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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13432#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1148 fasta sequence
[AGTTCAAACTGACAGCGGAGCG-GA-GAAGCGTCGGAGGAGATGGAGGTTGCGACGGCGACGGAGGCGTCGGCGCCGGCGGCGA-GCAGGCGGAGCCAC-CCGTTCCCGTGGCTAGACCTGGCCATCTCCGAGCCCTACTACTTCCTCCACCTCGTCGCCTTCTTCTCCTACTTCGCGGCCCGCAGCACGGTGCCCTCGGCCGACGACGGCCTCCTCCTCCGCCGGGAGATCCAGGCGGTGCTCACGTTCCTCGTGCTCTTCGTCGTGAAGATCGTGAAAGAGGAAAACTGGGAAACATGCATTGCTGATTCACTGCTCTATGCTAAGGGATTATTGCTGGCAGTTACTTTGGTTATCGATTATTGGCTGACTGTCTCCTACTTAC-TGGGATTTGTTGTTATATATGCTGTTGCTC-AACAG-CCACCTTAT-GAT-GGTCTTGGTCATTCAAATCATTTGACTCCATTGCAACTGG-AAGGCCTACTAACGGAGGAGCCAACAACAC-GATTTTGGCTGGTTGAATTCCGGACTTCCTTTTCAGGAACATGTATAGAAGCAAGCAGTGTTCTGCCTGAACTCTCTAACATATACTCTAACAAGAACATTTCGTTTGGAATAATTGATCTTGGGCATTTTCCAAATGCTGCAGCAAAGTTTGGAATATCCATGTGGGATCATCTTCCCACTTATATACTCTTTGACAAGGCCACTGAAGTTGCACGATTCCCAGAAATCATGAATGAATCAAAAGTATTTGTGCCAAAAATTACAAAGAAACTTCTCTGCCAGCACTTC-GACCTTGA-CAGGCGACT-GATTGAATACCT-AT-CTAGATGACCCA-TCATCTATCCCAGCTGTCT-CAAAAAG-AAAGCG-CCAATTCCCTTTTGTCGACGAACCAGATGAATGAACCGGACAGTTGTGCGGCAGCAATCACTTCAGGGGGTATCTTCAAGCTTGTTTTATTCTATGAGTTTACTTGTACCCATCCAATCAAGGACAGTATACTTTAGGGTAGGGTGGGGGTGGGCAGGATTATGATTTGCATCTTACTACCATATGTCACCTCTTGAATTACGGAATGTTACCACACCTGTGGAGATCTTGCAATGATATGCCAACTATGTTTTCCACTGCAAAAAAAAATCAATTCAGACACC]
[+] EMBL AK070272 [AGTTCAAACTGACAGCGGAGCG GA GAAGCGTCGGAGGAGATGGAGGTTGCGACGGCGACGGAGGCGTCGGCGCCGGCGGCGA GCAGGCGGAGCCAC CCGTTCCCGTGGCTAGACCTGGCCATCTCCGAGCCCTACTACTTCCTCCACCTCGTCGCCTTCTTCTCCTACTTCGCGGCCCGCAGCACGGTGCCCTCGGCCGACGACGGCCTACTCCTCCGCCGGGAGATCCAGGCGGTGCTCACGTTCCTCGTGCTCTTCGTCGTGAAGATCGTGAAAGAGGAAAACTGGGAAACATGCATTGCTGATTCACTGCTCTATGCTAAGGGATTATTGCTGGCAGTTACTTTGGTTATCGATTATTGGCTGACTGTCTCCTACTTAC TGGGATTTGTTGTTATATATGCTGTTGCTC AACAG CCACCTTAT GAT GGTCTTGGTCATTCAAATCATTTGACTCCATTGCAACTGG AAGGCCTACTAACGGAGGAGCCAACAACAC GATTTTGGCTGGTTGAATTCCGGACTTCCTTTTCAGGAACATGTATAGAAGCAAGCAGTGTTCTGCCTGAACTCTCTAACATATACTCTAACAAGAACATTTCGTTTGGAATAATTGATCTTGGGCATTTTCCAAATGCTGCAGCAAAGTTTGGAATATCCATGTGGGATCATCTTCCCACTTATGTACTCTTTGACAAGGCCACTGAAGTTGCACGATTCCCAGAAATCATGAATGAATCAAAAGTATTTGTGCCAAAAATTACAAAGAAACTTCTCTGCCAGCACTTC GACCTTGA CAGGCGACT GATTGAATACCT AT CTAGATGACCCA TCATCTATCCCAGCTGTCT CAAAAAG AAAGCG CCAATTCCCTTTTGTCGACGAACCAGATGAATGAACCGGACAGTTGTGCGGCAGCAATCACTTCAGGGGGTATCTTCAAGCTTGTTTTATTCTATGAGTTTACTTGTACCCATCCAATCAAGGACAGTATACTTTAGGGTAGGGTGGGGGTGGGCAGGATTATGATTTGCATCTTACTACCATATGTCACCTCTTGAATTACGGAATGTTACCACACCTGTGGAGATCTTGCAATGATATGCCAACTATGTTTTCCACTGCAGTTAGTGATCAATTCAGACACC]
[+] EMBL OSC103651 [ TCAAACTGACAGCGGA CGTNANGAAGCGTCGGAGGAGATGGAGGTTGCGACGGCGACGGAGGCGTCGGCGCCGGCGG GANNCAGGCGGAG CACNCCGTTCCCGTGGCTAGACCTGGCCATCTCCGAGCCCTACTACTTCCTCCACCTCGTCGCCTTCTTCTCCTACTTCGCGGCCCGCAGCACGGTGCCCTCGG ]
[+] EMBL AK104558 [ GCGGAGCG GA GAAGCGTCGGAGGAGATGGAGGTTGCGACGGCGACGGAGGCGTCGGCGCCGGCGGCGA GCAGGCGGAGCCAC CCGTTCCCGTGGCTAGACCTGGCCATCTCCGAGCCCTACTACTTCCTCCACCTCGTCGCCTTCTTCTCCTACTTCGCGGCCCGCAGCACGGTGCCCTCGGCCGACGACGGCCTCCTCCTCCGCCGGGAGATCCAGGCGGTGCTCACGTTCCTCGTGCTCTTCGTCGTGAAGATCGTGAAAGAGGAAAACTGGGAAACATGCATTGCTGATTCACTGCTCTATGCTAAGGGATTATTGCTGGCAGTTACTTTGGTTATCGATTATTGGCTGACTGTCTCCTACTTAC TGGGATTTGTTGTTATATATGCTGTTGCTC AACAG CCACCTTAT GAT GGTCTTGGTCATTCAAATCATTTGACTCCATTGCAACTGG AAGGCCTACTAACGGAGGAGCCAACAACAC GATTTTGGCTGGTTGAATTCCGGACTTCCTTTTCAGGAACATGTATAGAAGCAAGCAGTGTTCTGCCTGAACTCTCTAACATATACTCTAACAAGAACATTTCGTTTGGAATAATTGATCTTGGGCATTTTCCAAATGCTGCAGCAAAGTTTGGAATATCCATGTGGGATCATCTTCCCACTTATATACTCTTTGACAAGGCCACTGAAGTTGCACGATTCCCAGAAATCATGAATGAATCAAAAGTATTTGTGCCAAAAATTACAAAGAAACTTCTCTGCCAGCACTTC GACCTTGA CAGGCGACT GATTGAATACCT AT CTAGATGACCCA TCATCTATCCCAGCTGTCT CAAAAAG AAAGCG CCAATTCCCTTTTGTCGACGAACCAGATGAATGAACCGGACAGTTGTGCGGCAGCAATCACTTCAGGGGGTATCTTCAAGCTTGTTTTATTCTATGAGTTTACTTGTACCCATCCAATCAAGGACAGTATACTTTAGGGTAGGGTGGGGGTGGGCAGGATTATGATTTGCATCTTACTACCATATGTCACCTCTTGAATTACGGAATGTTACCACACCTGTGGAGATCTTGCA ]
[+] EMBL OSS1846A [ GACGGCGACGGAGGCGTCGGCGCCGGCGG GA GCAGGCGGA NCAC CCGTTCCCGTGGCTAGACCTGGCCATCTCCGAGCCCTACTACTTCCTCCACCTCGTCGCCTTCTTCTCCTACTTCGCGGCCCGCAGCACGGTGCCCTCGGCCGACGACGGCCTCCTCCTCCGCCG GGCGGTGCTCACGTTCCTCGTGCTCTTCGTCGTGAAGATCGTGAAANAGGAAAACTGGGAAACATGCATTGCTGATTCACTGCTCTATGCTAAGGGATTATTGCTGGCAGTTACTTTGGTTATCGATTATTGGCTGACTGTCTCCTACTTAC TGGGATTTGTTGTTATATATGCTGTTGCT AACAG CCACCTTAT GAT GGTCTTGGTAATTCAAAT ]
[+] EMBL C91794 [ GCGACGGAGGCGTCGGCGCCGGCGGGAA GCAGGCGGA CCAC CCGTTCCCGTNGCTAGACCTGGCCATCTCCGAGCCCTACTACTTCCTCCACNTCGTCGCCTTCTTCTCCTACTTCGCGGCCCGCAGCACGGTGCCCTCGGCCGACGACGGCCTCCTCCTCCGCCGGGAGATCCAGGCGGTGCTCACGTTCCTCGTGCTCTTCGTCGTGAAGATCGTNAAANAGGAAAACTGGGAAACATGCATTGCTGAATCACTGCTCTATGCTAAGGGATTATTGCTGGCAGTTACTTTGGTTATCGATTATTGGCTGACTGTCTCCTACTTACTTGGGA ]
[+] EMBL AU097072 [ TTGCTCAAACAGCCCACCTTATGGATGGGTCTTGGTCATTCAAATCATTTGACCCNATTGCAACTGGNAAGGCTTACTAACGGAGGAGCNAACAACACGGATTTTGGCTGGTTGAATTCCGGACTTCNTTTTCAGGAACATGTATAGAGGCAAGCAGTGTTCTGCCTG ACTCTCTAACATATACTCTAACAAGAACATTTCGTTTGGAATAATTGCTCTTGGNCATTTTCCAAATGCTGCAGCAAAGTTTGGAATATCCATGTGGGATCATCTTCCCACTTATATACTCTTTGACAAGGCCACTGAAGTNGCACGATTCCCAGAAATCATGAATGAATCAAAAGTATTTGTGCCAAAAATTACAAAGAAACTTCTCTGCCAGCACTTC GACCTTGA CAGGCGACT GATTGAATACCT AT CTAGATGACCCA TCATCTATCCCAGCTGTCT CAAAAAG AAAGCG CCAATTCCCTTTTGTCGACGAACCAGATGAATGAACCGGACAGTTGTGCGGCAGCAATCACTTCAGGGGGTATCTTCAAGCTTGTTTTATTCTATGAGTTTACTTGTACCCATCCAATCAAGGACAGTATACTTTAGGGTAGGGTGGGGGTGGGCAGGATTATGATTTGCATCTTACTACCATATGTCACCTCTTGAATTACGGAATGTTACCACACCTGTGGAGATCTTGCAATGATATGCCAACTATGTTTTCCACTGCAAAAAAAAA ]
[+] EMBL AU197539 [ TTGACAAGGCCACTGAAGTTGCACGATTCCCAGAAATCATGAATGAATCAAAAGTATTTGTGCCAAAAATTACAAAGAAACTTCTCTGCCAGCACTTC GACCTTGA CAGGCGACT GATTGAATACCT AT CTAGATGACCCA TCATCTATCCCAGCTGTCT CAAAAAG AAAGCG CCAATTCCCTTTTGTCGACGAACCAGATGAATGAACCGGACAGTTGTGCGGCAGCAATCACTTCAGGGGGTATCTTCAAGCTTGTTTTATTCTATGAGTTTACTTGTACCCATCCAATCAAGGACAGTATACTTTAGGGTAGGGTGGGGGTGGGCAGGATTATGATTTGCATCTTACTACCATATGTCACCTCTTGAATTACGGAATGTTACCACACCTGTGGAGATCTTGCAATGATATGCCAAaaaaaa ]
[+] EMBL OSS3602A [ AAGGCCACTGAAGTTGCACGATTCCCAGAAATCATGAATGANTCAAAAGTATTTGTGCCAAAAATTACAAAGAAACTTCTCTGCCAGCACTTC GACCTTGA CAGGCGACT GATTGANTACCT AT CTAGATGACCCA TCATCTATCCCAGCTGTCT CAAAAAG AAAGCG CCAATTCCCTTTTGTCGACGAACCAGATGAATGAACCGGACAGTTGTGCGGCAG AATCACTTCAGGGGGTATCTTCAAGCTTGTTTTATTCTATGAGTTTACTTGTACCCATCCAATCAAGGACAGTATACTTTAGGGTAGGGTGGGGGTGGGCAGGATTATGATTTGCATCTTACTACCATATGTCACCTCTTGAATTACGGAATGTTACCACACCTGTGGAGATCTTGCAATGATATGCCAACTATGNTTTCCACTGCAAAAAAAAAaaaa ]
[+] EMBL OSS3088A [ AAGGCCACTGAAGTTGCACGATTCCCAGAAATCATGAATGAATCAAAAGTATTTGTGCCAAAAATTACAAAGAAACTTCTCTGCCAGCACTTC GACCTTGA CAGGCGACT GATTGAATACCT AT CTAGATGACCCA TCATCTATCCCAGCTGTCT CAAAAAG AAAGCG CCAATTCCCTTTTGTCGACGAACCAGATGAATGAACCGGACAGTTGTGCGGCAG AATCACTTCAGGGGGTATCTTCAAGCTTGTTTTATTCTATGAGTTTACTTGTACCCATCCAATCAAGGACAGTATACTTTAGGGTAGGGTGGGG ]
[+] EMBL OSS4218A [ AAGGCCACTGAAGTTGCACGATTCCCAGAAATCATGAATGAATCAAAAGTATTTGTGCCAAAAATTACAAAGAAACTTCTCTGCCAGCACTTC GACCTTGA CAGGCGACT GATTGAATACCT AT CTAGATGACCCA TCATCTATCCCAGCTGTCT CAAAAAG AAAGCG CCAATTCCCTTTTGTCGACGAACCAGATGAATGAACCGGACAGTTGTGCGGCAG AATCACTTCAGGGGGTATCTTCAAGCTTGTTTTATTCTATGAGTTTACTTGTACCCATCCAATCAAGGACAGTATACTTTAGGGTAGGGTGGGGGTGGGCAGGATTATGATTTGCATCTTACTACCATATGTCACCTCTTGNATTACGGGATGTTACCACACCTGTGGAGNTCTTGCAATGNTATGCCAACTATG ]
[+] EMBL AU108355 [ CTTCGGACCTGGACCAGGCGACTGGATTGAATACCTNATCCTAGATGACCCATTCATCTATCCCAGCTGTCTCCAAAAAGNAAAGCGCCCAATTCCCCTTTGTCGACGAACCAGATGAATGAACCGGACAGTTGTGCGGCAGCAATCACTTCAGGGGGTATCTTCAAGCTTGTTTTATTCTATGAGTTTACTTGTACCCATCCAATCAAGGACAGTATACTTTAGGGTAGGGTGGGGGTGGGCAGGATTATGATTTGCATCTTACTACCATATGTCACCTCTTGAATTACGGAATGTTACCACACCTGTGGAGATCTTGCAATGATATGCCAACTATGTTTTCCACTGCAAAAAAAA ]
consensusID : consensus_13432#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 431 fasta sequence
[TTGGCCACCTGAAGNTGCNCGATNNCCATAAATCATGAATGAATNAANAGNATTTAGTGCCANAAATTNCAAAGAAACTTGTCTGGCAGCACTTACGACCTTGACAGGCCGANTGATTGAATACCTATNTAGATGACCCATNATCTATCCAAGCTGTCTCAAAAAGAAAGCGCCAATTCCCTTTTGTCGACGAACCANATGAATGAACCGGACAGTTGAGCGGGAGCAATCACTTTAGGGGGTATCTTCAAGCTNGNTTTATTCTATGAGTTTACTTGNACCCATCCAATNAAGGACAGTATACTTTAGGGTAGGGTGGGGGTGGGCAGGATTATGATTTGCATCTTACTACCATATGTCACCTCTTGAATTACGGAATGTTACCACACCTGTGGAGATCTTGNAATGATAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU223011 [TTGGCCACCTGAAGNTGCNCGATNNCCATAAATCATGAATGAATNAANAGNATTTAGTGCCANAAATTNCAAAGAAACTTGTCTGGCAGCACTTACGACCTTGACAGGCCGANTGATTGAATACCTATNTAGATGACCCATNATCTATCCAAGCTGTCTCAAAAAGAAAGCGCCAATTCCCTTTTGTCGACGAACCANATGAATGAACCGGACAGTTGAGCGGGAGCAATCACTTTAGGGGGTATCTTCAAGCTNGNTTTATTCTATGAGTTTACTTGNACCCATCCAATNAAGGACAGTATA ]
[+] EMBL AU166113 [ AGCTGTNTCAAAAAGAAAGCGCNAATTCCCTTTTGTCGACGAACCAGATGAATGAACCGGACAGTTGTGCGGCAGCAATCACTTCAGGGGGTATCTTCAAGCTTGTTTTATTCTATGAGTTTACTTGTACCCATCCAATCAAGGACAGTATACTTTAGGGTAGGGTGGGGGTGGGCAGGATTATGATTTGCATCTTACTACCATATGTCACCTCTTGAATTACGGAATGTTACCACACCTGTGGAGATCTTGNAATGATAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13432#0 AGTTCAAACTGACAGCGGAGCGGAGAAGCGTCGGAGGAGATGGAGGTTGCGACGGCGACG 60
consensus_13432#1 ------------------------------------------------------------
consensus_13432#0 GAGGCGTCGGCGCCGGCGGCGAGCAGGCGGAGCCACCCGTTCCCGTGGCTAGACCTGGCC 120
consensus_13432#1 ------------------------------------------------------------
consensus_13432#0 ATCTCCGAGCCCTACTACTTCCTCCACCTCGTCGCCTTCTTCTCCTACTTCGCGGCCCGC 180
consensus_13432#1 ------------------------------------------------------------
consensus_13432#0 AGCACGGTGCCCTCGGCCGACGACGGCCTCCTCCTCCGCCGGGAGATCCAGGCGGTGCTC 240
consensus_13432#1 ------------------------------------------------------------
consensus_13432#0 ACGTTCCTCGTGCTCTTCGTCGTGAAGATCGTGAAAGAGGAAAACTGGGAAACATGCATT 300
consensus_13432#1 ------------------------------------------------------------
consensus_13432#0 GCTGATTCACTGCTCTATGCTAAGGGATTATTGCTGGCAGTTACTTTGGTTATCGATTAT 360
consensus_13432#1 ------------------------------------------------------------
consensus_13432#0 TGGCTGACTGTCTCCTACTTACTGGGATTTGTTGTTATATATGCTGTTGCTCAACAGCCA 420
consensus_13432#1 ------------------------------------------------------------
consensus_13432#0 CCTTATGATGGTCTTGGTCATTCAAATCATTTGACTCCATTGCAACTGGAAGGCCTACTA 480
consensus_13432#1 ------------------------------------------------------------
consensus_13432#0 ACGGAGGAGCCAACAACACGATTTTGGCTGGTTGAATTCCGGACTTCCTTTTCAGGAACA 540
consensus_13432#1 ------------------------------------------------------------
consensus_13432#0 TGTATAGAAGCAAGCAGTGTTCTGCCTGAACTCTCTAACATATACTCTAACAAGAACATT 600
consensus_13432#1 ------------------------------------------------------------
consensus_13432#0 TCGTTTGGAATAATTGATCTTGGGCATTTTCCAAATGCTGCAGCAAAGTTTGGAATATCC 660
consensus_13432#1 ------------------------------------------------------------
consensus_13432#0 ATGTGGGATCATCTTCCCACTTATATACTCTTTGACAAGGCCAC-TGAAGTTGCACGATT 719
consensus_13432#1 ------------------------------------TTGGCCACCTGAAGNTGCNCGATN 24
****** ***** *** ****
consensus_13432#0 CCCAGAAATCATGAATGAATCAAAAGTATTT-GTGCCAAAAATTACAAAGAAACTTCTCT 778
consensus_13432#1 NCCATAAATCATGAATGAATNAANAGNATTTAGTGCCANAAATTNCAAAGAAACTTGTCT 84
*** *************** ** ** **** ****** ***** *********** ***
consensus_13432#0 GCCAGCACTT-CGACCTTGACAGGC-GACTGATTGAATACCTATCTAGATGACCCATCAT 836
consensus_13432#1 GGCAGCACTTACGACCTTGACAGGCCGANTGATTGAATACCTATNTAGATGACCCATNAT 144
* ******** ************** ** *************** ************ **
consensus_13432#0 CTATCCCAGCTGTCTCAAAAAGAAAGCGCCAATTCCCTTTTGTCGACGAACCAGATGAAT 896
consensus_13432#1 CTATCCAAGCTGTCTCAAAAAGAAAGCGCCAATTCCCTTTTGTCGACGAACCANATGAAT 204
****** ********************************************** ******
consensus_13432#0 GAACCGGACAGTTGTGCGGCAGCAATCACTTCAGGGGGTATCTTCAAGCTTGTTTTATTC 956
consensus_13432#1 GAACCGGACAGTTGAGCGGGAGCAATCACTTTAGGGGGTATCTTCAAGCTNGNTTTATTC 264
************** **** *********** ****************** * *******
consensus_13432#0 TATGAGTTTACTTGTACCCATCCAATCAAGGACAGTATACTTTAGGGTAGGGTGGGGGTG 1016
consensus_13432#1 TATGAGTTTACTTGNACCCATCCAATNAAGGACAGTATACTTTAGGGTAGGGTGGGGGTG 324
************** *********** *********************************
consensus_13432#0 GGCAGGATTATGATTTGCATCTTACTACCATATGTCACCTCTTGAATTACGGAATGTTAC 1076
consensus_13432#1 GGCAGGATTATGATTTGCATCTTACTACCATATGTCACCTCTTGAATTACGGAATGTTAC 384
************************************************************
consensus_13432#0 CACACCTGTGGAGATCTTGCAATGATATGCCAACTATGTTTTCCACTGCAAAAAAAAATC 1136
consensus_13432#1 CACACCTGTGGAGATCTTGNAATGATAAAAAAAAAAAA-----------AAAAAAAAA-- 431
******************* ******* ** * *********
consensus_13432#0 AATTCAGACACC 1148
consensus_13432#1 ------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||