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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13430#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1748 fasta sequence
[ACTCCACACCACCACACACTCCCCTTCCCTTCCTTCTCCGGTCTCCTCCCTCTCTCGTCGTCGTCGTCGTCGCCGTCGCCGGCTCGCCGCGTTCTCCTCCGCCGCCGCTGCTGAGCCGGGATGGCCGCGCGTAGCCCCTACTTCGTCCCCGAGAGCGAGGGGATCCGGGCCGGGGAGTCGCCGGCCGCGGCGCTCCGCAGGATCCTCGCGTCGCCGGGGGCGCACCAGGCCCCCTGCTGCTTCGACGCGCTCGGCGCCCGCCTCATCCAGCGCGCGGGGTTCCCGATCTGCTTCATGGGCGGTTTCTGTGTTTCTGCCGCACGACTTGGATTGCCAGATGCTGGTCTCATCTCATATGGAGAAATGGTAGATCAAGGGCGTCTGATCACTGAAGCTGTATCACTCCCAGTTATCGGCGATGGTGATAATGGCTATGGAAATGCTATGAGCATTAAGAGAACCGTAAAAGGGTATATTAATGCTGGTTTTGCTGGAATCATGCTCGAAGATCAGGTGGCACCAAAAGCATGTGGACATACTGAAGGAAGGAAAGTTATCTCAAGGGAGGATGCTATCATGCACATAAAA-GCTGCCGTAGATG-CTAGGAAA-GAGAGTGGTTCTGACATTGTTATCATTGCAAGGTCAGACTCTCGTCAAGCTATCTCTATTGATGAAGCGCTATGGAGGGTACAGGCTTTTGCCGATGCTGGAGCAGATGTTCTATTCATTGATGCTCTTGCTTCAATAGAAGAGATGAAAGCATTTTGTGCGGTTTCACCTAAAGTTCCAAAGATGGCAAACATGCTAGAAGGTGGTGGTAAAACTCCCATATTGAGCCCTGCTGAACTTCAGGAGATTGGTTTTAGCCTCGTAGTCTACCCATTGTCCCTGATTGGGGTATCAATGCTCGCAATGGAGGATGCTCTGATTGCGATAAAAAGTACTGGTGCACCCCGACC-TGGTAGCTTGCCATCTTTTCAGGAGATCAAGGATACTCTAGGGTTTAACCGATATTACAAAGAAGAAAAGCAATATGCAACAGTCCAGCAAGCCCAGCCATTATCCACAAATATTGTACTTCGATTAAAGATCACAGAAAAAAGTGGAACGCAGAAGATAAATGAAGGGATACCTGCTGGAATCCTAGAGAAGATATCAAAAGCTATTCCAGGCTTGGCTGGTGTCAATTTGACGGAAATACTTCAGGGTGCAGATCAGTCCCAGAAAGGAAAATTGCTGCTTG-ATCGTGAGGATGCAACTGGCGACAGGATCCAGGTGTCCATCGAGTGATCAATGCCTACATACATTGCCTAGAAGCATGGATGGCCAGTAATGTAGGGCAAATCGCCTTCAATATTGAAGCAAACGATTTTCCAAGTTGTAATGGTAGCCGTTTAGCGTAGTACCTTGAAGTGTTACTTCTGCGAGTTGGGTTTTCCTCTTTGCGTTGCCTTGTGGTGTTAATAATCCTGGATTCCTGTGTTGATTCAAATAAAAG-AAACCTATCATCAGGGGCTTTAGAATGTTCATTTCTGCAGACCTACGGCAACAAATGCCAGGGATCATGACAGCAATTTTCATCAGAATCAGTCATGTACAAAGATAAATGGCAATGCCATATTGTCATGTACTCTCAACATGAACCAACTGATCATCACTGACTGCAACCATGCATGTATCAAGAAACCCAGCATAGAACAAATTTTGGGCATGTGTGCCATTCTGTATAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK067193 [ACTCCACACCACCACACACTCCCCTTCCCTTCCTTCTCCGGTCTCCTCCCTCTCTCGTCGTCGTCGTCGTCGCCGTCGCCGGCTCGCCGCGTTCTCCTCCGCCGCCGCTGCTGAGCCGGGATGGCCGCGCGTAGCCCCTACTTCGTCCCCGAGAGCGAGGGGATCCGGGCCGGGGAGTCGCCGGCCGCGGCGCTCCGCAGGATCCTCGCGTCGCCGGGGGCGCACCAGGCCCCCTGCTGCTTCGACGCGCTCGGCGCCCGCCTCATCCAGCGCGCGGGGTTCCCGATCTGCTTCATGGGCGGTTTCTGTGTTTCTGCCGCACGACTTGGATTGCCAGATGCTGGTCTCATCTCATATGGAGAAATGGTAGATCAAGGGCGTCTGATCACTGAAGCTGTATCACTCCCAGTTATCGGCGATGGTGATAATGGCTATGGAAATGCTATGAGCATTAAGAGAACCGTAAAAGGGTATATTAATGCTGGTTTTGCTGGAATCATGCTCGAAGATCAGGTGGCACCAAAAGCATGTGGACATACTGAAGGAAGGAAAGTTATCTCAAGGGAGGATGCTATCATGCACATAAAA GCTGCCGTAGATG CTAGGAAA GAGAGTGGTTCTGACATTGTTATCATTGCAAGGTCAGACTCTCGTCAAGCTATCTCTATTGATGAAGCGCTATGGAGGGTACAGGCTTTTGCCGATGCTGGAGCAGATGTTCTATTCATTGATGCTCTTGCTTCAATAGAAGAGATGAAAGCATTTTGTGCGGTTTCACCTAAAGTTCCAAAGATGGCAAACATGCTAGAAGGTGGTGGTAAAACTCCCATATTGAGCCCTGCTGAACTTCAGGAGATTGGTTTTAGCCTCGTAGTCTACCCATTGTCCCTGATTGGGGTATCAATGCTCGCAATGGAGGATGCTCTGATTGCGATAAAAAGTACTGGTGCACCCCGACC TGGTAGCTTGCCATCTTTTCAGGAGATCAAGGATACTCTAGGGTTTAACCGATATTACAAAGAAGAAAAGCAATATGCAACAGTCCAGCAAGCCCAGCCATTATCCACAAATATTGTACTTCGATTAAAGATCACAGAAAAAAGTGGAACGCAGAAGATAAATGAAGGGATACCTGCTGGAATCCTAGAGAAGATATCAAAAGCTATTCCAGGCTTGGCTGGTGTCAATTTGACGGAAATACTTCAGGGTGCAGATCAGTCCCAGAAAGGAAAATTGCTGCTTG ATCGTGAGGATGCAACTGGCGACAGGATCCAGGTGTCCATCGAGTGATCAATGCCTACATACATTGCCTAGAAGCATGGATGGCCAGTAATGTAGGGCAAATCGCCTTCAATATTGAAGCAAACGATTTTCCAAGTTGTAATGGTAGCCGTTTAGCGTAGTACCTTGAAGTGTTACTTCTGCGAGTTGGGTTTTCCTCTTTGCGTTGCCTTGTGGTGTTAATAATCCTGGATTCCTGTGTTGATTCAAATAAAAG AAACCTATCATCAGGGGCTTTAGAATGTTCTTTTCTGCAGACCTACGGCAACAAATGCCAGGGATCATGAC ]
[+] EMBL CA755074 [ ACCACACACTCCCCTTCCCTTCCTTCTCCGGTCTCCTCCCTCTCTCGTCGTCGTCGTCGTCGCCGTCGCCGGCTCGCCGCGTTCTCCTCCGCCGCCGCTGCTGAGCCGGGATGGCCGCGCGTAGCCCCTACTTCGTCCCCGAGAGCGAGGGGATCCGGGCCGGGGAGTCGCCGGCCGCGGCGCTCCGCAGGATCCTCGCGTCGCCGGGGGCGCACCAGGCCCCCTGCTGCTTCGACGCGCTCGGCGCCCGCCTCATCCAGCGCGCGGGGTTCCCGATCTGCTTCATGGGCGGTTTCTGTGTTTCTGCCGCACGACTTGGATTGCCAGATGCTGGTCTCATCTCAGATGGAGAAATGGTAGATCAAGGGCGTCTGATCACTGAAGCTGTATCACTCCCAGTTATCGGCGATGGCCATCACGGCTATGGAAATGCTATGAGCATTAAGAGAACCGCAAGAGGGTATATCTATGCTGGTTTTGCTGGAATCATGCTCGAAGATCAGGTGGCACCACAAGCATGTGGAACTACCGAAGGATGGAAAGCCATCTCGTGGGAGGATGCTATCACGCACATAAAAGGCTGCCGTAGATGCCTGGGAAAGGGGAGTGcct ]
[+] EMBL AK104891 [ CTCCTCCCTCTCTCGTCGTCGTCGTCGTCGCCGTCGCCGGCTCGCCGCGTTCTCCTCCGCCGCCGCTGCTGAGCCGGGATGGCCGCGCGTAGCCCCTACTTCGTCCCCGAGAGCGAGGGGATCCGGGCCGGGGAGTCGCCGGCCGCGGCGCTCCGCAGGATCCTCGCGTCGCCGGGGGCGCACCAGGCCCCCTGCTGCTTCGACGCGCTCGGCGCCCGCCTCATCCAGCGCGCGGGGTTCCCGATCTGCTTCATGGGCGGTTTCTGTGTTTCTGCCGCACGACTTGGATTGCCAGATGCTGGTCTCATCTCATATGGAGAAATGGTAGATCAAGGGCGTCTGATCACTGAAGCTGTATCACTCCCAGTTATCGGCGATGGTGATAATGGCTATGGAAATGCTATGAGCATTAAGAGAACCGTAAAAGGGTATATTAATGCTGGTTTTGCTGGAATCATGCTCGAAGATCAGGTGGCACCAAAAGCATGTGGACATACTGAAGGAAGGAAAGTTATCTCAAGGGAGGATGCTATCATGCACATAAAA GCTGCCGTAGATG CTAGGAAA GAGAGTGGTTCTGACATTGTTATCATTGCAAGGTCAGACTCTCGTCAAGCTATCTCTATTGATGAAGCGCTATGGAGGGTACAGGCTTTTGCCGATGCTGGAGCAGATGTTCTATTCATTGATGCTCTTGCTTCAATAGAAGAGATGAAAGCATTTTGTGCGGTTTCACCTAAAGTTCCAAAGATGGCAAACATGCTAGAAGGTGGTGGTAAAACTCCCATATTGAGCCCTGCTGAACTTCAGGAGATTGGTTTTAGCCTCGTAGTCTACCCATTGTCCCTGATTGGGGTATCAATGCTCGCAATGGAGGATGCTCTGATTGCGATAAAAAGTACTGGTGCACCCCGACC TGGTAGCTTGCCATCTTTTCAGGAGATCAAGGATACTCTAGGGTTTAACCGATATTACAAAGAAGAAAAGCAATATGCAACAGTCCAGCAAGCCCAGCCATTATCCACAAATATTGTACTTCGATTAAAGATCACAGAAAAAAGTGGAACGCAGAAGATAAATGAAGGGATACCTGCTGGAATCCTAGAGAAGATATCAAAAGCTATTCCAGGCTTGGCTGGTGTCAATTTGACGGAAATACTTCAGGGTGCAGATCAGTCCCAGAAAGGAAAATTGCTGCTTG ATCGTGAGGATGCAACTGGCGACAGGATCCAGGTGTCCATCGAGTGATCAATGCCTACATACATTGCCTAGAAGCATGGATGGCCAGTAATGTAGGGCAAATCGCCTTCAATATTGAAGCAAACGATTTTCCAAGTTGTAATGGTAGCCGTTTAGCGTAGTACCTTGAAGTGTTACTTCTGCGAGTTGGGTTTTCCTCTTTGCGTTGCCTTGTGGTGTTAATAATCCTGGATTCCTGTGTTGATTCAAATAAAAG AAACCTATCATCA ]
[+] EMBL CB675496 [ CCTCCCTCTCTCGTCGTCGTCGTCGTCGCCGTCGCCGGCTCGCCGCGTTCTCCTCCGCCGCCGCTGCTGAGCCGGGATGGCCGCGCGTAGCCCCTACTTCGTCCCCGAGAGCGAGGGGATCCGGGCCGGGGAGTCGCCGGCCGCGGCGCTCCGCAGGATCCTCGCGTCGCCGGGGGCGCACCAGGCCCCCTGCTGCTTCGACGCGCTCGGCGCCCGCCTCATCCAGCGCGCGGGGTTCCCGATCTGCTTCATGGGCGGTTTCTGTGTTTCTGCCGCACGACTTGGATTGCCAGATGCTGGTCTCATCTCATATGGAGAAATGGTAGATCAAGGGCGTCTGATCACTGAAGCTGTATCACTCCCAGTTATCGGCGATGGTGATAATGGCTATGGAAATGCTATGAGCATTAAGAGAACCGTAAAAGGGTATATTAATGCTGGTTTTGCTGGAATCATGCTCGAAGATCAGGTGGCACCAAAAGCATGTGGACATACTGAAGGAAGGAAAGTTATCTCAAGGGAGGATGCTATCATGCACATAAAA GCTGCCGTAGATG CTAGGAAA GAGAGTGGTTCTGACATTGTTATCATTGCAAGGTCAGACTCTCGTCAAGCTATCTCTATTGATGAAGCGCTATGGAGGGTACAGGCTTTTGCCGATGCTGGAGCAGATGTTCTATTCATTGATGCTCTTGCTTCAATAGAAGAGATGANAGCATTTTGTGCGGTTTCACCTAAAGTTCCAAAGATGGCAAACATGCTAGAAGGTGGTGGTAAAACTCCCATATTGAGCC ]
[+] EMBL CB682810 [ TCCCTCTCTCGTCGTCGTCGTCGTCGCCGTCGCCGGCTCGCCGCGTTCTCCTCCGCCGCCGCTGCTGAGCCGGGATGGCCGCGCGTAGCCCCTACTTCGTCCCCGAGAGCGAGGGGATCCGGGCCGGGGAGTCGCCGGCCGCGGCGCTCCGCAGGATCCTCGCGTCGCCGGGGGCGCACCAGGCCCCCTGCTGCTTCGACGCGCTCGGCGCCCGCCTCATCCAGCGCGCGGGGTTCCCGATCTGCTTCATGGGCGGTTTCTGTGTTTCTGCCGCACGACTTGGATTGCCAGATGCTGGTCTCATCTCATATGGAGAAATGGTAGATCAAGGGCGTCTGATCACTGAAGCTGTATCACTCCCAGTTATCGGCGATGGTGATAATGGCTATGGAAATGCTATGAGCATTAAGAGAACCGTAAAAGGGTATATTAATGCTGGTTTTGCTGGAATCATGCTCGAAGATCAGGTGGCACCAAAAGCATGTGGACATACTGAAGGAAGGAAAGTTATCTCAAGGGAGGATGCTATCATGCACATAAAA GCTGCCGTAGATG CTAGGAAA GAGAGTGGTTCTGACATTGTTATCATTGCAAGGTCAGACTCTCGTCAAGCTATCTCTATTGATGAAGCGCTATGGAGGGTACAGGCTTTTGCCGATGCTGGAGCAGATGTTCTATTCATTGATGCTCTTGCTTCAATAGAAGAGATGAAAGCATTTTGTGCGGTTTCACCTAAAGTTCCAAAGATGGCAAACATGCTAGAAGGTGGTGGTAA ]
[+] EMBL CF303696 [ TTCGACGCGCTCGGCGCCCGCCTCATCCAGCGCGCGGGGTTCCCGATCTGCTTCATGGGCGGTTTCTGTGTTTCTGCCGCACGACTTGGATTGCCAGATGCTGGTCTCATCTCATATGGAGAAATGGTAGATCAAGGGCGTCTGATCACTGAAGCTGTATCACTCCCAGTTATCGGCGATGGTGATAATGGCTATGGAAATGCTATGAGCATTAAGAGAACCGTAAAAGGGTATATTAATGCTGGTTTTGCTGGAATCATGCTCGAAGATCAGGTGGCACCAAAAGCATGTGGACATACTGAAGGAAGGAAAGTTATCTCAAGGGAGGATGCTATCATGCACATAAAA GCTGCCGTAGATG CTAGGAAA GAGAGTGGTTCTGACATTGTTATCATTGCAAGGTCAGACTCTCGTCAAGCTATCTCTATTGATGAAGCGCTATGGAGGGTACAGGCTTTTGCCGATGCTGGAGCAGATGTTCTATTCATTGATGCTCTTGCTTCAATAGAAGAGATGAAAGCATTTTGTGCGGTTTCACCTAAAGTTCCAAAGATGG ]
[-] EMBL CB675497 [ GCTCTTGCTTCAATAGAAGAGATGAAAGCATTTTGTGCGGTTTCACCTAAAGTTCCAAAGATGGCAAACATGCTAGAAGGTGGTGGTAAAACTCCCATATTGAGCCCTGCTGAACTTCAGGAGATTGGTTTTAGCCTCGTAGTCTACCCATTGTCCCTGATTGGGGTATCAATGCTCGCAATGGAGGATGCTCTGATTGCGATAAAAAGTACTGGTGCACCCCGACC TGGTAGCTTGCCATCTTTTCAGGAGATCAAGGATACTCTAGGGTTTAACCGATATTACAAAGAAGAAAAGCAATATGCAACAGTCCAGCAAGCCCAGCCATTATCCACAAATATTGTACTTCGATTAAAGATCACAGAAAAAAGTGGAACGCAGAAGATAAATGAAGGGATACCTGCTGGAATCCTAGAGAAGATATCAAAAGCTATTCCAGGCTTGGCTGGTGTCAATTTGACGGAAATACTTCAGGGTGCAGATCAGTCCCAGAAAGGAAAACTGCTGCTTG ATCGTGAGGATGCAACTGGCGACAGGATCCAGGTGTCCATCGAGTGATCAATGCCTACATACATTGCCTAGAAGCATGGATGGCCAGTAATGTAGGGCAAATCGCCTTCAATATTGAAGCAAACGATTTTCCAAGTTGTAATGGTAGCCGTTTAGCGTAGTACCTTGAAGTGTTACTTCTGCGAGTTGGGTTTTCCTCTTTGCGTTGCCTTGTGGTGTTAATAATCCTGGATTCCTGTGTTGATTCAAATAAAAG AAACCTATCATCAGGGGCTT ]
[-] EMBL CB682811 [ GATGAAAGCATTTTGTGCGGTTTCACCTAAAGTTCCAAAGATGGCAAACATGCTAGAAGGTGGTGGTAAAACTCCCATATTGAGCCCTGCTGAACTTCAGGAGATTGGTTTTAGCCTCGTAGTCTACCCATTGTCCCTGATTGGGGTATCAATGCTCGCAATGGAGGATGCTCTGATTGCGATAAAAAGTACTGGTGCACCCCGACC TGGTAGCTTGCCATCTTTTCAGGAGATCAAGGATACTCTAGGGTTTAACCGATATTACAAAGAAGAAAAGCAATATGCAACAGTCCAGCAAGCCCAGCCATTATCCACAAATATTGTACTTCGATTAAAGATCACAGAAAAAAGTGGAACGCAGAAGATAAATGAAGGGATACCTGCTGGAATCCTAGAGAAGATATCAAAAGCTATTCCAGGCTTGGCTGGTGTCAATTTGACGGAAATACTTCAGGGTGCAGATCAGTCCCAGAAAGGAAAATTGCTGCTTG ATCGTGAGGATGCAACTGGCGACAGGATCCAGGTGTCCATCGAGTGATCAATGCCTACATACATTGCCTAGAAGCATGGATGGCCAGTAATGTAGGGCAAATCGCCTTCAATATTGAAGCAAACGATTTTCCAAGTTGTAATGGTAGCCGTTTAGCGTAGTACCTTGAAGTGTTACTTCTGCGAGTTGGGTTTTCCTCTTTGCGTTGCCTTGTGGTGTTAATAATCCTGGATTCCTGTGTTGATTCAAATAAGGG AAACCTATCATCAGGGGCTTTAGAATGTTCA ]
[+] EMBL BQ909112 [ gGATTGGGGTATCAATGCTCGCAATGGAGGATGCTCTGATTGCGATAAAAAGTACTGGTGCACCCCGACCTTGGTAGCTTGCCATCTTTTCAGGAGATCAAGGATACTCTAGGGTTTAACCGATATTACAAAGAAGAAAAGCAATATGCAACAGTCCAGCAAGCCCAGCCATTATCCAC AATATTGTACTTCGATTAAAGATCACAGAAAAAAGTGGAACGCAGAAGATAAATGAAGGGATACCTGCTGGAATCCTAGAGAAGATATCAAAAGCTATT CAGGCTTGGCTGGTGTCAATTTGACGGAAATACTTCAGGGTGCAGATCAGTCCCAGAAAGGAAAATTGCTGCTTGTATCGTGAGGATGCAACTGGCGACAGGATCCAGGTGTCCATCGAGTGATCAATGCCTACATACATTGCCTAGAAGCATGGATGGCCAGTAATGTAGGGCAAATCGCCTTCAATATTGAAGCAAACGATTTTCCAAGTTGTAATGGTA CCGTTTAGCGTAGTACCTTGAAGTGTTACTTCTGCGAGTTGGGTTTTCCTCTTTGCGTT CCTTGTGGTGTTAATAATCCTGGATTCCTGTGTTGATTCAAATAANCGCNNACCTATCATCAGGGGCTTTAAAAaaa ]
[+] EMBL AU097473 [ GTNCACCCCGACC TGGTAGCTTGCCATCTTTTCAGGAGATCAAGGATACTCTAGGGTTTANCCGATATTACAAAGANGAAAAGCAATATGCAACAGTCCAGCAAGCCCAGCCATTATCCACAAATATTGTACTTCGATTAAAGATCNCAGAAAAAAGTGGAACGCAGAAGATAAATGAAGGGATACCTGCTGGAATCCTAGAGAAGATATCAAAAGCTATTCCAGGCTTGGCTGGTGTCAATTTGACGGAAATACTTCAGGGTGCAGATCAGTCCCAGAAAGGAAAATTGCTGCTTG ATCGTGAGGATGCAACTGGCGACAGGATCCAGGTGTCCATCGAGTGATCAATGCCTACATACATTGCCTAGAAGCATGGATGGCCAGTAATGTAGGGCAAATCGCCTTCAATATTGAAGCAAACGATTTTCCAAGTTGTAATGGTAGCCGTTTAGCGTAGTACCTTGAAGTGTTACTTCTGCGAGTTGGGTTTTCCTCTTTGCGTTGCCTTGTGGTGTTAATAATCCTGGATTCCTGTGTTGATTCAAATAAAAG AAACCTATCATCAGGGGCTTTAGAAaaaaaaaaa ]
[-] EMBL CA760568 [ AGCCATTATCCACAAATATTGTACTTCGATTAAAGATCACAGAAAAAAGTGGAACGCAGAAGATAAATGAAGGGATACCTGCTGGAATCCTAGAGAAGATATCAAAAGCTATTCCAGGCTTGGCTGGTGTCAATTTGACGGAAATACTTCAGGGTGCAGATCAGTCCCAGAAAGGAAAATTGCTGCTTG ATCGTGAGGATGCAACTGGCGACAGGATCCAGGTGTCCATCGAGTGATCAATGCCTACATACATTGCCTAGAAGCATGGATGGCCAGTAATGTAGGGCAAATCGCCTTCAATATTGAAGCAAACGATTTTCCAAGTTGTAATGGTAGCCGTTTAGCGTAGTACCTTGAAGTGTTACTTTTGCGAGTTGGGTTTTCCTCTTTGCGTTGCCTTGTGGTGTTAATAATCCTGGATTCCTGTGTTGATTCAAATAAAAG AAACCTATCATCAGGGGCTTTAGAATGTTCTTTTTTGCAGACCTACGGCAACAAATGCCA GGATCATGACAGCAATTTTCATCAGAATCAGTCATGTACAAAGATAAATGGCAATGCCATATTGTCATGTACTCTCAACATGAACCAACTGATCATCACTGACTGCAACCATGCATGTATCAAGAAACCCAGCATAGAACAAATTTTGGGCATGTGTGCCATTCTGTATAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CA754752 [ CTGCTTG ATCGTGAGGATGCAACTGGCGACAGGATCCAGGTGTCCATCGAGTGATCAATGCCTACATACATTGCCTAGAAGCATGGATGGCCAGTAATGTAGGGCAAATCGCCTTCAATATTGAAGCAAACGATTTTCCAAGTTGTAATGGTAGCCGTTTAGCGTAGTACCTTGAAGTGTTACTTCTGCGAGTTGGGTTTTCCTCTTTGCGTTGCCTTGTGGTGTTAATAATCCTGGATTCCTGTGTTGATTCAAATAAAAG AAACCTATCATCAGGGGCTTTAAAAaaaaaaaaa ]
consensusID : consensus_13430#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 590 fasta sequence
[NGTTGCCTTTNNTACCATTTCCGNGGGANAAGNTCAANGGGGTTGTGGANAAANNATGGCACCGACTGNNTTNCNTTTTNNGGATNAAGAAATTTGGGGTTANCGTATACAGGGGAAAGCAATAGCAAANTCCAGCAAGCCCANCATTTCCACAATATNGTAATTGGATTAAAGATCACAGAAAAAGTGGAACCAGAAGATAAATGAAGGGATACNTGCTGGATCCTAGAGAGATNTCAAAANTATTCCAGGCTTGGCTGGTGTCAATTTGACGGAAATANTTCAGGGTGCAGATCAGTCCCAGAAAGGNAAATTGCTGCTTGATTGNGNGGATGCAACTGGCGACAGGATNCAGGTGTCCATNGNGTGATCAATGCCTACANACATTGCCTAGAAGCATGGATGGCCAGTAATGTAGGGCAAATNGCCTTCAATATTGAAGCAAACGATTTTCCAAGTTGTAATGGTAGCCGTTTAGNGTAGTACCNTGAAGTGTTAATTTTGCGAGTTGGGTTTTCCTTTTTGCGTTGCCTTGTGGTGTTAATAATTCTGGATTCCTGTGTTGATTCAAATAAAAGNAACCTNTNNTC]
[-] EMBL BE229234 [NGTTGCCTTTNNTACCATTTCCGNGGGANAAGNTCAANGGGGTTGTGGANAAANNATGGCACCGACTGNNTTNCNTTTTNNGGATNAAGAAATTTGGGGTTANCGTATACAGGGGAAAGCAATAGCAAANTCCAGCAAGCCCANCATTTCCACAATATNGTAATTGGATTAAAGATCACAGAAAAAGTGGAACCAGAAGATAAATGAAGGGATACNTGCTGGATCCTAGAGAGATNTCAAAANTATTCCAGGCTTGGCTGGTGTCAATTTGACGGAAATANTTCAGGGTGCAGATCAGTCCCAGAAAGGNAAATTGCTGCTTGATTGNGNGGATGCAACTGGCGACAGGATNCAGGTGTCCATNGNGTGATCAATGCCTACANACATTGCCTAGAAGCATGGATGGCCAGTAATGTAGGGCAAATNGCCTTCAATATTGAAGCAAACGATTTTCCAAGTTGTAATGGTAGCCGTTTAGNGTAGTACCNTGAAGTGTTAATTTTGCGAGTTGGGTTTTCCTTTTTGCGTTGCCTTGTGGTGTTAATAATTCTGGATTCCTGTGTTGATTCAAATAAAAGNAACCTNTNNTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13430#0 ACTCCACACCACCACACACTCCCCTTCCCTTCCTTCTCCGGTCTCCTCCCTCTCTCGTCG 60
consensus_13430#1 ------------------------------------------------------------
consensus_13430#0 TCGTCGTCGTCGCCGTCGCCGGCTCGCCGCGTTCTCCTCCGCCGCCGCTGCTGAGCCGGG 120
consensus_13430#1 ------------------------------------------------------------
consensus_13430#0 ATGGCCGCGCGTAGCCCCTACTTCGTCCCCGAGAGCGAGGGGATCCGGGCCGGGGAGTCG 180
consensus_13430#1 ------------------------------------------------------------
consensus_13430#0 CCGGCCGCGGCGCTCCGCAGGATCCTCGCGTCGCCGGGGGCGCACCAGGCCCCCTGCTGC 240
consensus_13430#1 ------------------------------------------------------------
consensus_13430#0 TTCGACGCGCTCGGCGCCCGCCTCATCCAGCGCGCGGGGTTCCCGATCTGCTTCATGGGC 300
consensus_13430#1 ------------------------------------------------------------
consensus_13430#0 GGTTTCTGTGTTTCTGCCGCACGACTTGGATTGCCAGATGCTGGTCTCATCTCATATGGA 360
consensus_13430#1 ------------------------------------------------------------
consensus_13430#0 GAAATGGTAGATCAAGGGCGTCTGATCACTGAAGCTGTATCACTCCCAGTTATCGGCGAT 420
consensus_13430#1 ------------------------------------------------------------
consensus_13430#0 GGTGATAATGGCTATGGAAATGCTATGAGCATTAAGAGAACCGTAAAAGGGTATATTAAT 480
consensus_13430#1 ------------------------------------------------------------
consensus_13430#0 GCTGGTTTTGCTGGAATCATGCTCGAAGATCAGGTGGCACCAAAAGCATGTGGACATACT 540
consensus_13430#1 ------------------------------------------------------------
consensus_13430#0 GAAGGAAGGAAAGTTATCTCAAGGGAGGATGCTATCATGCACATAAAAGCTGCCGTAGAT 600
consensus_13430#1 ------------------------------------------------------------
consensus_13430#0 GCTAGGAAAGAGAGTGGTTCTGACATTGTTATCATTGCAAGGTCAGACTCTCGTCAAGCT 660
consensus_13430#1 ------------------------------------------------------------
consensus_13430#0 ATCTCTATTGATGAAGCGCTATGGAGGGTACAGGCTTTTGCCGATGCTGGAGCAGATGTT 720
consensus_13430#1 ------------------------------------------------------------
consensus_13430#0 CTATTCATTGATGCTCTTGCTTCAATAGAAGAGATGAAAGCATTTTGTGCGGTTTCACCT 780
consensus_13430#1 ------------------------------------------------------------
consensus_13430#0 AAAGTTCCAAAGATGGCAAACATGCTAGAAGGTGGTGGTAAAACTCCCATATTGAGCCCT 840
consensus_13430#1 ------------------------------------------------------------
consensus_13430#0 GCTGAACTTCAGGAGATTGGTTTTAGCCTCGTAGTCTACCCATTGTCCCTGATTGGGGTA 900
consensus_13430#1 ----------------------------------------------NGTTGCCTTTNNTA 14
** * **
consensus_13430#0 TCAATGCTCGCAATGGAGGATGCTCTGATTGCGATAAAAAGTACTGGTGCACCCCGACCT 960
consensus_13430#1 CCATTTCCGNGGGANAAGNTCAANGGGGTTGTGG--ANAAANNATGGCAC----CGAC-- 66
** * * ** * *** * * ** *** * ****
consensus_13430#0 GGTAGCTTGCCATCTTTTCAGGAGATCAAGGATACTCTAGGGTTTAACCGATATTACAAA 1020
consensus_13430#1 -------TGNNTTNCNTTTTNNGGATNAAGAA--ATTTGGGGTT--ANCG----TATACA 111
** * ** *** *** * * * ***** * ** ** * *
consensus_13430#0 GAAGAAAAGCAATATGCAACAGTCCAGCAAGCCCAGCCATTATCCACAAATATTGTACTT 1080
consensus_13430#1 GG-GGAAAGCAATA-GCAA-ANTCCAGCAAGCCCANC-ATT-TCCACAA-TATNGTAATT 165
* * ********* **** * ************* * *** ******* *** *** **
consensus_13430#0 CGATTAAAGATCACAGAAAAAAGTGGAACGCAGAAGATAAATGAAGGGATACCTGCTGGA 1140
consensus_13430#1 GGATTAAAGATCACAGAAAAA-GTGGAAC-CAGAAGATAAATGAAGGGATACNTGCTGGA 223
******************** ******* ********************** *******
consensus_13430#0 ATCCTAGAGAAGATATCAAAAGCTATTCCAGGCTTGGCTGGTGTCAATTTGACGGAAATA 1200
consensus_13430#1 -TCCTAGAGA-GATNTCAAAAN-TATTCCAGGCTTGGCTGGTGTCAATTTGACGGAAATA 280
********* *** ****** *************************************
consensus_13430#0 CTTCAGGGTGCAGATCAGTCCCAGAAAGGAAAATTGCTGCTTGATCGTGAGGATGCAACT 1260
consensus_13430#1 NTTCAGGGTGCAGATCAGTCCCAGAAAGGNAAATTGCTGCTTGATTGNGNGGATGCAACT 340
**************************** *************** * * **********
consensus_13430#0 GGCGACAGGATCCAGGTGTCCATCGAGTGATCAATGCCTACATACATTGCCTAGAAGCAT 1320
consensus_13430#1 GGCGACAGGATNCAGGTGTCCATNGNGTGATCAATGCCTACANACATTGCCTAGAAGCAT 400
*********** *********** * **************** *****************
consensus_13430#0 GGATGGCCAGTAATGTAGGGCAAATCGCCTTCAATATTGAAGCAAACGATTTTCCAAGTT 1380
consensus_13430#1 GGATGGCCAGTAATGTAGGGCAAATNGCCTTCAATATTGAAGCAAACGATTTTCCAAGTT 460
************************* **********************************
consensus_13430#0 GTAATGGTAGCCGTTTAGCGTAGTACCTTGAAGTGTTACTTCTGCGAGTTGGGTTTTCCT 1440
consensus_13430#1 GTAATGGTAGCCGTTTAGNGTAGTACCNTGAAGTGTTAATTTTGCGAGTTGGGTTTTCCT 520
****************** ******** ********** ** ******************
consensus_13430#0 CTTTGCGTTGCCTTGTGGTGTTAATAATCCTGGATTCCTGTGTTGATTCAAATAAAAGAA 1500
consensus_13430#1 TTTTGCGTTGCCTTGTGGTGTTAATAATTCTGGATTCCTGTGTTGATTCAAATAAAAGNA 580
*************************** ***************************** *
consensus_13430#0 ACCTATCATCAGGGGCTTTAGAATGTTCATTTCTGCAGACCTACGGCAACAAATGCCAGG 1560
consensus_13430#1 ACCTNTNNTC-------------------------------------------------- 590
**** * **
consensus_13430#0 GATCATGACAGCAATTTTCATCAGAATCAGTCATGTACAAAGATAAATGGCAATGCCATA 1620
consensus_13430#1 ------------------------------------------------------------
consensus_13430#0 TTGTCATGTACTCTCAACATGAACCAACTGATCATCACTGACTGCAACCATGCATGTATC 1680
consensus_13430#1 ------------------------------------------------------------
consensus_13430#0 AAGAAACCCAGCATAGAACAAATTTTGGGCATGTGTGCCATTCTGTATAAAAAAAAAAAA 1740
consensus_13430#1 ------------------------------------------------------------
consensus_13430#0 AAAAAAAA 1748
consensus_13430#1 --------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||