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Oryza sativa
cluster # 13455 cluster # 13455       Sequences # 13       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13455#0 length = 2215 sequences # 12  
 consensus_13455#1 length = 646 sequences # 1  
consensusID : consensus_13455#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 12
consensus length = 2215
fasta sequence 
                              [TCACCTGCTCATTTTTTATTTCCCAAATTATAAAACCTTTTCTTTTTTGTTCCCCAAAGATTACGTGCTAGTAGGGGCGTTAAGAAAAAGGAAAAGAAAGAGAAGGAAAAAAAAAACGGAGAGAGAAAAATTGGAGAGGCGGGCGAGTTAGGGGAATTTACGTAGGAGACAAGCGAAATCCCTAAATTTTCTCTCCTCTCCTCGCGAGTTGTTTTGAGTGAGTTTCTGCGAGTGCTCTTGAGCTTCCATCTTTCCGCATAAGGCTTTGCAAGCTTTGCTCTAGCC-TTTTTTTTTTTGTTCAGATTATTTTCTTGCGGTTTGTTCTTAAGTACTCGCTAGTGTCCCTAATTTCCTGGTAATTTCTTGGTAATTTTTGGCTGCTTACTTTGCTCGAGCTGGGATCTGTGTTTCAGTGCTCACTTGCTAAATCCGAACCAAATTAAACCTTGGATTTTAAAACTCCTTCCAGCTATTTTTCCGTTTTTATTTGGGAAATTGTGGGTTTACCATTTCTTCCTCCGATTTTCTTTTCCATTTTCTCCCCTCATTTGAGCTTCCTTCTCACCCATTCCAAGAAATCACCATCCTTCCGCTGTAAAATCGTTGAAAAAAAAATTGTTCCACAGCTTTGAGCAGCGCGGGGTTTATGGTGGTTTTTGCAGCTCTCGTCTTCTTCCTCAGCTCGCCTTGAAATTTCGGTCCAAGAAATCACTGAGCTGAGTGAGCTGCTGAGCTGAGCTTCTGCGAGAGAAGGTGTGGGAATGATGGAGGTGACTCAGGTGAGGGCGTCGTCGGAGATGGCGGGAGGAAGGGAGCCGTTCGTGCTGCCCAAGAGCCCGCCGGCGGCGGCGCCTGCGCCGCCGCCGCCGTCGTCCGGCGGCATGCAGAGCGTGCGCATGGCGTACACGGCGGACGGCACGCCCATCTTCGCTCCGGTGAACTCCGCCCCGGCCCCGGCCCCGGCGGCGACGTACCCGCCCGCAGGAGGCAATGGCGCGGCGGCTCTCGACGCCGGCGAGCCGGTGGTCAAGAAGAAGCGTGGCCGGCCAAGGAAGTACGGCCCCGACGGCTCCATGTCGCTGGCATTGGTGCCCGTGTCCACCGCGGCGGTGGCGGCCTCCGGGCCTTTCTCGCCGGCGGCTGCCGCGAAGTCGCCGGACGCCGTGTCGTCGGCGCCGCCGCCGGGGGCGAAGAAGAGGGGGCGGCCAAAGGGCTCCACGAACAAGAAGCACGTGCCCTCTTTCGGAATTGGAGATATCGGGTCAGCAGGAGCTGGATTCACACCTCATGTTATTTTTGTTAAAGCTGGAGAGGATGTATCTGCAAAGATCATGTCATTCTCCCAGCATGGAACTCGTGGAGTATGCGTTCTGTCAGCAAACGGCGCCATATCAAATGTGACACTTCGGCAAGCTGCTACTTCCGGTGGAACAGTAACATACGAGGGACGATTTGAGATACTGTCGCTGTCCGGTTCATTCCTTCTATCAGAGAATGGAGGCCATCGTAGTCGAACTGGTGGGCTCAGTGTTTCTCTAGCAGGCCCTGATGGTCGCGTCTTGGGTGGTGGAGTTGCTGGACTTCTGACAGCTGCTTCACCAGTGCAGATTGTGGTGGGAAGCTTCAACACCGAAGGGAAAAAGGGGCCAAAGCTGCATGC-TCCTTCA-GA-CCCAATGTCTGCA-CCG-CTAA-A-GATGGTG--CCGATGAGCGGGACGGGGCCAAGCAGCCCGCCATCAAGGGGCACATTGAGTGAATCATCGGGCGGCCCGGGGAGCCCGCTGAACCAAGGTGTCACGGCCAGCAACCATGGCCAGCCAGGGCTACCCAGCTTATCCTGGAAGTGAGCT-CCTCCTCC-TCATCAT-C-ATCAGTGACCAGACCTTGGTCCCGTCTGACCGCCGTAGAACTTGCGAAAGGAAATGTCGTGGCGGTGGTACTCGAGGTACTCCGGTGCGACGCCATGGATCCTAACTAGCCCCCCTATCTAGTGTAATGTCTGAACCTGAATCAGGGAAGAAAACTGTAGCCGTTGCATCTCTAGCTAGCTCTTCTGGTGTAGGTGCTGTTACTATTGGAGACTAGACTCAATGTGTTATTTAGGTGGTTAAATTGTTTTTTTATCTTCCAGACACCGATGAAAAAGCTCATTGCTTCTATGTAACTATGTTGGCATGTTGCGGTTAGCTTGTGGCTCAGTTCTTTAGCGGCCTGGTAAAAAAAA]

[+] EMBL AK101825             [TCACCTGCTCATTTTTTATTTCCCAAATTATAAAACCTTTTCTTTTTTGTTCCCCAAAGATTACGTGCTAGTAGGGGCGTTAAGAAAAAGGAAAAGAAAGAGAAGGAAAAAAAAAACGGAGAGAGAAAAATTGGAGAGGCGGGCGAGTTAGGGGAATTTACGTAGGAGACAAGCGAAATCCCTAAATTTTCTCTCCTCTCCTCGCGAGTTGTTTTGAGTGAGTTTCTGCGAGTGCTCTTGAGCTTCCATCTTTCCGCATAAGGCTTTGCAAGCTTTGCTCTAGCC  TTTTTTTTTTGTTCAGATTATTTTCTTGCGGTTTGTTCTTAAGTACTCGCTAGTGTCCCTAATTTCCTGGTAATTTCTTGGTAATTTTTGGCTGCTTACTTTGCTCGAGCTGGGATCTGTGTTTCAGTGCTCACTTGCTAAATCCGAACCAAATTAAACCTTGGATTTTAAAACTCCTTCCAGCTATTTTTCCGTTTTTATTTGGGAAATTGTGGGTTTACCATTTCTTCCTCCGATTTTCTTTTCCATTTTCTCCCCTCATTTGAGCTTCCTTCTCACCCATTCCAAGAAATCACCATCCTTCCGCTGTAAAATCGTTGAAAAAAAAATTGTTCCACAGCTTTGAGCAGCGCGGGGTTTATGGTGGTTTTTGCAGCTCTCGTCTTCTTCCTCAGCTCGCCTTGAAATTTCGGTCCAAGAAATCACTGAGCTGAGTGAGCTGCTGAGCTGAGCTTCTGCGAGAGAAGGTGTGGGAATGATGGAGGTGACTCAGGTGAGGGCGTCGTCGGAGATGGCGGGAGGAAGGGAGCCGTTCGTGCTGCCCAAGAGCCCGCCGGCGGCGGCGCCTGCGCCGCCGCCGCCGTCGTCCGGCGGCATGCAGAGCGTGCGCATGGCGTACACGGCGGACGGCACGCCCATCTTCGCTCCGGTGAACTCCGCCCCGGCCCCGGCCCCGGCGGCGACGTACCCGCCCGCAGGAGGCAATGGCGCGGCGGCTCTCGACGCCGGCGAGCCGGTGGTCAAGAAGAAGCGTGGCCGGCCAAGGAAGTACGGCCCCGACGGCTCCATGTCGCTGGCATTGGTGCCCGTGTCCACCGCGGCGGTGGCGGCCTCCGGGCCTTTCTCGCCGGCGGCTGCCGCGAAGTCGCCGGACGCCGTGTCGTCGGCGCCGCCGCCGGGGGCGAAGAAGAGGGGGCGGCCAAAGGGCTCCACGAACAAGAAGCACGTGCCCTCTTTCGGAATTGGAGATATCGGGTCAGCAGGAGCTGGATTCACACCTCATGTTATTTTTGTTAAAGCTGGAGAGGATGTATCTGCAAAGATCATGTCATTCTCCCAGCATGGAACTCGTGGAGTATGCGTTCTGTCAGCAAACGGCGCCATATCAAATGTGACACTTCGGCAAGCTGCTACTTCCGGTGGAACAGTAACATACGAGGGACGATTTGAGATACTGTCGCTGTCCGGTTCATTCCTTCTATCAGAGAATGGAGGCCATCGTAGTCGAACTGGTGGGCTCAGTGTTTCTCTAGCAGGCCCTGATGGTCGCGTCTTGGGTGGTGGAGTTGCTGGACTTCTGACAGCTGCTTCACCAGTGCAGATTGTGGTGGGAAGCTTCAACACCGAAGGGAAAAAGGGGCCAAAGCTGCAAGC TCCTTCA GA CCCAATGTCTGCA CCG CTAA A GATGGTG  CCGATGAGCGGGACGGGGCCAAGCAGCCCGCCATCAAGGGGCACATTGAGTGAATCATCGGGCGGCCCGGGGAGCCCGCTGAACCAAGGTGTCACGGCCAGCAACCATGGCCAGCCAGGGCTACCCAGCTTATCCTGGAAGTGAGCT CCTCCTCC TCATCAT C ATCAGTGACCAGACCTTGGTCCCGTCTGACCGCCGTAGAACTTGCGAAAGGAAATGTCGTGGCGGTGGTACTCGAGGTACTCCGGTGCGACGCCATGGATCCTAACTAGCCCCCCTATCTAGTGTAATGTCTGAACCTGAATCAGGGAAGAAAACTGTAGCCGTTGCATCTCTAGCTAGCTCTTCTGGTGTAGGTGCTGTTACTATTGGAGACTAGACTCAATGTGTTATTTAGGTGGTTAAATTGTTTTTTTATCTTCCAGACACCGATGAAAAAGCTCATTGCTTCTATGTAACTATGTTGGCA                                                 ]
[+] EMBL CB672070             [                                                                                                   GAGAAGGAATAAAAAAACGGAGAGAGAAAAATTGGAGAGGCGGGCGAGTTAGGGGAATTTACGTAGGAGACAAGCGAAATCCCTAAATTTTCTCTCCTCTCCTCGCGAGTTGTTTTGAGTGAGTTTCTGCGAGTGCTCTTGAGCTTCCATCTTTCCGCATAAGGCTTTGCAAGCTTTGCTCTAGCCTTTTTTTTTTTTGTTCAGATTATTTTCTTGCGGTTTGTTCTTAAGTACTCGCTAGTGTCCCTAATTTCCTGGTAATTTCTTGGTAATTTTTGGCTGCTTACTTTGCTCGAGCTGGGATCTGTGTTTCAGTGCTCACTTGCTAAATCCGAACCAAATTAAACCTTGGATTTTAAAACTCCTTCCAGCTATTTTTCCGTTTTTATTTGGGAAATTGTGGGTTTACCATTTCTTCCTCCGATTTTCTTTTCCATTTTCTCCCCTCATTTGAGCTTCCTTCTCACCCATTCCAAGAAATCACCATCCTTCCGCTGTAAAATCGTTGAAAAAAAAATTGTTCCACAGCTTTGAGCAGCGCGGGGTTTATGGTGGTTTTTGCAGCTCTCGTCTTCTTCCTCAGCTCGCCTTGAAATTTCGGTCCAAGAAATCACTGAGCTGAGTGAGCTGCTGAGCTGAGCTTCTGCGAGAGAAGGTGTGGGAATGATGGAGGTGACTCAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL AK105419             [                                                                                                                                                                                                                                                                                        TAGCC TTTTTTTTTTTGTTCAGATTATTTTCTTGCGGTTTGTTCTTAAGTACTCGCTAGTGTCCCTAATTTCCTGGTAATTTCTTGGTAATTTTTGGCTGCTTACTTTGCTCGAGCTGGGATCTGTGTTTCAGTGCTCACTTGCTAAATCCGAACCAAATTAAACCTTGGATTTTAAAACTCCTTCCAGCTATTTTTCCGTTTTTATTTGGGAAATTGTGGGTTTACCATTTCTTCCTCCGATTTTCTTTTCCATTTTCTCCCCTCATTTGAGCTTCCTTCTCACCCATTCCAAGAAATCACCATCCTTCCGCTGTAAAATCGTTGAAAAAAAAATTGTTCCACAGCTTTGAGCAGCGCGGGGTTTATGGTGGTTTTTGCAGCTCTCGTCTTCTTCCTCAGCTCGCCTTGAAATTTCGGTCCAAGAAATCACTGAGCTGAGTGAGCTGCTGAGCTGAGCTTCTGCGAGAGAAGGTGTGGGAATGATGGAGGTGACTCAGGTGAGGGCGTCGTCGGAGATGGCGGGAGGAAGGGAGCCGTTCGTGCTGCCCAAGAGCCCGCCGGCGGCGGCGCCTGCGCCGCCGCCGCCGTCGTCCGGCGGCATGCAGAGCGTGCGCATGGCGTACACGGCGGACGGCACGCCCATCTTCGCTCCGGTGAACTCCGCCCCGGCCCCGGCCCCGGCGGCGACGTACCCGCCCGCAGGAGGCAATGGCGCGGCGGCTCTCGACGCCGGCGAGCCGGTGGTCAAGAAGAAGCGTGGCCGGCCAAGGAAGTACGGCCCCGACGGCTCCATGTCGCTGGCATTGGTGCCCGTGTCCACCGCGGCGGTGGCGGCCTCCGGGCCTTTCTCGCCGGCGGCTGCCGCGAAGTCGCCGGACGCCGTGTCGTCGGCGCCGCCGCCGGGGGCGAAGAAGAGGGGGCGGCCAAAGGGCTCCACGAACAAGAAGCACGTGCCCTCTTTCGGAATTGGAGATATCGGGTCAGCAGGAGCTGGATTCACACCTCATGTTATTTTTGTTAAAGCTGGAGAGGATGTATCTGCAAAGATCATGTCATTCTCCCAGCATGGAACTCGTGGAGTATGCGTTCTGTCAGCAAACGGCGCCATATCAAATGTGACACTTCGGCAAGCTGCTACTTCCGGTGGAACAGTAACATACGAGGGACGATTTGAGATACTGTCGCTGTCCGGTTCATTCCTTCTATCAGAGAATGGAGGCCATCGTAGTCGAACTGGTGGGCTCAGTGTTTCTCTAGCAGGCCCTGATGGTCGCGTCTTGGGTGGTGGAGTTGCTGGACTTCTGACAGCTGCTTCACCAGTGCAGATTGTGGTGGGAAGCTTCAACACCGAAGGGAAAAAGGGGCCAAAGCTGCATGC TCCTTCA GA CCCAATGTCTGCA CCG CTAA A GATGGTG  CCGATGAGCGGGACGGGGCCAAGCAGCCCGCCATCAAGGGGCACATTGAGTGAATCATCGGGCGGCCCGGGGAGCCCGCTGAACCAAGGTGTCACGGCCAGCAACCATGGCCAGCCAGGGCTACCCAGCTTATCCTGGAAGTGAGCT CCTCCTCC TCATCAT C ATCAGTGACCAGACCTTGGTCCCGTCTGACCGCCGTAGAACTTGCGAAAGGAAATGTCGTGGCGGTGGTACTCGAGGTACTCCGGTGCGACGCCATGGATCCTAACTAGCCCCCCTATCTAGTGTAATGTCTGAACCTGAATCAGGGAAGAAAACTGTAGCCGTTGCATCTCTAGCTAGCTCTTCTGGTGTAGGTGCTGTTACTATTGGAGACTAGACTCAATGTGTTATTTAGGTGGTTAAATTGTTTTTTTATCTTCCAGACACCGATGAAAAAGCTCATTGCTTCTATGTAACTATGTTGGCATGTTGCGGTTAGCTTGTGGCT                            ]
[+] EMBL CB637809             [                                                                                                                                                                                                                                                                                                                  ATTTTCTTGCGGTTTGTTCTTAAGTACTCGCTAGTGTCCCTAATTTCCTGGTAATTTCTTGGTAATTTTTGGCTGCTTACTTTGCTCGAGCTGGGATCTGTGTTTCAGTGCTCACTTGCTAAATCCGAACCAAATTAAACCTTGGATTTTAAAACTCCTTCCAGCTATTTTTCCGTTTTTATTTGGGAAATTGTGGGTTTACCATTTCTTCCTCCGATTTTCTTTTCCATTTTCTCCCCTCATTTGAGCTTCCTTCTCACCCATTCCAAGAAATCACCATCCTTCCGCTGTAAAATCGTTGAAAAAAAAATTGTTCCACAGCTTTGAGCAGCGCGGGGTTTATGGTGGTTTTTGCAACTCTCGTCTTCTTCCTCAGCTCGCCTTGAAATTTCGGTCCAAGAAATCACTGAGCTGAGTGAGCTGCTGAGCTGAACTTCTGCGAGAGAAGGTGTGGGAATGATGGAAGTGACTTAAGTGAGGGCGTCtcctg                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL C72183               [                                                                                                                                                                                                                                                                                                                                                                                                                            AGTGCTCACTTGCTAAATCCGAACCAAATTAAACCTTGGATTTTAAAACTCCTTCCAGCTATTTTTCCGTTTTTATTTGGGAAATTGTGGGTTTACCATTTCTTCCTCCGATTTTCTTTTCCATTTTCTCCCCTCATTTGAGCTTCCTTCTCACCCATTCCAAGAAATCACCATCCTTCCGCTGTAAAATCGTTGAAAAAAAAATTGTTCCACAGCTTTGAGCAGCGCGNGGTTTATGGTGGTTTTTGCAGCTCTCGTCTTCTTCCTCAGCTCGCCTTGAAATTTCGGTCCAAGAAATCACTGAGCTGAGTGAGCTGCTGAGCTGAGCTTCTGCGAGAGAAGGTGTGGGAATGATGGAGGTGACTCAGGTGAGGGCGTCGTCGGAGATGGCGGGAGGAAGGGAGCCGTTCGTGCTG CCAAGAGCCCGCC GCG  GGCGCCTGCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CB639399             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CAGCTATTTTTCCGTTTTTATTTGGGAAATTGTGGGTTTACCATTTCTTCCTCCGATTTTCTTTTCCATTTTCTCCCCTCATTTGAGCTTCCTTCTCACCCATTCCAAGAAATCACCATCCTTCCGCTGTAAAATCGTTGAAAAAAAAATTGTTCCACAGCTTTGAGCAGCGCGGGGTTTATGGTGGTTTTTGCAGCTCTCGTCTTCTTCCTCAGCTCGCCTTGAAATTTCGGTCCAAGAAATCACTGAGCTGAGTGAGCTGCTGAGCTGAGCTTCTGCGAGAGAAGGTGTGGGAATGATGGAGGTGACTCAGGTGAGGGCGTCGTCGGAGAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CB672071             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GCCGCGAAGTCGCCGGACGCCGTGTCGTCGGCGCCGCCGCCGGGGGCGAAGAAGAGGGGGCGGCCAAAGGGCTCCACGAACAAGAAGCACGTGCCCTCTTTCGGAATTGGAGATATCGGGTCAGCAGGAGCTGGATTCACACCTCATGTTATTTTTGTTAAAGCTGGAGAGGATGTATCTGCAAAGATCATGTCATTCTCCCAGCATGGAACTCGTGGAGTATGCGTTCTGTCAGCAAACGGCGCCATATCAAATGTGACACTTCGGCAAGCTGCTACTTCCGGTGGAACAGTAACATACGAGGGACGATTTGAGATACTGTCGCTGTCCGGTTCATTCCTTCTATCAGAGAATGGAGGCCATCGTAGTCGAACTGGTGGGCTCAGTGTTTCTCTAGCAGGCCCTGATGGTCGCGTCTTGGGTGGTGGAGTTGCTGGACTTCTGACAGCTGCTTCACCAGTGCAGATTGTCGTGGGAAGCTTCAACACCGAAGGGAAAAAGGGGCCAAAGCTGCATGC TCCTTCA GA CCCAATGTCTGCA CCG CTAA A GATGGTG  CCGATGAGCGGGACGGGGCCAAGCAGCCCGCCATCAAGGGGCACATTGAGTGAATCATCGGGCGGCCCGGGGAGCCCGCTGAACCAAGGTGTCACGGCCAGCAACCATGGCCAGCCAGGGCTACCCAGCTTATCCTGGAAGTGAGCT CCTCCTCC TCATCAT C ATCAGTGACCAGACCTTGGTCCCGTCTGACCGCCGTAGAACTTGCGAAAGGAAATGTCGTGG                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CB637810             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      AGATTGTGGTGGGAAGCTTCAACACCGAAGGGAAAAAGGGGCCAAAGCTGCATGC TCCTTCA GA CCCAATGTCTGCA CCG CTAA A GATGGTG  CCGATGAGCGGGACGGGGCCAAGCAGCCCGCCATCAAGGGGCACATTGAGTGAATCATCGGGCGGCCCGGGGAGCCCGTTGAACCAAGGTGTCACGGCCAGCAACCATGGCCAGCCAGGGCTACCCAGCTTATCCTGGAAGTGAGCT CCTCCTCC TCATCAT C ATCAGTGACCAGACCTTGGTCCCGTCTGACCGCCGTAGAACTTGCGAAAGGAAATGTCGTGGCGGTGGTACTCGAGGTACTCCGGTGCGACGCCATGGATCCTAACTAGCCCCCCTATCTAGTGTAATGTCTGAACCTGAATCAGGGAAGAAAACTGTAGCCGTTGCATCTCTAGCTAGCTCTTCTGGTGTAGGTGCTGTTACTATTGGAGACTAGACTCAATGTGTTATTTAGGTGGTTAAATTGTTTTTTT TCTTCCAGACACCGATGAAAAAACTCA TGCTTCT                                                                  ]
[+] EMBL BI807987             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TGCTTCCTTCAGGACCCCTATGTCTGCACCCGTCTAATAGGATGGTGCCCCGATGAGC GGAC GGGCCAA CAGCCCGCCATCGAGGGGCACATTGAGTGAATCATC GGC GCCCGGGGAGCCCGCTGAACCAAGGTGTCACGGCCAGCAACCAT GCCAGCCAGGGCTACCCAGCTTATCCTGGAAGTGAGCT CCTCCTCC TCATCAT C ATCAGTGACCAGACCTTGGTCCCGTCTGACCGCCGTAGAACTTGCGAAAGGAAATGTCGT GCGGTGGTACTCGAGGTACTCCGGTGCGACGCCATGGATCCTAACTAGCCCCCCTATCTAGTGTAATGTCTGAACCTGAATCAGGGAAGAAAACTGTAGCCGTTGCATCTCTAGCTAGCTCTTCTGGTGTAGGTGCTGTTACTATTGGAGACTAGACTCAATGTGTTATTTAGGTGGTTAAATTGTTTTTCTATCTTCCAGACACCGATGAAAAAGCTCATTGCTTCTATGTAACTATGTTGGCATGTTGCGGTTAaaaaaa                                ]
[+] EMBL BI807812             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      AGTGAGCTGCCTCCTCCGTCATCATGCGATCAGTGACCAGACCTT GTCCCGTCTGACCGCCGTAGAACTTGCGAAAGGAAATGTCGTGGCGGTGGTACTCGAGGTACTCCGGTGCGACGCCATGGATCCTAACTAGCCCCCCTATCTAGTGTAATGTCTGAACCTGAATCAGGGAAGAAAACTGTAGCCGTTGCATCTCTAGCTAGCTCTTCTGGTGTAGGTGCTGTTACTATTGGAGACTAGACTC ATGTGTTATTTAGGTGGTTAAATTGTTTTTCTATCTTCCAGACAC                                                                                         ]
[-] EMBL AU225272             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CTAGCCCCCCTATCTAGTGTAATGTCTGAACCTGAATCAGGGAAGAAAACTGTAGCCGTTGCATCTCTAGCTAGCTCTTCTGGTGTAGGTGCTGTTACTATTGGAGACTAGACTCAATGTGTTATTTAGGTGGTTAAATTGTTTTTTTATCTTCCAGACACCGATGAAAAAGCTCATTGCTTCTATGTAACTATGTTGGCATGTTGCGGTTAGCTTGTGGCTCAGTTCTTTAGCGGC             ]
[+] EMBL AU082939             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               AATGTCTGAACCTGAATCAGGGAAGAAAACTGTAGCCGTTGCATCTCTAGCTAGCTCTTCTGGTGTAGGTGCTGTTACTATTGGAGACTAGACTCAATGTGTTATTTAGGTGGTTAAATTGTTTTTTTATCTTCCAGACACCGATGAAAAAGCTCATTGCTTCTATGTAACTATGTTGGCATGTTGCGGTTAGCTTGTGGCTCAGTTCTTTTACCTTCTGGTAAAAAAAA]




>consensus_13455#0
TCACCTGCTCATTTTTTATTTCCCAAATTATAAAACCTTTTCTTTTTTGTTCCCCAAAGA
TTACGTGCTAGTAGGGGCGTTAAGAAAAAGGAAAAGAAAGAGAAGGAAAAAAAAAACGGA
GAGAGAAAAATTGGAGAGGCGGGCGAGTTAGGGGAATTTACGTAGGAGACAAGCGAAATC
CCTAAATTTTCTCTCCTCTCCTCGCGAGTTGTTTTGAGTGAGTTTCTGCGAGTGCTCTTG
AGCTTCCATCTTTCCGCATAAGGCTTTGCAAGCTTTGCTCTAGCCTTTTTTTTTTTGTTC
AGATTATTTTCTTGCGGTTTGTTCTTAAGTACTCGCTAGTGTCCCTAATTTCCTGGTAAT
TTCTTGGTAATTTTTGGCTGCTTACTTTGCTCGAGCTGGGATCTGTGTTTCAGTGCTCAC
TTGCTAAATCCGAACCAAATTAAACCTTGGATTTTAAAACTCCTTCCAGCTATTTTTCCG
TTTTTATTTGGGAAATTGTGGGTTTACCATTTCTTCCTCCGATTTTCTTTTCCATTTTCT
CCCCTCATTTGAGCTTCCTTCTCACCCATTCCAAGAAATCACCATCCTTCCGCTGTAAAA
TCGTTGAAAAAAAAATTGTTCCACAGCTTTGAGCAGCGCGGGGTTTATGGTGGTTTTTGC
AGCTCTCGTCTTCTTCCTCAGCTCGCCTTGAAATTTCGGTCCAAGAAATCACTGAGCTGA
GTGAGCTGCTGAGCTGAGCTTCTGCGAGAGAAGGTGTGGGAATGATGGAGGTGACTCAGG
TGAGGGCGTCGTCGGAGATGGCGGGAGGAAGGGAGCCGTTCGTGCTGCCCAAGAGCCCGC
CGGCGGCGGCGCCTGCGCCGCCGCCGCCGTCGTCCGGCGGCATGCAGAGCGTGCGCATGG
CGTACACGGCGGACGGCACGCCCATCTTCGCTCCGGTGAACTCCGCCCCGGCCCCGGCCC
CGGCGGCGACGTACCCGCCCGCAGGAGGCAATGGCGCGGCGGCTCTCGACGCCGGCGAGC
CGGTGGTCAAGAAGAAGCGTGGCCGGCCAAGGAAGTACGGCCCCGACGGCTCCATGTCGC
TGGCATTGGTGCCCGTGTCCACCGCGGCGGTGGCGGCCTCCGGGCCTTTCTCGCCGGCGG
CTGCCGCGAAGTCGCCGGACGCCGTGTCGTCGGCGCCGCCGCCGGGGGCGAAGAAGAGGG
GGCGGCCAAAGGGCTCCACGAACAAGAAGCACGTGCCCTCTTTCGGAATTGGAGATATCG
GGTCAGCAGGAGCTGGATTCACACCTCATGTTATTTTTGTTAAAGCTGGAGAGGATGTAT
CTGCAAAGATCATGTCATTCTCCCAGCATGGAACTCGTGGAGTATGCGTTCTGTCAGCAA
ACGGCGCCATATCAAATGTGACACTTCGGCAAGCTGCTACTTCCGGTGGAACAGTAACAT
ACGAGGGACGATTTGAGATACTGTCGCTGTCCGGTTCATTCCTTCTATCAGAGAATGGAG
GCCATCGTAGTCGAACTGGTGGGCTCAGTGTTTCTCTAGCAGGCCCTGATGGTCGCGTCT
TGGGTGGTGGAGTTGCTGGACTTCTGACAGCTGCTTCACCAGTGCAGATTGTGGTGGGAA
GCTTCAACACCGAAGGGAAAAAGGGGCCAAAGCTGCATGCTCCTTCAGACCCAATGTCTG
CACCGCTAAAGATGGTGCCGATGAGCGGGACGGGGCCAAGCAGCCCGCCATCAAGGGGCA
CATTGAGTGAATCATCGGGCGGCCCGGGGAGCCCGCTGAACCAAGGTGTCACGGCCAGCA
ACCATGGCCAGCCAGGGCTACCCAGCTTATCCTGGAAGTGAGCTCCTCCTCCTCATCATC
ATCAGTGACCAGACCTTGGTCCCGTCTGACCGCCGTAGAACTTGCGAAAGGAAATGTCGT
GGCGGTGGTACTCGAGGTACTCCGGTGCGACGCCATGGATCCTAACTAGCCCCCCTATCT
AGTGTAATGTCTGAACCTGAATCAGGGAAGAAAACTGTAGCCGTTGCATCTCTAGCTAGC
TCTTCTGGTGTAGGTGCTGTTACTATTGGAGACTAGACTCAATGTGTTATTTAGGTGGTT
AAATTGTTTTTTTATCTTCCAGACACCGATGAAAAAGCTCATTGCTTCTATGTAACTATG
TTGGCATGTTGCGGTTAGCTTGTGGCTCAGTTCTTTAGCGGCCTGGTAAAAAAAA

consensusID : consensus_13455#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 646
fasta sequence 
                              [CACCNTTCTTNGGGTCGGGTGGATTCTGGAACTTTCGGACANTGGCGTTGCACCAGGCCAGATTGTGTGTGGGAAGNTTCTACACCCGAAGGGAAAAAGGGGCCCAAAGCTGCATGGCTCCTTCAGACCCAATGTCTGCACCGTCTAGAAGATGGTGCCGATGAGCGGGACGGGGCCAAGCAGCCCGCCATCGAGGGGCACANTGAGTGAATCATCGGGCGGCCCGGGGAGCCCGCTGAACCAAGGTGTCACAGGCCAGCAACCATGGCCAGCCAGGGCTACCCAGCTTATTCCGTGGAAGTGAGCTCCTCCTCCGTCAGTCANTCAGTCACGTGATCCAGACCCTGTGGTCCCGTCTGACCGCCGTAGAACTTGCCGAAAGGAAATGTTCGTGGCGGTGGATACTCGAGGTATCTCCGGTGCTGACGCCCACTGGATCCTAACTAGCCCCCCTATTTAGTGTAATGTCTGAACCTGAATCACGGGAAGAAAACTGTACCCGTTGCATCTCTAGCCTAGTCTCTTCTGGTGTAGGTGCTGTTAACTATTGGAGACTAGACTCAATGTGTTATTTAGGTGGTTAAATTGTTTTTCTATACTTCCAGACACCGATGAAAAAGCTCATTGCTTCTATGTAAAAAAAAAA]

[+] EMBL BQ907112             [CACCNTTCTTNGGGTCGGGTGGATTCTGGAACTTTCGGACANTGGCGTTGCACCAGGCCAGATTGTGTGTGGGAAGNTTCTACACCCGAAGGGAAAAAGGGGCCCAAAGCTGCATGGCTCCTTCAGACCCAATGTCTGCACCGTCTAGAAGATGGTGCCGATGAGCGGGACGGGGCCAAGCAGCCCGCCATCGAGGGGCACANTGAGTGAATCATCGGGCGGCCCGGGGAGCCCGCTGAACCAAGGTGTCACAGGCCAGCAACCATGGCCAGCCAGGGCTACCCAGCTTATTCCGTGGAAGTGAGCTCCTCCTCCGTCAGTCANTCAGTCACGTGATCCAGACCCTGTGGTCCCGTCTGACCGCCGTAGAACTTGCCGAAAGGAAATGTTCGTGGCGGTGGATACTCGAGGTATCTCCGGTGCTGACGCCCACTGGATCCTAACTAGCCCCCCTATTTAGTGTAATGTCTGAACCTGAATCACGGGAAGAAAACTGTACCCGTTGCATCTCTAGCCTAGTCTCTTCTGGTGTAGGTGCTGTTAACTATTGGAGACTAGACTCAATGTGTTATTTAGGTGGTTAAATTGTTTTTCTATACTTCCAGACACCGATGAAAAAGCTCATTGCTTCTATGTAAAAAAAAAA]




>consensus_13455#1
CACCNTTCTTNGGGTCGGGTGGATTCTGGAACTTTCGGACANTGGCGTTGCACCAGGCCA
GATTGTGTGTGGGAAGNTTCTACACCCGAAGGGAAAAAGGGGCCCAAAGCTGCATGGCTC
CTTCAGACCCAATGTCTGCACCGTCTAGAAGATGGTGCCGATGAGCGGGACGGGGCCAAG
CAGCCCGCCATCGAGGGGCACANTGAGTGAATCATCGGGCGGCCCGGGGAGCCCGCTGAA
CCAAGGTGTCACAGGCCAGCAACCATGGCCAGCCAGGGCTACCCAGCTTATTCCGTGGAA
GTGAGCTCCTCCTCCGTCAGTCANTCAGTCACGTGATCCAGACCCTGTGGTCCCGTCTGA
CCGCCGTAGAACTTGCCGAAAGGAAATGTTCGTGGCGGTGGATACTCGAGGTATCTCCGG
TGCTGACGCCCACTGGATCCTAACTAGCCCCCCTATTTAGTGTAATGTCTGAACCTGAAT
CACGGGAAGAAAACTGTACCCGTTGCATCTCTAGCCTAGTCTCTTCTGGTGTAGGTGCTG
TTAACTATTGGAGACTAGACTCAATGTGTTATTTAGGTGGTTAAATTGTTTTTCTATACT
TCCAGACACCGATGAAAAAGCTCATTGCTTCTATGTAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13455#0      TCACCTGCTCATTTTTTATTTCCCAAATTATAAAACCTTTTCTTTTTTGTTCCCCAAAGA 60
consensus_13455#1      ------------------------------------------------------------
                                                                                   

consensus_13455#0      TTACGTGCTAGTAGGGGCGTTAAGAAAAAGGAAAAGAAAGAGAAGGAAAAAAAAAACGGA 120
consensus_13455#1      ------------------------------------------------------------
                                                                                   

consensus_13455#0      GAGAGAAAAATTGGAGAGGCGGGCGAGTTAGGGGAATTTACGTAGGAGACAAGCGAAATC 180
consensus_13455#1      ------------------------------------------------------------
                                                                                   

consensus_13455#0      CCTAAATTTTCTCTCCTCTCCTCGCGAGTTGTTTTGAGTGAGTTTCTGCGAGTGCTCTTG 240
consensus_13455#1      ------------------------------------------------------------
                                                                                   

consensus_13455#0      AGCTTCCATCTTTCCGCATAAGGCTTTGCAAGCTTTGCTCTAGCCTTTTTTTTTTTGTTC 300
consensus_13455#1      ------------------------------------------------------------
                                                                                   

consensus_13455#0      AGATTATTTTCTTGCGGTTTGTTCTTAAGTACTCGCTAGTGTCCCTAATTTCCTGGTAAT 360
consensus_13455#1      ------------------------------------------------------------
                                                                                   

consensus_13455#0      TTCTTGGTAATTTTTGGCTGCTTACTTTGCTCGAGCTGGGATCTGTGTTTCAGTGCTCAC 420
consensus_13455#1      ------------------------------------------------------------
                                                                                   

consensus_13455#0      TTGCTAAATCCGAACCAAATTAAACCTTGGATTTTAAAACTCCTTCCAGCTATTTTTCCG 480
consensus_13455#1      ------------------------------------------------------------
                                                                                   

consensus_13455#0      TTTTTATTTGGGAAATTGTGGGTTTACCATTTCTTCCTCCGATTTTCTTTTCCATTTTCT 540
consensus_13455#1      ------------------------------------------------------------
                                                                                   

consensus_13455#0      CCCCTCATTTGAGCTTCCTTCTCACCCATTCCAAGAAATCACCATCCTTCCGCTGTAAAA 600
consensus_13455#1      ------------------------------------------------------------
                                                                                   

consensus_13455#0      TCGTTGAAAAAAAAATTGTTCCACAGCTTTGAGCAGCGCGGGGTTTATGGTGGTTTTTGC 660
consensus_13455#1      ------------------------------------------------------------
                                                                                   

consensus_13455#0      AGCTCTCGTCTTCTTCCTCAGCTCGCCTTGAAATTTCGGTCCAAGAAATCACTGAGCTGA 720
consensus_13455#1      ------------------------------------------------------------
                                                                                   

consensus_13455#0      GTGAGCTGCTGAGCTGAGCTTCTGCGAGAGAAGGTGTGGGAATGATGGAGGTGACTCAGG 780
consensus_13455#1      ------------------------------------------------------------
                                                                                   

consensus_13455#0      TGAGGGCGTCGTCGGAGATGGCGGGAGGAAGGGAGCCGTTCGTGCTGCCCAAGAGCCCGC 840
consensus_13455#1      ------------------------------------------------------------
                                                                                   

consensus_13455#0      CGGCGGCGGCGCCTGCGCCGCCGCCGCCGTCGTCCGGCGGCATGCAGAGCGTGCGCATGG 900
consensus_13455#1      ------------------------------------------------------------
                                                                                   

consensus_13455#0      CGTACACGGCGGACGGCACGCCCATCTTCGCTCCGGTGAACTCCGCCCCGGCCCCGGCCC 960
consensus_13455#1      ------------------------------------------------------------
                                                                                   

consensus_13455#0      CGGCGGCGACGTACCCGCCCGCAGGAGGCAATGGCGCGGCGGCTCTCGACGCCGGCGAGC 1020
consensus_13455#1      ------------------------------------------------------------
                                                                                   

consensus_13455#0      CGGTGGTCAAGAAGAAGCGTGGCCGGCCAAGGAAGTACGGCCCCGACGGCTCCATGTCGC 1080
consensus_13455#1      ------------------------------------------------------------
                                                                                   

consensus_13455#0      TGGCATTGGTGCCCGTGTCCACCGCGGCGGTGGCGGCCTCCGGGCCTTTCTCGCCGGCGG 1140
consensus_13455#1      ------------------------------------------------------------
                                                                                   

consensus_13455#0      CTGCCGCGAAGTCGCCGGACGCCGTGTCGTCGGCGCCGCCGCCGGGGGCGAAGAAGAGGG 1200
consensus_13455#1      ------------------------------------------------------------
                                                                                   

consensus_13455#0      GGCGGCCAAAGGGCTCCACGAACAAGAAGCACGTGCCCTCTTTCGGAATTGGAGATATCG 1260
consensus_13455#1      ------------------------------------------------------------
                                                                                   

consensus_13455#0      GGTCAGCAGGAGCTGGATTCACACCTCATGTTATTTTTGTTAAAGCTGGAGAGGATGTAT 1320
consensus_13455#1      ------------------------------------------------------------
                                                                                   

consensus_13455#0      CTGCAAAGATCATGTCATTCTCCCAGCATGGAACTCGTGGAGTATGCGTTCTGTCAGCAA 1380
consensus_13455#1      ------------------------------------------------------------
                                                                                   

consensus_13455#0      ACGGCGCCATATCAAATGTGACACTTCGGCAAGCTGCTACTTCCGGTGGAACAGTAACAT 1440
consensus_13455#1      ------------------------------------------------------------
                                                                                   

consensus_13455#0      ACGAGGGACGATTTGAGATACTGTCGCTGTCCGGTTCATTCCTTCTATCAGAGAATGGAG 1500
consensus_13455#1      ------------------------------------------------------------
                                                                                   

consensus_13455#0      GCCATCGTAGTCGAACTGGTGGGCTCAGTGTTTCTCTAGCAGGCCCTGATGGTCGCGTCT 1560
consensus_13455#1      --------------------------------------------------CACCNTTCTT 10
                                                                            *     *

consensus_13455#0      TGGGTGGTGGAGTTGCTGGA--CTTCTGACAGCTGCTT--CACCAGTGCAGATTGTG-GT 1615
consensus_13455#1      NGGGTCGGGTGGATTCTGGAACTTTCGGACANTGGCGTTGCACCAGGCCAGATTGTGTGT 70
                        **** * *  * * *****   *** ****   ** *  ******  ********* **

consensus_13455#0      GGGAAGCTTCAACACC-GAAGGGAAAAAGGGGCC-AAAGCTGCATG-CTCCTTCAGACCC 1672
consensus_13455#1      GGGAAGNTTCTACACCCGAAGGGAAAAAGGGGCCCAAAGCTGCATGGCTCCTTCAGACCC 130
                       ****** *** ***** ***************** *********** *************

consensus_13455#0      AATGTCTGCACCGCT--AAAGATGGTGCCGATGAGCGGGACGGGGCCAAGCAGCCCGCCA 1730
consensus_13455#1      AATGTCTGCACCGTCTAGAAGATGGTGCCGATGAGCGGGACGGGGCCAAGCAGCCCGCCA 190
                       *************     ******************************************

consensus_13455#0      TCAAGGGGCACATTGAGTGAATCATCGGGCGGCCCGGGGAGCCCGCTGAACCAAGGTGTC 1790
consensus_13455#1      TCGAGGGGCACANTGAGTGAATCATCGGGCGGCCCGGGGAGCCCGCTGAACCAAGGTGTC 250
                       ** ********* ***********************************************

consensus_13455#0      AC-GGCCAGCAACCATGGCCAGCCAGGGCTACCCAGCTTATCC--TGGAAGTGAGCTCCT 1847
consensus_13455#1      ACAGGCCAGCAACCATGGCCAGCCAGGGCTACCCAGCTTATTCCGTGGAAGTGAGCTCCT 310
                       ** ************************************** *  ***************

consensus_13455#0      CCTCC-TCA-TCATC--ATCA-GTGA-CCAGACCTTG--GTCCCGTCTGACCGCCGTAGA 1899
consensus_13455#1      CCTCCGTCAGTCANTCAGTCACGTGATCCAGACCCTGTGGTCCCGTCTGACCGCCGTAGA 370
                       ***** *** ***     *** **** ******* **  *********************

consensus_13455#0      ACTTGC-GAAAGGAAATGT-CGTGGCGGTGG-TACTCGAGGTA-CTCCGGTGC-GACGCC 1954
consensus_13455#1      ACTTGCCGAAAGGAAATGTTCGTGGCGGTGGATACTCGAGGTATCTCCGGTGCTGACGCC 430
                       ****** ************ *********** *********** ********* ******

consensus_13455#0      A--TGGATCCTAACTAGCCCCCCTATCTAGTGTAATGTCTGAACCTGAATCA-GGGAAGA 2011
consensus_13455#1      CACTGGATCCTAACTAGCCCCCCTATTTAGTGTAATGTCTGAACCTGAATCACGGGAAGA 490
                          *********************** ************************* *******

consensus_13455#0      AAACTGTAGCCGTTGCATCTCTAGC-TAG-CTCTTCTGGTGTAGGTGCTGTTA-CTATTG 2068
consensus_13455#1      AAACTGTACCCGTTGCATCTCTAGCCTAGTCTCTTCTGGTGTAGGTGCTGTTAACTATTG 550
                       ******** **************** *** *********************** ******

consensus_13455#0      GAGACTAGACTCAATGTGTTATTTAGGTGGTTAAATTGTTTTTTTAT-CTTCCAGACACC 2127
consensus_13455#1      GAGACTAGACTCAATGTGTTATTTAGGTGGTTAAATTGTTTTTCTATACTTCCAGACACC 610
                       ******************************************* *** ************

consensus_13455#0      GATGAAAAAGCTCATTGCTTCTATGTAACTATGTTGGCATGTTGCGGTTAGCTTGTGGCT 2187
consensus_13455#1      GATGAAAAAGCTCATTGCTTCTATGTAAAAAAAAAA------------------------ 646
                       ****************************  *                             

consensus_13455#0      CAGTTCTTTAGCGGCCTGGTAAAAAAAA 2215
consensus_13455#1      ----------------------------


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)