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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13450#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1690 fasta sequence
[CGAGTAGTAATTCCCACGCGCGGCGGGGGGCATTCCCGTACATGGTGTACTTTTCTGGGCGGATGTCTGCCTCCGTCGTGTATCCCCCCCGCTGGATTCTGTGACGGGTGCGTGCTCTGCTCCTCCCGCGCGCGTGCCGCCAAACCACACACACCCCCTCCCCTGCCCCCACCCACACCCGCCGGTCGCTGCCTCGCTCGCGCCCAAGCCGGATCACGCCTCGATCTCCCGTGAGCCGGGGCGTGCGTTGGGCGTTGGCGTACAATGCGGCTCGCGCTCGCTGCCGCGCCCGTGACGACGCGGATCCCCTGTTTTGTACACGCGCGGGCGCACGCTTTGTCGCGGTGGTGACGCGGGCTGCCGTTTCTCTGTTTCATTTGGGAGGGGGGGGTGTCGTCTCGTGTCGTGCTGCTGATGGCGTGTGTGTGTGTACGTGTGGTTGGTTTGCAGAGGGTGGGGGAGATGATGCGGCAGCTCAAGTACGTGCGGGGCCTGGAGTTCGCGGCGGGGGTCGGGTACGTGGACTTCCTCTCGCGCGTGAACCGGGTGGAGGACGAGGCCCGCCGCAACGGGAGCTGGGCCGCGCCGCACCCGTGGCTCAACCTCTTCATCTCCTCACGCGACATCGCCGCCTTCGACCGCGCCGTCCTCAACGGCATGCTCGCCGACGGCGTCGACGGGCCCATGCTCATCTACCCCATGCTCAAGTCCAAGTGAGTACTACTAGTATACTATTTGTTTATCTCCTGGGATGGGTTTTTGTTTAATCGGATAATTAATTAGCCCATTTGGTCCGTACTTATAATACGACGGGGGTTTCTGGTTGTCTTCCATCCCGTTCTGTTTTGGATTTAGCCTTGTCATATATCTGCCGCCATTAGGATTTAGCAGCCACTAACCCCAGGTTGCTATGATTGATGTAAATTCCTTTTTCTTCTTTTTTTTCTCTCTCTCTCTGTCTCAGTTTGCCGCCAATGCACGCACGCACGCACACGAGCTGCTAATTAAAACGCCCCCTAATTAACACGTTTGCGTGTGACAGGTGGGACCCGGCCACGTCGGTGGCGCTGCCGAATGGCGAGATCTTCTACCTGGTGGCGCTGCTCCGATTCTGCCGGCCCTACCCCGGTGGTGGCCCGCCGGTGGACGAGCTGGTGGCGCAGAACAACGCAATCATTGACGCCTGCCGGTCCAACGGCTACGACTACAAGATATACTTCCCGAGCTACCACGCCCAGTCCGACTGGTCGCGCCACTTCGGCGCCAAGTGGAGCCGCTTCGTCGACCGCAAGGCACGCTACGACCCGCTCGCCATCCTCGCCCCCGGCCAGAACATCTTCGCCCGGACCCCCTCCTCCGTCGCCGCCGCCGCCGCCGTGATCGTGTAAGAGACGGATGATCGACGATGGTGATTATGCTGTTTGCTGGGTTAATTCTGGATGATGGCGACGATGAGGATGATGGTGATGATGGGGATGAAGAGGAGGGATCGGGACGAGCACAATGATGATGGTGATGATGATAGGGTCATTGTTAGGTACATTTGGGAGGGGTGCAAAAGAGGGAGGTTTCGGTTCGATGGGATGGACGACGTGTCAAGGGCAGTAGGGCCGGCGGCTGTGGCTCGGCTCTGCAGCAGGAGTTGCAAAAGGGAAAACGAAAGATGTAAACGTTTTCCTGCTTTGATTCT]
[+] EMBL AK103510 [CGAGTAGTAATTCCCACGCGCGGCGGGGGGCATTCCCGTACATGGTGTACTTTTCTGGGCGGATGTCTGCCTCCGTCGTGTATCCCCCCCGCTGGATTCTGTGACGGGTGCGTGCTCTGCTCCTCCCGCGCGCGTGCCGCCAAACCACACACACCCCCTCCCCTGCCCCCACCCACACCCGCCGGTCGCTGCCTCGCTCGCGCCCAAGCCGGATCACGCCTCGATCTCCCGTGAGCCGGGGCGTGCGTTGGGCGTTGGCGTACAATGCGGCTCGCGCTCGCTGCCGCGCCCGTGACGACGCGGATCCCCTGTTTTGTACACGCGCGGGCGCACGCTTTGTCGCGGTGGTGACGCGGGCTGCCGTTTCTCTGTTTCATTTGGGAGGGGGGGGTGTCGTCTCGTGTCGTGCTGCTGATGGCGTGTGTGTGTGTACGTGTGGTTGGTTTGCAGAGGGTGGGGGAGATGATGCGGCAGCTCAAGTACGTGCGGGGCCTGGAGTTCGCGGCGGGGGTCGGGTACGTGGACTTCCTCTCGCGCGTGAACCGGGTGGAGGACGAGGCCCGCCGCAACGGGAGCTGGGCCGCGCCGCACCCGTGGCTCAACCTCTTCATCTCCTCACGCGACATCGCCGCCTTCGACCGCGCCGTCCTCAACGGCATGCTCGCCGACGGCGTCGACGGGCCCATGCTCATCTACCCCATGCTCAAGTCCAAGTGAGTACTACTAGTATACTATTTGTTTATCTCCTGGGATGGGTTTTTGTTTAATCGGATAATTAATTAGCCCATTTGGTCCGTACTTATAATACGACGGGGGTTTCTGGTTGTCTTCCATCCCGTTCTGTTTTGGATTTAGCCTTGTCATATATCTGCCGCCATTAGGATTTAGCAGCCACTAACCCCAGGTTGCTATGATTGATGTAAATTCCTTTTTCTTCTTTTTTTTCTCTCTCTCTCTGTCTCAGTTTGCCGCCAATGCACGCACGCACGCACACGAGCTGCTAATTAAAACGCCCCCTAATTAACACGTTTGCGTGTGACAGGTGGGACCCGGCCACGTCGGTGGCGCTGCCGAATGGCGAGATCTTCTACCTGGTGGCGCTGCTCCGATTCTGCCGGCCCTACCCCGGTGGTGGCCCGCCGGTGGACGAGCTGGTGGCGCAGAACAACGCAATCATTGACGCCTGCCGGTCCAACGGCTACGACTACAAGATATACTTCCCGAGCTACCACGCCCAGTCCGACTGGTCGCGCCACTTCGGCGCCAAGTGGAGCCGCTTCGTCGACCGCAAGGCACGCTACGACCCGCTCGCCATCCTCGCCCCCGGCCAGAACATCTTCGCCCGGACCCCCTCCTCCGTCGCCGCCGCCGCCGCCGTGATCGTGTAAGAGACGGATGATCGACGATGGTGATTATGCTGTTTGCTGGGTTAATTCTGGATGATGGCGACGATGAGGATGATGGTGATGATGGGGATGAAGAGGAGGGATCGGGACGAGCACAATGATGATGGTGATGATGATAGGGTCATTGTTAGGTACATTTGGGAGGGGTGCAAAAGAGGGAGGTTTCGGTTCGATGGGATGGACGACGTGTCAAGGGCAGTAGGGCCGGCGGCTGTGGCTCGGCTCTGCAGCAGGAGTTGCAAAAGGGAAAACGAAAGATGTAAACGTTTTCCTGCTTTGATTCT]
[-] EMBL AK109251 [ CTGTCTCAGTTTGCCGCCAATGCACGCACGCACGCACACGAGCTGCTAATTAAAACGCCCCCTAATTAACACGTTTGCGTGTGACAGGTGGGACCCGGCCACGTCGGTGGCGCTGCCGAATGGCGAGATCTTCTACCTGGTGGCGCTGCTCCGATTCTGCCGGCCCTACCCCGGTGGTGGCCCGCCGGTGGACGAGCTGGTGGCGCAGAACAACGCAATCATTGACGCCTGCCGGTCCAACGGCTACGACTACAAGATATACTTCCCGAGCTACCACGCCCAGTCCGACTGGTCGCGCCACTTCGGCGCCAAGTGGAGCCGCTTCGTCGACCGCAAGGCACGCTACGACCCGCTCGCCATCCTCGCCCCCGGCCAGAACATCTTCGCCCGGACCCCCTCCTCCGTCGCCGCCGCCGCCGCCGTGATCGTGTAAGAGACGGATGATCGACGATGGTGATTATGCTGTTTGCTGGGTCAATTCTGGATGATGGCGACGATGAGGATGATGGTGATGATGGGGATGAAGAGGAGGGATCGGGACGAGCACAAT ]
consensusID : consensus_13450#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1164 fasta sequence
[AGCGAGCCGCTGCACAGTGACAT-CACGGTTACAGAGAGAGCTTAGCTCTGCTCGGGCTCGGCTCAGCTCAGCTCAGCTGC------AGAGAGAGAGAGAC--AGAGAAACAAGAAACGCAGCGGCGAGCCAAGATGATGCTCGCGTACATGGACCACGCCGCCGCGGCCGCGGAGCCGGACGCCGGCGCCGAGCCGGCGGTGGCCGCGGTCGACGCGGCCGAGTTCGCGGCGGCGATGGACTTCGGCGGCCTGGTGAGCGCCCGCCCCGCCGCCGTCGTCCGCCCGGCGAGCTCGGACGACGTGGCCAGCGCCATCCGCGCGGCGGCGCGCACCGCGCACCTGACCGTGGCCGCCCGCGGAAACGGCCACTCGGTGGCCGGGCAGGCCATGGCCCGCGGCGGCCTCGTCCTCGACATGCGCGCCCTCCCTCGCCGCATGCAGCTCGTCGTCGCCCCGTCCGGCGAGAAGTTCGCCGACGTCCCGGGCGGCGCGCTCTGGGAGGAGGTGCTCCACTGGGCAGTGTCGAAGCACGGCCTCGCCCCCGCCTCCTGGACGGACTACCTCCGCCTCACCGTCGGCGGCACGCTCTCCAACGGCGGCGTGAGCGGGCAATCCTTCCGGTACGGGCCCCAGGTGTCCAACGTCGCCCAGCTCGAGGTGGTGACCGGC-GACGGCGAGTGCCATGTCTGCTCCCGCTCCGCCGACCCCGACCTCTTCTTCTCCGTCCTCGGCGGCCTCTGCCAGTTCTGCGTCATCACCCGCGCCCTCATCCCTCTCTCCCCCGCGCCCCAAACAGTGCGGAGGACGCGGGTGGTGTACGCTAGCTTCGCGGACTACGCGGCGGACGCGGAGTGGCTGGTGACTCGGCCGCCGCACGAGGCGTTCGACTACGTGGAGGGATTCGCGTTCGTGCGGAGCGACGACCCGGTCAACGGCTGGCCAACGGTGCCCATCCCGGACGGCGCTCACTTCGACGCCTCCCTCCTCCCGGCCAACGCCGGCCCGGTGCTCTACTGCCTCGAGGTCGCCCTGTACCAACGCGGCGGCGGCGGAGACGGCGGTGGCGACGACATGGACAATAGGGTGGGGGAGATGATGCGGCAGCTCAAGTACGTGCGGGGCCTGGAGTTCGCGGCGGGGGTCGGGTACGTGGACTTCCTCTCGCGCGTGA]
[+] EMBL CB644658 [AGCGAGCCGCTGCACAGTGACAT CACGGTTACAGAGAGAGCTTAGCTCTGCTCGGGCTCGGCTCAGCTCAGCTCAGCTGC AGAGAGAGAGAGAC AGAGAAACAAGAAACGCAGCGGCGAGCCAAGATGATGCTCGCGTACATGGACCACGCCGCCGCGGCCGCGGAGCCGGACGCCGGCGCCGAGCCGGCGGTGGCCGCGGTCGACGCGGCCGAGTTCGCGGCGGCGATGGACTTCGGCGGCCTGGTGAGCGCCCGCCCCGCCGCCGTCGTCCGCCCGGCGAGCTCGGACGACGTGGCCAGCGCCATCCGCGCGGCGGCGCGCACCGCGCACCTGACCGTGGCCGCCCGCGGAAACGGCCACTCGGTGGCCGGGCAGGCCATGGCCCGCGGCGGCCTCGTCCTCGACATGCGCGCCCTCCCTCGCCGCATGCAGCTCGTCGTCGCCCCGTCCGGCGAGAAGTTCGCCGACGTCCCGGGCGGCGCGCTCTGGGAGGAGGTGCTCCACTGGGCAGTGTCGAAGCACGGCCTCGCCCCCGCCTCCTGGACGGACTACCTCCGCCTCACCGTCGGCGGCACGCTCTCCAACGGCGGCGTGAGCGGGCAATCCTTCCGGTACGGGCCCCAGGTGTCCAACGTCGCCCAGCTCGAGGTGGTGACCGGC GACGGCGAGTGCCATGTCTGCTCCCGCTCCGCCGACCCCGACCTC ]
[+] EMBL CB618338 [ ACATCCCCCTTTACAGAGAGAGCTTAGCTCTGCTCGGGCTCGGCTCAGCTCAGCTCAGCTGCAGAGAGAGAGAGAGAGAGACAGAGAGAAACAAGAAACGCAGCGGCGAGCCAAGATGATGCTCGCGTACATGGACCACGCCGCCGCGGCCGCGGAGCCGGACGCCGGCGCCGAGCCGGCGGTGGCCGCGGTCGACGCGGCCGAGTTCGCGGCGGCGATGGACTTCGGCGGCCTGGTGAGCGCCCGCCCCGCCGCCGTCGTCCGCCCGGCGAGCTCGGACGACGTGGCCAGCGCCATCCGCGCGGCGGCGCGCACCGCGCACCTGACCGTGGCCGCCCGCGGAAACGGCCACTCGGTGGCCGGGCAGGCCATGGCCCGCGGCGGCCTCGTCCTCGACATGCGCGCCCTCCCTCGCCGCATGCAGCTCGTCGTCGCCCCGTCCGGCGAGAAGTTCGCCGAAGTCCCGGGCGGCGCGCTCTGGGAGGAGGTGCTCCACTGGGCAGTGTCTAAGCACGGCCTCGCCCCCGCCTCCTGGACGGACTACCTCCGCCTCACCGTCGGCGGCACGCTCTCCAACGGCGGGGTGAGCGGGCAATCCTTCCGGTACGGGCCCCCAGTGTCCAACGTCGCCCAGGTCc ]
[+] EMBL CB673387 [ AGCTCGTCGCCTCCCCGTCCGGCGAGAATTTCGCCGACGTCCCGGGCGGCGCGCTCTGGGAGGAGGTGCTCCACTGGGCAGTGTAGAAGAACGGCCTCCCCCCCGCCTCCTGGACGGACTACCTCCGCCTCACCGTCGGAGGCACGCTCTCCTACGGTGGCGTGATCGGGCAATCCTTCCGGTACGGGCCCCAGGTGTCCAACGTCGCCCATCTCGAGGTGGTGACCGGC GACGGTGAGTGCCATGTCTGCTCCCGCTCCGCCGACCCCGATCTCTTCTTCTCCGTCCTCGGCGGCCTCTGCCAGTTCTGCGTCATCACCCGCGCCCTCATCCCTCTCTCCCCCGCGCCCCAAACAGTGCGGAGGACGCGGGTGGTGTACGCTAGCTTCGCGGACTACGCGGCGGACGCGGAGTGGCTGGTGACTCGGCCGCCGCACGAGGCGTTCGACTACGTGGAGGGATTCGCGTTCGTGCGGAGCGACGACCCGGTCAACGGCTGGCCAACGGTGCCCATCCCGGACGGCGCTCACTTCGACGCCTCCCTCCTCCCGGCCAACGCCGGCCCGGTGCTCTACTGCCTCGAGGTCGCCCTGTACCAACGCGGCGGCGGCGGAGACGGCGGTGGCGACGACATGGACAATAGGGTGGGGGAGATGA ]
[+] EMBL CB642078 [ atGGTGGTGACCGGCTGAATGCGAGTGCCATGTCTGCTCCCGCTCCGCCGACTCCGACCTCTTGTTCGCCGTCCTAGGCGGCCTCGGCCGGTTCGGCGTCATCACCCGCGCCCGCATCCCTCTCTCCCCCGCGCGCCAAACGGTGCGGTGGATGCGGGTGGTGTACGCCATCTTCGCGGACTACGCGGCGGACGCGGAGTGGCTGGTGACGCGGCCGCCGCACGAGGCGTTCGACTACGTGGAGGGATTCGCGTTCGTGCGGAGCGACGACCCGGTCAACGGCTGGCCAACGGTGCCCATCCCGGACGGCGCTCACTTCGACGCCTCCCTCCTCCCGGCCAACGCCGGCCCGGTGCTCTACTGCCTCGAGGTCGCCCTGTACCAACGCGGCGGCGGCGGAGACGGCGGTGGCGACGACATGGACAAGAGGGTGGGGGAGATGATGCGGCAGCTCAAGTACGTGCGGGGCCTGGAGTTCGCGGCGGGGGTCGGGTACGTGGACTTCCTCTCGCGCGTGA]
consensusID : consensus_13450#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 739 fasta sequence
[ATGCTCATCTACCCCATGCTCAAGTCCAAGTGGGACCCGGCCACGTCGGTGGCGCTGCCGAATGGCGAGATCTTCTACCTGGTGGCGCTGCTCCGATTCTGCCGGCCCTACCCCGGTGGTGGCCCGCCGGTGGACGAGCTGGTGGCGCAGAACAACGCAATCATTGACGCCTGCCGGTCCAACGGCTACGACTACAAGATATACTTCCCGAGCTACCACGCCCAGTCCGACTGGTCGCGCCACTTCGGCGCCAAGTGGAGCCGCTTCGTCGACCGCAAGGCACGCTACGACCCGCTCGCCATCCTCGCCCCCGGCCAGAACATCTTCGCCCGGACCCCCTCCTCCGTCGCCGCCGCCGCCGCCGTGATCGTGTAAGAGACGGATGATCGACGATGGTGATTATGCTGTTTGCTGGGTTAATTCTGGATGATGGCGACGATGAGGATGATGGTGATGATGGGGATGAAGAGGAGGGATCGGGACGAGCACAATGATGATGGTGATGATGATAGGGTCATTGTTAGGTACATTTGGGAGGGGTGCAAAAGAGGGAGGTTTCGGTTCGATGGGATGGACGACGTGTCAAGGGCAGTAGGGCCGGCGGCTGTGGCTCGGCTCTGCAGCAGGAGTTGCAAAAGGGAAAACGAAAGATGTAAACGTTTTCCTGCTTTGATTCTTTTTCTT-CTCATT-CCCCCTGGTGAGATTGGGACGCCTTTCGACGGTGACACA-AAAAAAAAGG]
[-] EMBL CB673388 [ATGCTCATCTACCCCATGCTCAAGTCCAAGTGGGACCCGGCCACGTCGGTGGCGCTGCCGAATGGCGAGATCTTCTACCTGGTGGCGCTGCTCCGATTCTGCCGGCCCTACCCCGGTGGTGGCCCGCCGGTGGACGAGCTGGTGGCGCAGAACAACGCAATCATTGACGCCTGCCGGTCCAACGGCTACGACTACAAGATATACTTCCCGAGCTACCACGCCCAGTCCGACTGGTCGCGCCACTTCGGCGCCAAGTGGAGCCGCTTCGTCGACCGCAAGGCACGCTACGACCCGCTCGCCATCCTCGCCCCCGGCCAGAACATCTTCGCCCGGACCCCCTCCTCCGTCGCCGCCGCCGCCGCCGTGATCGTGTAAGAGACGGATGATCGACGATGGTGATTATGCTGTTTGCTGGGTTAATTCTGGATGATGGCGACGATGAGGATGATGGTGATGATGGGGATGAAGAGGAGGGATCGGGACGAGCACAATGATGATGGTGATGATGATAGGGTCATTGTTAGGTACATTTGGGAGGGGTGCAAAAGAGGGAGGTTTCGGTTCGATGGGATGGACGACGTGTCAAGGGCAGTAGGGCCGGCGGCTGTGGCTCGGCTCTGCAGCAGGAGTTGCAAAAGGGAAAACGAAAGATGTAAACGTTTTCCTGCTTTGATTCTTTTTCTT CTCATT CCCCCTGGTGAGATTGGGACGCCTTTCGACGGTGACACA AAAAAAAAG ]
[-] EMBL CB644659 [ GCTCATCTACCCCATGCTCAAGTCCAAGTGGGACCCGGCCACGTCGGTGGCGCTGCCGAATGGCGAGATCTTCTACCTGGTGGCGCTGCTCCGATTCTGCCGGCCCTACCCCGGTGGTGGCCCGCCGGTGGACGAGCTGGTGGCGCAGAACAACGCAATCATTGACGCCTGCCGGTCCAACGGCTACGACTACAAGATATACTTCCCGAGCTACCACGCCCAGTCCGACTGGTCGCGCCACTTCGGCGCCAAGTGGAGCCGCTTCGTCGACCGCAAGGCACGCTACGACCCGCTCGCCATCCTCGCCCCCGGCCAGAACATCTTCGCCCGGACCCCCTCCTCCGTCGCCGCCGCCGCCGCCGTGATCGTGTAAGAGACGGATGATCGACGATGGTGATTATGCTGTTTGCTGGGTTAATTCTGGATGATGGCGACGATGAGGATGATGGTGATGATGGGGATGAAGAGGAGGGATCGGGACGAGCACAATGATGATGGTGATGATGATAGGGTCATTGTTAGGTACATTTGGGAGGGGTGCAAAAGAGGGAGGTTTCGGTTCGATGGGATGGACGACGTGTCAAGGGCAGTAGGGCCGGCGGCTGTGGCTCGGCTCTGCAGCAGGAGTTGCAAAAGGGAAAACGAAAGATGTAAACGTTTTCCTGCTTTGATTCTTTTTCTT CTCATT CCCCCTGG GAGATTGGGACGCCTTTCGA ]
[-] EMBL CB618339 [ CAAGTCCAAGTGGGACCCGGCCACGTCGGTGGCGCTGCCGGATGGCGAGATCTTCTACCTGGTGGCGCTGCTCCGATTCTGCCGGCCCTACCCCGGTGGTGGCCCGCCGGTGGACGAGCTGGTGGCGCAGAACAACGCAATCATTGACGCCTGCCGGTCCAACGGCTACGACTACAAGATATACTTCCCGAGCTACCACGCCCAGTCCGACTGGTCGCGCCACTTCGGCGCCAAGTGGAGCCGCTTCGTCGACCGCAAGGCACGCTACGACCCGCTCGCCATCCTCGCCCCCGGCCAGAACATCTTCGCCCGGACCCCCTCCTCCGTCGCCGCCGCCGCCGCCGTGATCGTGTAAGAGACGGATGATCGACGATGGTGATTATGCTGTTTGCTGGGTTAGTTCTGGATGATGGCGACGATGAGGATGATGGTGATGATGGGGATGAAGAGGAGGGATCGGGACGAGCACAATGATGATGGTGATGATGATAGGGTCATTGTTAGGTACATTTGGGAGGGGTGCAAAAGAGGGGGGTTTCGGTTCGATGGGATGGACGACGTGTCAAGGGCAGTAGGTCCGGCGGCTGTGGCTAGGCTCTGCAGCAGGAGTTGCAAAAGGGGAAACGAAAGATGTAAACGTTTTCCTGCTCTGATTCTTTTTCTT CTCATT CCCCCAGGGGAGATTGGGATGCCTTTCGACGGTGACACACACAAAAAAGG]
[-] EMBL CB677088 [ TGGCGAGATCTTCTACCTGGTGGCGCTGCTCCGATTCTGCCGGCCCTACCCCGGTGGTGGCCCGCCGGTGGACGAGCTGGTGGCGCAGAACAACGCAATCATTGACGCCTGCCGGTCCAACGGCTACGACTACAAGATATACTTCCCGAGCTACCACGCCCAGTCCGACTGGTCGCGCCACTTCGGCGCCAAGTGGAGCCGCTTCGTCGACCGCAAGGCACGGTACGACCCGCTCGCCATCCTCGCCCCCGGCCAGAACATCTTCGCCCGGACCCCCTCCTCCGTCGCCGCCGCCGCCGCCGTGATCGTGTAAGAGACGGATGATCGACGATGGTGATTATGCTGTTTGCTGGGTTAATTCTGGATGATGGCGACGATGAGGATGATGGTGATGATGGGGATGAAGAGGAGGGATCGGGACGAGCACAATGATGATGGTGATGATGATAGGGTCATTGTTAGGTACATTTGGGAGGGGTGCAAAAGAGGGAGGTTTCGGTTCGATGGGATGGACGACGTGTCAAGGGCAGTAGGGCCGGCGGCTGTGGCTCGGCTCTGCAGCAGGAGTTGCAAAAGGGAAAACGAAAGATGTAAACGTTTTCCTGCTTTGATTCTTTTTCTT CTCATT CCCCCTGGTGAGATTGGGACGCCTTTCGA ]
[-] EMBL CB637294 [ tCCGTGATCGTGTAAGAGACGGATGATCGACGATGGTGATTATGCTGTTTGCTGGGTTAATTCTGGATGATGGCGACGATGAGGATGATGGTGATGATGGGGATGAAGAGGAGGGATCGGGACGAGCACAATGATGATGGTGATGATGATAGGGTCATTGTTAGGTACATTTGGGAGGGGTGCAAAAGAGGGAGGTTTCGGTTCAATGGGATGGACGACGTGTCAAGGGCAGTAGGGCCGGCGGCTGTGGCTCGGCTCTGCAGCAGGAGTTGCAAAAGGGAAAACGAAAGATGTAAACGTTTTCCTGCTTTGATTCTTTTTCTTNCTCATTCCCCCCTGGTGAGATTGGGACG CTTTCG ]
[-] EMBL CB650215 [ TGGATGATGGCGCCCATGAGGATGATGGTGATGATGGGGATGAAGAGGAGGGATCGGGCCGAGCCCAATGATGATGGTGATGATGATAGGGTCATTGTTAGGTCCATTTGGGAGGGGTGCAAAAGAGGGAGGTTTCGGTTCGATGGGATGGCTCACCTGTCAAGGGCAGTCGGGCCGGCGGCCGTGGCTCGGTTTTGCAGCAGGAGTTGCAAAAGGGAAAACGAAAGATGTAACCGTTTTCCTGCTTAGATTCTTTTTCTT CTCATT CCCCCTGGCGAGATTGGGA ]
consensusID : consensus_13450#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 376 fasta sequence
[ATCGTGGTAAGAGGACGGATGATCGACGATGTGATTATCCTGTTTCTGGTTATTCTGGATGATGGCGACGATGAGGATGATGTGATGATGGGGATGAAGAGGAGGGATCAGGGACAGAGCACACATGATGATGGTGATGATGATAGGGTCATTGTTAGGTACATTTGGGAGGGGTGCAAAAAGAGGGGGTTTCAGGTTCGATGGGATGGACAGACGTGTCAAGGCAGTAGGTCCAGGCAGGCTGTGGCTAGGCTCTGCACACGGAGTTGCACAAAGGGGAAACAGAAAGATGTAAACGTTTTCCTGCTCTGATTCTTTTTCTTCTCATTCCACCCTGGTGAGATTGGGATCCATTTCAGACAGGTGAAAAAAAAAA]
[+] EMBL BI801477 [ATCGTGGTAAGAGGACGGATGATCGACGATGTGATTATCCTGTTTCTGGTTATTCTGGATGATGGCGACGATGAGGATGATGTGATGATGGGGATGAAGAGGAGGGATCAGGGACAGAGCACACATGATGATGGTGATGATGATAGGGTCATTGTTAGGTACATTTGGGAGGGGTGCAAAAAGAGGGGGTTTCAGGTTCGATGGGATGGACAGACGTGTCAAGGCAGTAGGTCCAGGCAGGCTGTGGCTAGGCTCTGCACACGGAGTTGCACAAAGGGGAAACAGAAAGATGTAAACGTTTTCCTGCTCTGATTCTTTTTCTTCTCATTCCACCCTGGTGAGATTGGGATCCATTTCAGACAGGTGAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13450#2 ------------------------------------------------------------
consensus_13450#3 ------------------------------------------------------------
consensus_13450#0 CGAGTAGTAATTCCCACGCGCGGCGGGGGGCATTCCCGTACATGGTGTACTTTTCTGGGC 60
consensus_13450#1 ------------------------------------------------------------
consensus_13450#2 ------------------------------------------------------------
consensus_13450#3 ------------------------------------------------------------
consensus_13450#0 GGATGTCTGCCTCCGTCGTGTATCCCCCCCGCTGGATTCTGTGACGGGTGCGTGCTCTGC 120
consensus_13450#1 ------------------------------------------------------------
consensus_13450#2 ------------------------------------------------------------
consensus_13450#3 ------------------------------------------------------------
consensus_13450#0 TCCTCCCGCGCGCGTGCCGCCAAACCACACACACCCCCTCCCCTGCCCCCACCCACACCC 180
consensus_13450#1 ------------------------------------------------------------
consensus_13450#2 ------------------------------------------------------------
consensus_13450#3 ------------------------------------------------------------
consensus_13450#0 GCCGGTCGCTGCCTCGCTCGCGCCCAAGCCGGATCACGCCTCGATCTCCCGTGAGCCGGG 240
consensus_13450#1 ------------------------------------------------------------
consensus_13450#2 ------------------------------------------------------------
consensus_13450#3 ------------------------------------------------------------
consensus_13450#0 GCGTGCGTTGGGCGTTGGCGTACAATGCGGCTCGCGCTCGCTGCCGCGCCCGTGACGACG 300
consensus_13450#1 ------------------------------------------------------------
consensus_13450#2 ------------------------------------------------------------
consensus_13450#3 ------------------------------------------------------------
consensus_13450#0 CGGATCCCCTGTTTTGTACACGCGCGGGCGCACGCTTTGTCGCGGTGGTGACGCGGGCTG 360
consensus_13450#1 ------------------------------------------------------------
consensus_13450#2 ------------------------------------------------------------
consensus_13450#3 ------------------------------------------------------------
consensus_13450#0 CCGTTTCTCTGTTTCATTTGGGAGGGGGGGGTGTCGTCTCGTGTCGTGCTGCTGATGGCG 420
consensus_13450#1 ------------------------------------------------------------
consensus_13450#2 ------------------------------------------------------------
consensus_13450#3 ------------------------------------------------------------
consensus_13450#0 TGTGTGTGTGTACGTGTGGTTGGTTTGCAGAGGGTGGGGGAGATGATGCGGCAGCTCAAG 480
consensus_13450#1 ------------------------------------------------------------
consensus_13450#2 ------------------------------------------------------------
consensus_13450#3 ------------------------------------------------------------
consensus_13450#0 TACGTGCGGGGCCTGGAGTTCGCGGCGGGGGTCGGGTACGTGGACTTCCTCTCGCGCGTG 540
consensus_13450#1 ------------------------------------------------------------
consensus_13450#2 ------------------------------------------------------------
consensus_13450#3 ------------------------------------------------------------
consensus_13450#0 AACCGGGTGGAGGACGAGGCCCGCCGCAACGGGAGCTGGGCCGCGCCGCACCCGTGGCTC 600
consensus_13450#1 -------------------------------------AGCGAGCCGCTGCACAGTGACAT 23
consensus_13450#2 ------------------------------------------------------------
consensus_13450#3 ------------------------------------------------------------
consensus_13450#0 AACCTCTTCATCTCCTCACGCGACATCGCCGCCTTCGACCGCGCCGTCCTCAACGGCATG 660
consensus_13450#1 CACGGTTACAGAGAGAGCTTAGCTCTGCTCGGGCTCGGCTCAGCTCAGCTCAGCTGCAGA 83
consensus_13450#2 ------------------------------------------------------------
consensus_13450#3 ------------------------------------------------------------
consensus_13450#0 CTCGCCGACGGCGTCGACGGGCCCATGCTCATCTACCCCATGCTCAAGTCCAAGTGAGTA 720
consensus_13450#1 GAGAGAGAGACAGAGAAACAAGAAACGCAGCGGCGAGCCAAGATGATGCTCGCGTACATG 143
consensus_13450#2 ------------------------------------------------------------
consensus_13450#3 ------------------------------------------------------------
consensus_13450#0 CTACTAGTATACTATTTGTTTATCTCCTGGGATGGGTTTTTGTTTAATCGGATAATTAAT 780
consensus_13450#1 GACCACGCCGCCGCGGCCGCGGAGCCGGACGCCGGCGCCGAGCCGGCGGTGGCCGCGGTC 203
consensus_13450#2 ------------------------------------------------------------
consensus_13450#3 ------------------------------------------------------------
consensus_13450#0 TAGCCCATTTGGTCCGTACTTATAATACGACGGGGGTTTCTGGTTGTCTTCCATCCCGTT 840
consensus_13450#1 GACGCGGCCGAGTTCGCGGCGGCGATGGACTTCGGCGGCCTGGTGAGCGCCCGCCCCGCC 263
consensus_13450#2 ------------------------------------------------------------
consensus_13450#3 ------------------------------------------------------------
consensus_13450#0 CTGTTTTGGATTTAGCCTTGTCATATATCTGCCGCCATTAGGATTTAGCAGCCACTAACC 900
consensus_13450#1 GCCGTCGTCCGCCCGGCGAGCTCGGACGACGTGGCCAGCGCCATCCGCGCGGCGGCGCGC 323
consensus_13450#2 ------------------------------------------------------------
consensus_13450#3 ------------------------------------------------------------
consensus_13450#0 CCAGGTTGCTATGATTGATGTAAATTCCTTTTTCTTCTTTTTTTTCTCTCTCTCTCTGTC 960
consensus_13450#1 ACCGCGCACC----TGACCGTGGCCGCCCGCGGAAACGGCCACTCGGTGGCCGGGCAGGC 379
consensus_13450#2 -----------------------------------------------------ATGCTCA 7
consensus_13450#3 ------------------------------------------------------------
consensus_13450#0 TCAGTTTGCCGCCAATGCACGCACGCACGCACACGAGCTGCTAATTAAAACGCCCCCTAA 1020
consensus_13450#1 CATGGCCCGCGGCGGCCTCGTCCTCGACATGCGCGCCCTCCCTCGCCGCATGCA-GCTCG 438
consensus_13450#2 TCTACCCCATGCTCAAGTCCAAGTGGGACCCGGCCACGTCGGTGGCGCTGCCGAATGGCG 67
consensus_13450#3 ------------------------------------------------------------
consensus_13450#0 TTAACACGTTTGCGTGTGACAGGTGGGACCCGGCCACGTCGGTGGCGCTGCCGAATGGCG 1080
consensus_13450#1 TCGTCGCCCCGTCCGGCGAGAAGTTCGCCGACGTCCCGGGCGGCGCGCTCTGGGAGGAGG 498
consensus_13450#2 AGATCTTCTACCTGGTGGCGCTGCTCCGATTCTGCCGGCCCTACCCCGGTGGTGGCCCGC 127
consensus_13450#3 ------------------------------------------------------------
consensus_13450#0 AGATCTTCTACCTGGTGGCGCTGCTCCGATTCTGCCGGCCCTACCCCGGTGGTGGCCCGC 1140
consensus_13450#1 TGCTCCACTGGGCAGTGTCGAAGCACGGCCTC-GCCCCCGCCTCCTGGACGGACTACCTC 557
consensus_13450#2 CGGTGGACGAGCTGGTGGCGCAGAACAACGCAATCATTGACGCCTGCCGGTCCAACGGCT 187
consensus_13450#3 ------------------------------------------------------------
consensus_13450#0 CGGTGGACGAGCTGGTGGCGCAGAACAACGCAATCATTGACGCCTGCCGGTCCAACGGCT 1200
consensus_13450#1 CGCCTCACC-GTCGGCGGCAC-GCTCTCCAACGGCGGCGTGAGCGGGCAATCCTTCCGGT 615
consensus_13450#2 ACGACTACAAGATATACTTCCCGAGCTACCACGCCCAGTCCGACTGGTCGCGCCACTTCG 247
consensus_13450#3 ------------------------------------------------------------
consensus_13450#0 ACGACTACAAGATATACTTCCCGAGCTACCACGCCCAGTCCGACTGGTCGCGCCACTTCG 1260
consensus_13450#1 ACGGGCCCCAGGTGTC---------CAACGTCGCCCAGCTCGAGGTGGTGACCGGCGACG 666
consensus_13450#2 GCGCCAAGTGGAGCCGCTTCGTCGACCGCAAGGCACGCTACGACCCGCTCGCCATCCTCG 307
consensus_13450#3 ------------------------------------------------------------
consensus_13450#0 GCGCCAAGTGGAGCCGCTTCGTCGACCGCAAGGCACGCTACGACCCGCTCGCCATCCTCG 1320
consensus_13450#1 GCGAGTGCCATGTCTGCTCCCGCTCCGCCGACCCCGACCTCTTCTTCTCCGTCCTCGGCG 726
consensus_13450#2 CCCCCGGCCAGAACATCTTCGCCCGGACCCCCTCCTCCGTCGCCGCCGCCGCCGCCGTGA 367
consensus_13450#3 -----------------------------------------------------------A 1
consensus_13450#0 CCCCCGGCCAGAACATCTTCGCCCGGACCCCCTCCTCCGTCGCCGCCGCCGCCGCCGTGA 1380
consensus_13450#1 GCCTCTGCCAGTTCTGCGTCATCACCCGCGCCCTCATCCCTCTCTCCCCCGCGCCCCAAA 786
*
consensus_13450#2 TCGTG-TAAGAG-ACGGATGATCGACGATGGTGATTATGCTGTTTGCTGGGTTAATTCTG 425
consensus_13450#3 TCGTGGTAAGAGGACGGATGATCGACGATG-TGATTATCCTGTTT-CTGGTT--ATTCTG 57
consensus_13450#0 TCGTG-TAAGAG-ACGGATGATCGACGATGGTGATTATGCTGTTTGCTGGGTTAATTCTG 1438
consensus_13450#1 CAGTGCGGAGGACGCGGGTGGTGTACGCTA---GCTTCGCGGACTACGCGGCGGACGCGG 843
*** ** *** ** * *** * * * * * * * * * *
consensus_13450#2 GATGA-TGGCGACGATGAGGATGATGGTGATGATGGGGATGAAGAGGAGGGATC-GGGAC 483
consensus_13450#3 GATGA-TGGCGACGATGAGGATGATG-TGATGATGGGGATGAAGAGGAGGGATCAGGGAC 115
consensus_13450#0 GATGA-TGGCGACGATGAGGATGATGGTGATGATGGGGATGAAGAGGAGGGATC-GGGAC 1496
consensus_13450#1 AGTGGCTGGTGACTCGGCCGCCGCACGAGGCGTTCG--ACTACGTGGAGGGATTCGCGTT 901
** *** *** * * * * * * * * * * ******** * *
consensus_13450#2 -GAGCACA-ATGATGATGGTGATGATGATAGGGTCATTGTTAGGTACATTTGGGAGGG-G 540
consensus_13450#3 AGAGCACACATGATGATGGTGATGATGATAGGGTCATTGTTAGGTACATTTGGGAGGG-G 174
consensus_13450#0 -GAGCACA-ATGATGATGGTGATGATGATAGGGTCATTGTTAGGTACATTTGGGAGGG-G 1553
consensus_13450#1 CGTGCGGA-GCGACGACCCGGTCAACGGCTGGCCAACGGT---GCCCATCCCGGACGGCG 957
* ** * ** ** * * * ** * ** * *** *** ** *
consensus_13450#2 TGCAAAAGAGGGAGGTTTC-GGTTCGATGG--GATGGAC-GACGTGTCAAGGGCAGTAGG 596
consensus_13450#3 TGCAAAAAGAGGGGGTTTCAGGTTCGATGG--GATGGACAGACGTGTCAAGG-CAGTAGG 231
consensus_13450#0 TGCAAAAGAGGGAGGTTTC-GGTTCGATGG--GATGGAC-GACGTGTCAAGGGCAGTAGG 1609
consensus_13450#1 CTCACTTCGACGCCTCCCTCCTCCCGGCCAACGCCGGCCCGGTGCTCTACTGCCTCGAGG 1017
** * ** * ** * * * * * * ***
consensus_13450#2 GCCGGC--GGCTGTGGCT-CGGCTCTGCAGCAGG-AGTTGCA---AAAGGGAAAAC-GAA 648
consensus_13450#3 TCCAGGCAGGCTGTGGCT-AGGCTCTGCACACGG-AGTTGCAC--AAAGGGGAAACAGAA 287
consensus_13450#0 GCCGGC--GGCTGTGGCT-CGGCTCTGCAGCAGG-AGTTGCA---AAAGGGAAAAC-GAA 1661
consensus_13450#1 TCGCCCTGTACCAACGCGGCGGCGGCGGAGACGGCGGTGGCGACGACATGGACAATAGGG 1077
* * ** *** * * ** ** ** * * ** ** *
consensus_13450#2 AGATGTAAACGTTTTCCTGCTTTGATTCTTTTTCTTCTCATTCC-CCCTGGTGAGATTGG 707
consensus_13450#3 AGATGTAAACGTTTTCCTGCTCTGATTCTTTTTCTTCTCATTCCACCCTGGTGAGATTGG 347
consensus_13450#0 AGATGTAAACGTTTTCCTGCTTTGATTCT------------------------------- 1690
consensus_13450#1 TGGGGGAGATGATGCGGCAGCTCAAGTACGTGCGGGGCCTGGAGTTCGCGGCGGGGGTCG 1137
* * * * * * * *
consensus_13450#2 GACGCCTTTCGACGGTGACACAAAAAAAAAGG 739
consensus_13450#3 GATCCATTTCAGACAGGTGAAAAAAAAAA--- 376
consensus_13450#0 --------------------------------
consensus_13450#1 GGTACGTGGACTTCCTCTCGCGCGTGA----- 1164
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||