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Oryza sativa
cluster # 13368 cluster # 13368       Sequences # 13       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13368#0 length = 917 sequences # 11  
consensus_13368#1 length = 632 sequences # 1  
consensus_13368#2 length = 501 sequences # 1  

consensusID : consensus_13368#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 11
consensus length = 917
fasta sequence
                              [CCTCGAGCTCACTCCGCACCGCAGCCATGGCGACCGCCACCTCCACGCTCTTCTCCCTCTCCTCCCTCTCCGCCTCTCTCCCTTCCCCCGCGCAGCCAGCCCCGGCGTCTCTCTCCCTCCGCGCCGTCTCCCCGCGGGCCCGCCTGTCCGCCTCCTACGCCGCCTTCCCCATCGGTGGGATCGGGGCATGGGCGGCGGCGACGCCGGC-GTCGTCGGGGAGGTGGAGGAGGAGGGGACTGGAGGTGGTGTGCGAGGCGGCCAAGACCGGCACCGCGACCGGGAGGCGCCCGGACTCGGTCAAGAAGAGGGAGCGGCAGAACGACCGGCACCGCATCCGCAACCATGCACGCAAGGCCGAGATGCGCACCAGGATGAAGAAGGTTTTGAAAGCCCTTGAAAAGCTGAGAAAGAAAGCTGATGCCACACCTGAAGATATCATTCAAATAGAGAAATGGATTTCTGAGGCATACAAAGCCATTGACAAGACAGTGAAGGTTGGCGCCATGCACAGGAATACTGGTAACCATCGCAAGTCCCTTCTTGCGAGGAGGAAGAAGGCCATCGAGATACTCCGTGGTTGGTATGTTCCAAACGCTGAACCTGCTGCTACCAGCTAGTCTATTGACAAATCGTCTTCAGGAATTCGCAGCAGATTCATTGTCAACACGTCTTGCCAATTTTGGACATGCATATGTTGTTTAAGGAATTAAATAGCTTTGTTATATTCTCTCCATTCCAAGCGATGTGTATACCTTTGGTCCATGTTATGTGTTCATGTTCTTGCTCTGGAAGCCTTGAAACAGAACTGGGCCAATACTTTTCTCCCACTTCTGTTATCCTTCACATCAGTG-TTGTAAAATGACAAGCTGAAATATTTTTTTTCTATGGTAAGGATGTTTTCAAAGTAAAAAAAAAAA]

[+] EMBL AK120629             [CCTCGAGCTCACTCCGCACCGCAGCCATGGCGACCGCCACCTCCACGCTCTTCTCCCTCTCCTCCCTCTCCGCCTCTCTCCCTTCCCCCGCGCAGCCAGCCCCGGCGTCTCTCTCCCTCCGCGCCGTCTCCCCGCGGGCCCGCCTGTCCGCCTCCTACGCCGCCTTCCCCATCGGTGGGATCGGGGCATGGGCGGCGGCGACGCCGGC GTCGTCGGGGAGGTGGAGGAGGAGGGGACTGGAGGTGGTGTGCGAGGCGGCCAAGACCGGCACCGCGACCGGGAGGCGCCCGGACTCGGTCAAGAAGAGGGAGCGGCAGAACGACCGGCACCGCATCCGCAACCATGCACGCAAGGCCGAGATGCGCACCAGGATGAAGAAGGTTTTGAAAGCCCTTGAAAAGCTGAGAAAGAAAGCTGATGCCACACCTGAAGATATCATTCAAATAGAGAAATGGATTTCTGAGGCATACAAAGCCATTGACAAGACAGTGAAGGTTGGCGCCATGCACAGGAATACTGGTAACCATCGCAAGTCCCTTCTTGCGAGGAGGAAGAAGGCCATCGAGATACTCCGTGGTTGGTATGTTCCAAACGCTGAACCTGCTGCTACCAGCTAGTCTATTGACAAATCGTCTTCAGGAATTCGCAGCAGATTCATTGTCAACACGTCTTGCCAATTTTGGACATGCATATGTTGTTTAAGGAATTAAATAGCTTTGTTATATTCTCTCCATTCCAAGCGATGTGTATACCTTTGGTCCATGTTATGTGTTCATGTTCTTGCTCTGGAAGCCTTGAAACAGAACTGGGCCAATACTTTTCTCCCACTTCTGTTATCCTTCACATCAGTG TTGTAAAATGACAAGCTGAAATATTTTTTTTCTATGGTAAGGATG                     ]
[+] EMBL AK063019             [   CGAGCTCACTCCGCACCGCAGCCATGGCGACCGCCACCTCCACGCTCTTCTCCCTCTCCTCCCTCTCCGCCTCTCTCCCTTCCCCCGCGCAGCCAGCCCCGGCGTCTCTCTCCCTCCGCGCCGTCTCCCCGCGGGCCCGCCTGTCCGCCTCCTACGCCGCCTTCCCCATCGGTGGGATCGGGGCATGGGCGGCGGCGACGCCGGC GTCGTCGGGGAGGTGGAGGAGGAGGGGACTGGAGGTGGTGTGCGAGGCGGCCAAGACCGGCACCGCGACCGGGAGGCGCCCGGACTCGGTCAAGAAGAGGGAGCGGCAGAACGACCGGCACCGCATCCGCAACCATGCACGCAAGGCCGAGATGCGCACCAGGATGAAGAAGGTTTTGAAAGCCCTTGAAAAGCTGAGAAAGAAAGCTGATGCCACACCTGAAGATATCATTCAAATAGAGAAATGGATTTCTGAGGCATACAAAGCCATTGACAAGACAGTGAAGGTTGGCGCCATGCACAGGAATACTGGTAACCATCGCAAGTCCCTTCTTGCGAGGAGGAAGAAGGCCATCGAGATACTCCGTGGTTGGTATGTTCCAAACGCTGAACCTGCTGCTACCAGCTAGTCTATTGACAAATCGTCTTCAGGAATTCGCAGCAGATTCATTGTCAACACGTCTTGCCAATTTTGGACATGCATATGTTGTTTAAGGAATTAAA                                                                                                                                                                                                               ]
[+] EMBL CF325669             [            TCCGCACCGCAGCCATGGCGACCGCCACCTCCACGCTCTTCTCCCTCTCCTCCCTCTCCGCCTCTCTCCCTTCCCCCGCGCAGCCAGCCCCGGCGTCTCTCTCCCTCCGCGCCGTCTCCCCGCGGGCCCGCCTGTCCGCCTCCTACGCCGCCTTCCCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL C27247               [                             GCGACCGCCACCTCCACGCTCTTCTCCCTCTCCTCCCTCTCCGCCTCTCTCCCTTCCCCCGCGCAG CAGCCCCGGCGTCTCTCTCCCTCCGCGCCGTCTCCCCGCGGGCCCGCCTGTCCGCCTCCTACGCCGCCTTCCCCATCGGTGGGATCGGGGCATGGGCGGCGGCGACG  GGCGGTCGTCGGGGAGGTGGAGGAGGAGGGGACTGGAGGTGGTGTGCGAGGCGGCCAAGACCGGCACCGCGACCGGAAGGCGCCCGGACTCGGTCAAGAAGAGGGAGCGGCAGAACGACCGGCACCGCATCCGCAACCATGCACGNAAGGCCGAGATGCGCACCAGGATna                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AU085703             [                                                                                                                                                                                                                     TCGGGAAGTTGGAGGAGGAGGGGACTGGAGTTGGTGTGCGAGNCGGCCAAGACCGGCACCGCGACCGGGAGGCGCCCGGACTCGNTCAAGAAGAGGGAGCGGCAGAACGACCGGCACCGCATCCGCAACCATGCACGCAAGGCCGAGATGCGCACCAGGATGAAGAAGGTTTTGAAAGCCCTTGAAAAGCTGAGAAAGAAAGCTGATGCCACACCTGAAGATATCATTCAAATAGAGAAATGGATTTCTGAGGCATACAAAGCCATTGACAAGACAGTGAAGGTTGGCGCCATGCACAGGAATACTGGTAACCATCGCAAGTCCCTTCTTGCGAGGAGGAAGAAGGCCATCGAGATACTCCGTGGTTGGTATGTTCCAAACGCTGAACCTGCTGCTACCAGCTAGTCTATTGACAAATCGTCTTCAGGAATTCGCAGCAGATTCATTGTCA  ACGTCTTGCCAATTTTGGACATGCATATGTTGTTTAAGGAATTAAATAGCTTTGTTATATTCTCTCCATTCCAAGCGATGTGTATACCTTTGGTCCATGTTATGTGTTCATGTTCTTGCTCTGGAAGCCTTGAAACAGAACTGGGCCAATACTTTTCTCCCACTTCTGTTATCCTTCACATCAGTG TTGTAAAATGACAAGCTGAAATATTTTTTTTCTATGGTAAGGATGTTTTCAAAGTAAAAA      ]
[-] EMBL CB679805             [                                                                                                                                                                                                                                                                    CAAGACCGGCACCGCGACCGGGAGGCGCCCGGACTCGGTCAAGAAGAGGGAGCGGCAGAACGACCGGCTCCGCATCCGCAACCATGCACGCAAGGCCGAGATGCGCACCAGGATGAAGAAGGTTTTGAAAGCCCTTGAAAAGCTGAGAAAGAAAGCTGATGCCACACCCGAAGATATCATTCAAATAGAGAAATGGATTTCTGAGGCATACAAAGCCATTGACAAGACAGTGAAGGTTGGCGCCATGCACAGGAATACTGGTAACCATCGCAAGTCCCTTCTTGCGAGGAGGAAGAAGGCCATCGAGATACTCCGTGGTTGGTATGTTCCAAACGCTGAACCTGCTGGTACCAGCTAGTCTATTGACAAATCGTCTTCAGGAATTTGCAGCAGATTCATTGTCAACACGTCTTGCCAATTTTGGACATGCATATGTTGTTTAAGGAATTAAATAGCTTTGTTATATTCTCTCCATTCCAAGCGATGTGTATACCTTTGGTCCATGTTATGTGTTCATGTTCTTGCTCTGGAAGCCTTGAAACAGAACTGGGCCAATACTTTTCTCCCACTTCTGTTATCCTTCACATCAGTG TTGTAAAATGACAAGCTGAAATATTTTTTTTCTAT                               ]
[+] EMBL CB679804             [                                                                                                                                                                                                                                                                            GCACCGCGACCGGGAGGCGCCCGGACTCGGTCAAGAAGAGGGAGCGGCAGAACGACCGGCACCGCATCCGCAACCATGCACGCAAGGCCGAGATGCGCACCAGGATGAAGAAGGTTTTGAAAGCCCTTGAAAAGCTGAGAAAGAAAGCTGATGCCACACCTGAAGATATCATTCAAATAGAGAAATGGATTTCTGAGGCATACAAAGCCATTGACAAGACAGTGAAGGTTGGCGCCATGCACAGGAATACTGGTAACCATCGCAAGTCCCTTCTTGCGAGGAGGAAGAAGGCCATCGAGATACTCCGTGGTTGGTATGTTCCAAACGCTGAACCTGCTGCTACCAGCTAGTCTATTGACAAATCGTCTTCAGGAATTCGCAGCAGATTCATTGTCAACACGTCTTGCCAATTTTGGACATGCATATGTTGTTTAAGGAATTAAATAGCTTTGTTATATTCTCTCCATTCCAAGCGATGTGTATACCTTTGGTCCATGTTATGTGTTCATGTTCTTGCTCTGGAAGCCTTGAAACAGAACTGGGCCAATACTTTTCTCCCACTTCTGTTATCCTTCACATCAGTG TTGTAAAATGACAAGCTGAAATATTTTT                                      ]
[-] EMBL BI306666             [                                                                                                                                                                                                                                                                                                                                                                                                     AGCCCTTGAAAAGCTGAGAAAGAAAGCTGATGCCACACCTGAAGATATCATTCAAATAGAGAAATGGATTTCTGAGGCATACAAAGCCATTGACAAGACAGTGAAGGTTGGCGCCATGCACAGGAATACTGGTAACCATCGCAAGTCCCTTCTTGCGAGGAGGAAGAAGGCCATCGAGATACTCCGTGGTTGGTATGTTCCAAACGCTGAACCTGCTGCTACCAGCTAGTTTATTGACAAATCGTTTTCAGGAATTTGCAGCAGATTCATTGTCAACACGTCTTGCCAATTTTGGACATGCATATGTTGTTTAAGGAATTAAAAAGCTTTGTTATATTCTCTCCATTCCAAGCGATGTGTAAACCTTTGGTCCATGTTATGTGTTCATGTTCTTGCTCTGGAAGCCTTGAAACAGAACTGGGCCAATACTTTTCTCCCACTTCTGTTATCCTTCACATCAGTG TTGTAAAATGACAAGCTGAAAAATTTTTTTTTTATGGTAAAGATGT                    ]
[+] EMBL OSC8401              [                                                                                                                                                                                                                                                                                                                                                                                                                                            TGAAGATATCATTCAAATAGAGAAATGGATTTCTGAGGCATACAAAGCCATTGACAAGACAGTGAAGGTTGGCGCCATGCACAGGAATACTGGTAACCATCGCAAGTCCCTTCTTGCGAGGAGGAAGAAGGCCATCGAGATACTCCGTGGTTGGTATGTTCCAAACGCTGAACCTGCTGCTACCAGCTAGTCTATTGACAAATCGTCTTCAGGAATTCGCAGCAGATTCATTGTCAACACGTCTTGCCAATTTTGGACATGCATATGTTGTTTAAGGAATTAAATAGCTTTGTTATATTCTCTCCATTCCAAGCGATGTGTATACCTTTGGTCCATGTTATGTGTTCATGTTCTTGCTCTGGAAGCCTTGAAACAGAACTGGGCCAATACTTTTCTCCCACTTCTGTAATCCTTCACATCAGTGTTTGTAAAATGACAAGCTGNAATATTTTTTT                                    ]
[+] EMBL AK062194             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ATTTCTGAGGCATACAAAGCCATTGACAAGACAGTGAAGGTTGGCGCCATGCACAGGAATACTGGTAACCATCGCAAGTCCCTTCTTGCGAGGAGGAAGAAGGCCATCGAGATACTCCGTGGTTGGTATGTTCCAAACGCTGAACCTGCTGCTACCAGCTAGTCTATTGACAAATCGTCTTCAGGAATTCGCAGCAGATTCATTGTCAACACGTCTTGCCAATTTTGGACATGCATATGTTGTTTAAGGAATTAAATAGCTTTGTTATATTCTCTCCATTCCAAGCGATGTGTATACCTTTGGTCCATGTTATGTGTTCATGTTCTTGCTCTGGAAGCCTTGAAACAGAACTGGGCCAATACTTTTCTCCCACTTCTGTTATCCTTCACATCAGTG TTGTAAAATGACAAGCTGAAATATTTTTTTTCTATGGTAA                          ]
[+] EMBL AU174096             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        AGTGAAGGTTGGCGCCATGCACAGGAATACTGGTAACCATCGCAAGTCCCTTCTTGCGAGGAGGAAGAAGGCCATCGAGATACTCCGTGGTTGGTATGTTCCAAACGCTGAACCTGCTGCTACCAGCTAGTCTATTGACAAATCGTNTTCAGGAATTCGCAGCAGATTCATTGTCAACACGTCTTGCCAATTTTGGACATGCATATGTTGTTTAAGGAATTAAATAGCTTTGTTATATTCTCTCCATTCCAAGCGATGTGTATACCTTTGGTCCATGTTATGTGTTCATGTTCTTGCTCTGGAAGCCTTGAAACAGAACTGGGCCAATACTTTTCTCCCACTTCTGTTATCCTTCACATCAGTG TTGTAAAATGACAAGCTGAAATATTTTTTTTCTATGGTAAGGATGTTTTCAAAGTAAAAAAAAAAA]


>consensus_13368#0 CCTCGAGCTCACTCCGCACCGCAGCCATGGCGACCGCCACCTCCACGCTCTTCTCCCTCT CCTCCCTCTCCGCCTCTCTCCCTTCCCCCGCGCAGCCAGCCCCGGCGTCTCTCTCCCTCC GCGCCGTCTCCCCGCGGGCCCGCCTGTCCGCCTCCTACGCCGCCTTCCCCATCGGTGGGA TCGGGGCATGGGCGGCGGCGACGCCGGCGTCGTCGGGGAGGTGGAGGAGGAGGGGACTGG AGGTGGTGTGCGAGGCGGCCAAGACCGGCACCGCGACCGGGAGGCGCCCGGACTCGGTCA AGAAGAGGGAGCGGCAGAACGACCGGCACCGCATCCGCAACCATGCACGCAAGGCCGAGA TGCGCACCAGGATGAAGAAGGTTTTGAAAGCCCTTGAAAAGCTGAGAAAGAAAGCTGATG CCACACCTGAAGATATCATTCAAATAGAGAAATGGATTTCTGAGGCATACAAAGCCATTG ACAAGACAGTGAAGGTTGGCGCCATGCACAGGAATACTGGTAACCATCGCAAGTCCCTTC TTGCGAGGAGGAAGAAGGCCATCGAGATACTCCGTGGTTGGTATGTTCCAAACGCTGAAC CTGCTGCTACCAGCTAGTCTATTGACAAATCGTCTTCAGGAATTCGCAGCAGATTCATTG TCAACACGTCTTGCCAATTTTGGACATGCATATGTTGTTTAAGGAATTAAATAGCTTTGT TATATTCTCTCCATTCCAAGCGATGTGTATACCTTTGGTCCATGTTATGTGTTCATGTTC TTGCTCTGGAAGCCTTGAAACAGAACTGGGCCAATACTTTTCTCCCACTTCTGTTATCCT TCACATCAGTGTTGTAAAATGACAAGCTGAAATATTTTTTTTCTATGGTAAGGATGTTTT CAAAGTAAAAAAAAAAA



consensusID : consensus_13368#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 632
fasta sequence
                              [TTTGCTCTTATTCGTCGGTGATGCGAAATGCCTTGTTCAGGTGGGATCGGGGCATGGGCGGCGGCGACGCCGGCGTCGTCGGGGAGGTGGAGGAGGAGGGGACTGGAGGTGGTGTGCGAGGCGGCCAAGACCGGCACCGCGACCGGGAGGCGCCCGGACTCGGTCAAGAAGAGGGAGCGGCAGAACGACCGGCACCGCATCCGCAACCATGCACGCAAGGCCGAGATGCGCACCAGGATGAAGAAGGTAGTACATAAAATGTGGTGCTGCCCTTTCTCGCATTGCCTATGATCCAGAGCTTTCCAATGGTTCCATCCCACTGTAAAAAAAAATGATATAGGAGTACTTAGTTGCACATTGCACGATACACTGTGCAGAGAGAATGGGAAATTAGGCGTAATTAGCTGCGTCAGTGCGTCAATCAGCTCATGAGCAGAGTTTCTTGTTAGTACGCCTTCTTGGAAATGTAGATGGATTTATGTAATGTCCACTGTCCACTGTCAAGCTCCAAAAATGGAGTGAATGTGATTTTAAAAGGTGCTGCTTATTTGAATTATAGTATCAAACTAGTAATGTACCCATGCTAACGCTACGGCGATACTATGTGATAATGTAAATCATACAACCAAAAG]

[+] EMBL AK071536             [TTTGCTCTTATTCGTCGGTGATGCGAAATGCCTTGTTCAGGTGGGATCGGGGCATGGGCGGCGGCGACGCCGGCGTCGTCGGGGAGGTGGAGGAGGAGGGGACTGGAGGTGGTGTGCGAGGCGGCCAAGACCGGCACCGCGACCGGGAGGCGCCCGGACTCGGTCAAGAAGAGGGAGCGGCAGAACGACCGGCACCGCATCCGCAACCATGCACGCAAGGCCGAGATGCGCACCAGGATGAAGAAGGTAGTACATAAAATGTGGTGCTGCCCTTTCTCGCATTGCCTATGATCCAGAGCTTTCCAATGGTTCCATCCCACTGTAAAAAAAAATGATATAGGAGTACTTAGTTGCACATTGCACGATACACTGTGCAGAGAGAATGGGAAATTAGGCGTAATTAGCTGCGTCAGTGCGTCAATCAGCTCATGAGCAGAGTTTCTTGTTAGTACGCCTTCTTGGAAATGTAGATGGATTTATGTAATGTCCACTGTCCACTGTCAAGCTCCAAAAATGGAGTGAATGTGATTTTAAAAGGTGCTGCTTATTTGAATTATAGTATCAAACTAGTAATGTACCCATGCTAACGCTACGGCGATACTATGTGATAATGTAAATCATACAACCAAAAG]


>consensus_13368#1 TTTGCTCTTATTCGTCGGTGATGCGAAATGCCTTGTTCAGGTGGGATCGGGGCATGGGCG GCGGCGACGCCGGCGTCGTCGGGGAGGTGGAGGAGGAGGGGACTGGAGGTGGTGTGCGAG GCGGCCAAGACCGGCACCGCGACCGGGAGGCGCCCGGACTCGGTCAAGAAGAGGGAGCGG CAGAACGACCGGCACCGCATCCGCAACCATGCACGCAAGGCCGAGATGCGCACCAGGATG AAGAAGGTAGTACATAAAATGTGGTGCTGCCCTTTCTCGCATTGCCTATGATCCAGAGCT TTCCAATGGTTCCATCCCACTGTAAAAAAAAATGATATAGGAGTACTTAGTTGCACATTG CACGATACACTGTGCAGAGAGAATGGGAAATTAGGCGTAATTAGCTGCGTCAGTGCGTCA ATCAGCTCATGAGCAGAGTTTCTTGTTAGTACGCCTTCTTGGAAATGTAGATGGATTTAT GTAATGTCCACTGTCCACTGTCAAGCTCCAAAAATGGAGTGAATGTGATTTTAAAAGGTG CTGCTTATTTGAATTATAGTATCAAACTAGTAATGTACCCATGCTAACGCTACGGCGATA CTATGTGATAATGTAAATCATACAACCAAAAG



consensusID : consensus_13368#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 501
fasta sequence
                              [ACTTTTGGACCCACAGTATCCCACGTGAAAAGGGTTTGGGCCGCCCCACTGTCACCACGTGTAATACGCTCGGTATACCCATCTGCGCCAAGTCCCTCTTCTTGNCGCGCAGGGTAGGAACGAGAGGCCACTCGAGGAGTACTCCCGTGGTTGGTATTGTTCCCAACCGCTGAACCTGCTGGCTACCACGTCTAGTCTATTGACCACAATCGTCTTCACGGAATTTGCACGCCAGAGTTCACTTGTCAAACACGTCTTGCCCATTTTGGACACTGCATATGTTGTTTAAGGAATTAAATAGCTTTGTTATATTCTCTCCATTCCACAGCGATGTGTATACCTCTTGGTCCCTGTTATGTGTTCATGTTCTTGCTCTGGAAGCCCTTGAAACAGAACTGGGCCAATACTTTTCTCCCACTTCTGTTATCCTTCACATCAGTGTTGTAAAATGACAAGCTGAAATATTTTTTTTCTATGGTAAAGATGTCTTCAAAAAAAAAA]

[+] EMBL BM419361             [ACTTTTGGACCCACAGTATCCCACGTGAAAAGGGTTTGGGCCGCCCCACTGTCACCACGTGTAATACGCTCGGTATACCCATCTGCGCCAAGTCCCTCTTCTTGNCGCGCAGGGTAGGAACGAGAGGCCACTCGAGGAGTACTCCCGTGGTTGGTATTGTTCCCAACCGCTGAACCTGCTGGCTACCACGTCTAGTCTATTGACCACAATCGTCTTCACGGAATTTGCACGCCAGAGTTCACTTGTCAAACACGTCTTGCCCATTTTGGACACTGCATATGTTGTTTAAGGAATTAAATAGCTTTGTTATATTCTCTCCATTCCACAGCGATGTGTATACCTCTTGGTCCCTGTTATGTGTTCATGTTCTTGCTCTGGAAGCCCTTGAAACAGAACTGGGCCAATACTTTTCTCCCACTTCTGTTATCCTTCACATCAGTGTTGTAAAATGACAAGCTGAAATATTTTTTTTCTATGGTAAAGATGTCTTCAAAAAAAAAA]


>consensus_13368#2 ACTTTTGGACCCACAGTATCCCACGTGAAAAGGGTTTGGGCCGCCCCACTGTCACCACGT GTAATACGCTCGGTATACCCATCTGCGCCAAGTCCCTCTTCTTGNCGCGCAGGGTAGGAA CGAGAGGCCACTCGAGGAGTACTCCCGTGGTTGGTATTGTTCCCAACCGCTGAACCTGCT GGCTACCACGTCTAGTCTATTGACCACAATCGTCTTCACGGAATTTGCACGCCAGAGTTC ACTTGTCAAACACGTCTTGCCCATTTTGGACACTGCATATGTTGTTTAAGGAATTAAATA GCTTTGTTATATTCTCTCCATTCCACAGCGATGTGTATACCTCTTGGTCCCTGTTATGTG TTCATGTTCTTGCTCTGGAAGCCCTTGAAACAGAACTGGGCCAATACTTTTCTCCCACTT CTGTTATCCTTCACATCAGTGTTGTAAAATGACAAGCTGAAATATTTTTTTTCTATGGTA AAGATGTCTTCAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13368#0      CCTCGAGCTCACTCCGCACCGCAGCCATGGCGACCGCCACCTCCACGCTCTTCTCCCTCT 60
consensus_13368#2      ------------------------------------------------------------
consensus_13368#1      ------------------------------------------------------------
                                                                                   

consensus_13368#0      CCTCCCTCTCCGCCTCTCTCCCTTCCCCCGCGCAGCCAGCCCCGGCGTCTCTCTCCCTCC 120
consensus_13368#2      ------------------------------------------------------------
consensus_13368#1      ------------------------------------------------------------
                                                                                   

consensus_13368#0      GCGCCGTCTCCCCGCGGGCCCGCCTGTCCGCCTCCTACGCCGCCTTCCCCATCGGTGGGA 180
consensus_13368#2      ------------------------------------------------------------
consensus_13368#1      ------------------------------------------------------------
                                                                                   

consensus_13368#0      TCGGGGCATGGGCGGCGGCGACGCCGGCGTCGTCGGGGAGGTGGAGGAGGAGGGGACTGG 240
consensus_13368#2      ------------------------------------------------------------
consensus_13368#1      ------------------------------------------------------------
                                                                                   

consensus_13368#0      AGGTGGTGTGCGAGGCGGCCAAGACCGGCACCGCGACCGGGAGGCGCCCGGACTCGGTCA 300
consensus_13368#2      ------------------------------------------------------------
consensus_13368#1      ------------------------------------------TTTGCTCTTATTCGTCGG 18
                                                                                   

consensus_13368#0      AGAAGAGGGAGCGGCAGAACGACCGGCACCGCATCCGCAACCATGCACGCAAGGCCGAGA 360
consensus_13368#2      ------------------------------------------------------------
consensus_13368#1      TGATGCGAAATGCCTTGTTCAGGTGGGATCGGGGCATGGGCGGCGGCGACGCCGGCGTCG 78
                                                                                   

consensus_13368#0      T-GCGCACCAGGATGAAGAAGGTTTTGAAAGCCCTTGAAAAGCTGAGAAAGAAAGCTGAT 419
consensus_13368#2      ------------------------------------------------------------
consensus_13368#1      TCGGGGAGGTGGAGGAGGAGGGGACTGGAGGTGGTGTGCGAGGCGGCCAAGACCGGCACC 138
                                                                                   

consensus_13368#0      GCCACACCTGAAGATATCATTCAAATAGAGAAATGGATTTCTGAGGCATACAAAGCCATT 479
consensus_13368#2      ---ACTTTTGGACCCACAGTATCCCACGTGAAAAGGGTTTGGGCCGCC-------CCACT 50
consensus_13368#1      GCGACCGGGAGGCGCCCGGACTCGGTCAAGAAGAGGGAGCGGCAGAACGA-----CCGGC 193
                          **                        ***  **                   **   

consensus_13368#0      GACAAGACAGTGAAGGTTGGCGCCATGCACAGGAATACTGGTAACCATCGCAAGTCCCTT 539
consensus_13368#2      GTCACCACGTGTAATACGCTCGGTATACCCATCTGCGCCAAGTCCCTCTTCTTGNCGCG- 109
consensus_13368#1      ACCGCATCCGCAACCATGCACGCAAGGCCGAGATGCGCACCAGGATGAAGAAGGTAGTA- 252
                         *    *    *       **  *  *  *      *               *      

consensus_13368#0      CTTGCGAGGAGGAAGAAGGCCATCGAGA--TACTCC-GTGGTTGGTATG--TTCCAAACG 594
consensus_13368#2      CAGGGTAGGAACGAGAGGCCACTCGAGGAGTACTCCCGTGGTTGGTATTGTTCCCAACCG 169
consensus_13368#1      CATAAAATGTGGTGCTGCCCTTTCTCGCATTG--CCTATGATCCAGAGC-TTTCCAATGG 309
                       *     * *          *  **  *   *   **  ** *    *    * ****  *

consensus_13368#0      CTGAACCTGCTG-CTACCAG--CTAGTCTATTGAC-AA--ATCGT-CTTCA-GGAATTCG 646
consensus_13368#2      CTGAACCTGCTGGCTACCACGTCTAGTCTATTGAC-CACAATCGT-CTTCACGGAATTTG 227
consensus_13368#1      TTCCATCCCACTGTAAAAAAAAATGATATAGGAGTACTTAGTTGCACATTGCACGATACA 369
                        *  * *        *  *    *  * **           * *  * *      **   

consensus_13368#0      CAG--CAGA-TTCA-TTGTCAA-CACGTCTTGCCAATTTTGGACA-TGCATATGTTGTTT 700
consensus_13368#2      CACGCCAGAGTTCACTTGTCAAACACGTCTTGCCCATTTTGGACACTGCATATGTTGTTT 287
consensus_13368#1      CTGTGCAGAGAGAA--TGGGAAATTAGGCGTAATTAGCTGCGTCAGTGCGTCAATCAGCT 427
                       *    ****    *  **  **    * * *    *  *  * ** *** *   *    *

consensus_13368#0      AAGGAATTAAATAGCTTTGTTATATTCTCTCCATTCCA-AGCGATGTGTATACCT-TTGG 758
consensus_13368#2      AAGGAATTAAATAGCTTTGTTATATTCTCTCCATTCCACAGCGATGTGTATACCTCTTGG 347
consensus_13368#1      CATGAGCAGAGTTTCTTGTTAGTACGCCTTCT------TGGAAATGTAGATGGAT-TTAT 480
                        * **    * *  ***  *  **  *  **         *  ****  **   * **  

consensus_13368#0      TCCATGTTATGTGTTCATGTTCTTGCTCTGGAAGCC-TTGAAACAGAACTGGGCCAATAC 817
consensus_13368#2      TCCCTGTTATGTGTTCATGTTCTTGCTCTGGAAGCCCTTGAAACAGAACTGGGCCAATAC 407
consensus_13368#1      GTAATGTCCACTGTCCACTGTCAAGCTCCAAAAATGGAGTGAATGTGATT---TTAAAAG 537
                           ***    *** **   **  ****   **        **    * *     ** * 

consensus_13368#0      TTTTCTCCCACTTCTGTTATCCT-TCACATCAGTGTTGTAAA-ATGACAA-GCTGAAATA 874
consensus_13368#2      TTTTCTCCCACTTCTGTTATCCT-TCACATCAGTGTTGTAAA-ATGACAA-GCTGAAATA 464
consensus_13368#1      GTGCTGCTTATTTGAATTATAGTATCAAACTAGTAATGTACCCATGCTAACGCTACGGCG 597
                        *    *  * **   ****  * *** *  ***  ****   ***  ** ***      

consensus_13368#0      TTTTTTTTCTATGGTAAGGATGTTTTCAAAGTAAAAAAAAAAA 917
consensus_13368#2      TTTTTTTTCTATGGTAAAGATGTCTTCAAAAAAAAAA------ 501
consensus_13368#1      ATACTATGTGATAATGTAAAT-CATACAACCAAAAG------- 632
                        *  * *   **  *    **   * ***   ***        




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)