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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13459#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 791 fasta sequence
[TTTTTTTTATAACA-ACAGGACTTGATCAATTTATTTCATCATTTTTTTATTACCAGTATTGTCCTTGGAGCAGCAATAACAGCCAGTGTCAAC-GG-GAGAAAAATATTACATCATCAAAGCCGAGTTTATGACCCTACAAAAGTTGAATTCGCTTTGCGCTCTCAGTACAAACTCTCCGAATGACATAGTTTCAGCTACACTCCCTTGGGGAGCCCCGTGACCGAATCGATCAA-TGCTAGGCTTTCGTCAGTGACAACTTTTGGGCCAGCTCCAAGCCTGCTACAGATGAAGTAGCTCACATCTCCCTTGAATTTTTGGC-TCGGCATCTTCGTCTCGGCAGGAGCTGGGAGGGCCTCCACATCTTCTATCGATTTCAGTCCAGCATCGCTTAGAATCGACTTGTCGCCAACCATATAGCTGCTGAGATCATTATCTTGAGGAGGGA-AATAATACAAGAGCTTCTGAAGGAGAATGGTTGCATTTTTGCGGTTTGGTGCGATTAGGACA-GCATTGGG-CCCAGCATCGAAGGTGTAAGCAACCTGTGGGGTTCCTTCTGACTGGTT-CCACTTCTCCACAAGGCTAATTATCCTGTGTGATGTATCGTTCATATAGAAGATGGGAGGGCTCGTGTCCAAACATACAGCATGAAATTGGTTGCTATCTGCACAAGTTAACCTGGCAAAGGACTCAAAATTACGAGACTTGATAGCCTCTTCCATTTTCAACACCCGTTCTGGAACTACAGTCTGGGCCCTATATTGNCAAAGGGGACTTGTTTCAACACTGTCTCG]
[-] EMBL BI806977 [TTTTTTTTTTANCAGACAGGACTTGATCAATTTATTTCATCATTTTTTTATTACCAGTA TGTCCTTGGAGCAGCAATAACAGCCAGTGTCAAC GG GAGAAAAATATTACATCATCAAAGCCGAGTTTATGACCCTACAAAAGTTGAATTCGCTTTGCGCTCTCAGGACAAACTCTCCGAATGACATAGTTTCAGCTACACTCCCTTGGGGAGCCCCGTGACCGAATCGATCAA TGCTAGGCTTTCGTCAGTGACAACTTTTGGGCCAGCTCCAAGCCTGCTACAGATGAAGTAGCTCACATCTCCCTTGGAATTTTGGCATCGGCATCTTCGTCTCGGCAGGAGCTGGGAGGGCCTCCACATCTTCTATCGATTTCAGTCCAGCATCGCTTAGAATCGACTTGTCGCCAACCATATAGCTGCTGAGATCATTATCTTGAGGAGGGACANTAATACAAGAGCTTCTGAAGGAGAATGGTTGCA TAGCGG AAGGTGCGATTAGGACAGGCATTGGGCCCCAGCAT GAA GTGTAAGCAACCTGTGGGGTTCCTTCTG CGGGTTCCCACTTCTCCA AAG TAATTATCCTGTGTGATGTAT ]
[-] EMBL BI806148 [ TTTTTATATAACA ACAGGACTTGATCAATTTATTTCATCATTTTTTTATTACCAGTATTGTCCTTGGAGCAGCAATAACAGCCAGTGTCAAC GG GAGAAAAATATTACATCATCAAAGCCGAGTTTATGACCCTACAAAAGTTGAATTCGCTTTGCGCTCTCAGTACAAACTCTCCGAATGACATAGTTTCAGCTACACTCCCTTGGGGAGCCCCGTGANCGAATCGATCAATTGCTAGGCTTTCGTCAGTGACAACTTTTGGGCCAGCTCCAAGCCTGCTACAGATGAAGTAGCTCACATCTCCCTTGAATTTTTGGC TCGGCATCTTCGTCTCGGCAGGAGCTGGGAGGGCCTCCACATCTTCTATCGATTTCAGTCCAGCATCGCTTAGAATCGA ]
[-] EMBL AU197268 [ TTTTTATAACA ACAGGACTTGATCAATTTATTTCATCATTTTTTTATTACCAGTATTGTCCTTGGAGCAGCAATAACAGCCAGTGTCAAC GGNGAGAAAAATATTACATCATCAAAGCCGAGTTTATGACCCTACAAAAGTTGAATTCGCTTTGCGCTCTCAGTACAAACTCTCCGAATGACATAGTTTCAGCTACACTCCCTTGGGGAGCCCCGTGACCGAATCGATCAA TGCTAGGCTTTCGTCAGTGACAACTTTTGGGCCAGCTCCAAGCCTGCTACAGATGAAGTAGCTCACATCTCCCTTGAATTTTTGGC TCGGCATCTTCGTCTCGGCAGGAGCTGGGAGGGCCTCCACATCTTCTATCGATTTCAGTCCAGCATCGCTTAGAATCGACTTGTCGCCAACCATATAGCTGCTGAGATCATTATCTTGAGGAGGGA AAT ]
[-] EMBL AU197267 [ TTTTTATAACA ACAGGACTTGATCAATTTATTTCATCATTTTTTTATTACCAGTATTGTCCTTGGAGCAGCAATAACAGCCAGTGTCAAC GGNGAGAAAAATATTACATCATCAAAGCCGAGTTTATGACCCTACAAAAGTTGAATTCGCTTTGCGCTCTCAGTACAAACTCTCCGAATGACATAGTTTCAGCTACACTCCCTTGGGGAGCCCCGTGACCGAATCGATCAA TGCTAGGCTTTCGTCAGTGACAACTTTTGGGCCAGCTCCAAGCCTGCTACAGATGAAGTAGCTCACATCTCCCTTGAATTTTTGGC TCGGCATCTTCGTCTCGGCAGGAGCTGGGAGGGCCTCCACATCTTCTATCGATTTCAGTCCAGCATCGCTTAGAATCGACTTGTCGCCAACCATATAGCTGCTGAGATCATTATCTTGAGGAGGGA AAT ]
[-] EMBL AU092333 [ tttttTTGATCAATTTATTTCATCATTTTTTTATTACCAGTATTGTCCTTGGAGCAGCAATAACAGCCAGTGTCAACGGG GAGAAAAATATTACATCATCAAAGCCGAGTTTATGACCCTACAAAAGTTGAATTCGCTTTGCGCTCTCAGTACAAACTCTCCGAATGACATAGTTTCAGCTACACTCCCTTGGGGAGCCCCGTGACCGAATCGATCAA TGCTAGGCTTTCGTCAGTGACAACTTTTGGGCCAGCTCCAAGCCTGCTACAGATGAAGTAGCTCACATCTCCCTTGAATTTTTGGC TCGGCATCTTCGTCTCGGCAGGANCT ]
[-] EMBL AU077918 [ tttTTGATCAATTTATTTCATCATTTTTTTATTACCAGTATTGTCCTTGGAGCAGCAATAACAGCCAGTGTCAAC GGAGAGAAAAATATTACATCATCAAAGCCGAGTTTATGACCCTACAAAAGTTGAATTCGCTTTGCGCTCNCAGTACAAACTCTCCGAATGACATAGTTTCAGCTACACTCCCTTNGGGAGCCCCGTGACCNAATCGNTCAA TNCNAGGCTTTCGTCAGTGACAACTTTTGGGCCAGCTCCAAGCCTGNTACAGATGANGTAGCTCACATCTCCCTTGAATTTTTGGC TCGGC ]
[-] EMBL AU077927 [ tttttTTGATCAATTTATTTCATCATTTTTTTATTACCAGTATTGTCCTTGGAGCAGCAATAACAGCCAGTGTCAACGGG GAGAAAAATATTACATCATCAAAGCCGAGTTTATGACCCTACAAAAGTTGAATTCGCTTTGCGCTCTCAGTACAAACTCTCCGAATGACATAGTTTCAGCTACACTCCCTTGGGGAGCCCCGTGACCGAATCGATCAA TGCTAGGCTTTCGTCAGTGACAACTTTTGGGCCAGCTCCAAGCCTGCTACAGATGAAGTAGCTCACATCTCCCTTGAATTTTTGGC TCGGCATCTTCGTCTCGGCAGGAGCTGGGAGGGCCTCCACATCTTCTATCGATTTCAGTCCAGCATCGCTTAGAATCGACTTGTCGCCAACCATATAGCTGCTGAGATCATTATCTTGAGGAGGGA AATAATACAAGAGCTTCTGAAGGAGAATGGTTGCATTTTTGCGGTTTGGTGCGATTAGGACA GCATTGGG GCCAGCATCGAAGGTGTAAGCAACCTGTGGGGNTCCTTCTGACTGGTT CCACTTCTCCACAAGGCTAATTATCCCGTGTGATGTATCGGTCATATAGAAGATGGGAAGGCTCGTGTCCAAACATACAGCATGAAATTGGGTGCTATCTGCACAAGTTAAa ]
[+] EMBL CB622473 [ t ctttttagTGATCAATTTATTTCATCATTTTTTTATTACCCCTATTGTCCTTGGAGCAGCAATAACAGCCAGTGTCAAC GG GAGAAAAATATTACATCATCAAAGCCGAGTTTATGACCCTACAAAAGTTGAATTCGCTTTGCGCTCTCAGTACAAACTCTCCGAATGACATAGTTTCAGCTACACTCCCTTGGGGAGCCCCGTGACCGAATCGATCAA TGCTAGGCTTTCGTCAGTGACAACTTTTGGGCCAGCTCCAAGCCTGCTACAGATGAAGTAGCTCACATCTCCCTTGAATTTTTGGC TCGGCATCTTCGTCTCGGCAGGAGCTGGGAGGGCCTCCACATCTTCTATCGATTTCAGTCCAGCATCGCTTAGAATCGACTTGTCGCCAACCATATAGCTGCTGAGATCATTATCTTGAGGAGGGA AATAATACAAGAGCTTCTGAAGGAGAATGGTTGCATTTTTGCGGTTTGGTGCGATTAGGACA GCATTGGG CCCAGCATCGAAGGTGTAAGCAACCTGTGGGGTTCCTTCTGACTGGTT CCACTTCTCCACAAGGCTAATTATCCTGTGTGATGTATCGTTCATATAGAAGATGGGAGGGCTCGTGTCCAAACATACAGCATGAAATTGGTTGCTATCTGCACAAGTTAACCTGGCAAAGGACTCAAAATTACGAGACTTGATAGCCTCTTCCATTTTCAACACCCGTTCTGGAACTACAGTCTGGGCCCTATATTGNCAAAGGGGACTTGTTTCAACACTGTCTCG]
[+] EMBL CB634393 [ TTTTATTACCAGTACATAAAAAGGAGCAGCAATAACAGCCAGTGTCAAC GG GAGAAAAATATTACATCATCAAAGCCGAGTTTATCCCCCAACAAAAGTTGAATTCGCTTTGCGCTCTCAGTACAAACTCTCCGAATGACATAGTTTCAGCTACACTCCCTTGGGGAGCCCCGTGACCGAATCGATCAA TGCTAGGCTTTCGTCAGTGACAACTTTTGGGCCAGCTCCAAGCCTGCTACAGATGAAGTAGCTCACATCTCCCTTGAATTTTTGGC TCGGCATCTTCGTCTCGGCAGGAACTGGGAGGGCCTCCACATCTTCTATCGATTTCGGGCCAGCATCGCTTAGAATCGACTTGTCGCCAACCATATAGCTGCTGAGATCATTATCTTGAGGAGGGA AATAATACAAGAGCTTCTGAAGGAGAATGGTTGCATTTTTGCGGTTTGGTGCGATTAGGACA GCATTGGG CCCAGCATCGAAGGTGTAAGCAACCCGGGGGGTTCCTTCTGACTGGTT CCACTTCTCCACAAGGGTAATTATCCTGTGTGATGTATCGTTCATATAGAAGATGGGAGGGCTCGTGTCCAAACATACAGCATGAAATTGGTTGCTATCTGCACAAGTTAACCTGGCAAAGGACTCAAAATTACGAGACTTGATAGCCTCTTCCATTTTTAAC ]
[-] EMBL AU077917 [ TTGAATTC CTTTGCGCTCTCAGTACAAACTCTCCGAATGACATAGTTTCAGCTACACTCCCTTGGGGAGCCCCGTGACCGAATCGATCAA TGCTAGGCTTTCGTCAGTGACAACTTTTGGGCCAGCTCCAAGCCTGCTACAGATGAAGTAGCTCACATCTCCCTTGAATTTTTGGC TCGGCATCTTCGTCTCGGCAGGAGCTGGGAGGGCCTCCACATCTTCTATCGATTTCAGTCCAGCATCGCTTAGAATCGACTTGTCGCCAACCATATAGCTGCTGAGATCATTATCTTGAGGAGGGA AATAATACAAGAGCTTCTGAAGGAGAATGGTTGCATTTTTGCGGTTTGGTGCGATTAGGACA GCATTGGG CCCAGCATCGAAGGTGTAAG ]
[-] EMBL OSC29502 [ CGACTTGTCGCCAACCATATAGCTGCTGAGATCATTATCTTGAGGAGGGA AATAATACAAGAGCTTCTGAAGGAGAATGGTTGCATTTTTGCGGTTTGGTGCGATTAGGACA GCATTGGG CCCAGCATCGAAGGTGTAAGCAACCTGTGGGGTTCCTTCTGACTGGTT CCACTTCTCCACAAGGCTAATTATCCTGTGTGATGTATCGTTCATATAGAAGATGGGAGGGCTCGTGTCCAAACATACAGCATGAAATTGGTTGCTATCTGCACAAGTTAACCTGGCAAAGGACTCAAAATTACG ]
consensusID : consensus_13459#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 666 fasta sequence
[TCTCTCTCTCTCTCATCTCTCTCTCATCTCTCTCTGTCTCTGGGAGAAAAATATTACATCATCAAAGCCGAGTTTATGACCCTACAAAAGTTGAATTCGCTTTGCGCTCTCAGTACAAACTCTCCGAATGACATAGTTTCAGCTACACTCCCTTGGGGAGCCCCGGGACCGAATCGATCAATGCTAGGCTTTCGTCAGTGACAACTTTTGGGCCAGCTCCAAGCCTGCTACAGATGAAGTAGCTCACATCTCCCTTGAATTTTTGGCTCGGCATCTTCGTCTCGGCAGGAACTGGGAGGGCCTCCACATCTTCTATCGATTGCAGTCCAGCATCGCTTAGAATCGACTTGTCGCCAACCATATAGCTGCTGAGATCATTATCTTGAGGAGGGAAATAATACAAGAGCTTCTGAAGGAGAATGGTTGCATTTTTGCGGTTTGGGGCGATTAGGACAGCATTGGGCCCAGCATCAAAGGTGTAAGCAACCCGTGGGGTTCCTTCTGACTGGTTCCACTTCTCCACAAGGCTAATTATCCTGTGTGATGTATCGTTCATATAGAAGATGGGAGGGCTCGTGTCCAAACATACAGCATGAAATTGGTTGCTATCTGCACAAGTTAACCTGGCAAAGGACTCAAAATTACGAAAATTGATAGCCTCTTCCA]
[+] EMBL CB634392 [TCTCTCTCTCTCTCATCTCTCTCTCATCTCTCTCTGTCTCTGGGAGAAAAATATTACATCATCAAAGCCGAGTTTATGACCCTACAAAAGTTGAATTCGCTTTGCGCTCTCAGTACAAACTCTCCGAATGACATAGTTTCAGCTACACTCCCTTGGGGAGCCCCGGGACCGAATCGATCAATGCTAGGCTTTCGTCAGTGACAACTTTTGGGCCAGCTCCAAGCCTGCTACAGATGAAGTAGCTCACATCTCCCTTGAATTTTTGGCTCGGCATCTTCGTCTCGGCAGGAACTGGGAGGGCCTCCACATCTTCTATCGATTGCAGTCCAGCATCGCTTAGAATCGACTTGTCGCCAACCATATAGCTGCTGAGATCATTATCTTGAGGAGGGAAATAATACAAGAGCTTCTGAAGGAGAATGGTTGCATTTTTGCGGTTTGGGGCGATTAGGACAGCATTGGGCCCAGCATCAAAGGTGTAAGCAACCCGTGGGGTTCCTTCTGACTGGTTCCACTTCTCCACAAGGCTAATTATCCTGTGTGATGTATCGTTCATATAGAAGATGGGAGGGCTCGTGTCCAAACATACAGCATGAAATTGGTTGCTATCTGCACAAGTTAACCTGGCAAAGGACTCAAAATTACGAAAATTGATAGCCTCTTCCA]
consensusID : consensus_13459#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 321 fasta sequence
[TTTTTTTTTTGGATCAATTTATTTCATCATTTTTTTATTACCAGTATGTCCTTGGAGCAGCAATAACAGCCAGGGTCAACGGGAGAAAAATATTACATCATCAAAGCCGAGTTTATGACCCTACAAAAGTTGAATTCGCTTGGCGCTCTCAGTACAAACTCTCCGAATGACATAGTTTCAGCTACACTCCCTTGGGGAGCCCCGTGACCGAATCGATCAATGCTAGGCTTTCGTCAGTGACAACTTTTGGGCCAGCTCCAAGCCCTGCTACAGATGAAGTAGCTCACCCCAGCGTCCGCCAGCGTCGCCACGCGTCCGCCA]
[-] EMBL BI808460 [TTTTTTTTTTGGATCAATTTATTTCATCATTTTTTTATTACCAGTATGTCCTTGGAGCAGCAATAACAGCCAGGGTCAACGGGAGAAAAATATTACATCATCAAAGCCGAGTTTATGACCCTACAAAAGTTGAATTCGCTTGGCGCTCTCAGTACAAACTCTCCGAATGACATAGTTTCAGCTACACTCCCTTGGGGAGCCCCGTGACCGAATCGATCAATGCTAGGCTTTCGTCAGTGACAACTTTTGGGCCAGCTCCAAGCCCTGCTACAGATGAAGTAGCTCACCCCAGCGTCCGCCAGCGTCGCCACGCGTCCGCCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13459#0 TTTTTTTTATAACAACAGGACTTGATCAATTTATTTCATCATTTTTTTATTACCAGTATT 60
consensus_13459#1 ----------------------------------------------------TCTCTCTC 8
consensus_13459#2 -----------------------TTTTTTTTTTGGATCAATTTATTTCATCATTTTTTTA 37
* *
consensus_13459#0 GTCCTTGGAGCAGCAA----------TAACAGCCAGTGTCAACGGGAGAAAAATATTACA 110
consensus_13459#1 TCTCTCATCTCTCTCT----------CATCTCTCTCTGTCTCTGGGAGAAAAATATTACA 58
consensus_13459#2 TTACCAGTATGTCCTTGGAGCAGCAATAACAGCCAGGGTCAACGGGAGAAAAATATTACA 97
* * * * *** *****************
consensus_13459#0 TCATCAAAGCCGAGTTTATGACCCTACAAAAGTTGAATTCGCTTTGCGCTCTCAGTACAA 170
consensus_13459#1 TCATCAAAGCCGAGTTTATGACCCTACAAAAGTTGAATTCGCTTTGCGCTCTCAGTACAA 118
consensus_13459#2 TCATCAAAGCCGAGTTTATGACCCTACAAAAGTTGAATTCGCTTGGCGCTCTCAGTACAA 157
******************************************** ***************
consensus_13459#0 ACTCTCCGAATGACATAGTTTCAGCTACACTCCCTTGGGGAGCCCCGTGACCGAATCGAT 230
consensus_13459#1 ACTCTCCGAATGACATAGTTTCAGCTACACTCCCTTGGGGAGCCCCGGGACCGAATCGAT 178
consensus_13459#2 ACTCTCCGAATGACATAGTTTCAGCTACACTCCCTTGGGGAGCCCCGTGACCGAATCGAT 217
*********************************************** ************
consensus_13459#0 CAATGCTAGGCTTTCGTCAGTGACAACTTTTGGGCCAGCTCCAAGCC-TGCTACAGATGA 289
consensus_13459#1 CAATGCTAGGCTTTCGTCAGTGACAACTTTTGGGCCAGCTCCAAGCC-TGCTACAGATGA 237
consensus_13459#2 CAATGCTAGGCTTTCGTCAGTGACAACTTTTGGGCCAGCTCCAAGCCCTGCTACAGATGA 277
*********************************************** ************
consensus_13459#0 AGTAGCTCACATCTCCCTTGAATTTTTGGCTCGGCATCTTCGTCTCGGCAGGAGCTGGGA 349
consensus_13459#1 AGTAGCTCACATCTCCCTTGAATTTTTGGCTCGGCATCTTCGTCTCGGCAGGAACTGGGA 297
consensus_13459#2 AGTAGCTCACCCCAGCGTCCG-CCAGCGTCGCCACGCGTCCGCCA--------------- 321
********** * * * * * * * * ** *
consensus_13459#0 GGGCCTCCACATCTTCTATCGATTTCAGTCCAGCATCGCTTAGAATCGACTTGTCGCCAA 409
consensus_13459#1 GGGCCTCCACATCTTCTATCGATTGCAGTCCAGCATCGCTTAGAATCGACTTGTCGCCAA 357
consensus_13459#2 ------------------------------------------------------------
consensus_13459#0 CCATATAGCTGCTGAGATCATTATCTTGAGGAGGGAAATAATACAAGAGCTTCTGAAGGA 469
consensus_13459#1 CCATATAGCTGCTGAGATCATTATCTTGAGGAGGGAAATAATACAAGAGCTTCTGAAGGA 417
consensus_13459#2 ------------------------------------------------------------
consensus_13459#0 GAATGGTTGCATTTTTGCGGTTTGGTGCGATTAGGACAGCATTGGGCCCAGCATCGAAGG 529
consensus_13459#1 GAATGGTTGCATTTTTGCGGTTTGGGGCGATTAGGACAGCATTGGGCCCAGCATCAAAGG 477
consensus_13459#2 ------------------------------------------------------------
consensus_13459#0 TGTAAGCAACCTGTGGGGTTCCTTCTGACTGGTTCCACTTCTCCACAAGGCTAATTATCC 589
consensus_13459#1 TGTAAGCAACCCGTGGGGTTCCTTCTGACTGGTTCCACTTCTCCACAAGGCTAATTATCC 537
consensus_13459#2 ------------------------------------------------------------
consensus_13459#0 TGTGTGATGTATCGTTCATATAGAAGATGGGAGGGCTCGTGTCCAAACATACAGCATGAA 649
consensus_13459#1 TGTGTGATGTATCGTTCATATAGAAGATGGGAGGGCTCGTGTCCAAACATACAGCATGAA 597
consensus_13459#2 ------------------------------------------------------------
consensus_13459#0 ATTGGTTGCTATCTGCACAAGTTAACCTGGCAAAGGACTCAAAATTACGAGACTTGATAG 709
consensus_13459#1 ATTGGTTGCTATCTGCACAAGTTAACCTGGCAAAGGACTCAAAATTACGAAAATTGATAG 657
consensus_13459#2 ------------------------------------------------------------
consensus_13459#0 CCTCTTCCATTTTCAACACCCGTTCTGGAACTACAGTCTGGGCCCTATATTGNCAAAGGG 769
consensus_13459#1 CCTCTTCCA--------------------------------------------------- 666
consensus_13459#2 ------------------------------------------------------------
consensus_13459#0 GACTTGTTTCAACACTGTCTCG 791
consensus_13459#1 ----------------------
consensus_13459#2 ----------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||