cluster # 13370

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Oryza sativa
cluster # 13370 cluster # 13370 Sequences # 13 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_13370#0 length = 1661 sequences # 10

consensus_13370#1 length = 626 sequences # 1
consensus_13370#2 length = 392 sequences # 2

consensusID : consensus_13370#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 1661
fasta sequence

                              [GTGTTGTCTGTGCGTGAGCTCCCACCTCCTTCCCTTCCCCCTCCCCACCAAACCCCTCTCCGATCCAAGCCTTCCTTCCCCCCTCTCTCTCTCTCTCCCTCGCATGCCGGCGCGCTCGCCGAGGCGGCGGCGCTGCTGACCATGGGCGGCGTCACGTCCACCATCGCCGCGCGCTTCGCCTTCTTCCCGCCCACGCCGCCGTCCTACACCGTCGTCGCCGACGCCGCCACGGGCCGCCTCGCCATCCCCGAGATCTCCCGCCCGCCCGCGCGCCGCCGGCGGAGGGACGGCGGCGGGGACGCCTCGGCGTCGGGCGCCGCACCCGCCGAGGACGAGGACGGCACGGAGGTGGTGCGCCTCCGCACGCGGCGCGGGAACGAGATCGTCGGGGTGCACGTGCGCCACGAGCGGGCCTCCGCCACGCTGCTCTACTCCCACGGCAACGCCGCGGACCTCGGCCAGATGTACGGCCTCTTCGTCGAGCTCAGCCGCCGCCTCCGCATCAATCTCTTTGGGTATGATTATTCTGGATATGGGCGGTCTACAGGGAAGCCCACTGAGTGTAATACATATGCAGACATTGAAGCAGCATATAACTGCCTCAAGGAAAAATATGGTGTCGCAGATGAGGATATAATCTTGTATGGTCAGTCTGTTGGGAGTGGTCCAACCATTGATCTTGCTTCTCGTTTGCCAAATTTGCGAGGTGTGGTTTTGCACAGTCCCATTTTATCTGGACTAAGAGTACTATATCCTGTCAAAAGGACGTATTGGTTTGACATTTATAAGAATATTGACAAAATTGGCCTGGTAAATTGCCCAGTGCTCGTAATTCATGGTACATCAGATGATGTCGTTGACTGTTCCCATGGAAAGCAGCTGTGGGAACTTTGCAAAGTAAAA-TATTCACCGTTGTGGCTAACT-GGTGGTGGCCACTGCAATCTTGAGCTTTATCCTGATTATATCAAGCACTTGAAGAAGTTTGTGTCAAGTCTTGGCAAAAAATCATCAAAACCTGATCTTAAAGAGATAACGATGAAGGAGGGTGCTTCTAGTAAAGATTCAGAACCTGCAAGCTCTGAGAAACCCCAAGAAGCTCCAAAGTGCTCCCAGATCTCACGAAAGAGCTTAGATAGTCGAGTTGGGAAATCAAAAACTGTGGATGTTCCTGAAAAGCCACGAATGAGCTCAGATGATGTCGACAAGTTCAGGAGGAGAAGATGTTTGGTCTGGTGATATATGATGTGATCCTCTGCGCGGTTCATGTAGCAGTAGCTGAATACAATAGCATGAAAATCGAGCAACTGTATTACATCGTAT-AGCGAGGAACATACCAGCAGTTC-AAGCAGTTCTTATGCCTTACGGGACCGGAATATGAGCTGTTAAATAAGGGAGAAGGATCAGTATGCTGCTGGAGTAAATTATCATATATCCATCAATGAACTGAATCTCAACAATGGTAACATCATGGGTAAATTAACACGTACGCCATCATCCTGTTTTGCAACGCCAGTAGGATTTCCATCATGTAAAAGTGTACCATTATTGTCTGTAATCATGAGGGACAAAAAACTGAAAATTTGCTGCCGCTTTGTGCACAGTCTAAAGCCTTGACACAAGGAGCAAGATATTCCAGTTGGTGTTCAAAAAAAAAAAAAAAA]

[+] EMBL AK120572             [GTGTTGTCTGTGCGTGAGCTCCCACCTCCTTCCCTTCCCCCTCCCCACCAAACCCCTCTCCGATCCAAGCCTTCCTTCCCCCCTCTCTCTCTCTCTCCCTCGCATGCCGGCGCGCTCGCCGAGGCGGCGGCGCTGCTGACCATGGGCGGCGTCACGTCCACCATCGCCGCGCGCTTCGCCTTCTTCCCGCCCACGCCGCCGTCCTACACCGTCGTCGCCGACGCCGCCACGGGCCGCCTCGCCATCCCCGAGATCTCCCGCCCGCCCGCGCGCCGCCGGCGGAGGGACGGCGGCGGGGACGCCTCGGCGTCGGGCGCCGCACCCGCCGAGGACGAGGACGGCACGGAGGTGGTGCGCCTCCGCACGCGGCGCGGGAACGAGATCGTCGGGGTGCACGTGCGCCACGAGCGGGCCTCCGCCACGCTGCTCTACTCCCACGGCAACGCCGCGGACCTCGGCCAGATGTACGGCCTCTTCGTCGAGCTCAGCCGCCGCCTCCGCATCAATCTCTTTGGGTATGATTATTCTGGATATGGGCGGTCTACAGGGAAGCCCACTGAGTGTAATACATATGCAGACATTGAAGCAGCATATAACTGCCTCAAGGAAAAATATGGTGTCGCAGATGAGGATATAATCTTGTATGGTCAGTCTGTTGGGAGTGGTCCAACCATTGATCTTGCTTCTCGTTTGCCAAATTTGCGAGGTGTGGTTTTGCACAGTCCCATTTTATCTGGACTAAGAGTACTATATCCTGTCAAAAGGACGTATTGGTTTGACATTTATAAGAATATTGACAAAATTGGCCTGGTAAATTGCCCAGTGCTCGTAATTCATGGTACATCAGATGATGTCGTTGACTGTTCCCATGGAAAGCAGCTGTGGGAACTTTGCAAAGTAAAA TATTCACCGTTGTGGCTAACT GGTGGTGGCCACTGCAATCTTGAGCTTTATCCTGATTATATCAAGCACTTGAAGAAGTTTGTGTCAAGTCTTGGCAAAAAATCATCAAAACCTGATCTTAAAGAGATAACGATGAAGGAGGGTGCTTCTAGTAAAGATTCAGAACCTGCAAGCTCTGAGAAACCCCAAGAAGCTCCAAAGTGCTCCCAGATCTCACGAAAGAGCTTAGATAGTCGAGTTGGGAAATCAAAAACTGTGGATGTTCCTGAAAAGCCACGAATGAGCTCAGATGATGTCGACAAGTTCAGGAGGAGAAGATGTTTGGTCTGGTGATATATGATGTGATCCTCTGCGCGGTTCATGTAGCAGTAGCTGAATACAATAGCATGAAAATCGAGCAACTGTATTACATCGTAT AGCGAGGAACATACCAGCAGTTC AAGCAGTTCTTATGCCTTACGGGACCGGAATATGAGCTGTTAAATAAGGGAGAAGGATCAGTATGCTGCTGGAGTAAATTATCATATATCCATCAATGAACTGAATCTCAACAATGGTAACATCATGGGTAAATTAACACGTACGCCATCATCCTGTTTTGCAACGCCAGTAGGATTTCCATCATGTAAAAGTGTACCATTATTGTCTGTAATCATGAGGGACAAAAAACTGAAAATTTGCTGCCGCTTTGTGCACAGTCTAAAGCCTTGACACAAGGAGC                                     ]
[+] EMBL CB643597             [                                                                                                                          GGCGGCGGCGCTGCTGACCATGGGCGGCGTCACGTCCACCATCGCCGCGCGCTTCGCCTTCTTCCCGCCCACGCCGCCGTCCTACACCGTCGTCGCCGACGCCGCCACGGGCCGCCTCGCCATCCCCGAGATCTCCCGCCCGCCCGCGCGCCGCCGGCGGAGGGACGGCGGCGGGGACGCCTCGGCGTCGGGCGCCGCACCCGCCGAGGACGAGGACGGCACGGAGGTGGTGCGCCTCCGCACGCGGCGCGGGAACGAGATCGTCGGGGTGCACGTGCGCCACGAGCGGGCCTCCGCCACGCTGCTCTACTCCCACGGCAACGCCGCGGACCTCGGCCAGATGTACGGCCTCTTCGTCGAGCTCAGCCGCCGCCTCCGCATCAATCTCTTTGGGTATGATTATTCTGGATATGGGCGGTCTACAGGGAAGCCCACTGAGTGTAATACATATGCAGACATTGAAGCAGCATATAACTGCCTCAAGGAAAAATATGGTGTCGCAGATGAGGATATAATCTTGTATGGTCAGTCTGTTGGGAGTGGTCCAACCATTGATCTTGCTTCTCGTTTGCCAAATTTGCGAGGTGTGGTTTTGCACAGTCCCATTTTATCTGGACTAAGAGTACTATATCCTGTCAAAAGGACGTATTGGTTTGACATTTATAAGAATATTGACAAAATTGGCCTGGTAAATTGCCCAGTGCTCGTAATTCATGGTACATCAGATGAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CB655531             [                                                                                                                                       CTGACCCTGGGCGGCGTCACGTCCACCATCGCCGCGCGCTTCGCCTTCTTCCCGCCCACGCCGCCGTCCTACACCGTCGTCGCCGACGCCGCCACGGGCCGCCTCGCCATCCCCGAGATCTCCCGCCCGCCCGCGCGCCGCCGGCGGAGGGACGGCGGCGGGGACGCCTCGGCGTCGGGCGCCGCACCCGCCGAGGACGAGGACGGCACGGAGGTGGTGCGCCTCCGCACGCGGCGCGGGAACGAGATCGTCGGGGTGCACGTGCGCCACGAGCGGGCCTCCGCCACGCTGCTCTACTCCCACGGCAACGCCGCGGACCTCGGCCAGATGTACGGCCTCTTCGTCGAGCTCAGCCGCCGCCTCCGCATCAATCTCTTTGGGTATGATTATTCTGGATATGGGCGGTCTACAGGGAAGCCCACTGAGTGTAATACATATGCAGACATTGAAGCAGCATATAACTGCCTCAAGGAAAAATATGGTGTCGCAGATGAGGATATAATCTTGTATGGTCAGTCTGTTGGGAGTGGTCCAACCATTGATCTTGCTTCTCGTTTGCCAAATTTGCGAGGTGTGGTTTTGCACAGTCCCATTTTATCTGGACTAAGAGTACTATATCCTGTCAAAAGGACGTATTGGTTTGACATTTATAAGAATATTGACAAAATTGGCCTGGTAAATTGCCCAGTGCTCGTAATTCATGGTACATCAGATGATGTCGTTGACTGTTCCCATGGAAAGCAGCTGTGGGAACTTTGCAAAGTAAAA TA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CB622833             [                                                                                                                                                                                                            TACACCGTCCTCGCCGACGCCGCCACGGGCCGCCTCGCCATCCCCGAGATCTCCCGCCCGCCCGCGCGCCGCCGGCGGAGGGACGGCGGCGGGGACGCCTCGGCGTCGGGCGCCGCACCCGCCGAGGACGAGGACGGCACGGAGGTGGTGCGCCTCCGCACGCGGCGCGGGAACGAGATCGTCGGGGTGCACGTGCGCCACGAGCGGGCCTCCGCCACGCTGCTCTACTCCCACGGCAACGCCGCGGACCTCGGCCAGATGTACGGCCTCTTCGTCGAGCTCAGCCGCCGCCTCCGCATCAATCTCTTTGGGTATGATTATTCTGGATATGGGCGGGCTACAGGGAAGCCCACTGAGTGTAATACATATGCAGACATTGAAGCAGCATATAACTGCCTCAAGGAAAAATATGGTGTCGCAGATGAGGATATAATCTTGTATGGTCAGTCTGTTGGGAGTGGTCCAACCATTGATCTTGCTTCTCGTTTGCCAAATTTGCGAGGTGTGGTTTTGCACAGTCCCATTTTATCTGGACTAAGAGTACTATATCCTGTCAAAAGGACGTATTGGTTTGACATTTATAAGAATATTGACAAAATTGGCCTGGTAAATTGCCCAGTGCTCGTAATTCATGGTACATCAGATGATGTCGTTGACTGTTCCCATGGAAAGCAGCTGTGGGAACTTTGCAAAGTAAAA TATTCACCGTTGTGGCTAACT GGTGGTGGCCACTGCAATCTTGAGCTTTATCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CF323345             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TCAGCCGCCGCCTCCGCATCAATCTCTTTGGGTATGATTATTCTGGATATGGGCGGTCTACAGGGAAGCCCACTGAGTGTAATACATATGCAGACATTGAAGCAGCATATAACTGCCTCAAGGAAAAATATGGTGTCGCAGATGAGGATATAATCTTGTATGGTCAGTCTGTTGGGAGTGGTCCAACCATTGATCTTGCTTCTCGTTTGCCAAATTTGCGAGGTGTGGTTTTGCACAGTCCCATTTTATCTGGACTAAGAGTACTATATCCTGTCAAAAGGACGTATTGGTTTGACATTTATAAGAATATTGACAAAATTGGCCTGGTAAATTGCCCAGTGCTCGTAATTCATGGTACATCAGATGATGTCGTTGACTGTTCCCATGGAAAGCAGCTGTGGGAACTTTGCAAAGTAAAANTATTCACCGTTGTGGCTAACTGGGTGGTGGCCACTGCAATCTTGAGCTTTATCCTGATTATATCAAGCACTTGAAGAAGTTTGTGTCAAGTCTTGGCAAAAAATCATCAAAACCTGATCTTAAAGAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL CB622834             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     AGTGCTCGTAATTCATGGTACATCAGATGATGTCGTGNACTGTTCCCATGGAAAGCAGCTGTGGGAACTTTGCAAAGTAAAA TATTCACCGTTGTGGCTAACT GGTGGTGGCCACTGCAATCTTGAGCTTTATCCTGATTATATCAAGCACTTGAAGAAGTTTGTGTCAAGTCTTGGCAAAAAATCATCAAAACCTGATCTTAAAGAGATAACGATGAAGGAGGGTGCTTCTAGTAAAGATTCAGAACCTGCAAGCTCTGAGAAACCCCAAGAAGCTCCAAAGTGCTCCCAGATCTCACGAAAGAGCTTAGATAGTCGAGTTGGGAAATCAAAAACTGTGGATGTTCCTGAAAAGCCACGAATGAGCTCAGATGATGTCGACAAGTTCAGGAGGAGAAGATGTTTGGTCTGGTGATATATGATGTGATCCTCTGCGCGGTTCATGTAGCAGTAGCTGAATACAATAGCATGAAAATCGAGCAACTGTATTACATCGTAT AGCGAGGAACATACCAGCAGTTC AAGCAGTTCTTATGCCTTACGGGACCGGAATATGAGCTGTTAAATAAGGGAGAAGGATCAGTATGCTGCTGGAGTAAATTATCATATATCCATCAATGAACTGAATCTCAACAATGGTAACATCATGGGTAAATTAACACGTACGCCATCATCCTGTTTTGCAACGCCAGTAGGATTTCCATCATGTAAAAGTGTACCATTATTGTCTGTAATCATGAGGGACAAAAAACTGAAAATTTGCTGCCGCTTTGTGCACAGTCTAAAGCCTTGACACAAGGAGCAAGA                                 ]
[-] EMBL CB655532             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GTCGTTGACTGTTCCCATGGAAAGCAGCTGTGGGAACTTTGCAAAGTAAAA TATTCACCGTTGTGGCTAACT GGTGGTGGCCACTGCAATCTTGAGCTTTATCCTGATTATATCAAGCACTTGAAGAAGTTTGTGTCAAGTCTTGGCAAAAAATCATCAAAACCTGATCTTAAAGAGATAACGATGAAGGAGGGTGCTTCTAGTAAAGATTCAGAACCTGCAAGCTCTGAGAAACCCCAAGAAGCTCCAAAGTGCTCCCAGATCTCACGAAAGAGCTTAGATAGTCGAGTTGGGAAATCAAAAACTGTGGATGTTCCTGAAAAGCCACGAATGAGCTCAGATGATGTCGACAAGTTCAGGAGGAGAAGATGTTTGGTCTGGTGATATATGATGTGATCCTCTGCGCGGTTCATGTAGCAGTAGCTGAATACAATAGCATGAAAATCGAGCAACTGTATTACATCGTAT AGCGAGGAACATACCAGCAGTTC AAGCAGTTCTTATGCCTTACGGGACCGGAATATGAGCTGTTAAATAAGGGAGAAGGATCAGTATGCTGCTGGAGTAAATTATCATATATCCATCAATGAACTGAATCTCAACAATGGTAACATCATGGGTAAATTAACACGTACGCCATCATCCTGTTTTGCAACGCCAGTAGGATTTCCATCATGTAAAAGTGTACCATTATTGTCTGTAATCATGAGGGACAAAAAACTGAAAATTTGCTGCCGCTTTGTGCACAGTCTAAAGCCTTGACACAAG                                         ]
[-] EMBL CB643598             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             AGCTGTGGGAACTTTGCAAAGTAAAA TATTCACCGTTGTGGCTAACT GGTGGTGGCCACTGCAATCTTGAGCTTTATCCTGATTATATCAAGCACTTGAAGAAGTTTGTGTCAAGTCTTGGCAAAAAATCATCAAAACCTGATCTTAAAGAGATAACGATGAAGGAGGGTGCTTCTAGTAAAGATTCAGAACCTGCAAGCTCTGAGAAACCCCAAGAAGCTCCAAAGTGCTCCCAGATCTCACGAAAGAGCTTAGATAGTCGAGTTGGGAAATCAAAAACTGTGGATGTTCCTGAAAAGCCACGAATGAGCTCAGATGATGTCGACAAGTTCAGGAGGAGAAGATGTTTGGTCTGGTGATATATGATGTGATCCTCTGCGCGGTTCATGTAGCAGTAGCTGAATACAATAGCATGAAAATCGAGCAACTGTATTACATCGTAT AGCGAGGAACATACCAGCAGTTC AAGCAGTTCTTATGCCTTACGGGACCGGAATATGAGCTGTTAAATAAGGGAGAAGGATCAGTATGCTGCTGGAGTAAATTATCATATATCCATCAATGAACTGAATCTCAACAATGGTAACATCATGGGTAAATTAACACGTACGCCATCATCCTGTTTTGCAACGCCAGTAGGATTTCCATCATGTAAAAGTGTACCATTATTGTCTGTAATCATGAGGGACAAAAAACTGAAAATTTGCTGCCGCTTTGTGCACAGTCTAAAGCCTTGACACAAGGAGCAAGATATTCCAGTTGGTGTTCAAAAAAAAAAAAAAAA]
[+] EMBL AU066032             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    AGGGTGCTTCTAGTAAAGATTCAGAACCTGCAAGCTCTGAGAAACCCCAAGAAGCTCCAAAGTGCTCCCAGATCTCACGAAAGAGCTTAGATAGTCGAGTTGGGAAATCAAAAACTGTGGATGTTCCTGAAAAGCCACGAATGAGCTCAGATGATGTCGACAAGTTCAGGAGGAGAAGATGTTTGGTCTGGTGATATATGATGTGATCCTCTGCGCGGTTCATGTAGCAGTAGCTGAATACAATAGCATGAAAATCGAGCAACTGTATTACATCGTAT AGCGAGGAACATACCAGCAGTTC AAGCAGTTCTTATGCCTTACGGGACCGGAATATG                                                                                                                                                                                                                                                                                            ]
[+] EMBL AU032946             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     AGCAACTGTATTACANCGTATAAGCGAGGAACATACCANCAGTTCAAAGCAGTTCTTATGCCTTACGGGACCGGAATATGAGCTGTTAAATAAGGGAGAAGGATCAGTATGCTGCTGGAGTAAATTATCATATANCCATCAATGAACTGAATCTCAACAATGGTAACATCATGGGTAAATTAANACGTACGCCATCATCCTGTTTTGCAACGCCAGTAGGATTTCCATCATGTAAAAGTGTACCATTATTGTCTGTAATCATGAGGGACAAAAAACTGNAAATTT CTGCCGCTTTGTGCACAGTCTAAAGCCTTGACACAAGGAGCAAGATATTCCAaaaaaaaa                  ]




>consensus_13370#0
GTGTTGTCTGTGCGTGAGCTCCCACCTCCTTCCCTTCCCCCTCCCCACCAAACCCCTCTC
CGATCCAAGCCTTCCTTCCCCCCTCTCTCTCTCTCTCCCTCGCATGCCGGCGCGCTCGCC
GAGGCGGCGGCGCTGCTGACCATGGGCGGCGTCACGTCCACCATCGCCGCGCGCTTCGCC
TTCTTCCCGCCCACGCCGCCGTCCTACACCGTCGTCGCCGACGCCGCCACGGGCCGCCTC
GCCATCCCCGAGATCTCCCGCCCGCCCGCGCGCCGCCGGCGGAGGGACGGCGGCGGGGAC
GCCTCGGCGTCGGGCGCCGCACCCGCCGAGGACGAGGACGGCACGGAGGTGGTGCGCCTC
CGCACGCGGCGCGGGAACGAGATCGTCGGGGTGCACGTGCGCCACGAGCGGGCCTCCGCC
ACGCTGCTCTACTCCCACGGCAACGCCGCGGACCTCGGCCAGATGTACGGCCTCTTCGTC
GAGCTCAGCCGCCGCCTCCGCATCAATCTCTTTGGGTATGATTATTCTGGATATGGGCGG
TCTACAGGGAAGCCCACTGAGTGTAATACATATGCAGACATTGAAGCAGCATATAACTGC
CTCAAGGAAAAATATGGTGTCGCAGATGAGGATATAATCTTGTATGGTCAGTCTGTTGGG
AGTGGTCCAACCATTGATCTTGCTTCTCGTTTGCCAAATTTGCGAGGTGTGGTTTTGCAC
AGTCCCATTTTATCTGGACTAAGAGTACTATATCCTGTCAAAAGGACGTATTGGTTTGAC
ATTTATAAGAATATTGACAAAATTGGCCTGGTAAATTGCCCAGTGCTCGTAATTCATGGT
ACATCAGATGATGTCGTTGACTGTTCCCATGGAAAGCAGCTGTGGGAACTTTGCAAAGTA
AAATATTCACCGTTGTGGCTAACTGGTGGTGGCCACTGCAATCTTGAGCTTTATCCTGAT
TATATCAAGCACTTGAAGAAGTTTGTGTCAAGTCTTGGCAAAAAATCATCAAAACCTGAT
CTTAAAGAGATAACGATGAAGGAGGGTGCTTCTAGTAAAGATTCAGAACCTGCAAGCTCT
GAGAAACCCCAAGAAGCTCCAAAGTGCTCCCAGATCTCACGAAAGAGCTTAGATAGTCGA
GTTGGGAAATCAAAAACTGTGGATGTTCCTGAAAAGCCACGAATGAGCTCAGATGATGTC
GACAAGTTCAGGAGGAGAAGATGTTTGGTCTGGTGATATATGATGTGATCCTCTGCGCGG
TTCATGTAGCAGTAGCTGAATACAATAGCATGAAAATCGAGCAACTGTATTACATCGTAT
AGCGAGGAACATACCAGCAGTTCAAGCAGTTCTTATGCCTTACGGGACCGGAATATGAGC
TGTTAAATAAGGGAGAAGGATCAGTATGCTGCTGGAGTAAATTATCATATATCCATCAAT
GAACTGAATCTCAACAATGGTAACATCATGGGTAAATTAACACGTACGCCATCATCCTGT
TTTGCAACGCCAGTAGGATTTCCATCATGTAAAAGTGTACCATTATTGTCTGTAATCATG
AGGGACAAAAAACTGAAAATTTGCTGCCGCTTTGTGCACAGTCTAAAGCCTTGACACAAG
GAGCAAGATATTCCAGTTGGTGTTCAAAAAAAAAAAAAAAA

consensusID : consensus_13370#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 626
fasta sequence

                              [AGGGGGATCTTAAAGAGATAACGATGAAGGAGGGTGCTTCTAGTAAAGATTCAGAACCTGCAAGCTCTGAGAAACCCCAAGAAGCTCCAAAGTGCTCCCAGATCTCACGAAAGAGCTTAGATAGTCGAGTTGGGAAATCAAAAACTGTGGATGTTCCTGAAAAGCCACGAATGAGCTCAGATGATGTCGACAAGTTCAGGAGGAGAAGATGTTTGGTCTGGTGATATATGATGTGATCCTCTGCGCGGTTCATGTAGCAGTAGCTGAATCCAATAGCATGAAAATCGAGCAACTGTATTACATCGTATAGCGAGGAACATACCAGCAGTTCAAGCAGTTTTTATGCCTTACGGGACCGGAATATGAGCTGTTAAATAAGGGAGAAGGATCAGTATGCTGCTGGAGTAAATTATCATATATCCATCAATGAACTGAATCTCAACAATGGTAACATCATGGGTAAATTAACACGTACGCCATCATCCTGTTTTGCAACGCCAGTAGGATTTCCATCATGTAAAAGCGTACCATTATTGTCTGTAATCATGAGGGACAAAAAACTGAAAATTTGCTGCCGCTCTGTGCACAGTTTAAAGCCTTGCCCCAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CA760087             [AGGGGGATCTTAAAGAGATAACGATGAAGGAGGGTGCTTCTAGTAAAGATTCAGAACCTGCAAGCTCTGAGAAACCCCAAGAAGCTCCAAAGTGCTCCCAGATCTCACGAAAGAGCTTAGATAGTCGAGTTGGGAAATCAAAAACTGTGGATGTTCCTGAAAAGCCACGAATGAGCTCAGATGATGTCGACAAGTTCAGGAGGAGAAGATGTTTGGTCTGGTGATATATGATGTGATCCTCTGCGCGGTTCATGTAGCAGTAGCTGAATCCAATAGCATGAAAATCGAGCAACTGTATTACATCGTATAGCGAGGAACATACCAGCAGTTCAAGCAGTTTTTATGCCTTACGGGACCGGAATATGAGCTGTTAAATAAGGGAGAAGGATCAGTATGCTGCTGGAGTAAATTATCATATATCCATCAATGAACTGAATCTCAACAATGGTAACATCATGGGTAAATTAACACGTACGCCATCATCCTGTTTTGCAACGCCAGTAGGATTTCCATCATGTAAAAGCGTACCATTATTGTCTGTAATCATGAGGGACAAAAAACTGAAAATTTGCTGCCGCTCTGTGCACAGTTTAAAGCCTTGCCCCAAAAAAAAAAAAAAAAAAAAA]




>consensus_13370#1
AGGGGGATCTTAAAGAGATAACGATGAAGGAGGGTGCTTCTAGTAAAGATTCAGAACCTG
CAAGCTCTGAGAAACCCCAAGAAGCTCCAAAGTGCTCCCAGATCTCACGAAAGAGCTTAG
ATAGTCGAGTTGGGAAATCAAAAACTGTGGATGTTCCTGAAAAGCCACGAATGAGCTCAG
ATGATGTCGACAAGTTCAGGAGGAGAAGATGTTTGGTCTGGTGATATATGATGTGATCCT
CTGCGCGGTTCATGTAGCAGTAGCTGAATCCAATAGCATGAAAATCGAGCAACTGTATTA
CATCGTATAGCGAGGAACATACCAGCAGTTCAAGCAGTTTTTATGCCTTACGGGACCGGA
ATATGAGCTGTTAAATAAGGGAGAAGGATCAGTATGCTGCTGGAGTAAATTATCATATAT
CCATCAATGAACTGAATCTCAACAATGGTAACATCATGGGTAAATTAACACGTACGCCAT
CATCCTGTTTTGCAACGCCAGTAGGATTTCCATCATGTAAAAGCGTACCATTATTGTCTG
TAATCATGAGGGACAAAAAACTGAAAATTTGCTGCCGCTCTGTGCACAGTTTAAAGCCTT
GCCCCAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_13370#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 392
fasta sequence

                              [CCGCCGCAACCCCCGCCGGGTGGATCGATGGGGATTGGCGGAACATACCAGCAGTTCAAGCAGTTTTTATGCCTTACGGGACCGGAATATGAGCTGTTAAATAAGGGAGAAGGATCAGTATGCTGCTGGAGTAAATTATCATATATCCATCAATGAACTGAATCTCAACAATGGTAACATCATGGGTAAATTAACACGTACGCCATCATCCTGTTTTGCAACGCCAGTAGGATTTCCATCATGTAAAAGTGTACCATTATTGTCTGTAATCATGAGGGACAAAAAACTGAAAATTTGCTGCCGCTTTGTGCACAGTTTAAAGCCTTGACACAAGGAGCAAGATATTCCAGTTGGTGTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTC]

[-] EMBL CF304507             [CCGCCGCAACCCCCGCCGGGTGGATCGATGGGGATTGGCGGAACATACCAGCAGTTCAAGCAGTTTTTATGCCTTACGGGACCGGAATATGAGCTGTTAAATAAGGGAGAAGGATCAGTATGCTGCTGGAGTAAATTATCATATATCCATCAATGAACTGAATCTCAACAATGGTAACATCATGGGTAAATTAACACGTACGCCATCATCCTGTTTTGCAACGCCAGTAGGATTTCCATCATGTAAAAGTGTACCATTATTGTCTGTAATCATGAGGGACAAAAAACTGAAAATTTGCTGCCGCTTTGTGCACAGTTTAAAGCCTTGACACAAGGAGCAAGATATTCCAGTTGGTGTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTC]
[-] EMBL CF304637             [                                GATTGGCGGAACATACCAGCAGTTCAAGCAGTTTTTATGCCTTACGGGACCGGAATATGAGCTGTTAAATAAGGGAGAAGGATCAGTATGCTGCTGGAGTAAATTATCATATATCCATCAATGAACTGAATCTCAACAATGGTAACATCATGGGTAAATTAACACGTACGCCATCATCCTGTTTTGCAACGCCAGTAGGATTTCCATCATGTAAAAGTGTACCATTATTGTCTGTAATCATGAGGGACAAAAAACTGAAAATTTGCTGCCGCTTTGTGCACAGTTTAAAGCCTTGACACAAGGAGCAAGATATTCCAGTTGGTGTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTC]




>consensus_13370#2
CCGCCGCAACCCCCGCCGGGTGGATCGATGGGGATTGGCGGAACATACCAGCAGTTCAAG
CAGTTTTTATGCCTTACGGGACCGGAATATGAGCTGTTAAATAAGGGAGAAGGATCAGTA
TGCTGCTGGAGTAAATTATCATATATCCATCAATGAACTGAATCTCAACAATGGTAACAT
CATGGGTAAATTAACACGTACGCCATCATCCTGTTTTGCAACGCCAGTAGGATTTCCATC
ATGTAAAAGTGTACCATTATTGTCTGTAATCATGAGGGACAAAAAACTGAAAATTTGCTG
CCGCTTTGTGCACAGTTTAAAGCCTTGACACAAGGAGCAAGATATTCCAGTTGGTGTTCA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAACTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13370#0      GTGTTGTCTGTGCGTGAGCTCCCACCTCCTTCCCTTCCCCCTCCCCACCAAACCCCTCTC 60
consensus_13370#1      ------------------------------------------------------------
consensus_13370#2      ------------------------------------------------------------
                                                                                   

consensus_13370#0      CGATCCAAGCCTTCCTTCCCCCCTCTCTCTCTCTCTCCCTCGCATGCCGGCGCGCTCGCC 120
consensus_13370#1      ------------------------------------------------------------
consensus_13370#2      ------------------------------------------------------------
                                                                                   

consensus_13370#0      GAGGCGGCGGCGCTGCTGACCATGGGCGGCGTCACGTCCACCATCGCCGCGCGCTTCGCC 180
consensus_13370#1      ------------------------------------------------------------
consensus_13370#2      ------------------------------------------------------------
                                                                                   

consensus_13370#0      TTCTTCCCGCCCACGCCGCCGTCCTACACCGTCGTCGCCGACGCCGCCACGGGCCGCCTC 240
consensus_13370#1      ------------------------------------------------------------
consensus_13370#2      ------------------------------------------------------------
                                                                                   

consensus_13370#0      GCCATCCCCGAGATCTCCCGCCCGCCCGCGCGCCGCCGGCGGAGGGACGGCGGCGGGGAC 300
consensus_13370#1      ------------------------------------------------------------
consensus_13370#2      ------------------------------------------------------------
                                                                                   

consensus_13370#0      GCCTCGGCGTCGGGCGCCGCACCCGCCGAGGACGAGGACGGCACGGAGGTGGTGCGCCTC 360
consensus_13370#1      ------------------------------------------------------------
consensus_13370#2      ------------------------------------------------------------
                                                                                   

consensus_13370#0      CGCACGCGGCGCGGGAACGAGATCGTCGGGGTGCACGTGCGCCACGAGCGGGCCTCCGCC 420
consensus_13370#1      ------------------------------------------------------------
consensus_13370#2      ------------------------------------------------------------
                                                                                   

consensus_13370#0      ACGCTGCTCTACTCCCACGGCAACGCCGCGGACCTCGGCCAGATGTACGGCCTCTTCGTC 480
consensus_13370#1      ------------------------------------------------------------
consensus_13370#2      ------------------------------------------------------------
                                                                                   

consensus_13370#0      GAGCTCAGCCGCCGCCTCCGCATCAATCTCTTTGGGTATGATTATTCTGGATATGGGCGG 540
consensus_13370#1      ------------------------------------------------------------
consensus_13370#2      ------------------------------------------------------------
                                                                                   

consensus_13370#0      TCTACAGGGAAGCCCACTGAGTGTAATACATATGCAGACATTGAAGCAGCATATAACTGC 600
consensus_13370#1      ------------------------------------------------------------
consensus_13370#2      ------------------------------------------------------------
                                                                                   

consensus_13370#0      CTCAAGGAAAAATATGGTGTCGCAGATGAGGATATAATCTTGTATGGTCAGTCTGTTGGG 660
consensus_13370#1      ------------------------------------------------------------
consensus_13370#2      ------------------------------------------------------------
                                                                                   

consensus_13370#0      AGTGGTCCAACCATTGATCTTGCTTCTCGTTTGCCAAATTTGCGAGGTGTGGTTTTGCAC 720
consensus_13370#1      ------------------------------------------------------------
consensus_13370#2      ------------------------------------------------------------
                                                                                   

consensus_13370#0      AGTCCCATTTTATCTGGACTAAGAGTACTATATCCTGTCAAAAGGACGTATTGGTTTGAC 780
consensus_13370#1      ------------------------------------------------------------
consensus_13370#2      ------------------------------------------------------------
                                                                                   

consensus_13370#0      ATTTATAAGAATATTGACAAAATTGGCCTGGTAAATTGCCCAGTGCTCGTAATTCATGGT 840
consensus_13370#1      ------------------------------------------------------------
consensus_13370#2      ------------------------------------------------------------
                                                                                   

consensus_13370#0      ACATCAGATGATGTCGTTGACTGTTCCCATGGAAAGCAGCTGTGGGAACTTTGCAAAGTA 900
consensus_13370#1      ------------------------------------------------------------
consensus_13370#2      ------------------------------------------------------------
                                                                                   

consensus_13370#0      AAATATTCACCGTTGTGGCTAACTGGTGGTGGCCACTGCAATCTTGAGCTTTATCCTGAT 960
consensus_13370#1      ------------------------------------------------------------
consensus_13370#2      ------------------------------------------------------------
                                                                                   

consensus_13370#0      TATATCAAGCACTTGAAGAAGTTTGTGTCAAGTCTTGGCAAAAAATCATCAAAACCTGAT 1020
consensus_13370#1      ----------------------------------------------------AGGGGGAT 8
consensus_13370#2      ------------------------------------------------------------
                                                                                   

consensus_13370#0      CTTAAAGAGATAACGATGAAGGAGGGTGCTTCTAGTAAAGATTCAGAACCTGCAAGCTCT 1080
consensus_13370#1      CTTAAAGAGATAACGATGAAGGAGGGTGCTTCTAGTAAAGATTCAGAACCTGCAAGCTCT 68
consensus_13370#2      ------------------------------------------------------------
                                                                                   

consensus_13370#0      GAGAAACCCCAAGAAGCTCCAAAGTGCTCCCAGATCTCACGAAAGAGCTTAGATAGTCGA 1140
consensus_13370#1      GAGAAACCCCAAGAAGCTCCAAAGTGCTCCCAGATCTCACGAAAGAGCTTAGATAGTCGA 128
consensus_13370#2      ------------------------------------------------------------
                                                                                   

consensus_13370#0      GTTGGGAAATCAAAAACTGTGGATGTTCCTGAAAAGCCACGAATGAGCTCAGATGATGTC 1200
consensus_13370#1      GTTGGGAAATCAAAAACTGTGGATGTTCCTGAAAAGCCACGAATGAGCTCAGATGATGTC 188
consensus_13370#2      ------------------------------------------------------------
                                                                                   

consensus_13370#0      GACAAGTTCAGGAGGAGAAGATGTTTGGTCTGGTGATATATGATGTGATCCTCTGCGCGG 1260
consensus_13370#1      GACAAGTTCAGGAGGAGAAGATGTTTGGTCTGGTGATATATGATGTGATCCTCTGCGCGG 248
consensus_13370#2      ------------------------------------------------------------
                                                                                   

consensus_13370#0      TTCATGTAGCAGTAGCTGAATACAATAGCATGAAAATCGAGCAACTGTATTACATCGTAT 1320
consensus_13370#1      TTCATGTAGCAGTAGCTGAATCCAATAGCATGAAAATCGAGCAACTGTATTACATCGTAT 308
consensus_13370#2      -------------------------CCGCCGCAACCCCCGCCGGGTGGATCGATGGGGAT 35
                                                  **   **   *   *   ** **      * **

consensus_13370#0      AGCGAGGAACATACCAGCAGTTCAAGCAGTTCTTATGCCTTACGGGACCGGAATATGAGC 1380
consensus_13370#1      AGCGAGGAACATACCAGCAGTTCAAGCAGTTTTTATGCCTTACGGGACCGGAATATGAGC 368
consensus_13370#2      TG-GCGGAACATACCAGCAGTTCAAGCAGTTTTTATGCCTTACGGGACCGGAATATGAGC 94
                        * * ************************** ****************************

consensus_13370#0      TGTTAAATAAGGGAGAAGGATCAGTATGCTGCTGGAGTAAATTATCATATATCCATCAAT 1440
consensus_13370#1      TGTTAAATAAGGGAGAAGGATCAGTATGCTGCTGGAGTAAATTATCATATATCCATCAAT 428
consensus_13370#2      TGTTAAATAAGGGAGAAGGATCAGTATGCTGCTGGAGTAAATTATCATATATCCATCAAT 154
                       ************************************************************

consensus_13370#0      GAACTGAATCTCAACAATGGTAACATCATGGGTAAATTAACACGTACGCCATCATCCTGT 1500
consensus_13370#1      GAACTGAATCTCAACAATGGTAACATCATGGGTAAATTAACACGTACGCCATCATCCTGT 488
consensus_13370#2      GAACTGAATCTCAACAATGGTAACATCATGGGTAAATTAACACGTACGCCATCATCCTGT 214
                       ************************************************************

consensus_13370#0      TTTGCAACGCCAGTAGGATTTCCATCATGTAAAAGTGTACCATTATTGTCTGTAATCATG 1560
consensus_13370#1      TTTGCAACGCCAGTAGGATTTCCATCATGTAAAAGCGTACCATTATTGTCTGTAATCATG 548
consensus_13370#2      TTTGCAACGCCAGTAGGATTTCCATCATGTAAAAGTGTACCATTATTGTCTGTAATCATG 274
                       *********************************** ************************

consensus_13370#0      AGGGACAAAAAACTGAAAATTTGCTGCCGCTTTGTGCACAGTCTAAAGCCTTGACACAAG 1620
consensus_13370#1      AGGGACAAAAAACTGAAAATTTGCTGCCGCTCTGTGCACAGTTTAAAGCCTTGCCCCAAA 608
consensus_13370#2      AGGGACAAAAAACTGAAAATTTGCTGCCGCTTTGTGCACAGTTTAAAGCCTTGACACAAG 334
                       ******************************* ********** ********** * *** 

consensus_13370#0      GAGCAAGATATTCCAGTTGGTGTTCAAAAAAAAAAAAAAAA----------------- 1661
consensus_13370#1      AAAAAAAAAAAAAAAAAA---------------------------------------- 626
consensus_13370#2      GAGCAAGATATTCCAGTTGGTGTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTC 392
                        *  ** * *    *