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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13362#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1684 fasta sequence
[GCCGCAAGCACGCGACGCGACGGCGAGGCCACACGACCTCACCTCGCCACCATGCGGCTCCCCGGCGACGCTCGCCTCGCCCTCCTCCTCGCTCGCCGCCGCGCCCTCCCCTCCTCCTCGCCCGCCGCGTCGGCGTCCCCCTTCCACGGCTCGCGCGCCCACGGAGCGAGGTGGGGCGACGCGTTTCGCGCCGCGGCTCCCGCGTGGAGGTCGCCGTTCTCCTCGCCGACTAGTGCCAGGCTCTTCCACGGGACGAGGCCGGTGGCAGCGAGGGACTACTACGATGTGCTCGGCGTGAGCAGGAACGCGAGCCAGGGGGAGATCAAGAAAGCGTATTACGCGCTTGCGAAAAAGCTCCATCCGG-ATACAAATAAAGGTGATTCTGATGCAGAGAGGAAGTTTCAAGAGGTTCAGCGAGCTTATGAGACTTTGAAGGATGATCAGAAGAGATCATTATATGATCAGGTTGGCCCTGATCAGTATGAGAAAGCTTCCGCTGGAGGAGGACCTGGTGGTGCATATGAAGGGGGTTTTGGCAATCCGTTTGAGGATATTTTTGGTGGAGGTGGCGGCGGCGGTGGAATGAATGATTTCTTTAGAAACATATTCAGAGAGAGAGAATTTAGCGGGCATGATGCCAAGGTTGCACTTGAAATATCATTTATGGAAGCAGTTCAGGGGTGCACAAAGACGATCAATTTTCAGAC-TGCTGTTACATGTGACACCTGCAAGGGAGCTGGCGTACCCCCTGGAACCAAACCTGAAACTTGCCTAGCCTGCAGGGGTTCAGGATTTATCTTCATGCAAACTGGTCCCTTCAGGATGCAATCAACATGCACACAGTGTGGTGGTAGTGGGAAGACTGTGAAGGAATTCTGCAAGTCATGCAAAGGAAGGAAAGTTGTGCCAGGAACAAAAAACATCCGACTCAACATAGTGCCTGGTACGGATGATGGTGACGTTATAAAGTTGGTTAGATCAGGTGGAGCAGATCCAGATGGTGGTAGTCCTGGTGATCTTTATGTAACTCTGAAGGTTCGTGAGGATCCGGTATTTCGAAGAGAGAAAGGTGATATTCATGTAGATGCTGTATTGAACGTGACTCAGG-CAATTTTGGGCGGGACAGTTCA-GGTTCCAACTCTCTCTGGAGA-TG-TAG-TT-CTAAAGGT-CAAGCCT-GGTACTCAGCCTG-G-CCAAAA-GGTG-GTTCTGAGAGGA-AAAGGAATCAAGACGAGAAATTCATCGTACTATGGAGATCAGTATGTCCACTTCAATGTCAACAT-CCCTGCGAATTTGACA-CCGAG-ACA-GCGCGTGCTGATCGAGGAATTTGCGAAGGAAGAGCAAG-CTGAAG-AGGAG--A-AAGACGCA-AAGGCAGCAGGAGCATCGGGATAGCTGATTTTAGGAGCG-ACCCGTACATTTGATTAGTGCTTTAGTCTCAT-CATATATCG-CGAGATAGAATAGGCTGCTGC-CTGAAATTTGCAGGGG-CAAGAAGATATAGTTTGGTTGGATG-CATGGAATTTTACATGCC-GACATATAGCAGTTTCAAATTTTGTAGCTGGGAATAATATACACCACG-CCGCCTGATGTTTGCAATCTCCTAATGTCACTAGCATCAGTGAGACAGGCGGCAGG-ATCCTGTATTGTATAATTTTGTGTG-TTAAGAAAGTATGGAACTCACGGTACCCAAAAAAAAAAA]
[+] EMBL AK058985 [GCCGCAAGCACGCGACGCGACGGCGAGGCCACACGACCTCACCTCGCCACCATGCGGCTCCCCGGCGACGCTCGCCTCGCCCTCCTCCTCGCTCGCCGCCGCGCCCTCCCCTCCTCCTCGCCCGCCGCGTCGGCGTCCCCCTTCCACGGCTCGCGCGCCCACGGAGCGAGGTGGGGCGACGCGTTTCGCGCCGCGGCTCCCGCGTGGAGGTCGCCGTTCTCCTCGCCGACTAGTGCCAGGCTCTTCCACGGGACGAGGCCGGTGGCAGCGAGGGACTACTACGATGTGCTCGGCGTGAGCAGGAACGCGAGCCAGGGGGAGATCAAGAAAGCGTATTACGCGCTTGCGAAAAAGCTCCATCCGG ATACAAATAAAGGTGATTCTGATGCAGAGAGGAAGTTTCAAGAGGTTCAGCGAGCTTATGAGACTTTGAAGGATGATCAGAAGAGATCATTATATGATCAGGTTGGCCCTGATCAGTATGAGAAAGCTTCCGCTGGAGGAGGACCTGGTGGTGCATATGAAGGGGGTTTTGGCAATCCGTTTGAGGATATTTTTGGTGGAGGTGGCGGCGGCGGTGGAATGAATGATTTCTTTAGAAACATATTCAGAGAGAGAGAATTTAGCGGGCATGATGCCAAGGTTGCACTTGAAATATCATTTATGGAAGCAGTTCAGGGGTGCACAAAGACGATCAATTTTCAGAC TGCTGTTACATGTGACACCTGCAAGGGAGCTGGCGTACCCCCTGGAACCAAACCTGAAACTTGCCTAGCCTGCAGGGGTTCAGGATTTATCTTCATGCAAACTGGTCCCTTCAGGATGCAATCAACATGCACACAGTGTGGTGGTAGTGGGAAGACTGTGAAGGAATTCTGCAAGTCATGCAAAGGAAGGAAAGTTGTGCCAGGAACAAAAAACATCCGACTCAACATAGTGCCTGGTACGGATGATGGTGACGTTATAAAGTTGGTTAGATCAGGTGGAGCAGATCCAGATGGTGGTAGTCCTGGTGATCTTTATGTAACTCTGAAGGTTCGTGAGGATCCGGTATTTCGAAGAGAGAAAGGTGATATTCATGTAGATGCTGTATTGAACGTGACTCAGG CAATTTTGGGCGGGACAGTTCA GGTTCCAACTCTCTCTGGAGA TG TAG TT CTAAAGGT CAAGCCT GGTACTCAGCCTG G CCAAAA GGTG GTTCTGAGAGGA AAAGGAATCAAGACGAGAAATTCATCGTACTATGGAGATCAGTATGTCCACTTCAATGTCAACAT CCCTGCGAATTTGACA CCGAG ACA GCGCGTGCTGATCGAGGAATTTGCGAAGGAAGAGCAAG CTGAAG AGGAG A AAGACGCA AAGGCAGCAGGAGCATCGGGATAGCTGATTTTAGGAGCG ACCCGTACATTTGATTAGTGCTTTAGTCTCAT CATATATCG CGAGATAGAATAGGCTGCTGC CTGAAATTTGCAGGGG CAAGAAGATATAGTTTGGTTGGATG CATGGAATTTTACATGCC GACATATAGCAGTTTCAAATTTTGTAGCTGGGAATAATATACACCACG CCGCCTGATGTTTGCAATCTCCTAATGTCACTAGCATCAGTGAGACAGGCGGCAGG ATCCTGTATTGTATAATTTTGTGTG TTAAGAAAGTATGGAAC ]
[+] EMBL AK120746 [ ACACGACCTCACCTCGCCACCATGCGGCTCCCCGGCGACGCTCGCCTCGCCCTCCTCCTCGCTCGCCGCCGCGCCCTCCCCTCCTCCTCGCCCGCCGCGTCGGCGTCCCCCTTCCACGGCTCGCGCGCCCACGGAGCGAGGTGGGGCGACGCGTTTCGCGCCGCGGCTCCCGCGTGGAGGTCGCCGTTCTCCTCGCCGACTAGTGCCAGGCTCTTCCACGGGACGAGGCCGGTGGCAGCGAGGGACTACTACGATGTGCTCGGCGTGAGCAGGAACGCGAGCCAGGGGGAGATCAAGAAAGCGTATTACGCGCTTGCGAAAAAGCTCCATCCGG ATACAAATAAAGGTGATTCTGATGCAGAGAGGAAGTTTCAAGAGGTTCAGCGAGCTTATGAGACTTTGAAGGATGATCAGAAGAGATCATTATATGATCAGGTTGGCCCTGATCAGTATGAGAAAGCTTCCGCTGGAGGAGGACCTGGTGGTGCATATGAAGGGGGTTTTGGCAATCCGTTTGAGGATATTTTTGGTGGAGGTGGCGGCGGCGGTGGAATGAATGATTTCTTTAGAAACATATTCAGAGAGAGAGAATTTAGCGGGCATGATGCCAAGGTTGCACTTGAAATATCATTTATGGAAGCAGTTCAGGGGTGCACAAAGACGATCAATTTTCAGAC TGCTGTTACATGTGACACCTGCAAGGGAGCTGGCGTACCCCCTGGAACCAAACCTGAAACTTGCCTAGCCTGCAGGGGTTCAGGATTTATCTTCATGCAAACTGGTCCCTTCAGGATGCAATCAACATGCACACAGTGTGGTGGTAGTGGGAAGACTGTGAAGGAATTCTGCAAGTCATGCAAAGGAAGGAAAGTTGTGCCAGGAACAAAAAACATCCGACTCAACATAGTGCCTGGTACGAATGATGGTGACGTTATAAAGTTGGTTAGATCAGGTGGAGCAGATCCAGATGGTGGTAGTCCTGGTGATCTTTATGTAACTCTGAAGGTTCGTGAGGATCCGGTATTTCGAAGAGAGAAAGGTGATATTCATGTAGATGCTGTATTGAACGTGACTCAGG CAATTTTGGGCGGGACAGTTCA GGTTCCAACTCTCTCTGGAGA TG TAG TT CTAAAGGT CAAGCCT GGTACTCAGCCTG G CCAAAA GGTG GTTCTGAGAGGA AAAGGAATCAAGACGAGAAATTCATCGTACTATGGAGATCAGTATGTCCACTTCAATGTCAACAT CCCTGCGAATTTGACA CCGAG ACA GCGCGTGCTGATCGAGGAATTTGCGAAGGAAGAGCAAG CTGAAG AGGAG A AAGACGCA AAGGCAGCAGGAGCATCGGGATAGCTGATTTTAGGAGCG ACCCGTACATTTGATTAGTGCTTTAGTCTCAT CGTATATCG CGAGATAGAATAGGCTGCTGC CTGAAATTTGCAGGGG CAAGAAGATATAGTTTGGTTGGATG CATGGAATTTTACATGCC GACATATAGCAGTTTCAAATTTTGTAGCTGGGAATAATATACACCACG CCGCCTGATGTTTGCAATCTCCTAATGTCACTAGCATCAGTGAGACAGGCGGCAGG ATCCTGTATTGTATAATTTTGTGTG TTAAGAAAGTATGGAACTCACG ]
[+] EMBL CB619549 [ CGCTCCCCTTAAACTCCTCCTCGCTCGCCGCCGCGCCCTCCCCTCCTCCTCGCCCGCCGCGTCGGCGTCCCCCTTCCACCCCTCGCGCGCCCACGGAGCGAGGTGGGGCGACGCGTTTCGCGCCGCGGCTCCCGCGTGGAGGTCGCCGTTCTCCTCGCCGACTAGTGCCAGGCTCTTCCACGGGACGAGGCCGGTGGCAGCGAGGGACTACTACGATGTGCTCGGCGTGAGCAGGAACGCGAGCCAGGGGGAGATCAAGAAAGCGTATTACGCGCTTGCGAAAAAGCTCCATCCGG ATACAAATAAAGGTGATTCTGATGCAGAGAGGAAGTTTCAAGAGGTTCAGCGAGCTTATGAGACTTTGAAGGATGATCAGAAGAGATCATTATATGATCAGGTTGGCCCTGATCAGTATGAGAAAGCTTCCGCTGGAGGAGGACCTGGTGGTGCATATGAAGGGGGTTTTGGCAATCCGTTTGAGGATATTTTTGGTGGAGGTGGCGGCGGCGGTGGAATGAATGATTTCTTTAGAAACATATTCAGAGAGAGAGAATTTAGCGGGCATGATGCCAAGGTTGCACTTGAAATATCATTTATGGAAGCAGTTCAGGGGTGCACAAAGACGATCAATTTTCAGAC TGCTGTTACATGTGACACCTGCAAGGGAGCTGGCGTACCCCCTGGAACCAAACCTGAAACTTGCCTAGCCTGCAGGGGTTCAGGATTTATCTTCATGCAAACTGGTCCCTTCAGGATGCAATCAA ]
[+] EMBL AU181927 [ TCCATCCGGNATACAAATAAAGGTGATTCTGATGCAGAGAGGAAGTTTCAAGAGGTTCAGCGAGCTTATGAGACTTTGAAGGATGATCAGAAGAGATCATTATATGATCAGGTTGGCCCTGATCAGTATGAGAAAGCTTCCGCTGGAGGAGGACCTGGTGGTGCATATGAAGGGGGTTTTGGCAATCCGTTTGAGGATATTTTTGGTGGAGGTGGCGGCGGCGGTGGAATGAATGATTTCTTTAGAAACATATTCAGAGAGAGAGAATTTAGCGGGCATGATGCCAAGGTTGCACTTGAAATATCATTTATGGAAGCAGTTCAGGGGTGCACAAAGACGATCAATTTTCAGAC TGCTGTTACATGTGACACCTGCAAGGGAGCTGGCGTACCCCCTGGAACCAAACCTGAAACTTGCCTAGCCTGCAGGGGTTCAGGATTTATCTTCATGCAAACTGGTCCCTTCAGGATGCAATCAACATGCACACAGTGTGGTGGTAGTGGGAAGACTGTGAAGGAATTCTGCAAGTCATGCAA ]
[+] EMBL C28588 [ CCATCCGG ATACAAATAAAGGTGATTCTGATGCAGAGAGGAAGTTTCAAGAGGTTCAGCGAGCTTATGAGACTTTGAAGGATGATCAGAAGAGATCATTATATGATCAGGTTGGCCCTNATCAGTATGAGAAAGCTTCCGCTGGAGGAGGACCTGGTGGTGCATATGAAGGGGGTTTTGGCAATCCGTTTGAGGATATTTTTGGTGGAGGTGGCGGCGGCGGTGGAATGAATGATTTCTTTAGAAACATATTCAGAGAGAGAGAATTTAGCGGGCATGATGCCAAGGTTGCACTTGAAATATCATTTATGGAAGCAGTTCAGGGGTGCACAAAGACGATCAATTTTCAGACTTNCTGTTACATGTGACACCTGCAAGGGAGCTGGCGTACCCCCTGGAACCAAACCTGAAACTTG ]
[+] EMBL C98954 [ ATGATCAGAAGAGATCATTATATGATCAGGTTGGCCCTGATCAGTATGAGAAAGCTTCCGCTGGAGGAGGACCTGGTGGTGCATATGAAGGGGGTTTTGGCAATCCGTTTGAGGATATTTTTGGTGGAGGTGGCGGCGGCGGTGGAATGAATGATTTCTTTAGAAACATATTCAGAGAGAGAGAATTTAGCGGGCATGATGCCAAGGTTGCACTTGAAATATCATTTATGGAAGCAGTTCAGGGGTGCACAAAGACGATCAATTTTCAGAC TGCTGTTACATGTGACACCTGCAAGGGAGCTGGCGTACCCCCTGGAACCAAACCTGAAACTTGCCTAGCCTGCAGGGGTTCAGGA TTATCTTCATGCAAACTGGTCCCTTCAGGATGCAATCAACATGCACACAGTGTGGTGGTAATGGGAAGACTGTGAAGGAATct ]
[+] EMBL AU063333 [ GCCAAGGTTGCACTTGAAATATCATTTATGGAAGCAGTTCAGGGGTGCACAAAGACGATCAATTTTCAGAT TGCTGTTACATGTGACACCTGCAA GGAGCTGGCGTACCCCCTGGAACCAAACCTGAAACTTGCCTAGCCTGCAGGGGTTCAGGATTTATCTTCATGCAAACTGGTCCCTTCAGGATGCAATCAACATGCACACAGTGTGGTGGTAGTGGGAAGACTGTGAAGGAATTCTGCAAGTCATGCAAAGGAAGGAAAGTTGTGCCAGG ACAAAAACCATCCGACTCAACATAGTGCCTGGTACGGATGATGGTGACGTTATAAAGTTGGTTAG TCAGGTGGAGCAGATCCAGATGGTGGTAGNCCTGGTGATCTTTATGTAACTCT ]
[+] EMBL AU063335 [ tnCAAGGTTGCACTTGAAATATCATTTATGGAAGCAGTTCAGGGGTGCACAAAGACGATCAATTTTCAGAT TGCTGTTACATGTGACACCTGCAA GGAGCTGGCGTACCCCCTGGAACCAAACCTGAAACTTGCCTAGCCTGCAGGGGTTCAGGATTTATCTTCATGCAAACTGGTCCCTTCAGGATGCAATCAACATGCACACAGTGTGGTGGTAGTGGG ANNCTGTNAAGGAATTCTGCAAGTCATGCAAAGGAAGGAAAGTTGTGCCAGGACCAAAAAACATCCGACTCAACATAGTGCCTGGTACGGATGATGGTGACG TATAAAGTTGG TAG TCA GTGGAGCAGATCCA ]
[-] EMBL CB619550 [ AGATCAGGTGGAGCAGATCCAGATGGTGGTAGTCCTGGTGATCTTTATGTAACTCTGAAGGTTCGTGAGGATCCGGTATTTCGAAGAGAGAAAGGTGATATTCATGTAGATGCTGTATTGAACGTGACTCAGG CAATTTTGGGCGGGACAGTTCA GGTTCCAACTCTCTCTGGAGA TG TAG TT CTAAAGGT CAAGCCT GGTACTCAGCCTG G CCAAAA GGTG GTTTTGAGAGGA AAAGGAATCAAGACGAGAAATTCATCGTACTATGGAGATCAGTATGTCCACTTCAATGTCAACAT CCCTGGGAATTTGACA CCGAG ACA GCGCGTGCTGATCGAGGAATTTGCGAAGGAAGAGCAAG CTGAAG AGGAG A AAGACGCA AAGGCAGCAGGAGCATCGGGATAGCTGATTTTAGGAGCG ACCCGTACATTTGATTAGTGCTTTAGTCTCAT CATATATCG CGAGATAGAATAGGCTGCTGC CTGAAATTTGCAGGGG CAAGAAGATATAGTTTGGTTGGATG CATGGAATTTTACATGCC GACATATAGCAGTTTCAAATTTTGTAGCTGGGAATAATATACACCACG CCGCCTGATGTTTGCAATCTCCTAATGTCACTAGCATCATTGGGGCAGGCGGCAGG ATCCTGTATTGTATAATTTTGTGTG TTAAGAAAGTATGGAACTCCCGGTGCCC ]
[+] EMBL BQ905920 [ CAGGCCAATTTTGGGCGGGACAGTTCAGGGTTCCAACTCTCTCTGGAGATTG TAG TT CTAAAGGT CAAGCCT GGTACTCAGCCTG G CCAAAA GGTG GTTCTGAGAGGA AAAGGAATCAAGACGAGAAATTCATCGTACTATGGAGATCAGTATGTCCACTTCAATGTCAACAT CCCTGCGAATTTGACA CCGAG ACA GCGTGCTGATCGAGGAATTTGCGAAGGAAGAGCAAG CTGAAG AGGAG A AAGACGCA AAGGCAGCAGGAGCATCGGGATAGCTGATTTTAGGAGCG ACCCGTACATTTGATTAGTGCTTTAGTCTCAT CATATATCG CGAGATAGAATAGGCTGCTGC CTGAAATTTGCAGGGG CAAGAAGATATAGTTTGGTTGGATG CATGGAATTTTACATGCC GACATATAGCAGTTTCAAATTTTGTAGCTGGGAATAATATACACCACG CCGCCTGATGTTTGCAATCTCCTAATGTCACTAGCATCAGTGAGACAGGCGGCAGG ATCCTGTATTGTATAATTTTGTGTG TTAAGAAAGTATGGAACTCACGGTACCCAAAAAAAAAAA]
[+] EMBL BM419152 [ naA TGTTAG TTCCTAAAGGTCCAAGCCTGGGTACTCAGCCTGCGCCCAAAAGGGTGTGTTCTGAGAGGATAAAGTAATCAAGACGAGAAATTCATCGTACTATGGAGATCAGTATGTCCACTTCAATGTCAACATCCCCTGCGAATTTGACACCCGAGTACACGCGCGTGCTGATCGAGGAATTTGCGAAGGAAGAGCAAGCCTGAAGTAGGAG ATAAGACGCA AAGGCAGCAGGAGCATCGGGATAGCTGATTTTAGGAGCGTACCCGTACATTTGATTAGTGCTTTAGTCTCAT CATATATCGCCGAGATAGAATAGGCTGCTGC CTGAAATTTGCAGGGG CAAGAAGATATAGTTTGGTTGGATGCCATGGAATTTTACATGCC GACATATAGCAGTTTCAAATTTTGTAGCTGGGAATAATATACACCACGCCCGCCTGATGTTTGCAATCTCCTAATGTCACTAGCATCAGTGAGACAGGCGGCAGG ATCCTGTATTGTATAATTTTGTGTG TTAAGAAAGTATGGAACTCCCGGTCCCCAA ]
[+] EMBL BI797075 [ A TGTTAGTTT CTAAAGGT CAAGCCT GGTACTCAGCCT G CCAAA GTG GTTCTGAGAGGA AAAGGAATCAAGACGAGAAATTCATCGTACTATGGAGATCAGTATGTCCACTTCAATGTCAACAT CCCTGCGAATTTGACA CCGAG ACA GCGCGTGCTGATCGAGGAATTTGCGAAGGAAGAGCAAG CTGAAG AGGAGTTA ATGACGCATAAGTCAGCAGGAGCATCGGGATAGCTGATTTTAGGAGCG ACCCGTACATTTGATTAGTGCTGTAGTCTCATGCATATATCG CGAGATAGAATAGGCTGCTGCACTGAAATTTGCAGGGGCCAAGAAGATATAGTTTGGTTGGATG CATGGAATTTTACATGCCAGACATATAGCAGTTTCAAATTTTGTAGCTGGGAATAATATACACCACG CCGCCTGATGTTT CAATCTCCTAATGTCACTAGCATCAGTGAGACA GCGGCAGGTATCCTGTATTGTATAATTTTGTCTGCTTAAGAAAGTATGGAACTCACGGTACCAAAA ]
[+] EMBL AA750813 [ GGGG CAAGAAGATATAGTTTGGTTGGATG CATGGAATTTTACATGCC GACATATAGCAGTTTCAAATTTTGTAGCTGGGAATAATATACACCACGTCCGCCTGATGTTTGCAATCTCCTAATGTCACTAGCATCAGTGAGACAGGCGGCAGG ATCCTGTATTGTATAATTTTGTGTG TTAAGAAAGTATGGAACTCACGGTACCaa ]
clustalw multiple alignements is not computed in this case |
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||