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Oryza sativa
cluster # 13458 cluster # 13458       Sequences # 13       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13458#0 length = 1258 sequences # 8  
consensus_13458#1 length = 689 sequences # 3  
consensus_13458#2 length = 216 sequences # 1  
consensus_13458#3 length = 199 sequences # 1  

consensusID : consensus_13458#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1258
fasta sequence
                              [CCTCNCTCCTCCCCCACTTCTCCCCACCACCACACCACCACACACACGCACGCACGCACGCACGCCTCCGTTTTCCCCCACCGACGAGAGGCGGAGAGGGAGGGGAGCTAGGGTTTTTCGGGGCGGGGATGGCGCGGAGGGGGAGAGTGCAGCTGAGGCGGATCGAGGACAAGGCGAGCCGGCAGGTGCGGTTCTCCAAGAGGAGGGCGGGGCTGTTCAAGAAGGCGTTCGAGCTCGCCCTGCTCTGCGACGTG-GAGGTGGCGCTCCTCGTC-TTCTCCCCCGTCGGCAAGCTCTACGAGTACTCCTCCTCCAGCATTGAAGGTACCTATG-ATCGCTATCAGCAATTCGCTGG-AGCCAGGAGAGACCTGAACGAAGGAAGTACAAGCATCAACAGTGATGAAAATGCAAGTAT-A-CACTCCAGGCTTAGGG-ACAT-AACGGCCTGGTCTCTCCAAA-ACAATGCTGACGAGTCGGATGCTAATCAGCTAGAGAAACTGGAGAAACTGCTGACA-AATGCTTTGAGGGATACGAAATCA-AAGAAGATGTTGGCAAAACAAAATGGTGAAGGGAGTAGGAGCA-GAGCAAACTCCAGTGGCTCTAGGGGGCAGGAGGAAGGAAGTGCATGAGCA-GGAAGCACAGGTGTCCTGTGCATAAGTTTGGCAGTGCATGCACCTCCCAAATTAAAAAGCTAAT-AAAAAAAAAGAGAAAATGGTGCATGCTCTGTTTGCTGCCAGTTTCTCCCACTGATTGATCCCAGGTA-GAGAAAAGAGTTGCCATGGCCTCTGGCTCTGCTTGTTAGATCAAGG-GGGGGAGATGGAATAAAAGGATGGGGAAGTATTCAGGTTCTTGTAATGAAGACCTATGCTGTGGTGTTTTAGCAATGTTTGATGTGTGTGCTACCTGTGTTTGACTGGTTGTGTTGCTTGATGTGAGTCATCTGACCATGATACTGAAAGCCTGATAATTGCACTGACTTGTGTATGGAGTTTGTTTCAACCTATTGGTATGAATCTGTTTGATTCTGTAGGAACTGTGGTTTGCTGTTTGCCAGATCTGATTATTACGCGTGATACAATCTGTCCTTATTATGTCTAGGGACCCTTATGTCTATGTGTGTTGTTTATTCGAATCTGGCAGTGAACAATCTGACGAGGAACTGAAAATAACTGATAGATGGTTACGTTGCTGTATCTGTAAGTGTGAGTGAGTGGATGCTTATACAATCTTATTTTTAAATAATTATAAGTTGTGCCTGCGTCGG]

[+] EMBL AK066160             [CCTCNCTCCTCCCCCACTTCTCCCCACCACCACACCACCACACACACGCACGCACGCACGCACGCCTCCGTTTTCCCCCACCGACGAGAGGCGGAGAGGGAGGGGAGCTAGGGTTTTTCGGGGCGGGGATGGCGCGGAGGGGGAGAGTGCAGCTGAGGCGGATCGAGGACAAGGCGAGCCGGCAGGTGCGGTTCTCCAAGAGGAGGGCGGGGCTGTTCAAGAAGGCGTTCGAGCTCGCCCTGCTCTGCGACGTG GAGGTGGCGCTCCTCGTC TTCTCCCCCGTCGGCAAGCTCTACGAGTACTCCTCCTCCAGCATTGAAGGTACCTATG ATCGCTATCAGCAATTCGCTGG AGCCAGGAGAGACCTGAACGAAGGAAGTACAAGCATCAACAGTGATGAAAATGCAAGTAT A CACTCCAGGCTTAGGG ACAT AACGGCCTGGTCTCTCCAAA ACAATGCTGACGAGTCGGATGCTAATCAGCTAGAGAAACTGGAGAAACTGCTGACA AATGCTTTGAGGGATACGAAATCA AAGAAGATGTTGGCAAAACAAAATGGTGAAGGGAGTAGGAGCA GAGCAAACTCCAGTGGCTCTAGGGGGCAGGAGGAAGGAAGTGCATGAGCA GGAAGCACAGGTGTCCTGTGCATAAGTTTGGCAGTGCATGCACCTCCCAAATTAAAAAGCTAAT  AAAAAAAAGAGAAAATGGTGCATGCTCTGTTTGCTGCCAGTTTCTCCCACTGATTGATCCCAGGTA GAGAAAAGAGTTGCCATGGCCTCTGGCTCTGCTTGTTAGATCAAGG GGGGGAGATGGAATAAAAGGATGGGGAAGTATTCAGGTTCTTGTAATGAAGACCTATGCTGTGGTGTTTTAGCAATGTTTGATATGTGTGCTACCTGTGTTTGACTGGTTGTGTTGCTTGATGT  GTCATCTGACCATGATACTGAAAGCCTGATAATTGCACTGACTTGTGTATGGAGTTTGTTTCAACCTATTGGTATGAATCTGTTTGATTCTGTAGGAACTGTGGTTT                                                                                                                                                                                                                              ]
[+] EMBL C91819               [              CACTTCTCCCCACCACCACACCACCACACACACGCACGCACGCACGCACGCCTCCGTTTTCCCCCACCGACGAGAGGCGGAGAGGGAGGGGAGCTAGGGTTTTTCGGGGCGGGGATGGCGCGGAGGGGGAGAGTGCAGCTGAGGCGGATCGAGGACAAGGCGAGCCGGCAGGTGCGGTTCTCCAAGAGGAGGGCGGGGCTGTTCAAGAAGGCGTTCGAGCTCGCCCTGCTCTGCGACGTGNGAGGTGGCGCTCCTCGTCTTTCTCCCCCGTCGGCAAANTCTACGAGTACTCCTCCTCCAGCATTGAAGGTACCTATGAATCGCAATAAGCAATTCGNTGGAAGCAAGGAGAGACCTNAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL AB003327             [                                                     ACGCACGCACGCCTCCGTTTTCCCCCACCGACGAGAGGCGGAGAGGGAGGGGAGCTAGGGTTTTTCGGGGCGGGGATGGCGCGGAGGGGGAGAGTGCAGCTGAGGCGGATCGAGGACAAGGCGAGCCGGCAGGTGCGGTTCTCCAAGAGGAGGGCGGGGCTGTTCAAGAAGGCGTTCGAGCTCGCCCTGCTCTGCGACGTG GAGGTGGCGCTCCTCGTC TTCTCCCCCGTCGGCAAGCTCTACGAGTACTCCTCCTCCAGCATTGAAGGTACCTATG ATCGCTATCAGCAATTCGCTGG AGCCAGGAGAGACCTGAACGAAGGAAGTACAAGCATCAACAGTGATGAAAATGCAAGTAT A CACTCCAGGCTTAGGG ACAT AACGGCCTGGTCTCTCCAAA ACAATGCTGACGAGTCGGATGCTAATCAGCTAGAGAAACTGGAGAAACTGCTGACA AATGCTTTGAGGGATACGAAATCA AAGAAGATGTTGGCAAAACAAAATGGTGAAGGGAGTAGGAGCA GAGCAAACTCCAGTGGCTCTAGGGGGCAGGAGGAAGGAAGTGCATGAGCA GGAAGCACAGGTGTCCTGTGCATAAGTTTGGCAGTGCATGCACCTCCCAAATTAAAAAGCTAAT  AAAAAAAAGAGAAAATGGTGCATGCTCTGTTTGCTGCCAGTTTCTCCCACTGATTGATCCCAGGTA GAGAAAAGAGTTGCCATGGCCTCTGGCTCTGCTTGTTAGATCAAGG GGGGGAGATGGAATAAAAGGATGGGGAAGTATTCAGGTTCTTGTAATGAAGACCTATGCTGTGGTGTTTTAGCAATGTTTGATATGTGTGCTACCTGTGTTTGACTGGTTGTGTTGCTTGATGT  GTCATCTGACCATGATACTGAAAGCCTGATAATTGCACTGACTTGTGTATGGAGTTTGTTTCAACCTATTGGTATGAATCTGTTTGATTCTGTAGGAACTGTGGTTT                                                                                                                                                                                                                              ]
[+] EMBL CA758412             [                                                                                             GAGAGGGAGGGGAGCTAGGGTTTTTCGGGGCGGGGATGGCGCGGAGGGGGAGAGTGCAGCTGAGGCGGATCGAGGACAAGGCGAGCCGGCAGGTGCGGTTCTCCAAGAGGAGGGCGGGGCTGTTCAAGAAGGCGTTCGAGCTCGCCCTGCTCTGCGACGCG GAGGTGGCGCTCCTCGTC TTCTCCCCCGCCGGCAAGCTCTACGAGTACTCCTCCTCCAGCATTGAAGGTACCTATG ATCGCTATCAGCAATTCGCTGG AGCCAGGAGAGACCTGAACGAAGGAAGTACAAGCATCAACAGTGATGAAAATGCAAGTAT A CACTCCAGGCTTAGGG ACAT ATCGGCCTGGTCTCTCCAAA ACAATGCTGACGAGTCGGATGCTAATCAGCTAGAGAAACTGGAGAAACTGCTGACA AATACTTTGAGGGATACGAAATCA AAGAAGATGTTGGCAAAACAAAATGGTGAAGGGAGTAGGAGCA GAGCAAACTCCAGTGGCTCTAGGGGGCAGGAGGAAGGAAGTGCATGAGCA GGAAGCACAGGTGTCCTGTGCATAAGTTTGGCAGTGCATGCACCTCCCAAAATTAAAGGCTTAT AAAAAAAAAGAGAAAATGGTGCATGCTCTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL AF141964             [                                                                                                                                                                             aCGAACCGGCAGGTGCGGTTCTCCAAGAGGAGGGCGGGGCTGTTCAAGAAGGCGTTCGAGCTCGCCCTGCTCTGCGACGCG GAGGTGGCGCTCCTCGTC TTCTCCCCCGCCGGCAAGCTCTACGAGTACTCCTCCTCCAGCATTGAAGATACCTATG ATCGCTATCAGCAATTCGCTGG AGCCAGGAGAGACCTGAACGAAGGAAGTACAAGCATCAACAGTGATGAAAATGCAAGTAT A CACTACAGGCTTAGGG ACAT AACGGCCTGGTCTCTCCAAA ACAATGCTGACGAGTCGGATGCTAATCAGCTAGAGAAACTGGAGAAACTGCTGACA AATGCTTTGAGGGATACGAAATCA AAGAAGATGTTGGCAAAACAAAATGGTGAAGGGAGTAGGAGCA GAGCAAACTCCAGTGGCTCTAGGGGGCAGG    AGGAAGTGCATGAGCA GGAAGCACAGGTGTCCTGTGCATAAGTTTGGCAGTGCATGCACCTTCCAAATTAAAAAGCTAATAAAAAAAAAAGAGAAAATGGTGCATGCTCTGTTTGCTGTCAGTTTCTCCCACTGATTGATCCCAGGTA GAGAAAAGAGTTGCCATGGCCTCTGGCTCTGCTTGTTAGATCAAGG GGGGGAGATGGAATAAAAGGATGGGGAAGTATTCAGGTTCTTGTAATGAAGACCTATGCTGTGGTGTTTTAGCAATGTTTGATGTGTGTGCTACCTGTGTTTGATTGGTTGTGTTGCTTGATGTGAGTCATCTAACCATGATACTGAAAGCCTGATAATTGCACTGACTTGTTGATGGAGTTTGTTTCAACCTATTCGTATGAATCTGTTTG                                                                                                                                                                                                                                                   ]
[+] EMBL BI811202             [                                                                                                                                                                                                                                                                                                                                                                                                                   gAAATGCAAGTATCACCACTACACGCTTAGGGAACATAAACGCCCT GTCTCTCCAAACAC ATGCTGACGAGTCGGAT CTAATCAGCTAGAGAAACTGGAGAAACTGCTGACACAATGCTTTGAGGGATACGAAATCACAAGAAGATGTT GCCAAACCAAATGGTGAAGGGAGTAGGA CACGA CCAACTCCAGTGGCTCTAGGGGGCAGG    AGGAAGTGCATGAGCACGGAAGCACAGGTGTCCTGTGCATAAGTTT GCAGTGCATGCACCTCCCCAATTAAAAAGCTAAT AAAAAAAAAGAGAAAATGGTGCATGCTCTGTTTGCTGTCAGTTTCTCCCCCTGATTGATCCCAGGTA GAGAAAAGAGTTGCCATGGCCTCTGGCTCTGCTTGTTAGATCAAGG GGGGGAGATGGAATAAAAGGATGGGGAAGTATTCAGGTTCTTGTAATGAAGACCTATGCTGTGGTGTTTTAGC ATGTTTGATGTGTGTGCTACCTGTGTTTGACTGGTTGTGTTGCTTGATGTGAGTCATCTAACCATGATACTGAAAGCCTGATAATTGCACTGACTTGTGTATGGAGTTTGTTTCAACCTATTGGTATGAATCTGTTTGATTCTGTAaaaaaaaaa                                                                                                                                                                                                                                  ]
[+] EMBL CB966362             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           TCTCCCACTGATTGATCCCAGGTATGAGAAAAGAGTTGCCATGGCCTCTGGCTCTGCTTGTTAGATCAAGGTGGGGGAGATGGAATAAAAGGATGGGGAAGTATTCAGGTTCTTGTAATGAAGACCTATGCTGTGGTGTTTTAGCAATGTTTGATGTGTGTGCTACCTGTGTTTGACTGGTTGTGTTGCTTGATGTGAGTCATCTAACCATGATACTGAAAGCCTGATAATAGCACTGACTTGTGTATGGAGTTTGTTTCAACCTATTGGTATGAATCTG                                                                                                                                                                                                                                                       ]
[+] EMBL BF430633             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CTGCTTGTTAGATCAAGG GGGGGAGATGGAATAAAAGGATGGGGAAGTATTCAGGTTCTTGTAATGAAGACCTATGCTGTGGTGTTTTAGCAATGTTTGATGTGTGTGCTACCTGTGTTTGACTGGTTGTGTTGCTTGATGTGAGTCATCTGACCATGATACTGAAAGCCTGATAATTGCACTGACTTGTGTATGGAGTTTGTTTCAACCTATTGGTATGAATCTGTTTGATTCTGTAGGAACTGTGGTTTGCTGTTTGCCAGATCTGATTATTACGCGTGATACAATCTGTCCTTATTATGTCTAGGGACCCTTATGTCTATGTGTGTTGTTTATTCGAATCTGGCAGTGAACAATCTGACGAGGAACTGAAAATAACTGATAGATGGTTACGTTGCTGTATCTGTAAGTGTGAGTGAGTGGATGCTTATACAATCTTATTTTTAAATAATTATAAGTTGTGCCTGCGTCGG]


>consensus_13458#0 CCTCNCTCCTCCCCCACTTCTCCCCACCACCACACCACCACACACACGCACGCACGCACG CACGCCTCCGTTTTCCCCCACCGACGAGAGGCGGAGAGGGAGGGGAGCTAGGGTTTTTCG GGGCGGGGATGGCGCGGAGGGGGAGAGTGCAGCTGAGGCGGATCGAGGACAAGGCGAGCC GGCAGGTGCGGTTCTCCAAGAGGAGGGCGGGGCTGTTCAAGAAGGCGTTCGAGCTCGCCC TGCTCTGCGACGTGGAGGTGGCGCTCCTCGTCTTCTCCCCCGTCGGCAAGCTCTACGAGT ACTCCTCCTCCAGCATTGAAGGTACCTATGATCGCTATCAGCAATTCGCTGGAGCCAGGA GAGACCTGAACGAAGGAAGTACAAGCATCAACAGTGATGAAAATGCAAGTATACACTCCA GGCTTAGGGACATAACGGCCTGGTCTCTCCAAAACAATGCTGACGAGTCGGATGCTAATC AGCTAGAGAAACTGGAGAAACTGCTGACAAATGCTTTGAGGGATACGAAATCAAAGAAGA TGTTGGCAAAACAAAATGGTGAAGGGAGTAGGAGCAGAGCAAACTCCAGTGGCTCTAGGG GGCAGGAGGAAGGAAGTGCATGAGCAGGAAGCACAGGTGTCCTGTGCATAAGTTTGGCAG TGCATGCACCTCCCAAATTAAAAAGCTAATAAAAAAAAAGAGAAAATGGTGCATGCTCTG TTTGCTGCCAGTTTCTCCCACTGATTGATCCCAGGTAGAGAAAAGAGTTGCCATGGCCTC TGGCTCTGCTTGTTAGATCAAGGGGGGGAGATGGAATAAAAGGATGGGGAAGTATTCAGG TTCTTGTAATGAAGACCTATGCTGTGGTGTTTTAGCAATGTTTGATGTGTGTGCTACCTG TGTTTGACTGGTTGTGTTGCTTGATGTGAGTCATCTGACCATGATACTGAAAGCCTGATA ATTGCACTGACTTGTGTATGGAGTTTGTTTCAACCTATTGGTATGAATCTGTTTGATTCT GTAGGAACTGTGGTTTGCTGTTTGCCAGATCTGATTATTACGCGTGATACAATCTGTCCT TATTATGTCTAGGGACCCTTATGTCTATGTGTGTTGTTTATTCGAATCTGGCAGTGAACA ATCTGACGAGGAACTGAAAATAACTGATAGATGGTTACGTTGCTGTATCTGTAAGTGTGA GTGAGTGGATGCTTATACAATCTTATTTTTAAATAATTATAAGTTGTGCCTGCGTCGG



consensusID : consensus_13458#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 689
fasta sequence
                              [CCAAAGNAAGTCCAAGCATCCACCAGTGATGAAAATGCAAGTATNCACTCCAGGCTTAGGGACATACCGGCCTGGTCTCTCCAAACCAATGCTGACAAGTCGGATGCTAATCAGCTAGAGAAACTGAAGAAACTGCTGACAAATGCTTTGAGGGATACGAAATCAAAGAAGATGTTGGCAAANCAAAATGGTGAAGGGAGTAGGAGCAGAGCAAACTCCAGTGGCTCTAGGGGGCAGGAGGAAGGAAGTGCATGAGCAGGAAGCACAGGTGTCCTGTGCATAAGTTTGGCAGTGCATGCACCTCCCAAATTAAAAAGCTAATAAAAAAAAGAGAAAATGGTGCATGCTCTGTTTGCTGCCAGTTTCTCCCACTGATTGATCC-CAGGTAGAGAAAAGAGTTGCCATGGCCTCTGGCTCTGCTTGTTAGATCAAGGGGGGGAGATGGAATAAAAGGATGGGGAAGTATTCAGGTTCTTGTAATGAAGACCTATGCTGTGGTGTTTTAG-CAATGTTTGATAT-GTGTGCTACCTGTGTTTG-ACTGG-TTGTGTT-GCTTG-ATGTG-TCA-TCTGACC--ATGAT--ACT-GAAAG-CCTGATAATTG--C-ACTG-ACTTGTGTATGGAGTTTGTTTCAACCTATTGGTATGAATCTGTTTGATTCTGTAGGAACTGTGGTTTGCTGTTTGCCAAAAAAAAAAAAAA]

[+] EMBL AU078725             [CCAAAGNAAGTCCAAGCATCCACCAGTGATGAAAATGCAAGTATNCACTCCAGGCTTAGGGACATACCGGCCTGGTCTCTCCAAACCAATGCTGACAAGTCGGATGCTAATCAGCTAGAGAAACTGAAGAAACTGCTGACAAATGCTTTGAGGGATACGAAATCAAAGAAGATGTTGGCAAANCAAAATGGTGAAGGGAGTAGGAGCAGAGCAAACTCCAGTGGCTCTAGGGGGCAGGAGGAAGGAAGTGCATGAGCAGGAAGCACAGGTGTCCTGTGCATAAGTTTGGCAGTGCATGCACCTCCCAAATTAAAAAGCTAATAAAAAAAAGAGAAAATGGTGCATGCTCTGTTTGCTGCCAGTTTCTCCCACTGATTGATCC CAGGTAGAGAAAAGAGTTGCCATGGCCTCTGGCTCTGCTTGTTAGATCAAGGGGGGGAGATGGAATAAAAGGATGGGGAAGTATTCAGGTTCTTGTAATGAAGACCTATGCTGTGGTGTTTTAG CAATGTTTGATAT GTGTGCTACCTGTGTTTG ACTGG TTGTGTT GCTTG ATGTG TCA TCTGACC  ATGAT  ACT GAAAG CCTGATAATTG  C ACTG ACTTGTGTATGGAGTTTGTTTCAACCTATTGGTATGAATCTGTTTGATTCTGTAGGAACTGTGGTTTGCTGTTTGCCAAAAAAAAAAAAAA]
[-] EMBL AU225703             [                                                                                                                                                                                                                                                  AGGAAGTGCATGAGCAGGAAGCACAGGTGTCCTGTGCATAAGTTTGGCAGTGCATGCACCTCCCAAATTAAAAAGCTAATAAAAAAAAGAGAAAATGGTGCATGCTCTGTTTGCTGCCAGTTTCTCCCACTGATTGATCCACAGGTAGAGAAAAGAGTTGCCATGGCCTCTGGCTCTGCTTGTTAGATCAAGGGGGGGAGATGGAATAAAAGGATGGGGAAGTATTCAGGTTCTTGTAATGAAGACCTATGCTGTGGTGTTTTAGCCAATGTTTGATATGGTGTGCTACCTGTGTTTGAACTGGTTTGTGTTGGCTTGAATGTGTTCATTCTGACCCAATGATTAACTGGAAAGCCCTGATAATTGGCCAACTGAACTTGTGTATGGAGTTTGTTTCAACCTATTGGTATGAATCTGagcggc                                           ]
[+] EMBL C28236               [                                                                                                                                                                                                                                                                                                                                           AGAAAATGGTGCATGCTCTGTTTGCTGCCAGTTTCTCCCACTGATTGATCC CAGGTAGAGAAAAGAGTTGCCATGGCCTCTGGCTCTGCTTGTTAGATCAAGGGGGGGAGATGGAATAAAAGGATGGGGAAGTATTCAGGTTCTTGTAATGAAGACCTATGCTGTGGTGTTTTAG CAATGTTTGATAT GTGTGCTACCTGTGTTTG ACTGG TTGTGTT GCTTG ATGTG TCA TCTGACC  ATGAT  ACT GAAAG CCTGATAATTG  C ACTG ACTTGTGTATGGAGTTTGTTTCAAaaaaa                                                              ]


>consensus_13458#1 CCAAAGNAAGTCCAAGCATCCACCAGTGATGAAAATGCAAGTATNCACTCCAGGCTTAGG GACATACCGGCCTGGTCTCTCCAAACCAATGCTGACAAGTCGGATGCTAATCAGCTAGAG AAACTGAAGAAACTGCTGACAAATGCTTTGAGGGATACGAAATCAAAGAAGATGTTGGCA AANCAAAATGGTGAAGGGAGTAGGAGCAGAGCAAACTCCAGTGGCTCTAGGGGGCAGGAG GAAGGAAGTGCATGAGCAGGAAGCACAGGTGTCCTGTGCATAAGTTTGGCAGTGCATGCA CCTCCCAAATTAAAAAGCTAATAAAAAAAAGAGAAAATGGTGCATGCTCTGTTTGCTGCC AGTTTCTCCCACTGATTGATCCCAGGTAGAGAAAAGAGTTGCCATGGCCTCTGGCTCTGC TTGTTAGATCAAGGGGGGGAGATGGAATAAAAGGATGGGGAAGTATTCAGGTTCTTGTAA TGAAGACCTATGCTGTGGTGTTTTAGCAATGTTTGATATGTGTGCTACCTGTGTTTGACT GGTTGTGTTGCTTGATGTGTCATCTGACCATGATACTGAAAGCCTGATAATTGCACTGAC TTGTGTATGGAGTTTGTTTCAACCTATTGGTATGAATCTGTTTGATTCTGTAGGAACTGT GGTTTGCTGTTTGCCAAAAAAAAAAAAAA



consensusID : consensus_13458#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 216
fasta sequence
                              [ACGCACGCACGGCTCCGTTTTCCCCCACCNACGAGAGGCGTAGAGGGAGGGGAGCTAGGGTTTTTCGTGGCGAGGATGNCGNGTAGANGGAGAGTNCAGCTTAGGCGTATCNAGGACAAGNCGAGCCGGCAGGTGCGGTTCTCCAAGAGGAGGGCGGGGCTGTTCAAGAAGNCGTTCGAGCTCGNCCTGCTCTNCGACGCNCAGGTGGCGATCCTC]

[+] EMBL OSS10304A            [ACGCACGCACGGCTCCGTTTTCCCCCACCNACGAGAGGCGTAGAGGGAGGGGAGCTAGGGTTTTTCGTGGCGAGGATGNCGNGTAGANGGAGAGTNCAGCTTAGGCGTATCNAGGACAAGNCGAGCCGGCAGGTGCGGTTCTCCAAGAGGAGGGCGGGGCTGTTCAAGAAGNCGTTCGAGCTCGNCCTGCTCTNCGACGCNCAGGTGGCGATCCTC]


>consensus_13458#2 ACGCACGCACGGCTCCGTTTTCCCCCACCNACGAGAGGCGTAGAGGGAGGGGAGCTAGGG TTTTTCGTGGCGAGGATGNCGNGTAGANGGAGAGTNCAGCTTAGGCGTATCNAGGACAAG NCGAGCCGGCAGGTGCGGTTCTCCAAGAGGAGGGCGGGGCTGTTCAAGAAGNCGTTCGAG CTCGNCCTGCTCTNCGACGCNCAGGTGGCGATCCTC



consensusID : consensus_13458#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 199
fasta sequence
                              [ATCAGCTAGAGAAACTGGAGAAACTGCTGACACAATGCTTTGAGGATACGAAATCAAAGAAGATGGTTGCAAAAACAAAATGGTGAAGGGAGTAGGACCAGACCAAACTCCAGTGCTTTAGGGGCAGGAGAAGTGCATGACCAGGAACACAGTGTCCTGGCATAATTGCAGCAGCCACCTCCCAAATTAAAAAGCTAAT]

[+] EMBL BI797424             [ATCAGCTAGAGAAACTGGAGAAACTGCTGACACAATGCTTTGAGGATACGAAATCAAAGAAGATGGTTGCAAAAACAAAATGGTGAAGGGAGTAGGACCAGACCAAACTCCAGTGCTTTAGGGGCAGGAGAAGTGCATGACCAGGAACACAGTGTCCTGGCATAATTGCAGCAGCCACCTCCCAAATTAAAAAGCTAAT]


>consensus_13458#3 ATCAGCTAGAGAAACTGGAGAAACTGCTGACACAATGCTTTGAGGATACGAAATCAAAGA AGATGGTTGCAAAAACAAAATGGTGAAGGGAGTAGGACCAGACCAAACTCCAGTGCTTTA GGGGCAGGAGAAGTGCATGACCAGGAACACAGTGTCCTGGCATAATTGCAGCAGCCACCT CCCAAATTAAAAAGCTAAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13458#1      ------------------------------------------------------------
consensus_13458#3      ------------------------------------------------------------
consensus_13458#0      CCTCNCTCCTCCCCCACTTCTCCCCACCACCACACCACCACACACACGCACGCACGCACG 60
consensus_13458#2      ------------------------------------------------------------
                                                                                   

consensus_13458#1      ------------------------------------------------------------
consensus_13458#3      ------------------------------------------------------------
consensus_13458#0      CACGCCTCCGTTTTCCCCCACCGACGAGAGGCGGAGAGGGAGGGGAGCTAGGGTTTTTCG 120
consensus_13458#2      ------------------------------------------------------------
                                                                                   

consensus_13458#1      ------------------------------------------------------------
consensus_13458#3      ------------------------------------------------------------
consensus_13458#0      GGGCGGGGATGGCGCGGAGGGGGAGAGTGCAGCTGAGGCGGATCGAGGACAAGGCGAGCC 180
consensus_13458#2      ------------------------------------------------------------
                                                                                   

consensus_13458#1      ------------------------------------------------------------
consensus_13458#3      ------------------------------------------------------------
consensus_13458#0      GGCAGGTGCGGTTCTCCAAGAGGAGGGCGGGGCTGTTCAAGAAGGCGTTCGAGCTCGCCC 240
consensus_13458#2      ------------------------------------------------------------
                                                                                   

consensus_13458#1      ------------------------------------------------------------
consensus_13458#3      ------------------------------------------------------------
consensus_13458#0      TGCTCTGCGACGTGGAGGTGGCGCTCCTCGTCTTCTCCCCCGTCGGCAAGCTCTACGAGT 300
consensus_13458#2      ------------------------------------------------------------
                                                                                   

consensus_13458#1      ------------------------------------------------------------
consensus_13458#3      ------------------------------------------------------------
consensus_13458#0      ACTCCTCCTCCAGCATTGAAGGTACCTATGATCGCTATCAGCAATTCGCTGGAGCCAGGA 360
consensus_13458#2      ------------------------------------------------------------
                                                                                   

consensus_13458#1      ---------CCAAAGNAAGTCCAAGCATCCACCAGTGATGAAAATGCAAGTATNCACTCC 51
consensus_13458#3      ------------------------------------------------------------
consensus_13458#0      GAGACCTGAACGAAGGAAGTACAAGCATC-AACAGTGATGAAAATGCAAGTATACACTCC 419
consensus_13458#2      ------------------------------------------------------------
                                                                                   

consensus_13458#1      AGGCTTAGGGACATACCGGCCTGGTCTCTCCAAACCAATGCTGACAAGTCGGATGCTAAT 111
consensus_13458#3      ----------------------------------------------------------AT 2
consensus_13458#0      AGGCTTAGGGACATAACGGCCTGGTCTCTCCAAAACAATGCTGACGAGTCGGATGCTAAT 479
consensus_13458#2      -----------------------------------ACGCACGCACGGCTCCGTTTTCCCC 25
                                                                                   

consensus_13458#1      CAGCTAGAGAAACTGAAGAAACTGCTGACA-AATGCTTTGAGGGATACGAAATCAAAGAA 170
consensus_13458#3      CAGCTAGAGAAACTGGAGAAACTGCTGACACAATGCTTTGAGG-ATACGAAATCAAAGAA 61
consensus_13458#0      CAGCTAGAGAAACTGGAGAAACTGCTGACA-AATGCTTTGAGGGATACGAAATCAAAGAA 538
consensus_13458#2      CACCNACGAGAGGCGTAGAGGGAGGGGAGCTAGGGTTTTTCGTGGCGAGGATGNCGNGTA 85
                       ** * *    *   * ***    *  **   *  * ***  *      * *      * *

consensus_13458#1      GATGTTGGCAAAN-CAAAATGGTGAAGGGAGTAGGAGCAGAGCAAACTCCAGTGGCTCTA 229
consensus_13458#3      GATGGTTGCAAAAACAAAATGGTGAAGGGAGTAGGACCAGACCAAACTCCAGTG-CTTTA 120
consensus_13458#0      GATGTTGGCAAAA-CAAAATGGTGAAGGGAGTAGGAGCAGAGCAAACTCCAGTGGCTCTA 597
consensus_13458#2      GANGGAGAGTNCAGCTTA--GGCGTATCNAGGACAAGNCGAGCCGGCAGGTGCGGTTCTC 143
                       ** *          *  *  ** * *   ** *  *   ** *   *    * *  * * 

consensus_13458#1      GGGGGCAGGAGGAAGGAAGTGCATGAGCAGGAAGCACAGGT-GTCCTGTGCATAAGTTTG 288
consensus_13458#3      GGGG-CAGGAG-----AAGTGCATGACCAGGAA-CACAG-T-GTCCTG-GCATAATTGCA 170
consensus_13458#0      GGGGGCAGGAGGAAGGAAGTGCATGAGCAGGAAGCACAGGT-GTCCTGTGCATAAGTTTG 656
consensus_13458#2      CAAG--AGGAGGGCGGGGCTGTTCAAGAAGNCGTTCGAGCTCGNCCTGCTCTNCGACGCN 201
                          *  *****        **    *  **       ** * * ****  *         

consensus_13458#1      GCAGTGCATGCACCTCCCAAATTAAAAAGCTAATAAAAAAAA-GAGAAAATGGTGCATGC 347
consensus_13458#3      GCAGC-----CACCTCCCAAATTAAAAAGCTAAT-------------------------- 199
consensus_13458#0      GCAGTGCATGCACCTCCCAAATTAAAAAGCTAATAAAAAAAAAGAGAAAATGGTGCATGC 716
consensus_13458#2      CAGGTG---GCGATCCTC------------------------------------------ 216
                          *      *    * *                                          

consensus_13458#1      TCTGTTTGCTGCCAGTTTCTCCCACTGATTGATCCCAGGTAGAGAAAAGAGTTGCCATGG 407
consensus_13458#3      ------------------------------------------------------------
consensus_13458#0      TCTGTTTGCTGCCAGTTTCTCCCACTGATTGATCCCAGGTAGAGAAAAGAGTTGCCATGG 776
consensus_13458#2      ------------------------------------------------------------
                                                                                   

consensus_13458#1      CCTCTGGCTCTGCTTGTTAGATCAAGGGGGGGAGATGGAATAAAAGGATGGGGAAGTATT 467
consensus_13458#3      ------------------------------------------------------------
consensus_13458#0      CCTCTGGCTCTGCTTGTTAGATCAAGGGGGGGAGATGGAATAAAAGGATGGGGAAGTATT 836
consensus_13458#2      ------------------------------------------------------------
                                                                                   

consensus_13458#1      CAGGTTCTTGTAATGAAGACCTATGCTGTGGTGTTTTAGCAATGTTTGATATGTGTGCTA 527
consensus_13458#3      ------------------------------------------------------------
consensus_13458#0      CAGGTTCTTGTAATGAAGACCTATGCTGTGGTGTTTTAGCAATGTTTGATGTGTGTGCTA 896
consensus_13458#2      ------------------------------------------------------------
                                                                                   

consensus_13458#1      CCTGTGTTTGACTGGTTGTGTTGCTTGATGTG--TCATCTGACCATGATACTGAAAGCCT 585
consensus_13458#3      ------------------------------------------------------------
consensus_13458#0      CCTGTGTTTGACTGGTTGTGTTGCTTGATGTGAGTCATCTGACCATGATACTGAAAGCCT 956
consensus_13458#2      ------------------------------------------------------------
                                                                                   

consensus_13458#1      GATAATTGCACTGACTTGTGTATGGAGTTTGTTTCAACCTATTGGTATGAATCTGTTTGA 645
consensus_13458#3      ------------------------------------------------------------
consensus_13458#0      GATAATTGCACTGACTTGTGTATGGAGTTTGTTTCAACCTATTGGTATGAATCTGTTTGA 1016
consensus_13458#2      ------------------------------------------------------------
                                                                                   

consensus_13458#1      TTCTGTAGGAACTGTGGTTTGCTGTTTGCCAAAAAAAAAAAAAA---------------- 689
consensus_13458#3      ------------------------------------------------------------
consensus_13458#0      TTCTGTAGGAACTGTGGTTTGCTGTTTGCCAGATCTGATTATTACGCGTGATACAATCTG 1076
consensus_13458#2      ------------------------------------------------------------
                                                                                   

consensus_13458#1      ------------------------------------------------------------
consensus_13458#3      ------------------------------------------------------------
consensus_13458#0      TCCTTATTATGTCTAGGGACCCTTATGTCTATGTGTGTTGTTTATTCGAATCTGGCAGTG 1136
consensus_13458#2      ------------------------------------------------------------
                                                                                   

consensus_13458#1      ------------------------------------------------------------
consensus_13458#3      ------------------------------------------------------------
consensus_13458#0      AACAATCTGACGAGGAACTGAAAATAACTGATAGATGGTTACGTTGCTGTATCTGTAAGT 1196
consensus_13458#2      ------------------------------------------------------------
                                                                                   

consensus_13458#1      ------------------------------------------------------------
consensus_13458#3      ------------------------------------------------------------
consensus_13458#0      GTGAGTGAGTGGATGCTTATACAATCTTATTTTTAAATAATTATAAGTTGTGCCTGCGTC 1256
consensus_13458#2      ------------------------------------------------------------
                                                                                   

consensus_13458#1      --
consensus_13458#3      --
consensus_13458#0      GG 1258
consensus_13458#2      --
                         




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)