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Oryza sativa
cluster # 13412 cluster # 13412       Sequences # 13       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13412#0 length = 1252 sequences # 13  

consensusID : consensus_13412#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 13
consensus length = 1252
fasta sequence
                              [CTCGTCTCTCTCTCCCCAACCTACTCTCTTCTCCTGCAGTCCAGCTCTCGGTTCCTTGCTCCTCCAAGTCTCCGTCGGATCCATCCTCCCCTACCCCGCGAAACCCTAGCCTCCCGAGCCCCTCGCCGCCGGCGGA-TGGCGACGGCTTGATCGGCCCTGGACACCCGCCCCGCCTCGCCTCGCCTCTGCCTCTCCCCGCTCCCCCCGCGCATCTGATGTTCCTCTCCCGCATCGTCCTCCGCGACCTGGACTCCATCGACTCCCCCGCCGCCTCCATGGCGTCCTCCAAGAAGCTGGTGACGCGTGACGAGTGGGAGCGGAAGCTCCGCGACGTCAAGATCCGCAAGGAGGACATGAACCGCCTCGTCATGAACTTCCTCGTCACCGAGGGCTTCGTCGACGCTGCGGACAAGTTCCGCGTCGAGTCCGGCACCCAACCGGATATTGACCTGGCCACCATCACGGATCGGATGGAGGTGAAGAGAGCGGTGCAATCAGGGAATGTTCAGGAGGCCATCGAGAAGATTAACGATCTTAATCCCACGATTCTGGACACAAATCCCCAACTGTACTTTCATCTGCAACAACAGAAGCTAATAGAATTGATTCGTGCGGGAAAAATAAATGAAGCTTTGGAGTTTGCACAAGAAGAACTCGCTCCAAGAGGCGAAGAAAATCAAGTCTTTCTTGAAGAAA-TAGAGAAAA--CTGTAGCACTTT-TGGTT--TTT-GAAGATATAAAGAACT-GTCCATATGGGGAACTATTGGATGTTTCCCAACGATTGAA-GACCGCAAGTGAAGTTAATGCTGCCATTCTTACAAGCCAAAGTCATGAGAAAGATCC-AAAGCTCCCTAGCCTTCTAAAGATGTTAATTTGGACTCAAAA-CCAACTGGACGAAAAGGCAGCATATCCACGAATCAACAATTTCTCCACTGCCGCACTTGAAGATCCA-GCGATTTGAGGCCGCTCGGGAGGGGATGGCTAAAGAATGTAGGCACCATACCATGACTGTTTTCACACA-TTGTACTTCCTGGATCTGTTGTGCTCTTCACCTGCAAGGCTGCAACAGTGAATCCAGTGCTTTCTTCGGTCTTTGATCTCAAATGC-AAAAAACGTGGAATCA-GAAAAAAAAATCGCTCGTGTTGTACATGATGTAGAAGATGTTCATCACATTTTAATCTGTGAAAAATGTTCGATTTGATTTGAGTTCAAAAAAAATCTTTTGTCGAACCTTTCACTTCTATTACACGAAATGTT]

[+] EMBL AK070766             [CTCGTCTCTCTCTCCCCAACCTACTCTCTTCTCCTGCAGTCCAGCTCTCGGTTCCTTGCTCCTCCAAGTCTCCGTCGGATCCATCCTCCCCTACCCCGCGAAACCCTAGCCTCCCGAGCCCCTCGCCGCCGGCGGA TGGCGACGGCTTGATCGGCCCTGGACACCCGCCCCGCCTCGCCTCGCCTCTGCCTCTCCCCGCTCCCCCCGCGCATCTGATGTTCCTCTCCCGCATCGTCCTCCGCGACCTGGACTCCATCGACTCCCCCGCCGCCTCCATGGCGTCCTCCAAGAAGCTGGTGACGCGTGACGAGTGGGAGCGGAAGCTCCGCGACGTCAAGATCCGCAAGGAGGACATGAACCGCCTCGTCATGAACTTCCTCGTCACCGAGGGCTTCGTCGACGCTGCGGACAAGTTCCGCGTCGAGTCCGGCACCCAACCGGATATTGACCTGGCCACCATCACGGATCGGATGGAGGTGAAGAGAGCGGTGCAATCAGGGAATGTTCAGGAGGCCATCGAGAAGATTAACGATCTTAATCCCACGATTCTGGACACAAATCCCCAACTGTACTTTCATCTGCAACAACAGAAGCTAATAGAATTGATTCGTGCGGGAAAAATAAATGAAGCTTTGGAGTTTGCACAAGAAGAACTCGCTCCAAGAGGCGAAGAAAATCAAGTCTTTCTTGAAGAAA TAGAGAAAA  CTGTAGCACTTT TGGTT  TTT GAAGATATAAAGAACT GTCCATATGGGGAACTATTGGATGTTTCCCAACGATTGAA GACCGCAAGTGAAGTTAATGCTGCCATTCTTACAAGCCAAAGTCATGAGAAAGATCC AAAGCTCCCTAGCCTTCTAAAGATGTTAATTTGGACTCAAAA CCAACTGGACGAAAAGGCAGCATATCCACGAATCAACAATTTCTCCACTGCCGCACTTGAAGATCCA GCGATTTGAGGCCGCTCGGGGGGGGATGGCTAAAGAATGTAGGCACCATACCATGACTGTTTTCACACA TTGTACTTCCTGGATCTGTTGTGCTCTTCACCTGCAAGGCTGCAACAGTGAATCCAGTGCTTTCTTCGGTCTTTGATCTCAAATGC AAAAAACGTGGAATCA GAAAAAAAAATCGCTCGTGTTGTACATGATGTAGAAGATGTTCATCACATTTTAATCTGTGAAAAATGTTCGATTTG                                                         ]
[+] EMBL OSC1011              [           CTCCCCAACCTACTCTCTTCTCCTGCAGTCCAGCTCTCGGTTCCTTGCTCCTCCAAGTCTCCGTCGGATCCATCCTCCCCTACCCCGCGAAACCCTAGCCTCCCGAGCCCCTCGNCGNCGG GGAGTGGCGACGGCTTGATCGGCCCTGGACACCCGTCNCGCCTCGNCTCGNCTCTGACTCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AK060384             [                                                   TTCCTTGCTCCTCCAAGTCTCCGTCGGATCCATCCTCCCCTACCCCGCGAAACCCTAGCCTCCCGAGCCCCTCGCCGCCGGCGGA TGGCGACGGCTTGATCGGCCCTGGACACCCGCCCCGCCTCGCCTCGCCTCTGCCTCTCCCCGCTCCCCCCGCGCATCTGATGTTCCTCTCCCGCATCGTCCTCCGCGACCTGGACTCCATCGACTCCCCCGCCGCCTCCATGGCGTCCTCCAAGAAGCTGGTGACGCGTGACGAGTGGGAGCGGAAGCTCCGCGACGTCAAGATCCGCAAGGAGGACATGAACCGCCTCGTCATGAACTTCCTCGTCACCGAGGGCTTCGTCGACGCTGCGGACAAGTTCCGCGTCGAGTCCGGCACCCAACCGGATATTGACCTGGCCACCATCACGGATCGGATGGAGGTGAAGAGAGCGGTGCAATCAGGGAATGTTCAGGAGGCCATCGAGAAGATTAACGATCTTAATCCCACGATTCTGGACACAAATCCCCAACTGTACTTTCATCTGCAACAACAGAAGCTAATAGAATTGATTCGTGCGGGAAAAATAAATGAAGCTTTGGAGTTTGCACAAGAAGAACTCGCTCCAAGAGGCGAAGAAAATCAAGTCTTTCTTGAAGAAA TAGAGAAAA  CTGTAGCACTTT TGGTT  TTT GAAGATATAAAGAACT GTCCATATGGGGAACTATTGGATGTTTCCCAACGATTGAA GACCGCAAGTGAAGTTAATGCTGCCATTCTTACAAGCCAAAGTCATGAGAAAGATCC AAAGCTCCCTAGCCTTCTAAAGATGTTAATTTGGACTCAAAA CCAACTGGACGAAAAGGCAGCATATCCACGAATCAACAATTTCTCCACTGCCGCGCTTGAAGATCCA GCGATTTGAGGCCGCTCGGGAGGGGATGGCTAAAGAATGTAGGCACCATACCATGACTGTTTTCACACA TTGTACTTCCTGGATCTGTTGTGCTCTTCACCTGCAAGGCTGCAACAGTGAATCCAGTGCTTTCTTCGGTCTTTGATCTCAAATGC AAAAAACGTGGAATCA GAAAAAAAAATCGCTCGTGTTGTACATGATGTAGAAGATGTTCATCACATTTTAATCTGTGAAAAATGTTCGATTTGATTT                                                     ]
[+] EMBL BE041012             [                                                                                      TCCCCTACCCCGCGAAACCCTAGCCTCCCGAGCCCCTCGCCGCCGGCGGA TGGCGACGGCTTGATCGGCCCTGGACACCCGCCCCGCCTCGCCTCGCCTCTGCCTCTCCCCGCTCCCCCCGCGCATCTGATGTTCCTCTCCCGCATCGTCCTCCGCGACCTGGACTCCATCGACTCCCCCGCCGCCTCCATGGCGTCCTCCAAGAAGCTGGTGACGCGTGACGAGTGGGAGCGGAAGCTCCGCGACGTCAAGATCCGCAAGGAGGACATGAACCGCCTCGTCATGAACTTCCTCGTCACCGAGGGCTTCGTCGACGCTGCGGACAAGTTCCGCGTCGAGTCCGGCACCCAACCGGATATTGACCTGGCCACCATCACGGATCGGATGGAGGTGAAGAGAGCGGTGCAATCAGGGAATGTTCAGGAGGCCATCGAGAAGATTAACGATCTTAATCCCACGATTCTGGACACAAATCCCCAACTGTACTTTCATCTGCAACAACAGAAGCTAATAGAATTGATTCGTGCGGGAAAAATAAATGAAGCTTCGGAGTTTGCACAAGAAGAACTCGCTCCAAGAGGCGAAGAAAATCAAGTCTTTCTTGAAGAAA TAGAGAAAA  CTGT GCACTTT TGGTT  TTT GAAGATATAAAGAACT GTCCATATGGGGAACTATTGGATG TTATCAACGATTGAA GACC CAAG GAAGTT ATGCTGTC TTGCTACAAGC  AAGTTATG GAAAGATCC  AAGCT TCTA CC TCTAAAGAgt                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL BF430478             [                                                                                                                                                                                                                                                                   ACTCCCCCGCCGCCTCCATGGCGTCCTCCAAGAAGCTGGTGACGCGTGACGAGTGGGAGCGGAAGCTCCGCGACGTCAAGATCCGCAAGGAGGACATGAACCGCCTCGTCATGAACTTCCTCGTCACCGAGGGCTTCGTCGACGCTGCGGACAAGTTCCGCGTCGAGTCCGGCACCCAACCGGATATTGACCTGGCCACCATCACGGATCGGATGGAGGTGAAGAGAGCGGTGCAATCAGGGAATGTTCAGGAGGCCATCGAGAAGATTAACGATCTTAATCCCACGATTCTGGACACAAATCCCCAACTGTACTTTCATCTGCAACAACAGAAGCTAATAGAATTGATTCGTGCGGGAAAAATAAATGAAGCTTTGGAGTTTGCACAAGAAGAACTCGCTCCAAGAGGCGAAGAAAATCAAGTCTTTCTTGAAGAAA TAGAGAAAA  CTGTAGCACTTT TGGTT  TTT GAAGATATAAAGAACT GTCCATATGGGGAACTATTGGATGTTTCCCAACGATTGAA GACCGCAAGTGAAGTTAATGCTGCCATTCTTACAAGCCAAAGTCATGAGAAAGATCCAAAAGCT CCTAGCCTTCTAAAGATGTTAATTTGGACTCAAAACCCAATTGGACGAAAAGGGAGCATATCCACGAATTAACAATTTCTTCACTGCCGCAC                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL AU223243             [                                                                                                                                                                                                                                                                                                                  GACGAGTGGGAGCGGAAGCTCCGCGACGTCAAGATCCGCAAGGAGGACATGAACCGCCTCGTCATGAACTTCCTCGTCACCGAGGGCTTCGTCGACGCTGCGGACAAGTTCCGCGTCGAGTCCGGCACCCAACCGGATATTGACCTGGCCNCCATCACGGATCGGATGGAGGTGAAGAGAGCGGTGCAATCAGGGAATGTTCAGGAGGCCATCGAGAAGATTAACGATCTTAATCCCNCGATTCTGGACACAAATCCCCAACTGTACTTTCATCTGCAACAACAGAAGCTAATAGAATTGATTCGTGCGGGAAAAATAAATGAAGCTTTGGAGTTTGCACAAGAAGAACTCGCTCCAAGAGGCGAAGAAAATCAAGTCTTTCTTGAAGAAA TAGAGAAAA  CTGTAGCACTTT TGGTT  TTT AAAAAAAAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AU174765             [                                                                                                                                                                                                                                                                                                                                                   ATCCGCAAGGAGGACATGAACCGCCTCGTCATGAACTTCCTCGTCACCGAGGGCTTCGTCGACGCTGCGGACAAGTTCCGCGTCGAGTCCGGCACCCAACCGGATATTGACCTGGCCACCATCACGGATCGGATGGAGGTGAAGAGAGCGGTGCAATCAGGGAATGTTCAGGAGGCCATCGAGAAGATTAACGATCTTAATCCCACGATTCTGGACACAAATCCCCAACTGTACTTTCATCTGCAACAACAGAAGCTAATAGAATTGATTCGTGCGGGAAAAATAAATGAAGCTTTGGAGTTTGCACAAGAAGAACTCGCTCCAAGAGGCGAAGAAAATCAAGTCTTTCTTGAAGAAA TAGAGAAAA  CTGTAGCACTTT TGGTT  TTT GAAGATAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CB681212             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     AACTGTACTTTCATCTGCAACAACAGAAGCTAATAGAATTGATTCGTGCGGGAAAAATAAATGAAGCTTTGGAGTTTGCACAAGAAGAACTCGCTCCAAGAGGCGAAGAAAATCAAGTCTTTCTTGAAGAAA TAGAGAAAA  CTGTAGCACTTT TGGTT  TTT GAAGATATAAAGAACT GTCCATATGGGGAACTATTGGATGTTTCCCAACGATTGAA GACCGCAAGTGAAGTTAATGCTGCCATTCTTACAAGCCAAAGTCATGAGAAAGATCC AAAGCTCCCTAGCCTTCTAAAGATGTTAATTTGGACTCAAAA CCAACTGGACGAAAAGGCAGCATATCCACGAATCAACAATTTCTCCACTGCCGCACTTGAAGATCCA GCGATTTGAGGCCGCTCGGGAGGGGATGGCTAAAGAATGTAGGCACCATACCATGACTGTTTTCACACA TTGTACTTCCTGGATCTGTTGTGCTCTTCACCTGCAAGGCTGCAACAGTGAATCCAGTGCTTTCTTCGGTCTTTGATCTCAAATGC AAAAAACGTGGAATCA GAAAAAAAAATCGCTCGTGTTGTACATGATGTAGAAGATGTTCATCACATTTTAATCTGTGAAAAATGTTCGATTTGATTTGAGTTCATTCAACATCTTTTGTCGAACCTTTCACTTCTATTACACGAAATGTT]
[-] EMBL BE040347             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     atCTGTACTTTCATCTGCAACAACAGAAGCTAATAGAATTGATTCGTGCGGGAAAAATAAATGAAGCTTTGGAGTNTGCACAAGAAGAACTCGCTCCAAGAGGCGAAGAAAATCAAGTCTTTCTTGAAGAAA TAGAGAAAA  CTGTAGCACTTT TGGTT  TTT GAAGATATAAAGAACT GTCCATATGGGGAACTATTGGATGTTTCCCAACGATTGAA GACCGCAAGTGAAGTTAATGCTGCCATTCTTACAAGCCAAAGTCATGAGAAAGATCC AAAGCTCCCTAGCCTTCTAAAGATGTTAATTTGGACTCAAAA CCAACTGGACGAAAAGGCAGCATATCCACGAATCAACAATTTCTCCACTGCCGCACTTGAAGATCCA GCGATTTGAGGCCGCTCGGGAGGGGATGGCTAAAGAATGTAGGCACCATACCATGACTGTTTTCACACA TTGTACTTTCTGGATCTGTTGTGCTCTTCACCTGCAAGGCTGCAACAGTGAATCCAGTGCTTTCc                                                                                                                                                                             ]
[+] EMBL BI807273             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TCTTTCTGGAAGAAAGTAGAGAAAAACCTGTAGCACTTTNTGGTTTGTTTGGAAGATATAAAGAACTGGTCCATATGGGGAACTATTGGATGTTTCCCAACGATTGAA GACCGCAAGTGAA TTAATGCT CCATTCTTACAAGCC AAGTCATGAGAAAGATCC  AAGCTCCCTAGCCTTCTAAAGATGTTAATTTGGACTCATAA CC ACTGGACGAAAAGGCAGCATATCCACGAATCAAC ATTTCTCCACT CCGCACTTGAAGATCCA GCGATTTGA GCCGCTCGGGAGGGGATGGCTAAAGAATGTAGGCACCATACCATGACTGTTTTCACAC  TTGTACTTCCTGGATCTGTTGTGCTCTTCACCTGCAAGGCTGCAACAGTGAATCCAGTGCTTTCTTCGGTCTTTGATCTC AATGC   AAAACGTGGAATCA GAAAAAAAAATCGCTCGTGTTGTACATGATGTAGAAGATGTTCATCAC TTTTAATCTGTGAAAAATGTTCGATTTGATTTGA                                                   ]
[+] EMBL BM038010             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         aAACTATTGGATGTTTCCCCACGATTGAACGCCCGCAAGTGAAGTTAATCCTCCCATTCTTACAACCCAAAGTCATGAGAAAGATCC CAAGCTCCCTACCCTTCTAAAGATGTTGATTTGGACTCCAAA CCCACTGGACGAAAA GCAGCATATCCCCGAATCAACAATTTCTCCACTGCCGCACTTGAAGATCCACGCGATTTGA GCCGCTCGGGAGGGGATGGCTAAAGAATGTA GCACCATACCCTGACTGTTTTCACACACTTGTACTTTCTGGATCTGTTGTGCTCTTCACCTGCAAGGCT CAACAGTGAATCCCGTGCTTTCTTCGGTCTTTGATCTCAATCCC AAAAAACGTGGAATCA GAAAAAAAAATCGCTCGTGTTGTACATGATGTAGAAGATGTTCATCACATTTTAATCTGTGAAAAATGTTCGATTTGATTTGGGTTCAAAAAAAAaa                                     ]
[+] EMBL AU174764             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 GGATGTTTCCCAACGATTGAA GNCCGCAAGTGAAGTTAATGCTGCCATTCTTACAAGCCAAAGTCATGAGAAAGATCC AAAGCTCCCTAGCCTTCTAAAGATGTTAATTTGGACTCAAAA CCAACTGGACGAAAAGGCAGCATATCCACGAATCAACAATTTCTCCACTGCCGCACTTGAAGATCCA GCGATTTGAGGCCGCTCGGGAGGGGATGGCTAAAGAATGTAGGCNCCATACCATGACTGTTTTCACACA TTGTACTTCCTGGATCTGTTGTGCTCTTCACCTGCAAGGCTGCAACAGTGAATCCAGTGCTTTCTTCGGTCTTTGATCTCAAATGC AAAAAACGTGGAATCA GAAAAAAAAATCGCTCGTGTTGTACATGATGTAGAAGATGTTCATCACATTTTAATCTGTGAAAAATGTTCGATTTGATTTGAGTTCAAAAAAAA                                       ]
[+] EMBL CA764653             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 AGAATGTAGGCACCATACCATGACTGTTTT ACACA TTGTACTTTCTGGATCTGTTGTGCTCTTCACCTGCAAGGCTGCAACAGTGAATCCAGTGCTTTCTTCGGTCTTTGATCTCAAATGCAAAAAAACGTGGAATCATGAAAAAAAAATCGCTCGTGTTGTACATGATGTAGAAGATGTTCATCACATTTTAATCTGTGAAAAATG                                                                  ]


>consensus_13412#0 CTCGTCTCTCTCTCCCCAACCTACTCTCTTCTCCTGCAGTCCAGCTCTCGGTTCCTTGCT CCTCCAAGTCTCCGTCGGATCCATCCTCCCCTACCCCGCGAAACCCTAGCCTCCCGAGCC CCTCGCCGCCGGCGGATGGCGACGGCTTGATCGGCCCTGGACACCCGCCCCGCCTCGCCT CGCCTCTGCCTCTCCCCGCTCCCCCCGCGCATCTGATGTTCCTCTCCCGCATCGTCCTCC GCGACCTGGACTCCATCGACTCCCCCGCCGCCTCCATGGCGTCCTCCAAGAAGCTGGTGA CGCGTGACGAGTGGGAGCGGAAGCTCCGCGACGTCAAGATCCGCAAGGAGGACATGAACC GCCTCGTCATGAACTTCCTCGTCACCGAGGGCTTCGTCGACGCTGCGGACAAGTTCCGCG TCGAGTCCGGCACCCAACCGGATATTGACCTGGCCACCATCACGGATCGGATGGAGGTGA AGAGAGCGGTGCAATCAGGGAATGTTCAGGAGGCCATCGAGAAGATTAACGATCTTAATC CCACGATTCTGGACACAAATCCCCAACTGTACTTTCATCTGCAACAACAGAAGCTAATAG AATTGATTCGTGCGGGAAAAATAAATGAAGCTTTGGAGTTTGCACAAGAAGAACTCGCTC CAAGAGGCGAAGAAAATCAAGTCTTTCTTGAAGAAATAGAGAAAACTGTAGCACTTTTGG TTTTTGAAGATATAAAGAACTGTCCATATGGGGAACTATTGGATGTTTCCCAACGATTGA AGACCGCAAGTGAAGTTAATGCTGCCATTCTTACAAGCCAAAGTCATGAGAAAGATCCAA AGCTCCCTAGCCTTCTAAAGATGTTAATTTGGACTCAAAACCAACTGGACGAAAAGGCAG CATATCCACGAATCAACAATTTCTCCACTGCCGCACTTGAAGATCCAGCGATTTGAGGCC GCTCGGGAGGGGATGGCTAAAGAATGTAGGCACCATACCATGACTGTTTTCACACATTGT ACTTCCTGGATCTGTTGTGCTCTTCACCTGCAAGGCTGCAACAGTGAATCCAGTGCTTTC TTCGGTCTTTGATCTCAAATGCAAAAAACGTGGAATCAGAAAAAAAAATCGCTCGTGTTG TACATGATGTAGAAGATGTTCATCACATTTTAATCTGTGAAAAATGTTCGATTTGATTTG AGTTCAAAAAAAATCTTTTGTCGAACCTTTCACTTCTATTACACGAAATGTT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)