Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 13419 cluster # 13419       Sequences # 13       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13419#0 length = 1124 sequences # 12  
consensus_13419#1 length = 258 sequences # 1  

consensusID : consensus_13419#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 12
consensus length = 1124
fasta sequence
                              [GCGTTCCTCTCCTTCCTCTCCTCCTCCCCGCCGCACCACACCGCGCCCTCATCCTCCGTCTCCTTCCTGGCAGCCCGTGTGCTGCCCGCCTCCCTCAGGGCCGCTGCCGCGGGGTCCCCAACTTCCGCCTCCCGCTCCCGGGGCCGAGGTGTCGCGGCCGTCGTCGCTCAGCTCCCCACCGCGAATCCAGAGGTGGCTTCTGGGGAGAAGAAGATCCGGTGGTCATCACGAGCGGTGAGGTCATTTGCAATGGCGGAGCTGGAGGCTCGGAAGATGAGGTACCCAACCACTGGCACTGAAGGACTCCTCATGGGCATCCTTGTCGAGGGAACTAGTGATGCAGCAAAACTTTTGCGTGCTAATGGAATTACGCTGCTCAAAGTGCGCGAGGAGGCAGCAAATGTGCTTGGGAAATCAGAAATGTTCTACTTTAGTCCTATGCACCCACCATTGACTGAAGCTGCACAACGAGCGCTTGATTGGGCTATCAATGAAAAACTGAAATCAGGTGAAGATGGAGAAGTAACCGCCAATCATCTGCTCCTGGGGATATGGTCAGATAAAGAGTCAGCTGGTCATAAAGTATTGGCTTCCCTTGGTTTTGATGATGAGAGAGCCAATTCACTGGCCAAAACGGCTGGTGAAGAGGCTGCTATGAGTCCTAGATAGCAAAAGGAGCCTTATAGTTTACTACTGAACTTCCCTGTGATGCAATGTGCTTGCGTTTGGAACCTCAAGTAACTTCTTGGCGACTCCAGTATCATGGCCCACGCATTAAGTTAACTTGAAGAGATTGCTTCTACAAGTTTTAGGGCTTTATTAAGATTGTTAGACTGAATGCAATATGTCAGACTCCCCTATTGCCCATACCTGTAAAAGC-AGTGCAATGTATTTTCAAAATGAGCATTT-CTGTTGCTTGCTCAGCTGGATTGGTGCAATTCTATTAAAAG-ATCC-TTTTGAAAGATAAAGATTTTGAACGGGTTCAGAGCTAATGTTTACTAGCATTCCATGGAAAGTATCTGGTACGTTTTTCATTAGTGTTGAAAGTAGGCAGTGGACTTTGGACTGTTCAATGGAGCCATGTGAGTATGTGACACGCCATCTTTAAAGTTCCATTTTTTAAA]

[+] EMBL CB649879             [GCGTTCCTCTCCTTCCTCTCCTCCTCCCCGCCGCACCACACCGCGCCCTCATCCTCCGTCTCCTTCCTGGCAGCCCGTGTGCTGCCCGCCTCCCTCAGGGCCGCTGCCGCGGGGTCCCCAACTTCCGCCTCCCGCTCCCGGGGCCGAGGTGTCGCGGCCGTCGTCGCTCAGCTCCCCACCGCGAATCCAGAGGTGGCTTCTGGGGAGAAGAAGATCCGGTGGTCATCACGAGCGGTGAGGTCATTTGCAATGGCGGAGCTGGAGGCTCGGAAGATGAGGTACCCAACCACTGGCACTGAAGGACTCCTCATGGGCATCCTTGTCGAGGGAACTAGTGATGCAGCAAAACTTTTGCGTGCTAATGGAATTACGCTGCTCAAAGTGCGCGAGGAGGCAGCAAATGTGCTTGGGAAATCAGAAATGTTCTACTTTAGTCCTATGCACCCACCATTGACTGAAGCTGCACAACGAGCGCTTGATTGGGCTATCAATGAAAAACTGAAATCAGGTGAAGATGGAGAAGTAACCGCCAATCATCTGCTCCTGGGGATATGGTCAGATAAAGAGTCAGCTGGTCATAAAGTATTGGCTTCCCTTGGTTTTGATGATGAGAGAGCCAATTCACTGGCCAAAACGGCTGGTGAAGAGGCTGCTATGAGTCCTAGATAGCAAAAGGAGCCTTATAGTTTACTACTGAACTTCCCTGTGATGCAATGTGCTTGCGTTTGGAACCTCAAGTAACTTCTTGGCGACTCCAGTATCATGG                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AK100847             [     CCTCTCCTTCCTCTCCTCCTCCCCGCCGCACCACACCGCGCCCTCATCCTCCGTCTCCTTCCTGGCAGCCCGTGTGCTGCCCGCCTCCCTCAGGGCCGCTGCCGCGGGGTCCCCAACTTCCGCCTCCCGCTCCCGGGGCCGAGGTGTCGCGGCCGTCGTCGCTCAGCTCCCCACCGCGAATCCAGAGGTGGCTTCTGGGGAGAAGAAGATCCGGTGGTCATCACGAGCGGTGAGGTCATTTGCAATGGCGGAGCTGGAGGCTCGGAAGATGAGGTACCCAACCACTGGCACTGAAGGACTCCTCATGGGCATCCTTGTCGAGGGAACTAGTGATGCAGCAAAACTTTTGCGTGCTAATGGAATTACGCTGCTCAAAGTGCGCGAGGAGGCAGCAAATGTGCTTGGGAAATCAGAAATGTTCTACTTTAGTCCTATGCACCCACCATTGACTGAAGCTGCACAACGAGCGCTTGATTGGGCTATCAATGAAAAACTGAAATCAGGTGAAGATGGAGAAGTAACCGCCAATCATCTGCTCCTGGGGATATGGTCAGATAAAGAGTCAGCTGGTCATAAAGTATTGGCTTCCCTTGGTTTTGATGATGAGAGAGCCAATTCACTGGCCAAAACGGCTGGTGAAGAGGCTGCTATGAGTCCTAGATAGCAAAAGGAGCCTTATAGTTTACTACTGAACTTCCCTGTGATGCAATGTGCTTGCGTTTGGAACCTCAAGTAACTTCTTGGCGACTCCAGTATCATGGCCCACGCATTAAGTTAACTTGAAGAGATTGCTTCTACAAGTTTTAGGGCTTTATTAAGATTGTTAGACTGAATGAAATATGTCAGACTCCCCTATTGCCCATACCTGTAAAAGC AGTGCAATGTATTTTCAAAATGAGCATTT CTGTTGCTTGCTCAGCTGGATTGGTGCAATTCTATTAAAAG ATCC TTTTGAAAGATAAAGATTTTGAACG                                                                                                                                                 ]
[+] EMBL CB682651             [     CCTCTCCTTCCTCTCCTCCTCCCCGCCGCACCACACCGCGCCCTCATCCTCCGTCTCCTTCCTGGCAGCCCGTGTGCTGCCCGCCTCCCTCAGGGCCGCTGCCGCGGGGTCCCCAACTTCCGCCTCCCGCTCCCGGGGCCGAGGTGTCGCGGCCGGCGTCGCTCAGCTCCCCACCGCGAATCCAGAGGTGGCTTCTGGGGAGAAGAAGATCCGGTGGTCATCACGAGCGGTGAGGTCATTTGCAATGGCGGAGCTGGAGGCTCGGAAGATGAGGTACCCAACCACTGGCACTGAAGGACTCCTCATGGGCATCCTTGTCGAGGGAACTAGGGATGCAGCAAAACTTTTGCGTGCTAATGGAATTACGCTGCTCAAAGTGCGCGAGGAGGCAGCAAATGTGCTTGGGAAATCAGAAATGGTCTACTTTAGTCCTATGCACCCACCATTGACTGAAGCTGCACAACGAGCGCTTGATTGGGCTATCAATGAGAAACTGAAATCAGGTGAAGATGGAGAAGTAACCGCCAATCATCTGCTCCTGGGGATATGGTCAGATAAAGAGTCAGCTGGTCATAAAGTATTGGCTTCCCTTGGTTTTGATGATGAGAGAGCCAATTCACTGGCCAAAACGGCTGGTGAAGAGGCTGCTATGAGTCCTAGATAGCAAAAGGAGCCTTATAGTTTACTACT                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CB649921             [                                                                                                                GGTCCCCAACTTCCGCCTCCCGCTCCCGGGGACGAGGTGTCGCGGCCGTCGTCGCTCATCTCCCCACCGCGAATCCAGAGGTGGCTTCTGGGGAGAAGAAGATCCGGTGGTCATCACGAGCGGTGAGGTCATTTGCAATGGCGGAGCTGGAGGCTCGGAAGATGAAGTACCCAACCACTGGCACTGAAGGACTCCTCATGGGCATCCTTGTCGAGGGAACTAGTGATGCAACAAAACTTTTGCGTGCTAATGGAATTACGCTGCTCAAAGTGCGCGAGGAGGCAGCAAATGTGCTTGGGAAATCAGAAATGTTCTACTTTAGTCCTATGCACCCACCATTGACTGAAGCTGCACAACGAGCGCTTGATTGGGCTATCAATGAAAAACTGAAATCACGTGAAAATGGAGAAGTAACCGCCAATCATCTGCTCCTGGGGATATGGTCAGATAAAGAGTCAGCTGGTCATAAAGTATTGGCTTCCCTTGGTTTTGATGATGAGAGAGCCAATTCACTGGCCAAAACGGCTGGTGAAGAGGCTGCTATGAGTCCTATATAGCAGAAGGAGCCTTATAGTTTACTACTGAACTTCCCTGTGA                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CB649880             [                                                                                                                                                                                                                       CCGGTGGTCATCACGAGCGGTGAGGTCATTTGCAATGGCGGAGCTGGAGGCTCGGAAGATGAGGTACCCAACCACTGGCACTGAAGGACTCCTCATGGGCATCCTTGTCGAGGGAACTAGTGATGCAGCAAAACTTTTGCGTGCTAATGGAATTACGCTGCTCAAAGTGCGCGAGGAGGCAGCAAATGTGCTTGGGAAATCAGAAATGTTCTACTTTAGTCCTATGCACCCACCATTGACTGAAGCTGCACAACGAGCGCTTGATTGGGCTATCAATGAAAAACTGAAATCAGGTGAAGATGGAGAAGTAACCGCCAATCATCTGCTCCTGGGGATATGGTCAGATAAAGAGTCAGCTGGTCATAAAGTATTGGCTTCCCTTGGTTTTGATGATGAGAGAGCCAATTCACTGGCCAAAACGGCTGGTGAAGAGGCTGCTATGAGTCTTAGATAGCAAAAGGAGCCTTATAGTTTACTACTGAACTTCCCTGTGATGCAATGTGCTTGCGTTTGGAACCTCAAGTAACTTCTTGGCGACTCCAGTATCATGGCCCACGCATTAAGTTAACTTGAAGAGATTGCTTCTACAAGTTTTAGGGCTTTATTAAGATTGTTAGACTGAATGCAATATGTCAGACTCCCCTATTGCCCATACCTGTAAAAGC AGTGCAATGTATTTTCAAAATGAGCATTT CTGTTGCTTGCTCAGCTGGATTGGTGCAATTCTATTAAAAG ATCC TTTTGAAAGATAAAGATTTTGAACGGGTTCAGAG                                                                                                                                        ]
[-] EMBL CB682652             [                                                                                                                                                                                                                       CCGGTGGTCATCACGAGCGGTGAGGTCATTTGCAATGGCGGAGCTGGAGGCTCGGAAGATGAGGTACCCAACCACTGGCACTGAAGGACTCCTCATGGGCATCCTTGTCGAGGGAACTAGTGATGCAGCAAAACTTTTGCGTGCTAATGGAATTACGCTGCTCAAAGTGCGCGAGGAGGCAGCAAATGTGCTTGGGAAATCAGAAATGTTCTACTTTAGTCCTATGCACCCACCATTGACTGAAGCTGCACAACGAGCGCTTGATTGGGCTATCAATGAAAAACTGAAATCAGGTGAAGATGGAGAAGTAACCGCCAATCATCTGCTCCTGGGGATATGGTCAGATAAAGAGTCAGCTGGTCATAAAGTATTGGCTTCCCTTGGTTTTGATGATGAGAGAGCCAATTCACTGGCCAAAACGGCTGGTGAAGAGGCTGCTATGAGTCCTAGATAGCAAAAGGAGCCTTATAGTTTACTACTGAACTTCCCTGTGATGCAATGTGCTTGCGTTTGGAACCTCAAGTAACTTCTTGGCGACTCCAGTATCATGGCCCACGCATTAAGTTAACTTGAAGAGATTGCTTCTACAAGTTTTAGGGCTTTATTAAGATTGTTAGACTGAATGCAATATGTCAGACTCCCCTATTGCCCATACCTGTAAAAGC AGTGCAATGTATTTTCAAAATGAGCATTT CTGTTGCTTGCTCAGCTGGATTGGTGCAATTCTATTAAAAG ATCC TTTTGAAAGATAAAGATTTTGAACGGG                                                                                                                                               ]
[-] EMBL CB649922             [                                                                                                                                                                                                                                                                                                                              CTTGTCGAGGGAACTAGTGATGCAGCAAAACTTTTGCGTGCTAATGGAATTACGCTGCTCAAAGTGTGTGAGGAGGCAGCAAATGTGCTTGGGAAATCAGAAATGTTCTACTTTAGTCCTATGCACCCACCATTGTCTGAAGCTGCACAACGAGCGCTTGATTGGGCTATCAATGAAAAACTGAAATCAGGTGAAGATGGAGAAGTAACCGCCAATCATCTGCTCCTGGGGATATGGTCAGATAAAGAGTCAGCTGGTCATAAAGTATTGGCTTCCCTTGGTTTTGATGATGAGAGAGCCAATTCACTGGCCAAAACGGCTGGTGAAGAGGGTGCTATGAGTCCTAGATAGCAAAAGGAGCCTTATAGTTTACTTCTGAACTTCCCTGTGATGCAATGTGATTGTGTTTGGAACCTCAAGTAACTTTTTGGGGACTCCAGTATCATGGCCCACGCATTAAGTTAACTTGAAGAGATTGCTTCTACAAGTTTTAGGGCTTTATTAAGATTGTTAGACTGAATGCAATATGTCAGACTCCCCTATTGCCCATACCTGTAAAAGC AGTGCAATGTATTTTCAAAATGAGCATTT CTGTTGCTTGCTCAGCTGGATTGGTGCAATTCTATTAAAAG ATCC TTTTGAAAGATAAAGATTTTGAACGGGTTCAGAG                                                                                                                                        ]
[-] EMBL CB685039             [                                                                                                                                                                                                                                                                                                                                                                                    CTGCTCAAAGTGCGCGAGGAGGCAGCAAATGTGCTTGGGAAATCAGAAATGTTCTACTTTAGTCCTATGCACCCACCATTGACTGAAGCTGCACAACGAGCGCTTGATTGGGCTATCAATGAAAAACTGAAATCAGGTGAAGATGGAGAAGTAACCGCCAATCATCTGCTCCTGGGGATATGGTCAGATAAAGAGTCAGCTGGTCATAAAGTATTGGCTTCCCTTGGTTTTGATGATGAGAGAGCCAATTCACTGGCCAAAACGGCTGGTGAAGAGGCTGCTATGAGTCCTAGATAGCAAAAGGAGCCTTATAGTTTACTACTGAACTTCCCTGTGATGCAATGTGCTTGCGTTTGGAACCTCAAGTAACTTCTTGGCGACTCCAGTATCATGGCCCACGCATTAAGTTAACTTGAAGAGATTGCTTCTACAAGTTTTAGGGCTTTATTAAGATTGTTAGACTGAATGCAATATGTCAGACTCCCCTATTGCCCATACCTGTAAAAGC AGTGCAATGTATTTTCAAAATGAGCATTT CTGTTGCTTGCTCAGCTGGATTGGTGCAATTCTATTAAAAG ATCC TTTTGAAAGATAAAGATTTTGAACGGGTTCAGAGCTAATGTTTACTAGCATTCCATGGAAAGTATCTGGTACGTTTTTCATTAGTGTTGAAAGTAGGCAGTGGACTTTGGACTGTTCAATGGAGCCATGTGAGTATGTGACACGCCATCTTTAAAGTTCCATTTTTTAAA]
[+] EMBL AU198265             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                TGGGGATATGGTCAGATAAAGAGTCAGCTGGTCATAAAGTATTGGCTTCCCTTGGTTTTGATGATGAGAGAGCCAATTCACTGGCCAAAACGGCTGGTGAAGAGGCTGCTATGAGTCCTAGATAGCAAAAGGAGCCTTATAGTTTACTACTGAACTTCCCTGTGATGCAATGTGCTTGCGTTTGGAACCTCAAGTAACTTCTTGGCGACTCCAGTATCATGGCCCACGCATTAAGTTAACTTGAAGAGATTGCTTCTACAAGTTTTAGGGCTTTATTAAGATTGTTAGACTGAATGCAATATGTCAGACTCCCCTATTGCCCATACCTGTAAAAGCAAGTGCAATGTATTTTCAAAATGAGCATTT CTGTTGCTTGCTCAGCTGGATTGGTGCAATTCTATTAAAAG ATCC TTTTGAAAGATAAAaaaaaaa                                                                                                                                                     ]
[+] EMBL OSR09441A            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    CCTAGATAGCAAAAGGAGCCTTATAGTTTACTACTGAACTTCCCTGTGATGCAATGTGCTTGCGTTTGGAACCTCAAGTAACTTCTTGGCGACTCCAGTATCATGGCCCACGCATTAAGTTAACTTGAAGAGATTGCTTCTACAAGTTTTAGGGCTTTATTAAGATTGTTAGACTGAATGCAATATGTCAGACTCCCCTATTGCCCATACCTGTAAAAGC AGTGCAATGTATTTTCAAAATGNGCATTTCCTGTTGCTTGCTCAGCTGGATTGGTGCAATTCTATTAAAAGCATCCTTTTTGAAAGNTAAAaaaa                                                                                                                                                        ]
[+] EMBL AU164655             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    CCTAGATAGCAAAAGGAGCCTTATAGTTTACTACTGAACTTCCCTGTGATGCAATGTGCTTGCGTTTGGAACCTCAAGTAACTTCTTGGCGACTCCAGTATCATGGCCCACGCATTAAGTTAACTTGAAGAGATTGCTTCTACAAGTTTTAGGGCTTTATTAAGATTGTTAGACTGAATGCAATATGTCAGACTCCCCTATTGCCCATACCTGTAAAAGC AGTGCAATGTATTTTCAAAATGAGCATTT CTGTTGCTTGCTCAGCTGGATTGGTGCAATTCTATTAAAAG ATCC TTTTGAAAGATAAAaaaaa                                                                                                                                                       ]
[-] EMBL CB685038             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             GCTTTATTAAAATTGTTAGAGTGAATGCAATAGGTCAGACTCCCCTATTGCCCATACCTGTAAAAGC AGTGCAATGTATTTTCAAAATGAGCATTT TTTTTACTTGCTCAGCTGGATTGGTGCAATTCTATTAAAAG ATCC TTTTGAAATATAAAGATTTTGAACGGGGTCAGAGCTAATGTTTACTATCATTCCATGGAAAGTTTTTGGTACGTTTTTCATTAGAGTTGAAAATAGGC                                                                        ]


>consensus_13419#0 GCGTTCCTCTCCTTCCTCTCCTCCTCCCCGCCGCACCACACCGCGCCCTCATCCTCCGTC TCCTTCCTGGCAGCCCGTGTGCTGCCCGCCTCCCTCAGGGCCGCTGCCGCGGGGTCCCCA ACTTCCGCCTCCCGCTCCCGGGGCCGAGGTGTCGCGGCCGTCGTCGCTCAGCTCCCCACC GCGAATCCAGAGGTGGCTTCTGGGGAGAAGAAGATCCGGTGGTCATCACGAGCGGTGAGG TCATTTGCAATGGCGGAGCTGGAGGCTCGGAAGATGAGGTACCCAACCACTGGCACTGAA GGACTCCTCATGGGCATCCTTGTCGAGGGAACTAGTGATGCAGCAAAACTTTTGCGTGCT AATGGAATTACGCTGCTCAAAGTGCGCGAGGAGGCAGCAAATGTGCTTGGGAAATCAGAA ATGTTCTACTTTAGTCCTATGCACCCACCATTGACTGAAGCTGCACAACGAGCGCTTGAT TGGGCTATCAATGAAAAACTGAAATCAGGTGAAGATGGAGAAGTAACCGCCAATCATCTG CTCCTGGGGATATGGTCAGATAAAGAGTCAGCTGGTCATAAAGTATTGGCTTCCCTTGGT TTTGATGATGAGAGAGCCAATTCACTGGCCAAAACGGCTGGTGAAGAGGCTGCTATGAGT CCTAGATAGCAAAAGGAGCCTTATAGTTTACTACTGAACTTCCCTGTGATGCAATGTGCT TGCGTTTGGAACCTCAAGTAACTTCTTGGCGACTCCAGTATCATGGCCCACGCATTAAGT TAACTTGAAGAGATTGCTTCTACAAGTTTTAGGGCTTTATTAAGATTGTTAGACTGAATG CAATATGTCAGACTCCCCTATTGCCCATACCTGTAAAAGCAGTGCAATGTATTTTCAAAA TGAGCATTTCTGTTGCTTGCTCAGCTGGATTGGTGCAATTCTATTAAAAGATCCTTTTGA AAGATAAAGATTTTGAACGGGTTCAGAGCTAATGTTTACTAGCATTCCATGGAAAGTATC TGGTACGTTTTTCATTAGTGTTGAAAGTAGGCAGTGGACTTTGGACTGTTCAATGGAGCC ATGTGAGTATGTGACACGCCATCTTTAAAGTTCCATTTTTTAAA



consensusID : consensus_13419#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 258
fasta sequence
                              [AAATNAGGTGAAGATGGAGANGTAACCGCCAATNANCTGCNCCTGGGGATATGGTCANATAAANNGTCAGCTGGTCATAAAGTATTGGNTTCCCTTGGTTTTAATGATGAGAGAGCCAATTCACTGGCCAAANCGGCTGGTGAAGAGGCTGCTATNNGTCCTAGATAGCAAAAGGNGCCTTATAGTTTNCTACTGACCTTCCCTGTNATGCAATGTNCTTGCNTTTGGAACCTCANGTAACTTCTTGGCGACTCCAGT]

[+] EMBL OSS16527A            [AAATNAGGTGAAGATGGAGANGTAACCGCCAATNANCTGCNCCTGGGGATATGGTCANATAAANNGTCAGCTGGTCATAAAGTATTGGNTTCCCTTGGTTTTAATGATGAGAGAGCCAATTCACTGGCCAAANCGGCTGGTGAAGAGGCTGCTATNNGTCCTAGATAGCAAAAGGNGCCTTATAGTTTNCTACTGACCTTCCCTGTNATGCAATGTNCTTGCNTTTGGAACCTCANGTAACTTCTTGGCGACTCCAGT]


>consensus_13419#1 AAATNAGGTGAAGATGGAGANGTAACCGCCAATNANCTGCNCCTGGGGATATGGTCANAT AAANNGTCAGCTGGTCATAAAGTATTGGNTTCCCTTGGTTTTAATGATGAGAGAGCCAAT TCACTGGCCAAANCGGCTGGTGAAGAGGCTGCTATNNGTCCTAGATAGCAAAAGGNGCCT TATAGTTTNCTACTGACCTTCCCTGTNATGCAATGTNCTTGCNTTTGGAACCTCANGTAA CTTCTTGGCGACTCCAGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13419#0      GCGTTCCTCTCCTTCCTCTCCTCCTCCCCGCCGCACCACACCGCGCCCTCATCCTCCGTC 60
consensus_13419#1      ------------------------------------------------------------
                                                                                   

consensus_13419#0      TCCTTCCTGGCAGCCCGTGTGCTGCCCGCCTCCCTCAGGGCCGCTGCCGCGGGGTCCCCA 120
consensus_13419#1      ------------------------------------------------------------
                                                                                   

consensus_13419#0      ACTTCCGCCTCCCGCTCCCGGGGCCGAGGTGTCGCGGCCGTCGTCGCTCAGCTCCCCACC 180
consensus_13419#1      ------------------------------------------------------------
                                                                                   

consensus_13419#0      GCGAATCCAGAGGTGGCTTCTGGGGAGAAGAAGATCCGGTGGTCATCACGAGCGGTGAGG 240
consensus_13419#1      ------------------------------------------------------------
                                                                                   

consensus_13419#0      TCATTTGCAATGGCGGAGCTGGAGGCTCGGAAGATGAGGTACCCAACCACTGGCACTGAA 300
consensus_13419#1      ------------------------------------------------------------
                                                                                   

consensus_13419#0      GGACTCCTCATGGGCATCCTTGTCGAGGGAACTAGTGATGCAGCAAAACTTTTGCGTGCT 360
consensus_13419#1      ------------------------------------------------------------
                                                                                   

consensus_13419#0      AATGGAATTACGCTGCTCAAAGTGCGCGAGGAGGCAGCAAATGTGCTTGGGAAATCAGAA 420
consensus_13419#1      ------------------------------------------------------------
                                                                                   

consensus_13419#0      ATGTTCTACTTTAGTCCTATGCACCCACCATTGACTGAAGCTGCACAACGAGCGCTTGAT 480
consensus_13419#1      ------------------------------------------------------------
                                                                                   

consensus_13419#0      TGGGCTATCAATGAAAAACTGAAATCAGGTGAAGATGGAGAAGTAACCGCCAATCATCTG 540
consensus_13419#1      ---------------------AAATNAGGTGAAGATGGAGANGTAACCGCCAATNANCTG 39
                                            **** *************** ************ * ***

consensus_13419#0      CTCCTGGGGATATGGTCAGATAAAGAGTCAGCTGGTCATAAAGTATTGGCTTCCCTTGGT 600
consensus_13419#1      CNCCTGGGGATATGGTCANATAAANNGTCAGCTGGTCATAAAGTATTGGNTTCCCTTGGT 99
                       * **************** *****  *********************** **********

consensus_13419#0      TTTGATGATGAGAGAGCCAATTCACTGGCCAAAACGGCTGGTGAAGAGGCTGCTATGAGT 660
consensus_13419#1      TTTAATGATGAGAGAGCCAATTCACTGGCCAAANCGGCTGGTGAAGAGGCTGCTATNNGT 159
                       *** ***************************** **********************  **

consensus_13419#0      CCTAGATAGCAAAAGGAGCCTTATAGTTTACTACTGAACTTCCCTGTGATGCAATGTGCT 720
consensus_13419#1      CCTAGATAGCAAAAGGNGCCTTATAGTTTNCTACTGACCTTCCCTGTNATGCAATGTNCT 219
                       **************** ************ ******* ********* ********* **

consensus_13419#0      TGCGTTTGGAACCTCAAGTAACTTCTTGGCGACTCCAGTATCATGGCCCACGCATTAAGT 780
consensus_13419#1      TGCNTTTGGAACCTCANGTAACTTCTTGGCGACTCCAGT--------------------- 258
                       *** ************ **********************                     

consensus_13419#0      TAACTTGAAGAGATTGCTTCTACAAGTTTTAGGGCTTTATTAAGATTGTTAGACTGAATG 840
consensus_13419#1      ------------------------------------------------------------
                                                                                   

consensus_13419#0      CAATATGTCAGACTCCCCTATTGCCCATACCTGTAAAAGCAGTGCAATGTATTTTCAAAA 900
consensus_13419#1      ------------------------------------------------------------
                                                                                   

consensus_13419#0      TGAGCATTTCTGTTGCTTGCTCAGCTGGATTGGTGCAATTCTATTAAAAGATCCTTTTGA 960
consensus_13419#1      ------------------------------------------------------------
                                                                                   

consensus_13419#0      AAGATAAAGATTTTGAACGGGTTCAGAGCTAATGTTTACTAGCATTCCATGGAAAGTATC 1020
consensus_13419#1      ------------------------------------------------------------
                                                                                   

consensus_13419#0      TGGTACGTTTTTCATTAGTGTTGAAAGTAGGCAGTGGACTTTGGACTGTTCAATGGAGCC 1080
consensus_13419#1      ------------------------------------------------------------
                                                                                   

consensus_13419#0      ATGTGAGTATGTGACACGCCATCTTTAAAGTTCCATTTTTTAAA 1124
consensus_13419#1      --------------------------------------------
                                                                   




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)