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Oryza sativa
cluster # 13407 cluster # 13407       Sequences # 13       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13407#0 length = 1613 sequences # 12  
consensus_13407#1 length = 686 sequences # 1  

consensusID : consensus_13407#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 12
consensus length = 1613
fasta sequence
                              [CGCCTCCACTTTCCCTTCCCTTCCTCCTCCACCTCCACCTCCTCGTCGCGATCCAAATCCGAATCCGGCCATGGACGCCGGGGCGCAGCCGCCGGACACGGAGATGGCGGAGGCCGGCGGCGGGCAGCAGCCGCCTGCTGCGGCTGCGGCGGCGGGGGCGGGGGCAGGGGCGGGGATGATGGAGAACATCCAGGCGACGCTGAGCCATGGCGGGAGGTTCATCCAGTACAACATCTTCGGGAACGTGTTCGAGGTCACCGCCAAGTACAAGCCCCCCATCCTCCCCATCGGCAAGGGCGCCTACGGCATCGTCTGCTCGGCGCTCAACTCGGAGACGGGGGAGCAGGTGGCGATCAAGAAGATCGCCAACGCGTTCGACAACAAGATCGACGCCAAGCGCACGCTCAGGGAGATCAAGCTGCTCCGCCATATGGACCACGAGAATATTGTTGCCATAAGGGATATCATACCTCCTCCACAAAGGAATTCATTCAATGACGTTTATATTGCATATGAATTGATGGATACTGATCTGCATCAAATTATTCGCTCAAATCAAGCATTGTCAGAGGAGCACTGCCAGTATTTCCTTTATCAGATTCTCCGTGGCTTGAAGTATATACATTCAGCAAATGTCCTTCACCGAGACTTGAAGCCCAGCAACCTACTTTTGAATGCAAATTGTGATCTCAAAATTTGTGATTTTGGACTTGCTCGTACCACCTCAGAAACCGATTTTATGACTGAGTACGTTGTCACAAGATGGTATAGGGCACCGGAACTTCTG-TTGAATTCCTCTGAATATACTGCAGCAATTGATGTGTGGTCCGTGGGCTGTATTTTTATGGAACTCATGGATCGTAAACCTTTGTTTCCTGGAAGAGATCATGTCCATCAATTACGTCTACTAATGGAGCTCATTGGAACGCCAAATGAAGCTGATCTGGATTTTGTAAATGAAAATGCAAGAAGATACATTCGCCAACTTCCTAGACATGCAAGGCAGTCCTTTCCTGAAAAATTTCCACATGTTCATCCTTTAGCAATTGATCTGGTTGAAAAGATGCTGACATTTGATCCTAGACAGAGAATAACAGTTGAAGGTGCCCTTGCACATCCTTACCTGGCATCAC-TGCATGACATAAGTGATGAGCCAGTCTGCTCATCACCCTTCAGCTTTGACTTCGA-GCAGCATGCATTGTCCGAGGAACAAATGAAGGATCTAATCTACCAAGAAGGCCTTGCGTTCAACCCTGATTACCAGTAGCTGGTGTTCTATTTCAGCCTTGGATTGATTCTATTCATATGGAGTTTTTTCCTCCTGCGCCACAAAAGGTCGCCGACAGTGATCACTAGTTGTAAATAATTGCCTCACCTGAAAAATCCT-CCCT-GGTTCAAAGCTGAAGGTGTTGTTCTAAGAGTAGAAATGTACTTTGTGATCAAGTTCCTGGGTAGCTGCTATGCCATTCTTATGCTTATGTATGTTGTTTAATGTGGGA-TTTTTTTCCATCTTAAATGTTTTTAGTCCCTTTTGTAAGAAGAGTTAGTTCATGAACGATGACGGCCTAAATTCTGCGGTTATCATCAAATTCCCCATTTTCTTGTCAAAAAAA]

[+] EMBL AK111942             [CGCCTCCACTTTCCCTTCCCTTCCTCCTCCACCTCCACCTCCTCGTCGCGATCCAAATCCGAATCCGGCCATGGACGCCGGGGCGCAGCCGCCGGACACGGAGATGGCGGAGGCCGGCGGCGGGCAGCAGCCGCCTGCTGCGGCTGCGGCGGCGGGGGCGGGGGCAGGGGCGGGGATGATGGAGAACATCCAGGCGACGCTGAGCCATGGCGGGAGGTTCATCCAGTACAACATCTTCGGGAACGTGTTCGAGGTCACCGCCAAGTACAAGCCCCCCATCCTCCCCATCGGCAAGGGCGCCTACGGCATCGTCTGCTCGGCGCTCAACTCGGAGACGGGGGAGCAGGTGGCGATCAAGAAGATCGCCAACGCGTTCGACAACAAGATCGACGCCAAGCGCACGCTCAGGGAGATCAAGCTGCTCCGCCACATGGACCACGAGAATATTGTTGCCATAAGGGATATCATACCTCCTCCACAAAGGAATTCATTCAATGACGTTTATATTGCATATGAATTGATGGATACTGATCTGCATCAAATTATTCGCTCAAATCAAGCATTGTCAGAGGAGCACTGCCAGTATTTCCTTTATCAGATTCTCCGTGGCTTGAAGTATATACATTCAGCAAATGTCCTTCACCGAGACTTGAAGCCCAGCAACCTACTTTTGAATGCAAATTGTGACCTCAAAATTTGTGATTTTGGACTTGCTCGTACCACCTCAGAAACCGATTTTATGACTGAGTATGTTGTCACAAGATGGTATAGGGCACCGGAACTTCTG TTGAATTCCCCTGAATATACTGCAGCAATTGATGTGTGGTCTGTGGGCTGTATTTTTATGGAACTCATGGATCGTAAACCTTTGTTTCCTGGAAGAGATCATGTCCATCAATTACGTCTACTAATGGAGCTCATCGGAACGCCAAATGAGGCTGATCTGGATTTTGTAAATGAAAATGCAAGAAGATACATTCGCCAACTTCCTAGACATGCAAGGCAGTCCTTTCCTGAAAAATTTCCACATGTTCATCCTTTAGCAATTGATCTGGTTGAAAAGATGCTGACATTTGATCCTAGACAGAGAATAACAGTTGAAGGTGCCCTTGCACATCCTTACCTGGCATCAC TGCATGACATAAGTGATGAGCCAGTCTGCTCATCACCCTTCAGCTTTGACTTCGA GCAGCATGCATTGTCCGAGGAACAAATGAAGGATCTAATCTACCAAGAAGGCCTTGCGTTCAACCCTGATTACCAGTAGCTGGTGTTCTATTTCAGCCTTGGATTGATTCTATTCATATGGAGTTTTTTCCTCCTGCGCCACAAAAGGTCGCCGACAGTGATCACTAGTTGTAAATAATTGCCTCACCTGAAAAATCCT CCCT GGTTCAAAGCTGAAGGTGTTGTTCTAAGAGTAGAAATGTACTTTGTGATCAAGTTCCTGGGTAGCTGCTATGCCATTCTTATGCTTATGTATGTTGTTTAATGTGGGA TTTTTTTCCATCTTAAATGTTTTTAGTCCCTTTTGTAAGAAGAGTTAGTTCATGAACGATGACGGCCTAAATTCTGCGGTTATCATCAAATTCCCCA                 ]
[+] EMBL AK111691             [  CCTCCACTTTCCCTTCCCTTCCTCCTCCACCTCCACCTCCTCGTCGCGATCCAAATCCGAATCCGGCCATGGACGCCGGGGCGCAGCCGCCGGACACGGAGATGGCGGAGGCCGGCGGCGGGCAGCAGCCGCCTGCTGCGGCTGCGGCGGCGGGGGCGGGGGCAGGGGCGGGGATGATGGAGAACATCCAGGCGACGCTGAGCCATGGCGGGAGGTTCATCCAGTACAACATCTTCGGGAACGTGTTCGAGGTCACCGCCAAGTACAAGCCCCCCATCCTCCCCATCGGCAAGGGCGCCTACGGCATCGTCTGCTCGGCGCTCAACTCGGAGACGGGGGAGCAGGTGGCGATCAAGAAGATCGCCAACGCGTTCGACAACAAGATCGACGCCAAGCGCACGCTCAGGGAGATCAAGCTGCTCCGCCACATGGACCACGAGAATATTGTTGCCATAAGGGATATCATACCTCCTCCACAAAGGAATTCATTCAATGACGTTTATATTGCATATGAATTGATGGATACTGATCTGCATCAAATTATTCGCTCAAATCAAGCATTGTCAGAGGAGCACTGCCAGTATTTCCTTTATCAGATTCTCCGTGGCTTGAAGTATATACATTCAGCAAATGTCCTTCACCGAGACTTGAAGCCCAGCAACCTACTTTTGAATGCAAATTGTGACCTCAAAATTTGTGATTTTGGACTTGCTCGTACCACCTCAGAAACCGATTTTATGACTGAGTATGTTGTCACAAGATGGTATAGGGCACCGGAACTTCTGTTTGAATTCCTCTGAATATACTGCAGCAATTGATGTGTGGTCTGTGGGCTGTATTTTTATGGAACTCATGGATCGTAAACCTTTGTTTCCTGGAAGAGATCATGTCCATCAATTACGTCTACTAATGGAGCTCATCGGAACGCCAAATGAGGCTGATCTGGATTTTGTAAATGAAAATGCAAGAAGATACATTCGCCAACTTCCTAGACATGCAAGGCAGTCCTTTCCTGAAAAATTTCCACATGTTCATCCTTTAGCAATTGATCTGGTTGAAAAGATGCTGACATTTGATCCTAGACAGAGAATAACAGTTGAAGGTGCCCTTGCACATCCTTACCTGGCATCAC TGCATGACATAAGTGATGAGCCAGTCTGCTCATCACCCTTCAGCTTTGACTTCGA GCAGCATGCATTGTCCGAGGAACAAATGAAGGATCTAATCTACCAAGAAGGCCTTGCGTTCAACCCTGATTACCAGTAGCTGGTGTTCTATTTCAGCCTTGGATTGATTCTATTCATATGGAGTTTTTTCCTCCTGCGCCACAAAAGGTCGCCGACAGTGATCACTAGTTGTAAATAATTGCCTCACCTGAAAAATCCT CCCT GGTTCAAAGCTGAAGGTGTTGTTCTAAGAGTAGAAATGTACTTTGTGATCAAGTTCCTGGGTAGCTGCTATGCCATTCTTATGCTTATGTATGTTGTTTAATGTGGGA TTTTTTTCCATCTTAAATGTTTTTAGTCCCTTTTGTAAGAAGAGTTAGTTCATGAACGATGACGGCCTAAATTCTGCGGTTATCATCAAATTCCCCATTTTCTTGTC       ]
[+] EMBL OSA535841            [                                       TCCTCGTCGCGATCCAAATCCGAATCCGGCCATGGACGCCGGGGCGCAGCCGCCGGACACGGAGATGGCGGAGGCCGGCGGCGGGCAGCAGCCGCCTGCTGCGGCTGCGGCGGCGGGGGCGGGGGCAGGGGCGGGGATGATGGAGAACATCCAGGCGACGCTGAGCCATGGCGGGAGGTTCATCCAGTACAACATCTTCGGGAACGTGTTCGAGGTCACCGCCAAGTACAAGCCCCCCATCCTCCCCATCGGCAAGGGCGCCTACGGCATCGTCTGCTCGGCGCTCAACTCGGAGACGGGGGAGCAGGTGGCGATCAAGAAGATCGCCAACGCGTTCGACAACAAGATCGACGCCAAGCGCACGCTCAGGGAGATCAAGCTGCTCCGCCACATGGACCACGAGAATATTGTTGCCATAAGGGATATCATACCTCCTCCACAAAGGAATTCATTCAATGACGTTTATATTGCATATGAATTGATGGATACTGATCTGCATCAAATTATTCGCTCAAATCAAGCATTGTCAGAGGAGCACTGCCAGTATTTCCTTTATCAGATTCTCCGTGGCTTGAAGTATATACATTCAGCAAATGTCCTTCACCGAGACTTGAAGCCCAGCAACCTACTTTTGAATGCAAATTGTGACCTCAAAATTTGTGATTTTGGACTTGCTCGTACCACCTCAGAAACCGATTTTATGACTGAGTATGTTGTCACAAGATGGTATAGGGCACCGGAACTTCTG TTGAATTCCTCTGAATATACTGCAGCAATTGATGTGTGGTCTGTGGGCTGTATTTTTATGGAACTCATGGATCGTAAACCTTTGTTTCCTGGAAGAGATCATGTCCATCAATTACGTCTACTAATGGAGCTCATCGGAACGCCAAATGAGGCTGATCTGGATTTTGTAAATGAAAATGCAAGAAGATACATTCGCCAACTTCCTAGACATGCAAGGCAGTCCTTTCCTGAAAAATTTCCACATGTTCATCCTTTAGCAATTGATCTGGTTGAAAAGATGCTGACATTTGATCCTAGACAGAGAATAACAGTTGAAGGTGCCCTTGCACATCCTTACCTGGCATCAC TGCATGACATAAGTGATGAGCCAGTCTGCTCATCACCCTTCAGCTTTGACTTCGA GCAGCATGCATTGTCCGAGGAACAAATGAAGGATCTAATCTACCAAGAAGGCCTTGCGTTCAACCCTGATTACCAGTAGCTGGTGTTCTATTTCAGCCTTGGATTGATTCTATTCATATGGAGTTTTTTCCTCCTGCGCCACAAAAGGTCGCCGACAGTGATCACTAGTTGTAAATAATTGCCTCACCTGAAAAATCCT CCCT GGTTCAAAGCTGAAGGTGTTGTTCTAAGAGTAGAAATGTACTTTGTGATCAAGTTCCTGGGTAGCTGCTATGCCATTCTTATGCTTATGTATGTTGTTTAATGTGGGA TTTTTTTCCATCTTAAATGTTTTTAGTCCCTTTTGTAAGAAGAGTTAGTTCATGAACGATGACGGCCTAAATTCTGCGGTTATCATCAAATTCCCCATTTTCTTGTC       ]
[+] EMBL CB617797             [                                                                                                                                                                                   TGGAGACCATCCAGGCGACGCTGAGCCATGGCGGGAGGTTCATCCAGTACAACATCTTCGGGAACGTGTTCGAGGTCACCGCCAAGTACAAGCCCCCCATCCTCCCCATCGGCAAGGGCGCCTACGGCATCGTCTGCTCGGCGCTCAACTCGGAGACGGGGGAGCAGGTGGCGATCAAGAAGATCGCCAACGCGTTCGACAACAAGATCGACGCCAAGCGCACGCTCAGGGAGATCAAGCTGCTCCGCCATATGGACCACGAGAATATTGTTGCCATAAGGGATATCATACCTCCTCCACAAAGGAATTCATTCAATGACGTTTATATTGCATATGAATTGATGGATACTGATCTGCATCAAATTATTCGCTCAAATCAAGCATTGTCAGAGGAGCACTGCCAGTATTTCCTTTATCAGATTCTCCGTGGCTTGAAGTATATACATTCAGCAAATGTCCTTCACCGAGACTTGAAGCCCAGCAACCTACTTTTGAATGCAAATTGTGATCTCAAAATTTGTGATTTTGGACTTGCTCGTACCACCTCAGAAACCGATTTTATGACTGAGTACGTTGTCACAAGATGGTATAGGGCACCGGAACTTCTG TTGAATTCCTCTGAATATACTGCAGCAATTGATGTGTGGTCCGTGGGCTGTATTTTTATGGAACTCATGGATCGTAAACCTTTGTTTCCTGGAAGAGATCATGTCCATCAATTACGTCTACTAATGGAGCTCATTGGAACGCCAAATGAAGCTGATCTGGATTTTGTAAATGAAAATGCAAGAAGATACATTCGCCAACTTCCTAGACATGCAAGGCAGTCCTTTCCTGAAAAATTTCCGCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CB617798             [                                                                                                                                                                                   TGGAGAACATCCAGGCGACGCTGAGCCATGGCGGGAGGTTCATCCAGTACAACATCTTCGGGAACGTGTTCGAGGTCACCGCCAAGTACAAGCCCCCCATCCTCCCCATCGGCAAGGGCGCCTACGGCATCGTCTGCTCGGCGCTCAACTCGGAGACGGGGGAGCAGGTGGCGATCAAGAAGATCGCCAACGCGTTCGACAACAAGATCGACGCCAAGCGCACGCTCAGGGAGATCAAGCTGCTCCGCCATATGGACCACGAGAATATTGTTGCCATAAGGGATATCATACCTCCTCCACAAAGGAATTCATTCAATGACGTTTATATTGCATATGAATTGATGGATACTGATCTGCATCAAATTATTCGCTCAAATCAAGCATTGTCAGAGGAGCACTGCCAGTATTTCCTTTATCAGATTCTCCGTGGCTTGAAGTATATACATTCAGCAAATGTCCTTCACCGAGACTTGAAGCCCAGCAACCTACTTTTGAATGCAAATTGTGATCTCAAAATTTGTGATTTTGGACTTGCTCGTACCACCTCAGAAACCGATTTTATGACTGAGTACGTTGTCACAAGATGGTATAGGGCACCGGAACTTCTG TTGAATTCCTCTGAATATACTGCAGCAATTGATGTGTGGTCCGTGGGCTGTATTTTTATGGAACTCATGGATCGTAAACCTTTGTTTCCTGGAAGAGATCATGTCCATCAATTACGTCTACTAATGGAGCTCATTGGAACGCCAAATGAAGCTGATCTGGATTTTGTAAATGAAAATGCAAGAAGATACATTCGCCAACTTCCTAGACATGCAAGGCAGTCCTTTTCTGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CB617835             [                                                                                                                                                                                   TGGAGACCTTCCAGGCGACGCTGAGCCATGGCGGGAGGTTCATCCAGTACAACATCTTCGGGAACGTGTTCGAGGTCACCGCCAAGTACAAGCCCCCCATCCTCCCCATCGGCAAGGGCGCCTACGGCATCGTCTGCTCGGCGCTCAACTCGGAGACGGGGGAGCAGGTGGCGATCAAGAAGATCGCCAACGCGTTCGACAACAAGATCGACGCCAAGCGCACGCTCAGGGAGATCAAGCTGCTCCGCCATATGGACCACGAGAATATTGTTGCCATAAGGGATATCATACCTCCTCCACAAAGGAATTCATTCAATGACGTTTATATTGCATATGAATTGATGGATACTGATCTGCATCAAATTATTCGCTCAAATCAAGCATTGTCAGAGGAGCACTGCCAGTATTTCCTTTATCAGATTCTCCGTGGCTTGAAGTATATACATTCAGCAAATGTCCTTCACCGAGACTTGAAGCCCAGCAACCTACTTTTGAATGCAAATTGTGATCTCAAAATTTGTGATTTTGGACTTGCTCGTACCACCTCAGAAACCGATTTTATGACTGAGTACGTTGTCACAAGATGGTATAGGGCACCGGAACTTCTG TTGAATTCCTCTGAATATACTGCAGCAATTGATGTGTGGTCCGTGGGCTGTATTTTTATGGAACTCATGGATCGTAAACCTTTGTTTCCTGGAAGAGATCATGTCCATCAATTACGTCTACTAATGGAGCTCATTGGAACGCCAAATGAAGCTGATCTGGATTTTGTAAATGAAAATGCAAGAAGATACATTCGCCAACTTCCTAGACATGCAAGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CB617768             [                                                                                                                                                                                   TGGAGAACATCCAGGCGACGCTGAGCCATGGCGGGAGGTTCATCCAGTACAACATCTTCGGGAACGTGTTCGAGGTCACCGCCAAGTACAAGCCCCCCATCCTCCCCATCGGCAAGGGCGCCTACGGCATCGTCTGCTCGGCGCTCAACTCGGAGACGGGGGAGCAGGTGGCGATCAAGAAGATCGCCAACGCGTTCGACAACAAGATCGACGCCAAGCGCACGCTCAGGGAGATCAAGCTGCTCCGCCATATGGACCACGAGAATATTGTTGCCATAAGGGATATCATACCTCCTCCACAAAGGAATTCATTCAATGACGTTTATATTGCATATGAATTGATGGATACTGATCTGCATCAAATTATTCGCTCAAATCAAGCATTGTCAGAGGAGCACTGCCAGTATTTCCTTTATCAGATTCTCCGTGGCTTGAAGTATATACATTCAGCAAATGTCCTTCACCGAGACTTGAAGCCCAGCAACCTACTTTTGAATGCAAATTGTGATCTCAAAATTTGTGATTTTGGACTTGCTCGTACCACCTCAGAAACCGATTTTATGACTGAGTACGTTGTCACAAGATGGTATAGGGCACCGGAACTTCTG TTGAATTCCTCTGAATATACTGCAGCAATTGATGTGTGGTCCGTGGGCTGTATTTTTATGGAACTCATGGATCGTAAACCTTTGTTTCCTGGAAGAGATCATGTCCATCAATTACGTCTACTAATGGAGCTCATTGGAACGCCAAATGAAGCTGATCTGGATTTTGTAAATGAAAATGCAAGAAGATACATTCGCCAACTTCCTAGACAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CB617836             [                                                                                                                                                                                   TGGAGAACATCCAGGCGACGCTGAGCCATGGCGGGAGGTTCATCCAGTACAACATCTTCGGGAACGTGTTCGAGGTCACCGCCAAGTACAAGCCCCCCATCCTCCCCATCGGCAAGGGCGCCTACGGCATCGTCTGCTCGGCGCTCAACTCGGAGACGGGGGAGCAGGTGGCGATCAAGAAGATCGCCAACGCGTTCGACAACAAGATCGACGCCAAGCGCACGCTCAGGGAGATCAAGCTGCTCCGCCATATGGACCACGAGAATATTGTTGCCATAAGGGATATCATACCTCCTCCACAAAGGAATTCATTCAATGACGTTTATATTGCATATGAATTGATGGATACTGATCTGCATCAAATTATTCGCTCAAATCAAGCATTGTCAGAGGAGCACTGCCAGTATTTCCTTTATCAGATTCTCCGTGGCTTGAAGTATATACATTCAGCAAATGTCCTTCACCGAGACTTGAAGCCCAGCAACCTACTTTTGAATGCAAATTGTGATCTCAAAATTTGTGATTTTGGACTTGCTCGTACCACCTCAGAAACCGATTTTATGACTGAGTACGTTGTCACAAGATGGTATAGGGCACCGGAACTTCTG TTGAATTCCTCTGAATATACTGCAGCAATTGATGTGTGGTCCGTGGGCTGTATTTTTATGGAACTCATGGATCGTAAACCTTTGTTTCCTGGAAGAGATCATGTCCATCAATTACGTCTACTAATGGAGCTCATTGGAACGCCAAATGAAGCTGATCTGGATTTTGTAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CB617796             [                                                                                                                                                                                   TGGAGAACATCCAGGCGACGCTGAGCCATGGCGGGAGGTTCATCCAGTACAACATCTTCGGGAACGTGTTCGAGGTCACCGCCAAGTACAAGCCCCCCATCCTCCCCATCGGCAAGGGCGCCTACGGCATCGTCTGCTCGGCGCTCAACTCGGAGACGGGGGAGCAGGTGGCGATCAAGAAGATCGCCAACGCGTTCGACAACAAGATCGACGCCAAGCGCACGCTCAGGGAGATCAAGCTGCTCCGCCATATGGACCACGAGAATATTGTTGCCATAAGGGATATCATACCTCCTCCACAAAGGAATTCATTCAATGACGTTTATATTGCATATGAATTGATGGATACTGATCTGCATCAAATTATTCGCTCAAATCAAGCATTGTCAGAGGAGCACTGCCAGTATTTCCTTTATCAGATTCTCCGTGGCTTGAAGTATATACATTCAGCAAATGTCCTTCACCGAGACTTGAAGCCCAGCAACCTACTTTTGAATGCAAATTGTGATCTCAAAATTTGTGATTTTGGACTTGCTCGTACCACCTCAGAAACCGATTTTATGACTGAGTACGTTGTCACAAGATGGTATAGGGCACCGGAACTTCTG TTGAATTCCTCTGAATATACTGCAGCAATTGATGTGTGGTCCGTGGGCTGTATTTTTATGGAACTCATGGATCGTAAACCTTTGTTTCCTGGAAGAGATCATGTCCATCAATTACGTCTACTAATGGAGCTCATTGGAACGCCAAATGAAGCTGATCTGGATTTTGTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL CB966430             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GTAAATGAAAATGCAAGAAGATACATTCGCCAACTTCCTAGACATGCAAGCCAGTCCTTTCCTGAAAAATTTCCGCATGTTCATCCTTTAGCAATTGATCTGGTTGAAAAGATGCTGACATTTGATCCTAGACAGAGAATAACAGTTGAAGGTGCCCTTGCACATCCTTACCTGGCATCGC TGCATGACATAAGTGATGAGCCAGTCTGCTCATCACCCTTCAGCTTTGACTTCGA GCAGCATGCATTGTCCGAGGAACAAATGAAGGATCTAATCTACCAAGAAGGCCTTGCGTTCAACCCTGATTACCAGTAGCTGGTGTTCTATTTCAGCCTTGGATTGATTCTATTC  ATGGAGTTTTTTCCTCCTGCGCCACAAAAGGTCGCCGACAGTGATCACTAGTTGTAAATAATTGCCTCACCTGAAAAATCCT CCCT GGTTCAAAGCTGAAGGTGTTGTTCTAAGAGTAGAAATGTACTTTGTGATCAAGTTCCTGGGTAGCTGCTATGCCATTCTTATGCTTATGTATGTTGTTTCATGTGGGATTTTTTTTCCATCTTAAATGTTTTTAGTCCCTTTTGTAAGAAGAGTTAGTTCATGAACGATGACGGCCTAAATTCAGCGGTTATCATCAAATTTCCCATTTTCTTGTCgat    ]
[+] EMBL BM421147             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     CTTGCACATCCTTACCTGGCATCAC TGCATGACATAAGTGATGAGCCAGTCTGCTCATCACCCTTCAGCTTTGACTTCGA GCAGCATGCATTGTCCGAGGAACAAATGAAGGATCTAATCTACCAAGAAGGCCTTGCGTTCAACCCTGATTACCAGTAGCTGGTGTTCTATTTCAGCCTTGGATTGATTCTATTCATATGGAGTTTTTTCCTCCTGCGCCACAAAAGGTCGCCGACAGTGATCACTAGTTGTAAATAATTGCCTCACCTGAAAAATCCTCCCCT GGTTCAAAGCTGAAGGTGTTGTTCTAAGAGTAGAAATGTACTTTGTGATCAAGTTCCTGGGTAGCTGCTATGCCATTCTTATGCTTATGTATGTTGTTTAATGTGGGA TTTTTTTCCATCTTAAATGTTTTTAGTCCCTTTTGTAAGAAGAGTTAGTTCATGAACGATGACGGCCTAAATTCTCCGGTTATCATCAAATTCCCCATTTTCTTGTCAAAAAA ]
[+] EMBL BM419547             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GGCATCACGTGCATGACATAAGTGATGACCCAGTCTGCTCATCACCCTTCAGCTTTGACTTCGACNCAGCATGCATTGTCCGAGGAACAAATGAAGGATCTAATCTACCAAGAAGCCCTTGCGTTCAACCCTGATTACCAGTAGCTGGTGTTCTATTTCAGCCTTGGATTGATTCTATTCATATGGAGTTTTTTCCTCCTGCGCCACAAAAGGTCGCCGACAGTGATCACTAGTTGTAAATAATTGCCTCACCTGAAAAATCCT CCCTGGGTTCAAAGCTGAAGGTGTTGTTCTAAGAGTAGAAATGTACTTTGTGATCAAGTTCCTGGGTAGCTGCTATGCCATTCTTATGCTTATGTATGTTGTTTAATGTGGGA TTTTTTTCCATCTTAAATGTTTTTAGTCCCTTTTGTAAGAAGAGTTAGTTCATGAACGATGACGGCCTAAATTCTGCGGTTATCATCAAATTCCCCATTTTCTTGTCAAAAAAA]


>consensus_13407#0 CGCCTCCACTTTCCCTTCCCTTCCTCCTCCACCTCCACCTCCTCGTCGCGATCCAAATCC GAATCCGGCCATGGACGCCGGGGCGCAGCCGCCGGACACGGAGATGGCGGAGGCCGGCGG CGGGCAGCAGCCGCCTGCTGCGGCTGCGGCGGCGGGGGCGGGGGCAGGGGCGGGGATGAT GGAGAACATCCAGGCGACGCTGAGCCATGGCGGGAGGTTCATCCAGTACAACATCTTCGG GAACGTGTTCGAGGTCACCGCCAAGTACAAGCCCCCCATCCTCCCCATCGGCAAGGGCGC CTACGGCATCGTCTGCTCGGCGCTCAACTCGGAGACGGGGGAGCAGGTGGCGATCAAGAA GATCGCCAACGCGTTCGACAACAAGATCGACGCCAAGCGCACGCTCAGGGAGATCAAGCT GCTCCGCCATATGGACCACGAGAATATTGTTGCCATAAGGGATATCATACCTCCTCCACA AAGGAATTCATTCAATGACGTTTATATTGCATATGAATTGATGGATACTGATCTGCATCA AATTATTCGCTCAAATCAAGCATTGTCAGAGGAGCACTGCCAGTATTTCCTTTATCAGAT TCTCCGTGGCTTGAAGTATATACATTCAGCAAATGTCCTTCACCGAGACTTGAAGCCCAG CAACCTACTTTTGAATGCAAATTGTGATCTCAAAATTTGTGATTTTGGACTTGCTCGTAC CACCTCAGAAACCGATTTTATGACTGAGTACGTTGTCACAAGATGGTATAGGGCACCGGA ACTTCTGTTGAATTCCTCTGAATATACTGCAGCAATTGATGTGTGGTCCGTGGGCTGTAT TTTTATGGAACTCATGGATCGTAAACCTTTGTTTCCTGGAAGAGATCATGTCCATCAATT ACGTCTACTAATGGAGCTCATTGGAACGCCAAATGAAGCTGATCTGGATTTTGTAAATGA AAATGCAAGAAGATACATTCGCCAACTTCCTAGACATGCAAGGCAGTCCTTTCCTGAAAA ATTTCCACATGTTCATCCTTTAGCAATTGATCTGGTTGAAAAGATGCTGACATTTGATCC TAGACAGAGAATAACAGTTGAAGGTGCCCTTGCACATCCTTACCTGGCATCACTGCATGA CATAAGTGATGAGCCAGTCTGCTCATCACCCTTCAGCTTTGACTTCGAGCAGCATGCATT GTCCGAGGAACAAATGAAGGATCTAATCTACCAAGAAGGCCTTGCGTTCAACCCTGATTA CCAGTAGCTGGTGTTCTATTTCAGCCTTGGATTGATTCTATTCATATGGAGTTTTTTCCT CCTGCGCCACAAAAGGTCGCCGACAGTGATCACTAGTTGTAAATAATTGCCTCACCTGAA AAATCCTCCCTGGTTCAAAGCTGAAGGTGTTGTTCTAAGAGTAGAAATGTACTTTGTGAT CAAGTTCCTGGGTAGCTGCTATGCCATTCTTATGCTTATGTATGTTGTTTAATGTGGGAT TTTTTTCCATCTTAAATGTTTTTAGTCCCTTTTGTAAGAAGAGTTAGTTCATGAACGATG ACGGCCTAAATTCTGCGGTTATCATCAAATTCCCCATTTTCTTGTCAAAAAAA



consensusID : consensus_13407#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 686
fasta sequence
                              [GCCTGATTAGGCCGAGACAAGGGGGCTGATCTGGATTTTGTAAATGAAAATGCAAGAAGATACATTCGCCAACTTCCTAGACATGCAAGGCAGTCCTTTCCTGAAAAATTTCCACATGTTCATCCTTTAGCAATTGATCTGGTTGAAAAGATGCTGACATTTGATCCTAGACAGAGAATAACAGTTGAAGGTGCCCTTGCACATCCTTACCTGGCATCACTGCATGACATAAGTGATGAGCCAGTCTGCTCATCACCCTTCAGCTTTGACTTCGAGCAGCATGCATTGTCCGAGGAACAAATGAAGGATCTAATCTACCAAGAAGGCCTTGCGTTCAACCCTGATTACCAGTAGCTGGTGTTCTATTTCAGCCTTGGATTGATTCTATTCATATGGAGTTTTTTCCTCCTGCGCCACAAAAGGTCGCCGACAGTGATCACTAGTTGTAAATAATTGCCTCACCTGAAAAATCCTCCCTGGTTCAAAGCTGAAGGTGTTGTTCTAAGAGTAGAAATGTACTTTGTGATCAAGTTCCTGGGTAGCTGCTATGCCATTCTTATGCTTATGTATGTTGTTTAATGTGGGATTTTTTTCCATTTTAAATGTTTTTAGTCCCTTTTGTAAGAAGAGTTAGTTCATGAACGATGACGGCCTAAATTTTGCGGTTATCATCAAAAAAAAAAAAA]

[-] EMBL CA760368             [GCCTGATTAGGCCGAGACAAGGGGGCTGATCTGGATTTTGTAAATGAAAATGCAAGAAGATACATTCGCCAACTTCCTAGACATGCAAGGCAGTCCTTTCCTGAAAAATTTCCACATGTTCATCCTTTAGCAATTGATCTGGTTGAAAAGATGCTGACATTTGATCCTAGACAGAGAATAACAGTTGAAGGTGCCCTTGCACATCCTTACCTGGCATCACTGCATGACATAAGTGATGAGCCAGTCTGCTCATCACCCTTCAGCTTTGACTTCGAGCAGCATGCATTGTCCGAGGAACAAATGAAGGATCTAATCTACCAAGAAGGCCTTGCGTTCAACCCTGATTACCAGTAGCTGGTGTTCTATTTCAGCCTTGGATTGATTCTATTCATATGGAGTTTTTTCCTCCTGCGCCACAAAAGGTCGCCGACAGTGATCACTAGTTGTAAATAATTGCCTCACCTGAAAAATCCTCCCTGGTTCAAAGCTGAAGGTGTTGTTCTAAGAGTAGAAATGTACTTTGTGATCAAGTTCCTGGGTAGCTGCTATGCCATTCTTATGCTTATGTATGTTGTTTAATGTGGGATTTTTTTCCATTTTAAATGTTTTTAGTCCCTTTTGTAAGAAGAGTTAGTTCATGAACGATGACGGCCTAAATTTTGCGGTTATCATCAAAAAAAAAAAAA]


>consensus_13407#1 GCCTGATTAGGCCGAGACAAGGGGGCTGATCTGGATTTTGTAAATGAAAATGCAAGAAGA TACATTCGCCAACTTCCTAGACATGCAAGGCAGTCCTTTCCTGAAAAATTTCCACATGTT CATCCTTTAGCAATTGATCTGGTTGAAAAGATGCTGACATTTGATCCTAGACAGAGAATA ACAGTTGAAGGTGCCCTTGCACATCCTTACCTGGCATCACTGCATGACATAAGTGATGAG CCAGTCTGCTCATCACCCTTCAGCTTTGACTTCGAGCAGCATGCATTGTCCGAGGAACAA ATGAAGGATCTAATCTACCAAGAAGGCCTTGCGTTCAACCCTGATTACCAGTAGCTGGTG TTCTATTTCAGCCTTGGATTGATTCTATTCATATGGAGTTTTTTCCTCCTGCGCCACAAA AGGTCGCCGACAGTGATCACTAGTTGTAAATAATTGCCTCACCTGAAAAATCCTCCCTGG TTCAAAGCTGAAGGTGTTGTTCTAAGAGTAGAAATGTACTTTGTGATCAAGTTCCTGGGT AGCTGCTATGCCATTCTTATGCTTATGTATGTTGTTTAATGTGGGATTTTTTTCCATTTT AAATGTTTTTAGTCCCTTTTGTAAGAAGAGTTAGTTCATGAACGATGACGGCCTAAATTT TGCGGTTATCATCAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13407#0      CGCCTCCACTTTCCCTTCCCTTCCTCCTCCACCTCCACCTCCTCGTCGCGATCCAAATCC 60
consensus_13407#1      ------------------------------------------------------------
                                                                                   

consensus_13407#0      GAATCCGGCCATGGACGCCGGGGCGCAGCCGCCGGACACGGAGATGGCGGAGGCCGGCGG 120
consensus_13407#1      ------------------------------------------------------------
                                                                                   

consensus_13407#0      CGGGCAGCAGCCGCCTGCTGCGGCTGCGGCGGCGGGGGCGGGGGCAGGGGCGGGGATGAT 180
consensus_13407#1      ------------------------------------------------------------
                                                                                   

consensus_13407#0      GGAGAACATCCAGGCGACGCTGAGCCATGGCGGGAGGTTCATCCAGTACAACATCTTCGG 240
consensus_13407#1      ------------------------------------------------------------
                                                                                   

consensus_13407#0      GAACGTGTTCGAGGTCACCGCCAAGTACAAGCCCCCCATCCTCCCCATCGGCAAGGGCGC 300
consensus_13407#1      ------------------------------------------------------------
                                                                                   

consensus_13407#0      CTACGGCATCGTCTGCTCGGCGCTCAACTCGGAGACGGGGGAGCAGGTGGCGATCAAGAA 360
consensus_13407#1      ------------------------------------------------------------
                                                                                   

consensus_13407#0      GATCGCCAACGCGTTCGACAACAAGATCGACGCCAAGCGCACGCTCAGGGAGATCAAGCT 420
consensus_13407#1      ------------------------------------------------------------
                                                                                   

consensus_13407#0      GCTCCGCCATATGGACCACGAGAATATTGTTGCCATAAGGGATATCATACCTCCTCCACA 480
consensus_13407#1      ------------------------------------------------------------
                                                                                   

consensus_13407#0      AAGGAATTCATTCAATGACGTTTATATTGCATATGAATTGATGGATACTGATCTGCATCA 540
consensus_13407#1      ------------------------------------------------------------
                                                                                   

consensus_13407#0      AATTATTCGCTCAAATCAAGCATTGTCAGAGGAGCACTGCCAGTATTTCCTTTATCAGAT 600
consensus_13407#1      ------------------------------------------------------------
                                                                                   

consensus_13407#0      TCTCCGTGGCTTGAAGTATATACATTCAGCAAATGTCCTTCACCGAGACTTGAAGCCCAG 660
consensus_13407#1      ------------------------------------------------------------
                                                                                   

consensus_13407#0      CAACCTACTTTTGAATGCAAATTGTGATCTCAAAATTTGTGATTTTGGACTTGCTCGTAC 720
consensus_13407#1      ------------------------------------------------------------
                                                                                   

consensus_13407#0      CACCTCAGAAACCGATTTTATGACTGAGTACGTTGTCACAAGATGGTATAGGGCACCGGA 780
consensus_13407#1      ------------------------------------------------------------
                                                                                   

consensus_13407#0      ACTTCTGTTGAATTCCTCTGAATATACTGCAGCAATTGATGTGTGGTCCGTGGGCTGTAT 840
consensus_13407#1      ------------------------------------------------------------
                                                                                   

consensus_13407#0      TTTTATGGAACTCATGGATCGTAAACCTTTGTTTCCTGGAAGAGATCATGTCCATCAATT 900
consensus_13407#1      ------------------------------------------------------------
                                                                                   

consensus_13407#0      ACGTCTACTAATGGAGCTCATTGGAACGCCA-AATGAAGCTGATCTGGATTTTGTAAATG 959
consensus_13407#1      --------------GCCTGATTAGGCCGAGACAAGGGGGCTGATCTGGATTTTGTAAATG 46
                                       ** *** *  **  * ** *  **********************

consensus_13407#0      AAAATGCAAGAAGATACATTCGCCAACTTCCTAGACATGCAAGGCAGTCCTTTCCTGAAA 1019
consensus_13407#1      AAAATGCAAGAAGATACATTCGCCAACTTCCTAGACATGCAAGGCAGTCCTTTCCTGAAA 106
                       ************************************************************

consensus_13407#0      AATTTCCACATGTTCATCCTTTAGCAATTGATCTGGTTGAAAAGATGCTGACATTTGATC 1079
consensus_13407#1      AATTTCCACATGTTCATCCTTTAGCAATTGATCTGGTTGAAAAGATGCTGACATTTGATC 166
                       ************************************************************

consensus_13407#0      CTAGACAGAGAATAACAGTTGAAGGTGCCCTTGCACATCCTTACCTGGCATCACTGCATG 1139
consensus_13407#1      CTAGACAGAGAATAACAGTTGAAGGTGCCCTTGCACATCCTTACCTGGCATCACTGCATG 226
                       ************************************************************

consensus_13407#0      ACATAAGTGATGAGCCAGTCTGCTCATCACCCTTCAGCTTTGACTTCGAGCAGCATGCAT 1199
consensus_13407#1      ACATAAGTGATGAGCCAGTCTGCTCATCACCCTTCAGCTTTGACTTCGAGCAGCATGCAT 286
                       ************************************************************

consensus_13407#0      TGTCCGAGGAACAAATGAAGGATCTAATCTACCAAGAAGGCCTTGCGTTCAACCCTGATT 1259
consensus_13407#1      TGTCCGAGGAACAAATGAAGGATCTAATCTACCAAGAAGGCCTTGCGTTCAACCCTGATT 346
                       ************************************************************

consensus_13407#0      ACCAGTAGCTGGTGTTCTATTTCAGCCTTGGATTGATTCTATTCATATGGAGTTTTTTCC 1319
consensus_13407#1      ACCAGTAGCTGGTGTTCTATTTCAGCCTTGGATTGATTCTATTCATATGGAGTTTTTTCC 406
                       ************************************************************

consensus_13407#0      TCCTGCGCCACAAAAGGTCGCCGACAGTGATCACTAGTTGTAAATAATTGCCTCACCTGA 1379
consensus_13407#1      TCCTGCGCCACAAAAGGTCGCCGACAGTGATCACTAGTTGTAAATAATTGCCTCACCTGA 466
                       ************************************************************

consensus_13407#0      AAAATCCTCCCTGGTTCAAAGCTGAAGGTGTTGTTCTAAGAGTAGAAATGTACTTTGTGA 1439
consensus_13407#1      AAAATCCTCCCTGGTTCAAAGCTGAAGGTGTTGTTCTAAGAGTAGAAATGTACTTTGTGA 526
                       ************************************************************

consensus_13407#0      TCAAGTTCCTGGGTAGCTGCTATGCCATTCTTATGCTTATGTATGTTGTTTAATGTGGGA 1499
consensus_13407#1      TCAAGTTCCTGGGTAGCTGCTATGCCATTCTTATGCTTATGTATGTTGTTTAATGTGGGA 586
                       ************************************************************

consensus_13407#0      TTTTTTTCCATCTTAAATGTTTTTAGTCCCTTTTGTAAGAAGAGTTAGTTCATGAACGAT 1559
consensus_13407#1      TTTTTTTCCATTTTAAATGTTTTTAGTCCCTTTTGTAAGAAGAGTTAGTTCATGAACGAT 646
                       *********** ************************************************

consensus_13407#0      GACGGCCTAAATTCTGCGGTTATCATCAAATTCCCCATTTTCTTGTCAAAAAAA 1613
consensus_13407#1      GACGGCCTAAATTTTGCGGTTATCATCAAA--------------AAAAAAAAAA 686
                       ************* ****************                 *******




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)