAAGAGCAAAACCCTAACCGCGGCGCTCCG CCCCTTCCGCCGCCGGATTCCTCCTCCTCCTTCGTCCGCCTTCGCCGGCGCCGCCCTGCTCCGAA GNCACAAGGCCTTGTCGCCGCGTCGCTTGCCCCGCCGCCGGTTTCAGCAGCAGCCACCCCCACCACCATGTCTTCTCAGGTCGACAACCGTAGCCAATCTGCTGGAAAGCGTGCCCGCACCGACGGTGGGCGGCGTGAGGACGACTGGGTTTGCCCCAGCTGCCAGAACGTCAACTTCGCCTTCCGCACCAACTTGCAACATGCGCAATTGCAACCAATCCAGGCCCACGGACTATAC GGATATGCAGAAA ] consensusID : consensus_13349#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1380 fasta sequence [TCAGTTTCCACTTTCTTCCAAAGCCGAAAAATCGAGAGAGAAAGAGCAAAACCCTAACCGCGGCGCTCCGCCCCCTTCCGCCGCCGGATTCCTCCTCCTCCTTCGTCCGCCTTCGCCGGCGCCGCCCTGCTCCGAAGGAGCCCAGGCCTTGTCGCCGCGTCGCTTGCCCCGCCGCCGGTTTCAGCAGCAGCCACCCCCACCACCATGTCTTCTCAGGTCGACAACCGTAGCCAATCT-GCTGGAAAGCGTGCCCGCACCGACGGTGGGCGGCGTGAGGACGAC-TGGGTTTGCCCCAGCTGCCAGAACGTCAAC-TTCGCCTTCCGCACCACCTGCAACATGCGCAATTGCAACCAATCCAGGCCCACCGACTATACGAAGGATATGCAGAAACCTATGCAGACACCGCCGCCCCATTTCCCCATGTCAGGGGGATACATGAGCCCAGGGACGCCGCCATCCATGTACCTCGGGGGTGGTGCTCCCCCTTATGGCACCTCCCTCTATGGCGGACCTGCTTTACCACGTTATGGTATTGCTCAGTTCCCTGGGGGTTCTGGATATCCATATGGCTATGGTGGCCGCCTGCCAATGGGGAGCCCCTATGGGCCGCCGATGCATATGGCAGGGCCTCCATATTCTGCTGGATCCATGATGGGACCAGGTGGAATGTATGGGATGCCCATGGACAGATATAGCTTGGGCTTACCTGCTGGTCCTGGTCCAATGGGCGCGAGGGCTGGTTCATATTCCGAGGAAGGATCCCAGAAGAAGCCTGCAGGAGCTGGGCGTGATAATGATTGGAAATGCCCTAATTGCAACAACATTAACTTTGCATTCCGGACAGTCTGTAACATGAGAAAGTGCAATA-CACCAAGACC-TGAAAACCAGGGGTCCAAACCTGAT-GGTGCAA-GAGGT-CCAAAACCAAAGATGCCAGAAGGTAGTTGGAAGTGCGAGAAGTGCAATAACATAAACTATCCATT-CCGCACAAAATGTAACCGTCCAAGTTG-CGAGGCTGAAAAGCCATTTCAGACAAACAATGCTAATGAGTCATCTGCTGATCAGGACAATCAGTGAGTCCTAGAACAGTTATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAGGTTCAGTCTGAATGTCTGGGGTCTATCTGTGTCAGTAGTCGCTGCTGTATCCCCTTGAGACCTTAGTTGAGTCGTCGTCCTAATGGTAAACGTTTTGGAGTGGCAACTGGAGTCATGGATTTCTTTATTGCTACAGATTTTGGTTAAGAACATCCCTTGTGAATTTGTCATATACTTCTGAAGCTTGGTTGCTTTGTCTTGGTTACTGGTACTCTGGGAAAATGGCAATTTATGATATAAATTTCAATTAGCTAAAAA] [+] EMBL AK070148 [TCAGTTTCCACTTTCTTCCAAAGCCGAAAAATCGAGAGAGAAAGAGCAAAACCCTAACCGCGGCGCTCCGCCCCCTTCCGCCGCCGGATTCCTCCTCCTCCTTCGTCCGCCTTCGCCGGCGCCGCCCTGCTCCGAAGGAGCCCAGGCCTTGTCGCCGCGTCGCTTGCCCCGCCGCCGGTTTCAGCAGCAGCCACCCCCACCACCATGTCTTCTCAGGTCGACAACCGTAGCCAATCT GCTGGAAAGCGTGCCCGCACCGACGGTGGGCGGCGTGAGGACGAC TGGGTTTGCCCCAGCTGCCAGAACGTCAAC TTCGCCTTCCGCACCACCTGCAACATGCGCAATTGCAACCAATCCAGGCCCACCGACTATACGAAGGATATGCAGAAACCTATGCAGACACCGCCGCCCCATTTCCCCATGTCAGGGGGATACATGAGCCCAGGGACGCCGCCATCCATGTACCTCGGGGGTGGTGCTCCCCCTTATGGCACCTCCCTCTATGGCGGACCTGCTTTACCACGTTATGGTATTGCTCAGTTCCCTGGGGGTTCTGGATATCCATATGGCTATGGTGGCCGCCTGCCAATGGGGAGCCCCTATGGGCCGCCGATGCATATGGCAGGGCCTCCATATTCTGCTGGATCCATGATGGGACCAGGTGGAATGTATGGGATGCCCATGGACAGATATAGCTTGGGCTTACCTGCTGGTCCTGGTCCAATGGGCGCGAGGGCTGGTTCATATTCCGAGGAAGGATCCCAGAAGAAGCCTGCAGGAGCTGGGCGTGATAATGATTGGAAATGCCCTAATTGCAACAACATTAACTTTGCATTCCGGACAGTCTGTAACATGAGAAAGTGCAATA CACCAAGACC TGAAAACCAGGGGTCCAAACCTGAT GGTGCAA GAGGT CCAAAACCAAAGATGCCAGAAGGTAGTTGGAAGTGCGAGAAGTGCAATAACATAAACTATCCATT CCGCACAAAATGTAACCGTCCAAGTTG CGAGGCTGAAAAGCCATTTCAGACAAACAATGCTAATGAGTCATCTGCTGATCAGGACAATCAGTGAGTCCTAGAACAGTTATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAGGTTCAGTCTGAATGTCTGGGGTCTATCTGTGTCAGTAGTCGCTGCTGTATCCCCTTGAGACCTTAGTTGAGTCGTCGTCCTAATGGTAAACGTTTTGGAGTGGCAACTGGAGTCATGGATTTCTTTATTGCTACAGATTTTGGTTAAGAACATCCCTTGTGAATTTGTCATATACTTCTGAAGCTTGGTTGCTTTGTCTTGGTTACTGGTACTCTGGGAAAATGGCAATTTATGATATAAAT ] [+] EMBL AU065670 [ AGAGAGAAAGAGCAAAACNCTAACCGCGGCGCTCCG CCCCTTCCGCCGCCGGATTCCNCCTCCTCCTTCGTCCGCCTTCGCCGGCGCCGCCCNGCTCCGAA GA CNCAGGCCTTGTCGCCGCGTCGCTTGCNCCGCCGCCGGTTTCAGCAGCAGCCACNNCCACCACCATGTCTTCTCAGGTCGACAACCGTAGCCAATCTNGCTGGAAAGCGTGCCCGCACCGACGGTGGGCGGCGTGAGGACGACTTGGGTTTGCCCCAGTTGCCAGAACGTCAACTTTCG CTTCNGAACAACtngaa ] [+] EMBL AU030367 [ GGGCTTACCTGCTGGTCCTGGTCCAATGGGCGCGAGGGCTGGTTCATATTCCGAGGAAGGATCCCAGAAGAAGCCTGCAGGAGCTGGGCGTGATAATGATTGGAAATGCCCTAATTGCAACAACATTAACTTTGCATTCCGGACAGTCTGTAACATGAGAAAGTGCAATA CACCAAGACC TGAAAACCAGGGGTCCAAACCTGAT GGTGCAA GAGGT CCAAAACCAAAGATGCCAGAAGGTAGTTGGAAGTGCGAGAAGTGCAATAACATAAACTATCCATT CCGCACAAAATGTAACCGTCCAAGTTG CGAGGCTGAAAAGCCATTTCAGACAAACAATGCTAATGAGTCATCTGCTGATCAGGACAATCAGTGAGTCCTAGAACAGTTATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAGGTTCAGTCTGAATGTCTGGGGTCTATCTGTGTCAGTAGTCGCTGCTGTATCCCCTTGAGACCTTAGTTGAGTCGTCGTCCTAATGGTAAACGTTTTGGAGTGGCAACTGGAGTCATGGATTTCTTTATTGCTACAGATTTTGGTTAAGAACATCCCTTGTGAATTTGTCATATACTTCTGAAGCTTGGTTGCTTTGTCTTGGTTACTGGTACTCTGGGAAAATGGCAATTTATGATATAAATTTCAATTAGCTAAAAA] [+] EMBL AU030324 [ gtTCCTNGTCCCNTGGGCGCGNGGGCTGGTTCA ATTCCGAGGNCGGATCCCNGANGAAGCCTGCCGGNGCTGGGCGTNATAATGATTGGAAATGCCCTCATTGCAACAACATTAACTTTGCATTCCGGACAGTCTGTNACATGAGAANGTGCCATA CACCAAGACC TGAAAACCCGGNGTCCAAACCTGAT GGTGCAA GCNGT CCAAAACCAAAGATGCCAGAAGGTCGTTGGNNGTGCGAGNNGTGCNATAACATAAACTATCCATT CCGCACAAAATGTAACCGTCCAAGTTG CGAGGCTGAAAAGCCATTTCAGACAAACAATGCTAATGAGTCATCTGCTGATCAGGACAATCAGTGAGTCCTNGAACAGTTATGNGGGTCAAGANGGTCCAGCGTCGTCGTCAAGGTTCNGTCTGAATGTCTGGGGTCTATCTGTGTCNGTNGTCGCTGCTGTATCCCCTTGAGACCTTAGTTGAGTCGTCGTCCTAATGGTAAACGTTTTGGNGTGGCAACTGGNGTCATGGATTTCTTTATTGCTACAGATTTTGGTTAAGAACATCCCTTGTGAATTTGTCATATACTTCTGAAGCTTGGTTGCTTTGTCTTGGTTACTNGTACTCTGGGAAAATGGNNATTTATGATATAAATTTCNATTTGCTAAAAA] [+] EMBL AU030483 [ AAGTGCAATACCCCCAAGGCCTTGAAACCCGGGGNTCCAACCCTGATGGGTGCAAGGAGNTCCCAAACCCAAAGATNCCAGAAGGTAGTTGGAAGTCCGAGAAGTGCAATAACATAAACTANCCATTCCCGCACAAAATGTAACCGTCCAAGTTGCCGAGGCTGAAAAGCCATTTCAGACAAACAATGCTAATGAGTCATCTGCTGATCAGGACAATCAGTGAGTCCTAGAACAGTTATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAGGTTCAGTCTGAATGTCTGGGGTCTATCTGTGTCAGTAGTCGCTGCTGTATCCCCTTGAGACCTTAGTTGAGTCGTCGTCCTAATGGTAAACGTTTTGGAGTGGCAACTGGAGTCATGGATTTCTTTATTGCTACAGATTTTGGTTAAGAACATCCCTTGTGAATTTGTCATATACTTCTGAAGCTTGGTTGCTTTGTCTTGGTTACTGGTACTCTGGGAAAATGGCAATTTATGATATAAATTTCAATTAGCTAAAAA] consensusID : consensus_13349#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 712 fasta sequence [TCCCAGAAGAAGCCTGCAGGAGCTGGGCGTGATAATGATTGGAAATGCCCTAATTGCAACAACATTAACTTTGCATTCCGGACAGTCTGTAACATGAGAAAGTGCAATACACCAAGACCTGAAAACCAGGGGTCCAAACCTGATGGTGCAAGAGGTCCAAAACCAAAGATGCCAGAAGGTAGTTGGAAGTGCGAGAAGTGCAATAACATAAACTATCCATTCCGCACAAAATGTAACCGTCCAAGTTGCGAGGCTGAAAAGCCATTTCAGACAAACAATGCTAATGAGTCATCTGCTGATCAGGACAATCAGGTGCATAATTAGAACCTCCAGTATGATCATCATTATATGCCATGCCTTTCTTTAGAACAATTCAATATAAATTGCATATCTTATGTTTTCTATCAACAGTTTCGTTTATTTGCTTGTCTTCATCATCTCTTGTGCATGGCTTGATATATCATGTCCTTACTGTTACAGTGAGTCCTAGAACAGTTATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAGGTTCAGTCTGAATGTCTGGGGTCTATCTGTGTCAGTAGTCGCTGCTGTATCCCCTTGAGACCTTAGTTGAGTCGTCGTCCTAATGGTAAACGTTTTGGAGTGGCAACTGGAGTCATGGATTTCTTTATTGCTACAGATTTTGGTTAAGAACATCCCTTGTGAATTTGTCATAAAAAAAGGA] [-] EMBL CB677212 [TCCCAGAAGAAGCCTGCAGGAGCTGGGCGTGATAATGATTGGAAATGCCCTAATTGCAACAACATTAACTTTGCATTCCGGACAGTCTGTAACATGAGAAAGTGCAATACACCAAGACCTGAAAACCAGGGGTCCAAACCTGATGGTGCAAGAGGTCCAAAACCAAAGATGCCAGAAGGTAGTTGGAAGTGCGAGAAGTGCAATAACATAAACTATCCATTCCGCACAAAATGTAACCGTCCAAGTTGCGAGGCTGAAAAGCCATTTCAGACAAACAATGCTAATGAGTCATCTGCTGATCAGGACAATCAGGTGCATAATTAGAACCTCCAGTATGATCATCATTATATGCCATGCCTTTCTTTAGAACAATTCAATATAAATTGCATATCTTATGTTTTCTATCAACAGTTTCGTTTATTTGCTTGTCTTCATCATCTCTTGTGCATGGCTTGATATATCATGTCCTTACTGTTACAGTGAGTCCTAGAACAGTTATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAGGTTCAGTCTGAATGTCTGGGGTCTATCTGTGTCAGTAGTCGCTGCTGTATCCCCTTGAGACCTTAGTTGAGTCGTCGTCCTAATGGTAAACGTTTTGGAGTGGCAACTGGAGTCATGGATTTCTTTATTGCTACAGATTTTGGTTAAGAACATCCCTTGTGAATTTGTCATAAAAAAAGGA] consensusID : consensus_13349#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 593 fasta sequence [TGCTGATCAGGACAATCAGTTGTTGTCATGTAATATTGTGAAGCTTTTATCAAAGCTGCAACTTTCACATGACNTTTCAAGACAATAATGAGCAAACAAAGGTGGGATCCTCCCCGGTGGCCCTGCTGGAGTACCGACAAAGTTCGCACGCCCTGCGAATGGCAGCTCTCAGTGAGTTGCAGAACAGTGTTAAGAGCTGATACCCTTTTCATTTTCCAAACAAGTGATCTTGCTAAGGAAGTTGGAGATGGGAAACATCGTGTGATGGCCAGCCTTGATGTAAGAATGCAAATCAGTCTTACTCCGTACCATATCTGTGTGGAGTGTGCACACC-GGAAGCATAGTCATTTTTTGAATGGTCGATTGCTTCTTCCACAGTAAAGTCTATAATACCAGTGTGCAGGTGTTTTTTTCCCTTTCTTTCAGTGTGAAGGTGTTTTTTTACCCCTTTCTTTCGTTCATTCATTCTTTTTCTTTTTCCTTGTTGAGACGGTATCCTGGAGCACTTTGTAATACTCTCATGTGCTTCGGAAAGTAGAATATAAGTTGTGCTTATGGGCGGGCCAAAATGCTTTGGCCGTTAGTTGCAAAAA] [-] EMBL CF311690 [TGCTGATCAGGACAATCAGTTGTTGTCATGTAATATTGTGAAGCTTTTATCAAAGCTGCAACTTTCACATGACNTTTCAAGACAATAATGAGCAAACAAAGGTGGGATCCTCCCCGGTGGCCCTGCTGGAGTACCGACAAAGTTCGCACGCCCTGCGAATGGCAGCTCTCAGTGAGTTGCAGAACAGTGTTAAGAGCTGATACCCTTTTCATTTTCCAAACAAGTGATCTTGCTAAGGAAGTTGGAGATGGGAAACATCGTGTGATGGCCAGCCTTGATGTAAGAATGCAAATCAGTCTTACTCCGTACCATATCTGTGTGGAGTGTGCACACC GGAAGCATAGTCATTTTTTGAATGGTCGATTGCTTCTTCCACAGTAAAGTCTATAATACCAGTGTGCAGGTGTTTTTTTCCCTTTCTTTCAGTGTGAAGGTGTTTTTTTACCCCTTTCTTTCGTTCATTCATTCTTTTTCTTTTTCCTTGTTGAGACGGTATCCTGGAGCACTTTGTAATACTCTCATGTGCTTCGGAAAGTAGAATATAAGTTGTGCTTATGGGCGGGCCAAAATGCTTTGGCCGTTAGTTGCAAAAA] [-] EMBL CF311661 [ CCTTGATGTAAGAATGCAGATCAGTCTTACTCGGGACCATATCTGTGTGGAGTGTGCACACCGGGAAGCATAGTCATTTTTTGAATGGTCGATTGCTTCTTCCCCAGTAAAGTCTATAATACCAGTGTGCAGGTGTTTTTTTCCCTTTCTTTCAGTGTGAAGGTGTTTTTTTACCCCTTTCTTTCGTTCAGTCATT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13349#0 CAGTTTCCACTTTTTTCCAAAGCCGAAAAATCGAGAGAGAAAGAGCAAAACCCTAACCGC 60 consensus_13349#3 ------------------------------------------------------------ consensus_13349#1 ------------------------------------------------------------ consensus_13349#2 ------------------------------------------------------------ consensus_13349#0 GGCGCTCCGCCCCCTTCCGCCGCCGGATTCCTCCTCCTCCTTCGTCCGCCTTCGCCGGCG 120 consensus_13349#3 ------------------------------------------------------------ consensus_13349#1 ------------------------------------------------------------ consensus_13349#2 ------------------------------------------------------------ consensus_13349#0 CCGCCCTGCTCCGAAGGAGCCCAGGCCTTGTCGCCGCGTCGCTTGCCCCGCCGCCGGTTT 180 consensus_13349#3 ------------------------------------------------------------ consensus_13349#1 ------------------------------------------------------------ consensus_13349#2 ------------------------------------------------------------ consensus_13349#0 CAGCAGCAGCCACCCCCACCACCATGTCTTCTCAGGTCGACAACCGTAGCCAATCTGCTG 240 consensus_13349#3 ------------------------------------------------------------ consensus_13349#1 ------------------------------------------------------------ consensus_13349#2 ------------------------------------------------------------ consensus_13349#0 GAAAGCGTGCCCGCACCGACGGTGGGCGGCGTGAGGACGACTGGGTTTGCCCCAGCTGCC 300 consensus_13349#3 ------------------------------------------------------------ consensus_13349#1 -------------------------------------------------TCAGTTTCCAC 11 consensus_13349#2 ------------------------------------------------------------ consensus_13349#0 AGAACGTCAACTTCGCCTTCCGCACCACCTGCAACATGCGCAATTGCAACCAATCCAGGC 360 consensus_13349#3 ------------------------------------------------------------ consensus_13349#1 TTTCTTCCAAAGCCGAAAAATCGAGAGAGAAAGAGCAAAACCCTAACCGCGGCGCTCCGC 71 consensus_13349#2 ------------------------------------------------------------ consensus_13349#0 CCACCGACTATACGGATATGCAGAAACCTATGCAGACACCGCCGCCCCATTTCCCCATGT 420 consensus_13349#3 ------------------------------------------------------------ consensus_13349#1 CCCCTTCCGCCGCCGGATTCCTCCTCCTCCTTCGTCCGCCTTCGCCGGCGCCGCCCTGCT 131 consensus_13349#2 ------------------------------------------------------------ consensus_13349#0 CAGGGGGATACATGAGCCCAGGGACGCCGCCATCCATGTACCTCGGGGGTGGTGCTCCCC 480 consensus_13349#3 ------------------------------------------------------------ consensus_13349#1 CCGAAGGAGCCCAGGCCTTGTCGCCGCGTCGCTTGCCCCGCCGCCGGTTTCAGCAGCAGC 191 consensus_13349#2 ------------------------------------------------------------ consensus_13349#0 CTTATGGCACCTCCCTCTATGGCGGACCTGCTTTACCACGTTATGGTATTGCTCAGTTCC 540 consensus_13349#3 ------------------------------------------------------------ consensus_13349#1 CACCCCCACCACCATGTCTTCTCAGGTCGACAACCGTAGCCAATCTGCTGGAAAGCGTGC 251 consensus_13349#2 ------------------------------------------------------------ consensus_13349#0 CTGGGGGTTCTGGATATCCATATGGCTATGGTGGCCGCCTGCCAATGGGGAGCCCCTATG 600 consensus_13349#3 ------------------------------------------------------------ consensus_13349#1 CCGCACCGACGGTGGGCGGCGTGAGGACGACTGGGTTTGCCCCAGCTGCCAGAACGTCAA 311 consensus_13349#2 ------------------------------------------------------------ consensus_13349#0 GGCCGCCGATGCATATGGCAGGGCCTCCATATTCTGCTGGATCCATGATGGGACCAGGTG 660 consensus_13349#3 ------------------------------------------------------------ consensus_13349#1 CTTCGCCTTCCGCACCACCTGCAACATGCGCAATTGCAACCAATCCAGGCCCACCGACTA 371 consensus_13349#2 ------------------------------------------------------------ consensus_13349#0 GAATGTATGGGATGCCCATGGACAGATATAGCTTGGGCTTACCTGCTGGTCCTGGTCCAA 720 consensus_13349#3 ------------------------------------------------------------ consensus_13349#1 TACGAAGGATATGCAGAAACCTATGCAGACACCGCCGCCCCATTTCCCCATGTCAGGGGG 431 consensus_13349#2 ------------------------------------------------------------ consensus_13349#0 TGGGCGCGAGGGCTGGTTCATATTCCGAGGAAGGATCCCAGAAGAAGCCTGCAGGAGCTG 780 consensus_13349#3 ------------------------------------------------------------ consensus_13349#1 ATACATGAGCCCAGGGACGCCGCCATCCATGTACCTCGGGGGTGGTGCTCCCCCTTATGG 491 consensus_13349#2 ------------------------------------------------------------ consensus_13349#0 GGCGTGATAATGATTGGAAATGCCCTAATTGCAACAACATTAACTTTGCATTCCGGACAG 840 consensus_13349#3 ------------------------------------------------------------ consensus_13349#1 CACCTCCCTCTATGGCGGACCTGCTTTACCACGTTATGGTATTGCTCAGTTCCCTGGGGG 551 consensus_13349#2 ------------------------------------------------------------ consensus_13349#0 TCTGTAACATGAGAAAGTGCAATACACCAAGACCTGAAAACCAGGGGTCCAAACCTGATG 900 consensus_13349#3 ------------------------------------------------------------ consensus_13349#1 TTCTGGATATCCATATGGCTATGGTGGCCGCCTGCCAATGGGGAGCCCCTATGGGCCGCC 611 consensus_13349#2 ------------------------------------------------------------ consensus_13349#0 GTGCAAGAGGTCCAAAACCAAAGATGCCAGAAGGTAGTTGGAAGTGCGAGAAGTGCAATA 960 consensus_13349#3 ------------------------------------------------------------ consensus_13349#1 GATGCATATGGCAGGGCCTCCATATTCTGCTGGATCCATGATGGGACCAGGTGGAATGTA 671 consensus_13349#2 ------------------------------------------------------------ consensus_13349#0 ACATAAACTATCCATTCCGCACAAAATGTAACCGTCCAAGTTGCGAGGCTGAAAAGCCAT 1020 consensus_13349#3 ------------------------------------------------------------ consensus_13349#1 TGGGATGCCCATGGACAGATATAGCTTGGGCTTACCTGCTGGTCCTGGTCCAATGGGCGC 731 consensus_13349#2 ------------------------------------------------------------ consensus_13349#0 TTCAGACAAACAATGCTAATGAGTCATCTGCTGATCAGGACAATCAGTTGTTGTCATGTA 1080 consensus_13349#3 ----------------------------TGCTGATCAGGACAATCAGTTGTTGTCATGTA 32 consensus_13349#1 GAGGGCTGGTTCATATTCCGAGGAAGGATCCCAGAAGAAGCCTGCAGGAGCTGG-GCGTG 790 consensus_13349#2 ----------------------------TCCCAGAAGAAGCCTGCAGGAGCTGG-GCGTG 31 * * * *** * ** ** consensus_13349#0 ATATTG--TGAAGCTTTTATCAAAGCTGCAACTTTCACATGACTTT-CAAGACAATAATG 1137 consensus_13349#3 ATATTG--TGAAGCTTTTATCAAAGCTGCAACTTTCACATGACNTTTCAAGACAATAATG 90 consensus_13349#1 ATAATGATTGGAAATGCCCTAATTGCAACAACATTAACTTTGCATT-CCGGACAGTCTGT 849 consensus_13349#2 ATAATGATTGGAAATGCCCTAATTGCAACAACATTAACTTTGCATT-CCGGACAGTCTGT 90 *** ** ** * * * * ** **** ** ** * * ** * **** * consensus_13349#0 AGCAAACAAAGGTGG-ATCCTCCC-GGTGGCCCTGCTGGAGTACCGACAA-GTTCGCACG 1194 consensus_13349#3 AGCAAACAAAGGTGGGATCCTCCCCGGTGGCCCTGCTGGAGTACCGACAAAGTTCGCACG 150 consensus_13349#1 AACATGAGAAAGTGCAATACACCAAGACCTGAAAACCAGGGGTCCAAACCTGATGGTGCA 909 consensus_13349#2 AACATGAGAAAGTGCAATACACCAAGACCTGAAAACCAGGGGTCCAAACCTGATGGTGCA 150 * ** ** *** ** * ** * * * * ** * * * * * consensus_13349#0 CCCTGC---GAATGGCAGCTCTCAGTGAGTTGC-AGAACAGTGTTAAGAGCTG----ATA 1246 consensus_13349#3 CCCTGC---GAATGGCAGCTCTCAGTGAGTTGC-AGAACAGTGTTAAGAGCTG----ATA 202 consensus_13349#1 AGAGGTCCAAAACCAAAGATGCCAGAAGGTAGTTGGAAGTGCGAGAAGTGCAATAACATA 969 consensus_13349#2 AGAGGTCCAAAACCAAAGATGCCAGAAGGTAGTTGGAAGTGCGAGAAGTGCAATAACATA 210 * ** ** * *** ** * *** * * *** ** *** consensus_13349#0 CCCTTTTCATTTTCCAAACAAGGTGA--GAACTTTGATCCATGTGGATGTGCTTCTATCA 1304 consensus_13349#3 CCCTTTTCATTTTCCAAACAAG-------------------------------------- 224 consensus_13349#1 AACTATCCATTCCGCACAAAATGTAACCGTCCAAGTTGCGAGGCTGAAAAGCCATTTCAG 1029 consensus_13349#2 AACTATCCATTCCGCACAAAATGTAACCGTCCAAGTTGCGAGGCTGAAAAGCCATTTCAG 270 ** * **** ** * ** consensus_13349#0 GGAGCAGCTGACAGTATTGCATGCAGTGATCTTGCTAAGGAAGTTGGAGATGGGAAACAT 1364 consensus_13349#3 --------------------------TGATCTTGCTAAGGAAGTTGGAGATGGGAAACAT 258 consensus_13349#1 ACAAACAATGCTAATGAGTCATCTGCTGATCAGGACAATCAG------------------ 1071 consensus_13349#2 ACAAACAATGCTAATGAGTCATCTGCTGATCAGGACAATCAGGTGCATAATTAGAACCTC 330 ***** * ** * consensus_13349#0 C-GTGTGATGGCCA-----------GCCTTGATGTAAGA--ATGCAA-ATCAGTCTTACT 1409 consensus_13349#3 C-GTGTGATGGCCA-----------GCCTTGATGTAAGA--ATGCAA-ATCAGTCTTACT 303 consensus_13349#1 ------------------------------------------------------------ consensus_13349#2 CAGTATGATCATCATTATATGCCATGCCTTTCTTTAGAACAATTCAATATAAATTGCATA 390 consensus_13349#0 CCGTACCATATCTGTGTGGAGT---GTGCACACCGGAAGCATAGTCATTTTTTGAA---- 1462 consensus_13349#3 CCGTACCATATCTGTGTGGAGT---GTGCACACCGGAAGCATAGTCATTTTTTGAA---- 356 consensus_13349#1 ------------------------------------------------------------ consensus_13349#2 TCTTATGTTTTCTATCAACAGTTTCGTTTATTTGCTTGTCTTCATCATCTCTTGTGCATG 450 consensus_13349#0 ---TGGTCGATTGCTTCTTC-----CACAGTAAAGTCTATAA----TACCAGTGTGCAGG 1510 consensus_13349#3 ---TGGTCGATTGCTTCTTC-----CACAGTAAAGTCTATAA----TACCAGTGTGCAGG 404 consensus_13349#1 ------------------------------TGAGTCCTAGAACAGTTATGAGGGTCAAGA 1101 consensus_13349#2 GCTTGATATATCATGTCCTTACTGTTACAGTGAGTCCTAGAACAGTTATGAGGGTCAAGA 510 * * *** ** ** ** ** ** consensus_13349#0 TGTTTTTTTCCCTTTCT-----TTCAGTGTGAAGGTGTTTT-TTTACCTCTTTCTTTCGT 1564 consensus_13349#3 TGTTTTTTTCCCTTTCT-----TTCAGTGTGAAGGTGTTTT-TTTACCCCTTTCTTTCGT 458 consensus_13349#1 AGGTCCAGCGTCGTCGTCAAGGTTCAGTCTGAATGTCTGGGGTCTATCTGTGTCAGTAGT 1161 consensus_13349#2 AGGTCCAGCGTCGTCGTCAAGGTTCAGTCTGAATGTCTGGGGTCTATCTGTGTCAGTAGT 570 * * * * * ****** **** ** * * ** * * ** * ** consensus_13349#0 TCATTCATTCTTTTTCTTTTTCCTT-GTTGAGACGGTATCCT---GGAGCACTTTGTAAT 1620 consensus_13349#3 TCATTCATTCTTTTTCTTTTTCCTT-GTTGAGACGGTATCCT---GGAGCACTTTGTAAT 514 consensus_13349#1 CGCTGCTGTATCCCCTTGAGACCTTAGTTGAGTCGTCGTCCTAATGGTAAACGTTTTGGA 1221 consensus_13349#2 CGCTGCTGTATCCCCTTGAGACCTTAGTTGAGTCGTCGTCCTAATGGTAAACGTTTTGGA 630 * * * * * **** ****** ** **** ** ** ** * consensus_13349#0 ACTCTAATGTGCTTCGGAAAGTAGAATATAAGTTGTGCTTATGGGCGGGCCAAAATGCTT 1680 consensus_13349#3 ACTCTCATGTGCTTCGGAAAGTAGAATATAAGTTGTGCTTATGGGCGGGCCAAAATGCTT 574 consensus_13349#1 GTGGCAACTGGAGTCATGGATTTCTTTATTGCTACAGATTTTGGTTAAG--AACATCCCT 1279 consensus_13349#2 GTGGCAACTGGAGTCATGGATTTCTTTATTGCTACAGATTTTGGTTAAG--AACATCCCT 688 * * ** * * *** * * ** *** * ** ** * * consensus_13349#0 TGGCCGTTAGTTGCATGACAGCCTTTCCAACATGCTGCTGCCTAGCCGTAGTTCTCCCAA 1740 consensus_13349#3 TGGCCGTTAGTTGCAAAAA----------------------------------------- 593 consensus_13349#1 TGTGAATTTGTCATATACTTCTGAAGCTTGGTTGCTTTGTCTTGGTTACTGGTACTCTGG 1339 consensus_13349#2 TGTGAATTTGTCATAAAAAAAGGA------------------------------------ 712 ** ** ** * consensus_13349#0 AAATGAAACCATCTTGAGATCCGTTTGCGGTTGAACTGAAATTAGACGGTATCTCTGGTT 1800 consensus_13349#3 ------------------------------------------------------------ consensus_13349#1 GAAAATGGCAATTTATGATATAAATTTCAATTAGCTAAAAA------------------- 1380 consensus_13349#2 ------------------------------------------------------------ consensus_13349#0 TCAACATCATCCTTTAAACCCTGGATGAAAGATTTGCAAT 1840 consensus_13349#3 ---------------------------------------- consensus_13349#1 ---------------------------------------- consensus_13349#2 ---------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||