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Oryza sativa
cluster # 13427 cluster # 13427       Sequences # 13       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13427#0 length = 1308 sequences # 12  
consensus_13427#1 length = 336 sequences # 1  

consensusID : consensus_13427#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 12
consensus length = 1308
fasta sequence
                              [TACTACCACCACCTCCCCAAAATCCCAATCGAATCGAAATCGAATCGAGTCGAGTCGCCGCCG-GAGCCGGAGACGGAGGCGGCAGCGGCGCAGCGGTAATGGCGAGCCTCACCCTGCCGCCGGCGCCCACCAACCCTCGCCAGGACGCCATCGACCTCCACAAGGCCTTCAAAGGGTTTGGCTGTGATAGTACAACAGTTATAAATATACTTACTCATCGTGACTCGATGCAACGCGCGCTCATTCAACAGGAATACAGGACTATGTATTCTGAGGATCTCTCTCGCCGTATATCATCTGAACTCAGTGGACACCACAAGAAAGCAATGCTGCTATGGATTCTTGATCCTGCTGGACGAGATGCAACTGTTTTGAGAGAAGCTCTGAGTGGTGATACTATTGACCTGAGAGCAGCCACTGAGATAATATGTTCCAGGACACCATCGCAGCTGCAAATAATGAAACAGACTTATCATGCAAAATTTGGTACTTATCTTGAGCACGACATTGGTCAGCGCACATCAGGCGACCATCAGAAGCTCTTGCTTGCTTATGTGGGGATTCCACGCTATGAAGGTCCTGAGGTTGATCCTACTATAGTGACACACGATGCAAAGGACCTCTATAAAGCTGGTGAGAAAAGGCTGGGCACTGATGAGAAGACC-TTC-ATCCGCATTTTCACTGAACGCAGCTGGGCACACATGGCATCTGTTGCCTCTGCTTACCATCATATGTATGATCGGTCACTGGAGAAGGTTGTGAAGAGCGAAACATCTGGAAACTTTGAACTTGCTCTGCTAACTATCCTCAGATGCGCTGAGAATCCAGCCAAGTATTTTGCAAAGGTCTTGC-GGAAGTCCATGAAAGGTATGGGCACTGATGATAGTACACTTATAAGGGTTGTAGTAACAAGGACTGAGATCGACATGCAATATAT-CAAGGCTGAGTACTACA-A-GA-AATA-CAAAAAATCATTAGCTGAAGCTATCCATTCCGAGACCTCAGGAAATTATCGAACATTCCTCCTTTCTCTAGTTGGTAGCCATTAGGCTACATTTCGTCGACCCTGTGGCACTTGACGTTCCATGACTATCCTAAATGCAGTGGTTCTACCTGGAAACTGTAAAATTTCGCCATCATTGTGCTCTCTATTCGTGTGTGCTTGCTTAAAAATGTGTGTATATATATAACCTGGGCATTAAATAGTTGGTGCTTAATATGGTTTGGTGGTTCCATCTGACAAGTCACTCGTTACTCGGTGCATTTATTCGAATAAGTGATGGTATTTGGTCAAAAAAAAAGTTAAAAGGA]

[+] EMBL AK061821             [TACTACCACCACCTCCCCAAAATCCCAATCGAATCGAAATCGAATCGAGTCGAGTCGCCGCCG GAGCCGGAGACGGAGGCGGCAGCGGCGCAGCGGTAATGGCGAGCCTCACCCTGCCGCCGGCGCCCACCAACCCTCGCCAGGACGCCATCGACCTCCACAAGGCCTTCAAAGGGTTTGGCTGTGATAGTACAACAGTTATAAATATACTTACTCATCGTGACTCGATGCAACGCGCGCTCATTCAACAGGAATACAGGACTATGTATTCTGAGGATCTCTCTCGCCGTATATCATCTGAACTCAGTGGACACCACAAGAAAGCAATGCTGCTATGGATTCTTGATCCTGCTGGACGAGATGCAACTGTTTTGAGAGAAGCTCTGAGTGGTGATACTATTGACCTGAGAGCAGCCACTGAGATAATATGTTCCAGGACACCATCGCAGCTGCAAATAATGAAACAGACTTATCATGCAAAATTTGGTACTTATCTTGAGCACGACATTGGTCAGCGCACATCAGGCGACCATCAGAAGCTCTTGCTTGCTTATGTGGGGATTCCACGCTATGAAGGTCCTGAGGTTGATCCTACTATAGTGACACACGATGCAAAGGACCTCTATAAAGCTGGTGAGAAAAGGCTGGGCACTGATGAGAAGACC TTC ATCCGCATTTTCACTGAACGCAGCTGGGCACACATGGCATCTGTTGCCTCTGCTTACCATCATATGTATGATCGGTCACTGGAGAAGGTTGTGAAGAGCGAAACATCTGGAAACTTTGAACTTGCTCTGCTAACTATCCTCAGATGCGCTGAGAATCCAGCCAAGTATTTTGCAAAGGTCTTGC GGAAGTCCATGAAAGGTATGGGCACTGATGATAGTACACTTATAAGGGTTGTAGTAACAAGGACTGAGATCGACATGCAATATAT CAAGGCTGAGTACTACA A GA AATA CAAAAAATCATTAGCTGAAGCTATCCATTCCGAGACCTCAGGAAATTATCGAACATTCCTCCTTTCTCTAGTTGGTAGCCATTAGGCTACATTTCGTCGACCCTGTGGCACTTGACGTTCCATGACTATCCTAAATGCAGTGGTTCTACCTGGAAACTGTAAAATTTCGCCATCATTGTGCTCTCTATTCGTGTGTGCTTGCTTAAAAATGTGTGTATATATATAACCTGGGCATTAAATAGTTGGTGCTTAATATGGTTTGGTGGTTCCATCTGACAAGTCACTCGTTACTCGGTGCATTTATTCGAATAAGTGATG                             ]
[+] EMBL AK099102             [  CTACCACCACCTCCCCAAAATCCCAATCGAATCGAAATCGAATCGAGTCGAGTCGCCGCCG GAGCCGGAGACGGAGGCGGCAGCGGCGCAGCGGTAATGGCGAGCCTCACCCTGCCGCCGGCGCCCACCAACCCTCGCCAGGACGCCATCGACCTCCACAAGGCCTTCAAAGGGTTTGGCTGTGATAGTACAACAGTTATAAATATACTTACTCATCGTGACTCGATGCAACGCGCGCTCATTCAACAGGAATACAGGACTATGTATTCTGAGGATCTCTCTCGCCGTATATCATCTGAACTCAGTGGACACCACAAGAAAGCAATGCTGCTATGGATTCTTGATCCTGCTGGACGAGATGCAACTGTTTTGAGAGAAGCTCTGAGTGGTGATACTATTGACCTGAGAGCAGCCACTGAGATAATATGTTCCAGGACACCATCGCAGCTGCAAATAATGAAACAGACTTATCATGCAAAATTTGGTACTTATCTTGAGCACGACATTGGTCAGCGCACATCAGGCGACCATCAGAAGCTCTTGCTTGCTTATGTGGGGATTCCACGCTATGAAGGTCCTGAGGTTGATCCTACTATAGTGACACACGATGCAAAGGACCTCTATAAAGCTGGTGAGAAAAGGCTGGGCACTGATGAGAAGACC TTC ATCCGCATTTTCACTGAACGCAGCTGGGCACACATGGCATCTGTTGCCTCTGCTTACCATCATATGTATGATCGGTCACTGGAGAAGGTTGTGAAGAGCGAAACATCTGGAAACTTTGAACTTGCTCTGCTAACTATCCTCAGATGCGCTGAGAATCCAGCCAAGTATTTTGCAAAGGTCTTGC GGAAGTCCATGAAAGGTATGGGCACTGATGATAGTACACTTATAAGGGTTGTAGTAACAAGGACTGAGATCGACATGCAATATAT CAAGGCTGAGTACTACA A GA AATA CAAAAAATCATTAGCTGAAGCTATCCATTCCGAGACCTCAGGAAATTATCGAACATTCCTCCTTTCTCTAGTTGGTAGCCATTAGGCTACATTTCGTCGACCCTGTGGCACTTGACGTTCCATGACTATCCTAAATGCAGTGGTTCTACCTGGAAACTGTAAAATTTCGCCATCATTGTGCTCTCTATTCGTGTGTGCTTGCTTAAAAATGTGTGTATATATATAACCTGGGCATTAAATAGTTGGTGCTTAATATGGTTTGGTGGTTCCATCTGACAAGTCACTCGTTACTCGGTGCATTTATTCGAATAAGTGATG                             ]
[+] EMBL CB654216             [                                                        GCCGCCGCGAGCCGGAGACGGAGGCGGCAGCGGCGCAGCGGTAATGGCGAGCCTCACCCTGCCGCCGGCGCCCACCAACCCTCGCCAGGACGCCATCGACCTCCACAAGGCCTTCAAAGGGTTTGGCTGTGATAGTACAACAGTTATAAATATACTTACTCATCGTGACTCGATGCAACGCGCGCTCATTCAACAGGAATACAGGACTATGTATTCTGAGGATCTCTCTCGCCGTATATCATCTGAACTCAGTGGACACCACAAGAAAGCAATGCTGCTATGGATTCTTGATCCTGCTGGACGAGATGCAACTGTTTTGAGAGAAGCTCTGAGTGGTGATACTATTGACCTGAGAGCAGCCACTGAGATAATATGTTCCAGGACACCATCGCAGCTGCAAATAATGAAACAGACTTATCATGCAAAATTTGGTACTTATCTTGAGCACGACATTGGTCAGCGCACATCAGGCGACCATCAGAAGCTCTTGCTTGCTTATGTGGGGATTCCACGCTATGAAGGTCCTGAGGTTGATCCTACTATAGTGACACACGATGCAAAGGACCTCTATAAAGCTGGTGAGAAAAGGCTGGGCACTGATGAGAAGACC TTC ATCCGCATTTTCACTGAACGCAGCTGGGCACACATGGCATCTGTTGCCTCTGCTTACCATCATATGTATGATCGGTCACTGGAGAAGGTTGTGAAGAGCGAAACATCTGGAAACTTTGAACTTGCTCTGCTAACTATCCTCAGATGCGCTGAGAATCCAGCCAAGTATTTTGCAAAGGTCTTGC GGAAGTCCATGAAAGGTATGGGCACTGATG                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CB679364             [                                                                                                                                                                                                                                               GCTCATTCAACAGGAATACAGGACTATGTATTCTGAGGATCTCTCTCGCCGTATATCATCTGAACTCAGTGGACACCACAAGAAAGCAATGCTGCTATGGATTCTTGATCCTGCTGGACGAGATGCAACTGTTTTGAGAGAAGCTCTGAGTGGTGATACTATTGACCTGAGAGCAGCCACTGAGATAATATGTTCCAGGACACCATCGCAGCTGCAAATAATGAAACAGACTTATCATGCAAAATTTGGTACTTATCTTGAGCACGACATTGGTCAGCGCACATCAGGCGACCATCAGAAGCTCTTGCTTGCTTATGTGGGGATTCCACGCTATGAAGGTCCTGAGGTTGATCCTACTATAGTGACACACGATGCAAAGGACCTCTATAAAGCTGGTGAGAAAAGGCTGGGCACTGATGAGAAGACC TTC ATCCGCATTTTCACTGAACGCAGCTGGGCACACATGGCATCTGTTGCCTCTGCTTACCATCATATGTATGATCGGTCACTGGAGAAGGTTGTGAAGAGCGAAACATCTGGAAACTTTGAACTTGCTCTGCTAACTATCCTCAGATGCGCTGAGAATCCAGCCAAGTATTTTGCAAAGGTCTTGC GGAAGTCCATGAAAGGTATGGGCACTGATGATAGTACACTTATAAGGGTTGTAGTAACAAGGACTGAGATCGACATGCAATATAT CAAGGCTGAGTACTACA A GA AATA CAAAAAATCATTAGCTGAAGCTATCCATTCCGAGACCTCA                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL OSS1380A             [                                                                                                                                                                                                                                                                                                                                                                                                                           GCAGCCACTGAGATAATATGTTCCAGGACACCATCGCAGCTGCAAATAATGAAACAGACTTATCATGCAAAATTTGGTACTTATCTTGAGCACGACATTGGTCAGCGCACATCAGGCGACCATCAGAAGCTCTTGCTTGCTTATGTGGGGATTCCACGCTATGAAGGTCCTGAGGTTGATCCTACTATAGTGACACACGATGCAAAGGACCTCTATAAAGCTGGTGAGAAAAGGCTGGGCACTGATGAGAAGACCTTTCAATCCGCATTTTCACTGAACGCAGCTGGGCACACATGGCATCTGTTGCCTCTGCTTACCATCATATGTATGATCGGTCACTGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CA755985             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                       AATAATGAAACAGACTTATCATGCAAAATTTGGTACTTATCTTGAGCACGACATTGGTCAGCGCACATCAGGCGACCATCAGAAGCTCTTGCTTGCTTATGTGGGGATTCCACGCTATGAAGGTCCTGAGGTTGATCCTACTATAGTGACACACGATGCANAGGACCTCTATAAAGCTGGTGAGAAAAGGCTGGGCACTGATGAGAAGACC TTC ATCCGCATTTTCACTGAACGCAGCTGGGCACACATGGCATCTGTTGCCTCTGCTTACCATCATATGTATGATCGGTCACTGGAGAAGGTTGTGAAGAGCGAAACATCTGGAAACTTTGAACTTGCTCTGCTAACTATCCTCAGATGCGCTGAGAATCCAGCCAAGTATTTTGCANAGGTCTTGC GGAAGTCCATGAAAGGTATGGGCACTGATGATAGTACACTTATNAGGGTTGTAGTAACAAGGACTGAGATCGACATGCNATATAT CAAGGCTGAGTACTACN A GA AATA CAAAAAATCATTAGCTGAAGCTATCCATTCCGAGACCTCANGANATTATCGAACATTCCT CTTTCTCTAGTTGGTAGCC                                                                                                                                                                                                                                                                           ]
[+] EMBL C27470               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          CTTATCTTGAGCACGACATTGGTCAGCGCACATCAGGCGACCATCAGAAGCTCTTGCTTGCTTATGTGGGGATTCCACGCTATGAAGGTCCTGAGGTTGATCCTACTATAGTGACACACGATGCAAAGGACCTCTATAAAGCTGGTGAGAAAAGGCTGGGCACTGATGAGAAGACC TTC ATCCGCATTTTCACTGAACGCAGCTGGGCACACATGGCATCTGTTGCCTCTGCTTACCATCATATGTATGATCGGTCACTGGAGAAGGTTGTGAAGAGCGAAACATCTGGAAACTTTGAACTTGCTCTGCTAACTATCCTCAGATGCGCTGAGAATCCAGCCAAGTNTTTTNCAAAGGTCTTNCGGGAAGTCCATGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CB654217             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GCACATCAGGCGACCATCAGAAGCTCTTGCTTGCTTATGTGGGGATTCCACGCTATGAAGGTCCTGAGGTTGATCCTACTATAGTGACACACGATGCAAAGGACCTCTATAAAGCTGGTGAGAAAAGGCTGGGCACTGATGAGAAGACC TTC ATCCGCATTTTCACTGAACGCAGCTGGGCACACATGGCATCTGTTGCCTCTGCTTACCATCATATGTATGATCGGTCACTGGAGAAGGTTGTGAAGAGCGAAACATCTGGAAACTTTGAACTTGCTCTGCTAACTATCCTCAGATGCGCTGAGAATCCAGCCAAGTATTTTGCAAAGGTCTTGC GGAAGTCCATGAAAGGTATGGGCACTGATGATAGTACACTTATAAGGGTTGTAGTAACAAGGACTGAGATCGACATGCAATATAT CAAGGCTGAGTACTACA A GA AATA CAAAAAATCATTAGCTGAAGCTATCCATTCCGAGACCTCAGGAAATTATCGAACATTCCTCCTTTCTCTAGTTGGTAGCCATTAGGCTACATTTCGTCGACCCTGTGGCACTTGACGTTCCATGACTATCCTAAATGCAGTGGTTCTACCTGGAAACTGTAAAATTTCGCCATCATTGTGCTCTCTATTCGTG                                                                                                                                                          ]
[-] EMBL CB655408             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    CCACGCTATGAAGGTCGTGAGGTTGATCTTACTATAGTGACACACGATGCAAAGGACCTCTATAAAGCTGGTGAGAAAAGGCTGGGCACTGATGAGAAGACC TTC ATCCGCATTTTCACTGAACGCAGCTGGGCACACATGGCATCTGTTGCCTCTGCTTACCATCATATGTATGATCGGTCACTGGAGAAGGTTGTGAAGAGCGAAACATCTGGAAACTTTGAACTTGCTCTGCTAACTATCCTCAGATGCGCTGAGAATCCAGCCAAGTATTTTGCAAAGGTCTTGC GGAAGTCCATGAAAGGTATGGGCACTGATGATAGTACACTTATAAGGGTTGTAGTAACAAGGACTGAGATCGACATGCAATATAT CAAGGCTGAGTACTACA A GA AATA CAAAAAATCATTAGCTGAAGCTATCCATTCCGAGACCTCAGGAAATTATCGAACATTCCTCCTTTCTTTAGTTGGTAGCCATTAGGCTACATTTCGTCGACCCTGTGGCACTTGACGTTCCATGACTATCCTAAATGCAGTGGTTCTACCTGGAAACTGTAAAATTTCGCCATCATTGTGCTCTCTATTCGTGTGTGCTTGCTTAAAAATGTGTGTATATATATAACCTGGGCATTAAATAGTTGGTGCTTAATATGGTTTGGTGGTTCCATCTGACAAGTCACTCGTTACTCGAAGCATTTATTCGAATAAGTGATGGTATTTGGTCACATAAAAAG         ]
[-] EMBL CB679365             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CCTACTATAGTGACACACGATGCAAAGGACCTCTATAAAGCTGGTGAGAAAAGGCTGGGCACTGATGAGAAGACC TTC ATCCGCATTTTCACTGAACGCAGCTGGGCACACATGGCATCTGTTGCCTCTGCTTACCATCATATGTATGATCGGTCACTGGAGAAGGTTGTGAAGAGCGAAACATCTGGAAACTTTGAACTTGCTCTGCTAACTATCCTCAGATGCGCTGAGAATCCAGCCAAGTATTTTGCAAAGGTCTTGC GGAAGTCCATGAAAGGTATGGGCACTGATGATAGTACACTTATAAGGGTTGTAGTAACAAGGACTGAGATCGACATGCAATATAT CAAGGCTGAGTACTACA A GA AATA CAAAAAATCATTAGCTGAAGCTATCCATTCCGAGACCTCAGGAAATTATCGAACATTCCTCCTTTCTCTAGTTGGTAGCCATTAGGCTACATTTCGTCGACCCTGTGGCACTTGACGTTCCATGACTATCCTAAATGCAGTGGTTTTACCTGGAAACTGTAAAATTTCGCCATCATTGTGCTCTCTATTCGTGTGTGCTTGCTTAAAAATGTGTGTATATATATAACCTGGGCATTAAATAGTTGGTGCTTAATATGGTTTGGTGGTTCCATCTGACAAGTCACTCGTTACTCGGTGCATTTAGTGGAATAAGTGATGGTATTTGGTCAAAAAAAAACTTAAAAGGA]
[+] EMBL BI805884             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ATCGACATGCAATATATGCAAGGCTGAGTACTACATATGATAATACCAATAAATCATTAGCTGAAGCTATCCATTCCGAGACCTCAGGAAATTATCGAACATTCCTCCTTTCTCTAGTTGGTAGCCATTAGGCTACATTTCGTCGACCCTGTGGCACTGGACGTTCCATGACTATCCTAAATGCAGTGGTTCTACCTGGAAACTGTAAAATTTCGCCATCATTGTGCTCTCTATTCGTGTGTGCTTGCTTAAAAATGTGTGTATATATATAACCTGGGCATTAAATAGTTGGTGCTTAATATGGTTTGGTGGTTCCATCTGAC AGTCACTCGTTACTCGGTGCATTTATTCGAATAAGTGATGGTATTTGGTCCAAAAAAAAa         ]
[+] EMBL AU100825             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ATCATTAGCTGAAGCTATCCATTCCGAGACCTCAGGAAATTATCGAACATTCCTCCTTTCTCTAGTTGGTAGCCATTAGGCTACATTTCGTCGACCCTGTGGCACTTGACGTTCCATGACTATCCTAAATGCAGTGGTTCTACCTGGAAACTGTAAAATTTCGCCATCATTGTGCTCTCTATTCGTGTGTGCTTGCTTAAAAATGTGTGTATATATATAACCTGGGCATTAAATAGTTGGTGCTTAATATGGTTTGGTGGTTCCATCTGACAAaaa                                                                 ]


>consensus_13427#0 TACTACCACCACCTCCCCAAAATCCCAATCGAATCGAAATCGAATCGAGTCGAGTCGCCG CCGGAGCCGGAGACGGAGGCGGCAGCGGCGCAGCGGTAATGGCGAGCCTCACCCTGCCGC CGGCGCCCACCAACCCTCGCCAGGACGCCATCGACCTCCACAAGGCCTTCAAAGGGTTTG GCTGTGATAGTACAACAGTTATAAATATACTTACTCATCGTGACTCGATGCAACGCGCGC TCATTCAACAGGAATACAGGACTATGTATTCTGAGGATCTCTCTCGCCGTATATCATCTG AACTCAGTGGACACCACAAGAAAGCAATGCTGCTATGGATTCTTGATCCTGCTGGACGAG ATGCAACTGTTTTGAGAGAAGCTCTGAGTGGTGATACTATTGACCTGAGAGCAGCCACTG AGATAATATGTTCCAGGACACCATCGCAGCTGCAAATAATGAAACAGACTTATCATGCAA AATTTGGTACTTATCTTGAGCACGACATTGGTCAGCGCACATCAGGCGACCATCAGAAGC TCTTGCTTGCTTATGTGGGGATTCCACGCTATGAAGGTCCTGAGGTTGATCCTACTATAG TGACACACGATGCAAAGGACCTCTATAAAGCTGGTGAGAAAAGGCTGGGCACTGATGAGA AGACCTTCATCCGCATTTTCACTGAACGCAGCTGGGCACACATGGCATCTGTTGCCTCTG CTTACCATCATATGTATGATCGGTCACTGGAGAAGGTTGTGAAGAGCGAAACATCTGGAA ACTTTGAACTTGCTCTGCTAACTATCCTCAGATGCGCTGAGAATCCAGCCAAGTATTTTG CAAAGGTCTTGCGGAAGTCCATGAAAGGTATGGGCACTGATGATAGTACACTTATAAGGG TTGTAGTAACAAGGACTGAGATCGACATGCAATATATCAAGGCTGAGTACTACAAGAAAT ACAAAAAATCATTAGCTGAAGCTATCCATTCCGAGACCTCAGGAAATTATCGAACATTCC TCCTTTCTCTAGTTGGTAGCCATTAGGCTACATTTCGTCGACCCTGTGGCACTTGACGTT CCATGACTATCCTAAATGCAGTGGTTCTACCTGGAAACTGTAAAATTTCGCCATCATTGT GCTCTCTATTCGTGTGTGCTTGCTTAAAAATGTGTGTATATATATAACCTGGGCATTAAA TAGTTGGTGCTTAATATGGTTTGGTGGTTCCATCTGACAAGTCACTCGTTACTCGGTGCA TTTATTCGAATAAGTGATGGTATTTGGTCAAAAAAAAAGTTAAAAGGA



consensusID : consensus_13427#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 336
fasta sequence
                              [CTCCACGGAGAAATTATTTCGGACAACTTTCCTCCCTCTTTCTTCTATGGTTGGTGAAGCCCACTTAAGGGCTAACACACTTTCGTCTGAGACCCTCGGTGGCACACTTGAACGTTTCCACTGAGCTATTCCTAAAAGCACGTGGTTTTAACCTGGGAAACTGTAAAAAGTCGCCCACTCCTTGTGCTCTTTAATTTGTGTGTGTGCTTGCCTTAAAAATGTGTGTATAAATATAACCTGGGCCATTAAATAGTTGGTGCTTAATAATGGTTTGGTGGTTCCCTCTGCACCAGTCACTCGTTTACTCGGTGCATTTATTCGAATAAAGTGATGGTT]

[-] EMBL CB965337             [CTCCACGGAGAAATTATTTCGGACAACTTTCCTCCCTCTTTCTTCTATGGTTGGTGAAGCCCACTTAAGGGCTAACACACTTTCGTCTGAGACCCTCGGTGGCACACTTGAACGTTTCCACTGAGCTATTCCTAAAAGCACGTGGTTTTAACCTGGGAAACTGTAAAAAGTCGCCCACTCCTTGTGCTCTTTAATTTGTGTGTGTGCTTGCCTTAAAAATGTGTGTATAAATATAACCTGGGCCATTAAATAGTTGGTGCTTAATAATGGTTTGGTGGTTCCCTCTGCACCAGTCACTCGTTTACTCGGTGCATTTATTCGAATAAAGTGATGGTT]


>consensus_13427#1 CTCCACGGAGAAATTATTTCGGACAACTTTCCTCCCTCTTTCTTCTATGGTTGGTGAAGC CCACTTAAGGGCTAACACACTTTCGTCTGAGACCCTCGGTGGCACACTTGAACGTTTCCA CTGAGCTATTCCTAAAAGCACGTGGTTTTAACCTGGGAAACTGTAAAAAGTCGCCCACTC CTTGTGCTCTTTAATTTGTGTGTGTGCTTGCCTTAAAAATGTGTGTATAAATATAACCTG GGCCATTAAATAGTTGGTGCTTAATAATGGTTTGGTGGTTCCCTCTGCACCAGTCACTCG TTTACTCGGTGCATTTATTCGAATAAAGTGATGGTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13427#0      TACTACCACCACCTCCCCAAAATCCCAATCGAATCGAAATCGAATCGAGTCGAGTCGCCG 60
consensus_13427#1      ------------------------------------------------------------
                                                                                   

consensus_13427#0      CCGGAGCCGGAGACGGAGGCGGCAGCGGCGCAGCGGTAATGGCGAGCCTCACCCTGCCGC 120
consensus_13427#1      ------------------------------------------------------------
                                                                                   

consensus_13427#0      CGGCGCCCACCAACCCTCGCCAGGACGCCATCGACCTCCACAAGGCCTTCAAAGGGTTTG 180
consensus_13427#1      ------------------------------------------------------------
                                                                                   

consensus_13427#0      GCTGTGATAGTACAACAGTTATAAATATACTTACTCATCGTGACTCGATGCAACGCGCGC 240
consensus_13427#1      ------------------------------------------------------------
                                                                                   

consensus_13427#0      TCATTCAACAGGAATACAGGACTATGTATTCTGAGGATCTCTCTCGCCGTATATCATCTG 300
consensus_13427#1      ------------------------------------------------------------
                                                                                   

consensus_13427#0      AACTCAGTGGACACCACAAGAAAGCAATGCTGCTATGGATTCTTGATCCTGCTGGACGAG 360
consensus_13427#1      ------------------------------------------------------------
                                                                                   

consensus_13427#0      ATGCAACTGTTTTGAGAGAAGCTCTGAGTGGTGATACTATTGACCTGAGAGCAGCCACTG 420
consensus_13427#1      ------------------------------------------------------------
                                                                                   

consensus_13427#0      AGATAATATGTTCCAGGACACCATCGCAGCTGCAAATAATGAAACAGACTTATCATGCAA 480
consensus_13427#1      ------------------------------------------------------------
                                                                                   

consensus_13427#0      AATTTGGTACTTATCTTGAGCACGACATTGGTCAGCGCACATCAGGCGACCATCAGAAGC 540
consensus_13427#1      ------------------------------------------------------------
                                                                                   

consensus_13427#0      TCTTGCTTGCTTATGTGGGGATTCCACGCTATGAAGGTCCTGAGGTTGATCCTACTATAG 600
consensus_13427#1      ------------------------------------------------------------
                                                                                   

consensus_13427#0      TGACACACGATGCAAAGGACCTCTATAAAGCTGGTGAGAAAAGGCTGGGCACTGATGAGA 660
consensus_13427#1      ------------------------------------------------------------
                                                                                   

consensus_13427#0      AGACCTTCATCCGCATTTTCACTGAACGCAGCTGGGCACACATGGCATCTGTTGCCTCTG 720
consensus_13427#1      ------------------------------------------------------------
                                                                                   

consensus_13427#0      CTTACCATCATATGTATGATCGGTCACTGGAGAAGGTTGTGAAGAGCGAAACATCTGGAA 780
consensus_13427#1      ------------------------------------------------------------
                                                                                   

consensus_13427#0      ACTTTGAACTTGCTCTGCTAACTATCCTCAGATGCGCTGAGAATCCAGCCAAGTATTTTG 840
consensus_13427#1      ------------------------------------------------------------
                                                                                   

consensus_13427#0      CAAAGGTCTTGCGGAAGTCCATGAAAGGTATGGGCACTGATGATAGTACACTTATAAGGG 900
consensus_13427#1      ------------------------------------------------------------
                                                                                   

consensus_13427#0      TTGTAGTAACAAGGACTGAGATCGACATGCAATATATCAAGGCTGAGTACTACAAGAAAT 960
consensus_13427#1      -------------------------------------------------CTCCACGGAG- 10
                                                                        ** ** * *  

consensus_13427#0      ACAAAAAATCATTAGCTGAAGCTATCCATTCCGAGACCTCAGGAAATTATCGAACATTCC 1020
consensus_13427#1      -----AAATTATTTCGGACAACTTTCCTCCCTCTTTCTTCTATGGTTGGTGAAGC----- 60
                            **** ***      * ** ***   *     * **      *  *  * *     

consensus_13427#0      TCCTTTCTCTAGTTGGTAGCCATTAGGCTACATTTCGTCGACCCTGTGGCACTTGA-CGT 1079
consensus_13427#1      -CCACTTAAGGGCTAACACACTTTCGTCTG-AGACCCTCGG---TGGCACACTTGAACGT 115
                        **  *     * *   *  * ** * **  *   * ***    **   ******* ***

consensus_13427#0      TCCA--TGA-CTAT-CCTAAATGCA-GTGGTTCTACCT--GGAAACTGTAAAATTTCGCC 1132
consensus_13427#1      TTCCACTGAGCTATTCCTAAAAGCACGTGGTTTTAACCTGGGAAACTGTAAAAAGTCGCC 175
                       * *   *** **** ****** *** ****** ** *   *************  *****

consensus_13427#0      A--TCATTGTGCTCTCTATTC---GTGTGTGCTTGC-TTAAAAATGTGTGTATATATATA 1186
consensus_13427#1      CACTCCTTGTGCTCTTTAATTTGTGTGTGTGCTTGCCTTAAAAATGTGTGTATAAATATA 235
                          ** ********* ** *    ************ ***************** *****

consensus_13427#0      ACCTGGGC-ATTAAATAGTTGGTGCTTAATA-TGGTTTGGTGGTTCCATCTG-ACAAGTC 1243
consensus_13427#1      ACCTGGGCCATTAAATAGTTGGTGCTTAATAATGGTTTGGTGGTTCCCTCTGCACCAGTC 295
                       ******** ********************** *************** **** ** ****

consensus_13427#0      ACTCGTT-ACTCGGTGCATTTATTCGAATAA-GTGATGGTATTTGGTCAAAAAAAAAGTT 1301
consensus_13427#1      ACTCGTTTACTCGGTGCATTTATTCGAATAAAGTGATGGTT------------------- 336
                       ******* *********************** ********                    

consensus_13427#0      AAAAGGA 1308
consensus_13427#1      -------
                              




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)