These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13425#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 635 fasta sequence [TTTTGAGTCTCT-GGTTTTTCCTCTTTTTGTTCTTTCTGCGATGGGCAGACATGAGTGTACATCGAAGGCTCGAACTCGGAAATTATTTTTTATTTGATTATACAA-GAA-TGGATACAGTGTAACTCTACCAGATCATGTATA-GAAGAAAT-G-C-ACATGACTGATGATATCTTCATTTACAAATACCCACCATAT-TGAG-AAAGAGGGTACA-CAACAACTAAAGTGTCTATGCCA-A-TTCCAAAACGTATT-CAATATCTTGCCGAATGCATTCT-TGACAAGCTTAATATATTGTGGAGT-AGTAGATAATTGATTGGCATTTCAT-AGTTTGG-ATGTGG-CA-AGCTTAATAAGATCCTTCCTCAGTATCTTCCCGGA-TGCATTCTTGGG-A-ATGTCCGTCACAAACGCCACCTTTCTAACCTTCT-TGTAAGGCGCAACC-TGTTTTGCCACAAA-CTCCAT-CA-CCTCG-CGCTCTGACAAGTTGCTTCCTTTCTT-CCT-CACTATATAGGCCATCGGGAACTGGCCGACCTCCCTATCAGG-AAACGGTATAACGGCAACATCCGTAACCTCTGGGTGCGTCAACAAAAGAGCTTCCAGTTCTTGCGGAGGGCACCGTGGTAACCTTTGTATTTGATCAAACTTCCTTG] [-] EMBL BI796737 [TTTTGAGTCTCT GGTTTTTCCTCTTTTTGTTCTTTCTGCGATGGGCAGACATGAGTGTACATCGAAGGCTCGAACTCGGAAATTATTTTTGATTTGATTATACAA GAA TGGATACAG GTAACTCTACCAGATCATGTATACGAAGAAAT G CGACATGATTGATGATATCTTCATTTACAAATACCCACCATATGTGAG AAAGAGGGTACA CAA AACTAAAGTGTCTATGCCA AGTTCCAAAACGTATT CAATATCTTGCCGAATGCATTCT TGACAAGCTTAATATATTGTGGAGT AGTAGATAATTGATTGG ATTTCAT AGTTAGG ATGTGG CA AGCTTAATAAGATCCTTCCTCAGTATCTTCCCGGA TGCATTCTTGGG A ATGTCCGTCACAAACGCCACCTTTCTAACCTTC TGTAAGGCGCAACCGTG TTTGCCACAAAGCTCCAT CAGCCTCGACGCTCTGACAAGTTGGTTCCT ] [+] EMBL CB626022 [ GAGTATCTCTGTTTTTCCTCTTTTTTTTCTTTCTGCCATGGGCAGACATGAGTGTACATCGAAGGCTCGAACTCGGAAATTATTTTTTATTTGATTATACAA GAA TGGATACAGTGTAACTCTACCAGATCATGTATA GAAGAAAT G C ACATGACTGATGATATCTTCATTTACAAATACCCACCATAT TGAG AACGAGGGTACA CAACAACTAAAGTGTCTATGCCA A TTCCAAAACGTATT CAATATCTTGCCGAATGCATTCT TGACAAGCTTAATATATTGTGGAGT AGTAGATAATTGATTGGTATTTCAT AGTTTGG ATGTGG CA AGCTTAATAAGATCCTTCCTCAGTATCTTCCCGGA TGCATTCTTGGG A ATGTCCGTCACAAACGCCACCTTTCTAACCTTCT TGTAAGGCGCAACC TGTTTTGCCACAAA CTCCAT CA CCTCG CGCTCTGACAAGTTGCTTCCTTTCTT CCT CACTATATAGGCCATCGGGAACTGGCCGACCTCCCTATCAGG AAACGGTATAACGGCAACATCCGTAACCTCTGGGTGTGTCAACAAAAGAGCTTCCAGTTC ] [+] EMBL CB638384 [ GCTCGAACTCGGAAA TATTTTTTATTTGATTATACAA GAA TGGATACAGTGTAACTCTACCAGATCATGTATA GAAGAAAT G C ACATGACTGATGATATCTTCATTTACAAATACCCACCATAT TGAG AAAGAGGGTACA CAACAACTAAAGTGTCTATGCCA A TTCCAAAACGTATT CAATATCTTGCCGAATGCATTCT TGACAAGCTTAATATATTGTGGAGT AGTAGATAATTGATTGGCATTTCAT AGTTTGG ATGTGG CA AGCTTAATAAGATCCTTCCTCAGTATCTTCCCGGA TGCATTCTTGGG A ATGTCCGTCACAAACGCCACCTTTCTAACCTTCT TGTAAGGCGCAACC TGTTTTGCCACAAA CTCCAT CA CCTCG CGCTCTGACAAGTTGCTTCCTTTCTT CCT CACTATATAGGCCATCGGGAACTGGCCGACCTCCCTATCAGG AAACGGTATAACGGCAACATCCGTAACCTCTGGGTGCGTCAACAAAAGAGCTTCCAGTTC ] [-] EMBL C99232 [ tttttGAACTCGGAAATTATTTTTTATTTGATTATACAA GAA TGGATACAGTGTAACTCTACCAGATCATGTATA GAAGAAAT G C ACATGACTGATGATATCTTCATTTACAAATACCCACCATAT TGAG AAAGAGGGTACA CAACAACTAAAGTGTCTATGCCA A TTCCAAAACGTATT CAATATCTTGCCGAATGCATTCT TGACAAGCTTAATATATTGTGGAGT AGTAGATAATTGATTGGCATTTCAT AGTTTGG ATGTGG CA AGCTTAATAAGATCCTTCCTCAGTATCTTCCCGGA TGCATTCTTGGG A ATGTCCGTCACAAACGCCACCTTTCTAANCTTCT TGTAAGGCGCAACC TGTTTTGCCACAAA CTCCAT CA CCTCG CGCTCTGACAAGTTGCTTCCTTNCTT CCT CACTATATAGGCCATCGGGAACTGGCCGACCTCCCNATC ] [-] EMBL BM421737 [ ttttTCGGAAATTATTTTTTA TTGNTTNTACAA GAA TGGATACAG GTAACTCTACCAGATCATGTATA GAAGAAAT GCC ACATGACTGATGATATCTTCATTTACAAATACCCACCATA TGAG AAAGAGGGTACA CAACAACTAAAGTGTCTATGCCA A TTCCAAAACGTATT CAATATCTTGCCGAATGCATTCT TGACAAGCTTAATATATTGTGGAGT AGTAGATAATTGATGGGCATTTCAT AG TTGG ATGTGG CA AGCTTAATAAGATCCTTCCTCAGTATCTTCCCGGAGTGCATTCTTGGG A ATGTCCGTCACAAACGCCACCTTTCTAACCTTCT TGTAAGG GCAACC TGTTTTG CACAAA CTCCAT CA CCTCG CGCTCTGACAAGTTGCTTCCTTTCTT CCT CACTATATAGGCCATCGGGAACTGG CGACCTCCCTATCAGG AAACGGTATAACGG AACATCCGTAACCTCTGGGTGCGTCAACAAAAGAGCTTCCAGTTCTTGCGGAGGGCACCGTGGTAACCTTTGTATTTGATCAAACTTCCTTG] [+] EMBL CB622423 [ TCGGAAATTATTTTTTATTTGATTATACAA GAA TGGATACAGTGTAACTCTACCAGATCATGTATA GAAGAAAT G C ACATGACTGATGATATCTTCATTTACAAATACCCACCATAT TGAG AACGAGGGTACA CAACAACTAAAGTGTCTATGCCA A TTCCAAAACGTATT CAATATCTTGCCGAATGCATTCT TGACAAGCTTAATATATTGTGGAGT AGTAGATAATTGATTGGTATTTCAT AGTTTGG ATGTGG CA AGCTTAATAAGATCCTTCCTCAGTATCTTCCCGGA TGCATTCTTGGG A ATGTCCGTCACAAACGCCACCTTTCTAACCTTCT TGTAAGGCGCAACC TGTTTTGCCACAAA CTCCAT CA CCTCG CGCTCTGACAAGTTGCTTCCTTTCTT CCT CACTATATAGGCCATCGGGAACTGGCCGACCTCCCTATCAGG AAACGGTATAACGGCAACATCCGTAACCTCTGGGTGTGTCAACAAAAGAGCTTCCAGTTC ] [-] EMBL BM421848 [ tTCGGAAA TATTTTTTA TTGATTATACAAGGAANTGGATACAGGGTAACTCTACCAGATCATGTATA GAAGAAATGG C ACATGACTGATGATATCTTCATTTACAAATACCCACCATA TGAG AAAGAGGGTACA CAACAACTAAAGTGTCTATGCCA A TTCCAAAACGTATT CAATATCTTGCCGAATGCATTCTGTGACA ] [+] EMBL CB676699 [ TATTTTTTATTTGATTATCCCT TAA GGGATACAGTGTAACTCTACCAGATCATGTATA GAAGAAAT G C ACATGACTGATGATATCTTCATTTCCAAATACCCACCATAT TGAG AAAGAGGGTACA CAACAACTAAAGTGTCTATGCCA A TTCCAAAACGTATT CAATATCTTGCCGAATGCATTCT TGACAAGCTTAATATATTGTGGAGT AGTAGATAATTGATTGGCATTTCAT AGTTTGG ATGTGG CA AGCTTAATAAGATCCTTCCTCAGTATCTTCCCGGA TGCATTCTTGGG A ATGTCCGTCACAAACGCCACCTTTCTAACCTTCT TGTAAGGCGCAACC TGTTTTGCCACAAA CTCCAT CA CCTCG CGCTCTGACAAGTTGCTTCCTTTCTT CCT CACTATATAGGCCATCGGGAACTGGCCGACCTCCCTATCAGG AAACGGTATAACGGCAACATCCGTAACCTCTGGGTGCGTCAACAAAAGAGCTTCCAGTTC ] [+] EMBL CB000964 [ TTTATTTGATTATACAA GAA TGGATACAGTGTAACTCTACCAGATCATGTATA GAAGAAAT G C ACATGACTGATGATATCTTCATTTACAAATACCCACCATAT TGAG AAAGAGGGTACA CAACAACTAAAGTGTCTATGCCA A TTCCAAAACGTATT CAATATCTTGCCGAATGCATTCT TGACAAGCTTAATATATTGTGGAGT AGTAGATAATTGATTGGCATTTCAT AGTTTGG ATGTGG CA AGCTTAATAAGATCCTTCCTCAGTATCTTCCCGGA TGCATTCTTGGG A ATGTCCGTCACAAACGCCACCTTTCTAACCTTCT TGTAAGGCGCAACC TGTTTTGCCACAAA CTCCAT CA CCTCG CGCTCTGACAAGTTGCTTCCTTTCTT CCT CACTATATAGGC ] [+] EMBL CA998788 [ TTTATTTGATTATACAA GAA TGGATACAGTGTAACTCTACCAGATCATGTATA GAAGAAAT G C ACATGACTGATGATATCTTCATTTACAAATACCCACCATAT TGAG AAAGAGGGTACA CAACAACTAAAGTGTCTATGCCA A TTCCAAAACGTATT CAATATCTTGCCGAATGCATTCT TGACAAGCTTAATATATTGTGGAGT AGTAGATAATTGATTGGCATTTCAT AGTTTGG ATGTGG CA AGCTTAATAAGATCCTTCCTCAGTATCTTCCCGGA TGCATTCTTGGG A ATGTCCGTCACAAACGCCACCTTTCTAACCTTCT TGTAAGGCGCAACC TGTTTTGCCACAAA CTCCAT CA CCTCG CGCTCTGACAAGTTGCTTCCTTTCTT CCT CACTATATAGGCCATCGGGAACTGGCCGACCTCCCTATCAGG AAACGGTATAACGGCAACATCCGTAACCTCTGGGTGCGTCAACAAAAGAGCTTCCAGTTC ] [-] EMBL BI809560 [ GATATCTTCATTTACAAATA CCACCATAT TGAGCAAAGAGGGTACACCAACAACTAAAGTGTCTATGCCACA TTCCAAAACGTATTCCAATATCTTGCCGAATGCATTCT TGACAAGCTTAATATATTGTGGAGTCAGTAGATAATTGATTGGCATTTCATCAGTCTGGCATGTGGCCACAGCTTAATAAGATCCTTCCTCAGTATCTTCCCGGA TGCATTCTTGGGCACATGTCCGTCACAAACGCCACCTTTCTAACCTTCTATGTAAGG GCCACG TGTTTTTGCACAAA CTCCATACA ACTCG CGCTCTGACAAGTTGCTTCCTTTCTTCCCTCCACTATATAGGCCATCGGGAACTGG CGA CTCCCTATCAGGCAAACGGTATAACGGCACCATCCGTAA CTCTG ] consensusID : consensus_13425#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 452 fasta sequence [TTTTTTTTTTAACTCGGAAATTATTTTTTATTTGATTATACAAGAAGGGATACAGGGTAACTCTACCAGATCAGGTATAGAAGAAATGCACATGACTGATGATATCTTCATTTACAAATACCCACCATATGAGAAAGAGGGTACACAACAACTAAAGTGTCTATGCCAATTCCAAAACGTATTCAATATCTGCCGAATGCATTCTTGACAAGCTTAATATATGGTGGAGTAGTAGATAATGATGGCATTTCATAGTTGGGATGTGGCAAGCTTAATAAGATCCTTCCTCAGTATCTTCCCGGATGCATTCTGTGGGAATGTCCGTCACAAACGCCACCTTTCTAACCCTTCTGTGTAAGGCGCAACCTGTTTGGCCACAAACTCCATCACCTCGCGCTCTGACAAGTGCTTCCCTTTCTTCCTCACTATATAGGCCATCGGGAACTGGCGAC] [-] EMBL BI808795 [TTTTTTTTTTAACTCGGAAATTATTTTTTATTTGATTATACAAGAAGGGATACAGGGTAACTCTACCAGATCAGGTATAGAAGAAATGCACATGACTGATGATATCTTCATTTACAAATACCCACCATATGAGAAAGAGGGTACACAACAACTAAAGTGTCTATGCCAATTCCAAAACGTATTCAATATCTGCCGAATGCATTCTTGACAAGCTTAATATATGGTGGAGTAGTAGATAATGATGGCATTTCATAGTTGGGATGTGGCAAGCTTAATAAGATCCTTCCTCAGTATCTTCCCGGATGCATTCTGTGGGAATGTCCGTCACAAACGCCACCTTTCTAACCCTTCTGTGTAAGGCGCAACCTGTTTGGCCACAAACTCCATCACCTCGCGCTCTGACAAGTGCTTCCCTTTCTTCCTCACTATATAGGCCATCGGGAACTGGCGAC] consensusID : consensus_13425#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 248 fasta sequence [TTTTTTTTTACTCGGGGGAAATATTTTTTAATTTTGATTATACAAAAGGGAATGGATACAGGGGGTAACTCTACCCAGGATCATGTATAAGAAGAAATGCACATGACTGAAAAATGATATCTTCATTTTTACAAATACCCACCATATGAGAAAGGAGGGTACACAACAAACTAAAGTGTCTATGCCAATTTCCAAAACGTAATTCAATAATCTGCCGGAAGTGCATTCTGGACAAGCTTAAATATATG] [-] EMBL BM418906 [TTTTTTTTTACTCGGGGGAAATATTTTTTAATTTTGATTATACAAAAGGGAATGGATACAGGGGGTAACTCTACCCAGGATCATGTATAAGAAGAAATGCACATGACTGAAAAATGATATCTTCATTTTTACAAATACCCACCATATGAGAAAGGAGGGTACACAACAAACTAAAGTGTCTATGCCAATTTCCAAAACGTAATTCAATAATCTGCCGGAAGTGCATTCTGGACAAGCTTAAATATATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13425#0 TTTTGAGTCTCTGGTTTTTCCTCTTTTTGTTCTTTCTGCGATGGGCAGACATGAGTGTAC 60 consensus_13425#1 ------------------------------------------------------------ consensus_13425#2 ------------------------------------------------------------ consensus_13425#0 ATCGAAGGCTCGAACTCGGAAATTATTTTTTA--TTTGATTATACAA----GAATGGATA 114 consensus_13425#1 --TTTTTTTTTTAACTCGGAAATTATTTTTTA--TTTGATTATACAA----GAAGGGATA 52 consensus_13425#2 --TTTTTTTTTACTCGGGGGAAATATTTTTTAATTTTGATTATACAAAAGGGAATGGATA 58 * * ** ** ********* ************* *** ***** consensus_13425#0 CAGTG--TAACTCTACC--AGATCATGTATA-GAAGAAATGCACATGACTGA----TGAT 165 consensus_13425#1 CAGGG--TAACTCTACC--AGATCAGGTATA-GAAGAAATGCACATGACTGA----TGAT 103 consensus_13425#2 CAGGGGGTAACTCTACCCAGGATCATGTATAAGAAGAAATGCACATGACTGAAAAATGAT 118 *** * ********** ***** ***** ******************** **** consensus_13425#0 ATCTTCATTT--ACAAATACCCACCATATTGAGAAAGAGGGTACACAACAA-CTAAAGTG 222 consensus_13425#1 ATCTTCATTT--ACAAATACCCACCATAT-GAGAAAGAGGGTACACAACAA-CTAAAGTG 159 consensus_13425#2 ATCTTCATTTTTACAAATACCCACCATATGAGAAAGGAGGGTACACAACAAACTAAAGTG 178 ********** ***************** ** *************** ******** consensus_13425#0 TCTATGCCAATT-CCAAAACGTA-TTCAATATCTTGCCGAA--TGCATTCTTGACAAGCT 278 consensus_13425#1 TCTATGCCAATT-CCAAAACGTA-TTCAATATCT-GCCGAA--TGCATTCTTGACAAGCT 214 consensus_13425#2 TCTATGCCAATTTCCAAAACGTAATTCAATAATCTGCCGGAAGTGCATTCTGGACAAGCT 238 ************ ********** ******* **** * ******** ******** consensus_13425#0 TAA-TATATTGTGGAGTAGTAGATAATTGATTGGCATTTCATAGTTTGGATGTGGCAAGC 337 consensus_13425#1 TAA-TATATGGTGGAGTAGTAGATAAT--GATGGCATTTCATAGTTGGGATGTGGCAAGC 271 consensus_13425#2 TAAATATATG-------------------------------------------------- 248 *** ***** consensus_13425#0 TTAATAAGATCCTTCCTCAGTATCTTCCCGGATGCATTCT-TGGGAATGTCCGTCACAAA 396 consensus_13425#1 TTAATAAGATCCTTCCTCAGTATCTTCCCGGATGCATTCTGTGGGAATGTCCGTCACAAA 331 consensus_13425#2 ------------------------------------------------------------ consensus_13425#0 CGCCACCTTTCTAACCTTCTTGT--AAGGCGCAACCTGTTTTGCCACAAACTCCATCACC 454 consensus_13425#1 CGCCACCTTTCTAACCCTTCTGTGTAAGGCGCAACCTGTTTGGCCACAAACTCCATCACC 391 consensus_13425#2 ------------------------------------------------------------ consensus_13425#0 TCGCGCTCTGACAAGTTGCTTCCTTTCTTCCTCACTATATAGGCCATCGGGAACTGGCCG 514 consensus_13425#1 TCGCGCTCTGACAAGTGCTTCCCTTTCTTCCTCACTATATAGGCCATCGGGAACTGGC-G 450 consensus_13425#2 ------------------------------------------------------------ consensus_13425#0 ACCTCCCTATCAGGAAACGGTATAACGGCAACATCCGTAACCTCTGGGTGCGTCAACAAA 574 consensus_13425#1 AC---------------------------------------------------------- 452 consensus_13425#2 ------------------------------------------------------------ consensus_13425#0 AGAGCTTCCAGTTCTTGCGGAGGGCACCGTGGTAACCTTTGTATTTGATCAAACTTCCTT 634 consensus_13425#1 ------------------------------------------------------------ consensus_13425#2 ------------------------------------------------------------ consensus_13425#0 G 635 consensus_13425#1 - consensus_13425#2 - |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||