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Oryza sativa
cluster # 1346 cluster # 1346       Sequences # 2       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1346#0 length = 1079 sequences # 2  

consensusID : consensus_1346#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1079
fasta sequence
                              [AAGAAGAGTCGAGAGGGCGGAACAGCAGGAGGCGGCGCAGGCGCAGATGGCGCGCTGGCGCCGTGATTGTTTCCGTGCCGGACGGAGAATAGTACGATGCTTGCTCTGTTTTGATAGGATCTGTTTATAAGTTTGTTACGATTAGTTTCCTTTCAATTAGCATCCGTTTGTTACATTTTGTATACCTATTTAAGGCAATTAATCTTAGAATAAAGGCAAGCAAGATCAAAGCTATCTCCTCATCTCCAGCTTCCTCTGTTTCTCATCTCTTTCTGTCGCTGTGTCCATCACGGGTCGCCGATCATTCTCCCCCGATCCGCCACAACCCATTTGGTGAGCTCAAGCGCCTCACGCAGACGAGCACCGTGGTGGCGTACCAGGAGTGTTTTCTGGCACTTACCAGTCGCATCCCAGACCCCCTCACCGAGAGTCAGCAAGTGCAACTTTTCATCGCCGGTCTTCAGGATGATATCAGCATCGACGTTGAACTGCAGAAGCCTGATGATCTCCAGGACGCCATGAGACTGCCTCGGGCGTACGAGTGGAAGGCCAACAAACCCGGCGCACCGCCGCGGAGGGTGTTTGCTCGCGCTGCGGCCGCCATCACACCGGACCCACCGCCAGCTGGTGGCTCTACCGCCGCAGACTCCATTCCCCGACAGTTCCGTCGACTCTCACCGGCCGAGCTCGCTGAACTGCGAAAGTGGTGCTCCCGGTGGGGAGGATAAGATAAGGATGACTTTGAGTTTGGATAGGTACGATTATTGCGGATTGACTACGTAAGGTTCCGCCTGCAAAAATCATATTTTTTTAGGTGGAGCACTTAAGAGTTCTGCCTATAAAAATAAAGGTATTTTGGTCTGCGTGGAAAAATTGATTTTCGTAGATGGACAACGAAATATAAAAAGGCATCCAAATATCTCTTTCTCATTGTAATGCACCACCAATAGTGAGCTATCTTGTTGCGTAAATCTGTCTTTATGATCCTCATAGCTGAAAAGAATCTTTCAACTGATGCTGTTGCCACTGGAAGGATCAATGTAAACCCAATGAGTCAATACACTAATGGAAAAGTCATG]

[+] EMBL AK110535             [AAGAAGAGTCGAGAGGGCGGAACAGCAGGAGGCGGCGCAGGCGCAGATGGCGCGCTGGCGCCGTGATTGTTTCCGTGCCGGACGGAGAATAGTACGATGCTTGCTCTGTTTTGATAGGATCTGTTTATAAGTTTGTTACGATTAGTTTCCTTTCAATTAGCATCCGTTTGTTACATTTTGTATACCTATTTAAGGCAATTAATCTTAGAATAAAGGCAAGCAAGATCAAAGCTATCTCCTCATCTCCAGCTTCCTCTGTTTCTCATCTCTTTCTGTCGCTGTGTCCATCACGGGTCGCCGATCATTCTCCCCCGATCCGCCACAACCCATTTGGTGAGCTCAAGCGCCTCACGCAGACGAGCACCGTGGTGGCGTACCAGGAGTGTTTTCTGGCACTTACCAGTCGCATCCCAGACCCCCTCACCGAGAGTCAGCAAGTGCAACTTTTCATCGCCGGTCTTCAGGATGATATCAGCATCGACGTTGAACTGCAGAAGCCTGATGATCTCCAGGACGCCATGAGACTGCCTCGGGCGTACGAGTGGAAGGCCAACAAACCCGGCGCACCGCCGCGGAGGGTGTTTGCTCGCGCTGCGGCCGCCATCACACCGGACCCACCGCCAGCTGGTGGCTCTACCGCCGCAGACTCCATTCCCCGACAGTTCCGTCGACTCTCACCGGCCGAGCTCGCTGAACTGCGAAAGTGGTGCTCCCGGTGGGGAGGATAAGATAAGGATGACTTTGAGTTTGGATAGGTACGATTATTGCGGATTGACTACGTAAGGTTCCGCCTGCAAAAATCATATTTTTTTAGGTGGAGCACTTAAGAGTTCTGCCTATAAAAATAAAGGTATTTTGGTCTGCGTGGAAAAATTGATTTTCGTAGATGGACAACGAAATATAAAAAGGCATCCAAATATCTCTTTCTCATTGTAATGCACCACCAATAGTGAGCTATCTTGTTGCGTAAATCTGTCTTTATGATCCTCATAGCTGAAAAGAATCTTTCAACTGATGCTGTTGCCACTGGAAGGATCAATGTAAACCCAATGAGTCAATACACTAATGGAAAAGTCATG]
[-] EMBL AK062769             [                                                                                                                                                GTTTCCTTTCAATTAGCATCCGTTTGTTACATTTTGTATACCTATTTAAGGCAATTAATCTTAGAATAAAGGCAAGCAAGATCAAAGCTATCTCCTCATCTCCAGCTTCCTCTGTTTCTCATCTCTTTCTGTCGCTGTGTCCATCACGGGTCGCCGATCATTCTCCCCCGATCCGCCACAACCCATTTGGTGAGCTCAAGCGCCTCACGCAGACGAGCACCGTGGTGGCGTACCAGGAGTGTTTTCTGGCACTTACCAGTCGCATCCCAGACCCCCTCACCGAGAGTCAGCAAGTGCAACTTTTCATCGCCGGTCTTCAGGATGATATCAGCATCGACGTTGAACTGCAGAAGCCTGATGATCTCCAGGACGCCATGAGACTGCCTCGGGCGTACGAGTGGAAGGCCAACAAACCCGGCGCACCGCCGCGGAGGGTGTTTGCTCGCGCTGCGGCCGCCATCACACCGGACCCACCGCCAGCTGGTGGCTCTACCGCCGCAGACTCCATTCCCCGACAGTTCCGTCGACTCTCACCGGCCGAGCTCGCTGAACTGCGAAAGTGGTGCTCCCGGTGGGGAGGATAAGATAAGGATGAC                                                                                                                                                                                                                                                                                                                                                   ]


>consensus_1346#0 AAGAAGAGTCGAGAGGGCGGAACAGCAGGAGGCGGCGCAGGCGCAGATGGCGCGCTGGCG CCGTGATTGTTTCCGTGCCGGACGGAGAATAGTACGATGCTTGCTCTGTTTTGATAGGAT CTGTTTATAAGTTTGTTACGATTAGTTTCCTTTCAATTAGCATCCGTTTGTTACATTTTG TATACCTATTTAAGGCAATTAATCTTAGAATAAAGGCAAGCAAGATCAAAGCTATCTCCT CATCTCCAGCTTCCTCTGTTTCTCATCTCTTTCTGTCGCTGTGTCCATCACGGGTCGCCG ATCATTCTCCCCCGATCCGCCACAACCCATTTGGTGAGCTCAAGCGCCTCACGCAGACGA GCACCGTGGTGGCGTACCAGGAGTGTTTTCTGGCACTTACCAGTCGCATCCCAGACCCCC TCACCGAGAGTCAGCAAGTGCAACTTTTCATCGCCGGTCTTCAGGATGATATCAGCATCG ACGTTGAACTGCAGAAGCCTGATGATCTCCAGGACGCCATGAGACTGCCTCGGGCGTACG AGTGGAAGGCCAACAAACCCGGCGCACCGCCGCGGAGGGTGTTTGCTCGCGCTGCGGCCG CCATCACACCGGACCCACCGCCAGCTGGTGGCTCTACCGCCGCAGACTCCATTCCCCGAC AGTTCCGTCGACTCTCACCGGCCGAGCTCGCTGAACTGCGAAAGTGGTGCTCCCGGTGGG GAGGATAAGATAAGGATGACTTTGAGTTTGGATAGGTACGATTATTGCGGATTGACTACG TAAGGTTCCGCCTGCAAAAATCATATTTTTTTAGGTGGAGCACTTAAGAGTTCTGCCTAT AAAAATAAAGGTATTTTGGTCTGCGTGGAAAAATTGATTTTCGTAGATGGACAACGAAAT ATAAAAAGGCATCCAAATATCTCTTTCTCATTGTAATGCACCACCAATAGTGAGCTATCT TGTTGCGTAAATCTGTCTTTATGATCCTCATAGCTGAAAAGAATCTTTCAACTGATGCTG TTGCCACTGGAAGGATCAATGTAAACCCAATGAGTCAATACACTAATGGAAAAGTCATG



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)