These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13406#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 548 fasta sequence [TGGACTGAAGGAGTAGAAAATGCTCTCCAGTTTCCACCGGCCTACCTAGATCGGGAGAATGGCTGACAGCTCCGCCGCCTCCCCCATTCCGGTGGCCTATTCATCCGGTGATCCTCCGTCTGCGACGCCGGTGCCCGTTCCAGGCAGTGATCTTCCAGCTGCTCCGGCCGCCAAGTCTCAAGAAGCCTCTCCAGCTGTTCCGGTGATCGATCCTAGCAAAGAGGAGCGTATGGGTTCTGGGCATCCACTTCCCGGGGGTAAAGATTAAATACACTGGGCACAGGGACGTGTTAAAACCGTTCTCCTACATCGAATGTCCGGAACTGCCTTACGTGTACTGTGCACCGTGAGATTGTGATGTTGTTTCAGATAATTTCAGACACTATGATCAGGGAATAAATCCCCACTGGC-GTTAGGCTAGTTAC-TGCTAGGGATA-ATGCAGATCAGGCTGTGCAATTGTAGACAATTGTCTTGTATCAATAAAGTGCAGCCAGTTGGTGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF276691 [TGGACTGAAGGAGTAGAAAATGCTCTCCAGTTTCCACCGGCCTACCTAGATCGGGAGAATGGCTGACAGCTCCGCCGCCTCCCCCATTCCGGTGGCCTATTCATCCGGTGATCCTCCGTCTGCGACGCCGGTGCCCGTTCCAGGCAGTGATCTTCCAGCTGCTCCGGCCGCCAAGTCTCAAGAAGCCTCTCCAGCTGTTCCGGTGATCGATCCTAGCAAAGAGGAGCGTATGGGTTCTGGGCATCCACTTCCCGGGGGTAAAGATTAAATACACTGGGCACAGGGACGTGTTAAAACCGTTCTCCTACATCGAATGTCCGGAACTGCCTTACGTGTACTGTGCACCGTGAGATTG GATGTTGTTTCAGATAATTTCAGACACTATGATCAGGGAATAAATCCCCACTGGC GTTAGGCTAGTTAC TGCTAGGGATA ATGCAGATCAGGCTGTGCAATTGTAGACAATTGTCTTGTATCAATAAAGTGCA CCAGTTGGTGCCAAAAAAAAAAAA ] [+] EMBL AK119252 [ AGTTTCCACCGGCCTACCTAGATCGGGAGAATGGCTGACAGCTCCGCCGCCTCCCCCATTCCGGTGGCCTATTCATCCGGTGATCCTCCGTCTGCGACGCCGGTGCCCGTTCCAGGCAGTGATCTTCCAGCTGCTCCGGCCGCCAAGTCTCAAGAAGCCTCTCCAGCTGTTCCGGTGATCGATCCTAGCAAAGAGGAGCGTATGGGTTCTGGGCATCCACTTCCCGGGGGTAAAGATTAAATACACTGGGCACAGGGACGTGTTAAAACCGTTCTCCTACATCGAATGTCCGGAACTGCCTTACGTGTACTGTGCACCGTGAGATTGTGATGTTGTTTCAGATAATTTCAGACACTATGATCAGGGAATAAATCCCCACTGGC GTTAGGCTAGTTAC TGCTAGGGATA ATGCAGATCAGGCTGTGCAATTGTAGACAATTGTCTTGTATCAATAAAGTGCAGCCAGTTGGTGCCAAAgt ] [+] EMBL AK063903 [ AGTTTCCACCGGCCTACCTAGATCGGGAGAATGGCTGACAGCTCCGCCGCCTCCCCCATTCCGGTGGCCTATTCATCCGGTGATCCTCCGTCTGCGACGCCGGTGCCCGTTCCAGGCAGTGATCTTCCAGCTGCTCCGGCCGCCAAGTCTCAAGAAGCCTCTCCAGCTGTTCCGGTGATCGATCCTAGCAAAGAGGAGCGTATGGGTTCTGGGCATCCACTTCCCGGGGGTAAAGATTAAATACACTGGGCACAGGGACGTGTTAAAACCGTTCTCCTACATCGAATGTCCGGAACTGCCTTACGTGTACTGTGCACCGTGAGATTGTGATGTTGTTTCAGATAATTTCAGACACTATGATCAGGGAATAAATCCCCACTGGC GTTAGGCTAGTTAC TGCTAGGGATA ATGCAGATCAGGCTGTGCAATTGTAGACAATTGTCTTGTATCAATAAAGTGCAGCCAGTTGGTGCCAAAgt ] [+] EMBL CF326498 [ CTAGATCGGGAGAATGGCTGACAGCTCCGCCGCCTCCCCCATTCCGGTGGCCTATTCATCCGGTGATCCTCCGTCTGCGACGCCGGTGCCCGTTCCAGGCAGTGATCTTCCAGCTGCTCCGGCCGCCAAGTCTCAAGAAGCCTCTCCAGCTGTTCCGGTGATCGATCCTAGCAAAGAGGAGCGTATGGGTTCTGGGCATCCACTTCCCGGGGGTAAAGATTAAATACACTGGGCACAGGGACGTGTTAAAACCGTTCTCCTACATCGAATGTCCGGAACTGCCTTACGTGTACTGTGCACCGTGAGATTGTGATGTTGTTTCAGATAATTTCAGACACTATGATCAGGGAATAAATCCCCACTGGC GTTAGGCTAGTTAC TGCTAGGGATA ATGCAGATCAGGCTGTGCAATTGTAGACAATTGTCTTGTATCAATAAAGTGCAGCCAGTTGGTGCCAAAAAAAAA ] [+] EMBL CA998144 [ GAGAATGGCTGACAGCTCCGCCGCCTCCCCCATTCCGGTGGCCTATTCATCCGGTGATCCTCCGTCTGCGACGCCGGTGCCCGTTCCAGGCAGTGATCTTCCAGCTGCTCCGGCCGCCAAGTCTCAAGAAGCCTCTCCAGCTGTTCCGGTGATCGATCCTAGCAAAGAGGAGCGTATGGGTTCTGGGCATCCACTTCCCGGGGGTAAAGATTAAATACACTGGGCACAGGGACGTGTTTAAACCGTTCTCCTACATCGAATGTCCGGAACTGCCTTAC ] [-] EMBL CF337579 [ GGTGCCCGTTCCAGGCAGTGATTTTCCAGTTGCTCCGGCCGCCAAGTCTCAAGAAGCCTCTCCAGCTGTTCCGGTGATCGATCCTAGCAAAGAGGAGCGTATGGGTTTTGGGCATCCACTTCCCGGGGGTAAAGATTAAATACACTGGGCACAGGGACGTGTTAAACCCGTTTTCCTACATCGAATGTCCGGAACTGCCTTACGTGTACTGTGCCCCGTGAGATTGTGATGTTGTTTCAGATAATTTCAGACACTATGATCAGGGAATAAATCCCCACTGGC GTTAGGCTAGTTAC TGCTAGGGATA ATGCGGATCAGGCTGTGCAATTGTAGACAATTGTCTTGTATCAATAAAGTGCAGCCAGTTGGTGCCAAAAAAAAAAAAAAAAAAAA ] [-] EMBL CF276692 [ AAGTTTCAAAAAGCCTTTCCAGTTGTTCCGGTGATCGATCCTAGCAAAAAGGAGGGTATGGGTTTTGGGCATCCCCTTCCCGGGGGTAAAAATTAAATACCCTGGGCACAGGGACGTGTTAAAACCGTTTTCCTACATCGAATGTCCGGAACTCCCTTACGTGTACTGTGCCCCGTGAAATTGAAATGTTGTTTCAGATAATTTCAGACCCTATGATCAGGGAATAAATCCCCCCTGGG GTTAGGCTAGTTAC TGTTAGGGATA ATGCAGATCAGGCTGTGCAATTGTAGACAATTGTTTTGTATCAATAAAGTGCAGCCAGTTGGTGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAA] [+] EMBL BE230446 [ CTTCCCGGGGGTAAAGATTAAAGGCACTGGGCACAGGGACGTGTTAAAACCGTTCTCCTACATCGAATGTCCGGAACTGCCTTACGTGCACTGTGCACCGTGAGATTGTGATGTTGTTTCAGATAATTTCACACACTATGATCAGGGAATAAATCCCCACTGCCTGTTAAGCTATTTACGCGCTAtg ] [+] EMBL CF308000 [ GACGTGTTAAAACCGTTCTCCTACATCGAATGTCCGGAACTGCCTTACGTGTACTGTGCACCGTGAGATTGTGATGTTGTTTCAGATAATTTCAGACACTATGATCAGGGAATAAATCCCCACTGGC GTTAGGCTAGTTAC TGCTATTTATATATGCAGATCAGGCTGTGCAATTGTAGACAATTGTCTTGTATCAATAAAGTGCAGCCAGTTGGTGCCNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA ] [+] EMBL AU071059 [ TACATCGAATGTCCGGAACTGCCTTACGTGTACTGTGCACCGTGAGATTGTGATGTTGTTTCAGATAATTTCAGACACTATGATCAGGGAATAAATCCCCACTGGC GTTAGGCTAGTTAC TGCTAGGGATA ATGCAGATCAGGCTGTGCAATTGTAGACAATTGTCTTGTATCAATAAAGTGCAGCCAGTTGGTGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA ] [+] EMBL AT003552 [ AATGTCCGGAACTGCCTTACGTGTACTGTGCACCGTNANATTGTNATGTTGTTTCAGATAATTTCAGNCACTATGATCAGGGAATAAATCCCCACTGGC GTTAGGCTAGTTAC TGCTAGGGATA ATGCAGATCAGGCTGTGCAATTGTANCCNATTGTCTTGTATCAATAAAGTGCAGCCAGTTGGTGCCAAAAAAA ] consensusID : consensus_13406#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 433 fasta sequence [CGAGTTCTACATTTTCYTGCAAATATATGGAGTACATGTGTATTGCTGCTCTTGGTCTATTTTTGTTATTGATTTCTGCTAGTCAGTAGTTCACCACTACATGCTTATGTGATGCAGTTCCGGTGMTCGMTCCTAGCAAAGAGGAGCGTATGGGTTCTGGGCATCCACTTCCCGGGGGTAAAGATTAAATACACTGGGCACAGGSACGTGTTAAAACCGTTCTCCTACATCGWATSTCCGGMACTSCCTTACGTGTACTGTGCACCGTGAGATTGTGATGTTGTTTCAGATAATTTCAGACACTATGMTCAGGGAATAAATCCCCACTGGCGTTAGGCTAGTTACTGCTAGGGATAATGCAGMTCAGGCTGTGCAATTRKAGACAATTGTCTTGTATCAATAGAGYGCAGCCAGTTGGYGCCAAAAAAAAAAA] [+] EMBL BE229582 [CGAGTTCTACATTTTCYTGCAAATATATGGAGTACATGTGTATTGCTGCTCTTGGTCTATTTTTGTTATTGATTTCTGCTAGTCAGTAGTTCACCACTACATGCTTATGTGATGCAGTTCCGGTGMTCGMTCCTAGCAAAGAGGAGCGTATGGGTTCTGGGCATCCACTTCCCGGGGGTAAAGATTAAATACACTGGGCACAGGSACGTGTTAAAACCGTTCTCCTACATCGWATSTCCGGMACTSCCTTACGTGTACTGTGCACCGTGAGATTGTGATGTTGTTTCAGATAATTTCAGACACTATGMTCAGGGAATAAATCCCCACTGGCGTTAGGCTAGTTACTGCTAGGGATAATGCAGMTCAGGCTGTGCAATTRKAGACAATTGTCTTGTATCAATAGAGYGCAGCCAGTTGGYGCCAAAAAAAAAAA] consensusID : consensus_13406#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 282 fasta sequence [GAGTAAAAATTGGGCACAGGGAGGTGTTAAACCCGTTTTCTTACATGAAATGTCGGGAACTCCCTTAGGTGTATTGTGCCCCGTAAAATTGTAATGTTGTTTCAAATAATTTCAGCCCTTATGATCAGGGAATAAATCCCCACGGGCGTTAGGTTAGTTACTGTTAGGAATAATGCAGATCAGGTTGTGCAATTGTAGACAATTGTTTTGTATCAATAAAGTGCACCCAGTTGGTGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CF307999 [GAGTAAAAATTGGGCACAGGGAGGTGTTAAACCCGTTTTCTTACATGAAATGTCGGGAACTCCCTTAGGTGTATTGTGCCCCGTAAAATTGTAATGTTGTTTCAAATAATTTCAGCCCTTATGATCAGGGAATAAATCCCCACGGGCGTTAGGTTAGTTACTGTTAGGAATAATGCAGATCAGGTTGTGCAATTGTAGACAATTGTTTTGTATCAATAAAGTGCACCCAGTTGGTGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13406#0 TGGACTGAAGGAGTAGAAAATGCTCTCCAGTTTCCACCGGCCTACCTAGATCGGGAGAAT 60 consensus_13406#2 ------------------------------------------------------------ consensus_13406#1 ------------------------------------------------------------ consensus_13406#0 GGCTGACAGCTCCGCCGCCTCCCCCATTCCGGTGGCCTATTCATCCGGTGATCCTCCGTC 120 consensus_13406#2 ------------------------------------------------------------ consensus_13406#1 ---------------CGAGTTCTACATTTTCYTG---CAAATATATGGAGTACATGTGTA 42 consensus_13406#0 TGCGACGCCGGTGCCCGTTCCAGGCAGTGATCTTCCAGCTGCTCCGGCCGCCAAGTCTCA 180 consensus_13406#2 ------------------------------------------------------------ consensus_13406#1 TTGCTGCTCTTGGTCTATTTTTGTTATTGAT--TTCTGCTAGTCAGTAGTTCACCACTAC 100 consensus_13406#0 AGAAGCCTCTCCAGCTGTTCCGGTGATCGATCCTAGCAAAGAGGAGCGTATGGGTTCTGG 240 consensus_13406#2 ------------------------------------------------------------ consensus_13406#1 ATGCTTATGTGATGCAGTTCCGGTGMTCGMTCCTAGCAAAGAGGAGCGTATGGGTTCTGG 160 consensus_13406#0 GCATCCACTTCCCGGGGGTAAAGATTAAATACACTGGGCACAGGGACGTGTTAAAACCGT 300 consensus_13406#2 ----------------------GAGTAAAAAT--TGGGCACAGGGAGGTGTTAAACCCGT 36 consensus_13406#1 GCATCCACTTCCCGGGGGTAAAGATTAAATACACTGGGCACAGGSACGTGTTAAAACCGT 220 ** **** * ********** * ******** **** consensus_13406#0 TCTCCTACATCGAATGTCCGGAACTGCCTTACGTGTACTGTGCACCGTGAGATTGTGATG 360 consensus_13406#2 TTTCTTACATGAAATGTCGGGAACTCCCTTAGGTGTATTGTGCCCCGTAAAATTGTAATG 96 consensus_13406#1 TCTCCTACATCGWATSTCCGGMACTSCCTTACGTGTACTGTGCACCGTGAGATTGTGATG 280 * ** ***** ** ** ** *** ***** ***** ***** **** * ***** *** consensus_13406#0 TTGTTTCAGATAATTTCAGACACTATGATCAGGGAATAAATCCCCACTGGCGTTAGGCTA 420 consensus_13406#2 TTGTTTCAAATAATTTCAGCCCTTATGATCAGGGAATAAATCCCCACGGGCGTTAGGTTA 156 consensus_13406#1 TTGTTTCAGATAATTTCAGACACTATGMTCAGGGAATAAATCCCCACTGGCGTTAGGCTA 340 ******** ********** * **** ******************* ********* ** consensus_13406#0 GTTACTGCTAGGGATAATGCAGATCAGGCTGTGCAATTGTAGACAATTGTCTTGTATCAA 480 consensus_13406#2 GTTACTGTTAGGAATAATGCAGATCAGGTTGTGCAATTGTAGACAATTGTTTTGTATCAA 216 consensus_13406#1 GTTACTGCTAGGGATAATGCAGMTCAGGCTGTGCAATTRKAGACAATTGTCTTGTATCAA 400 ******* **** ********* ***** ********* ********** ********* consensus_13406#0 TAAAGTGCAGCCAGTTGGTGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 540 consensus_13406#2 TAAAGTGCACCCAGTTGGTGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 276 consensus_13406#1 TAGAGYGCAGCCAGTTGGYGCCAAAAAAAAAAA--------------------------- 433 ** ** *** ******** ************** consensus_13406#0 AAAAAAAA 548 consensus_13406#2 AAAAAA-- 282 consensus_13406#1 -------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||