These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13465#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1264 fasta sequence [TCCGTCCGGCCACCTCCCCTTCCTCCTCCATCATCTCACCGGGTGCGCTTCCCCTCCCCTTCGTACAACGAAGATTTGCTATTCGCCAGGGCCCAACCACAGTTATAGCTCACGTAGCCGCTACAGGCTTCTTCGCCGCCTCGTCTCCTCCTCGATCTCCCTTCCTCCCTAGAAAATCTCTCGGATCTCGCCGAGAGCTAGCGGCTGGCTGGCGGCGGTGGCGCGGTGGCAGCAAAGTGTACGCTTTGCAGTTGCTGCCGGCGCGGCGCGGC-AGGGTTGACGACGAAGAGGGAGGAGGAGAGAGGCTGTGTCGGGTTTGTGTTGTGTTTGTGTGTGT-AGTGTGAGATCTGGAGACGGCCGGGAGGATGGCGCGCGGCGGGAGCTTCTCGCGGCTGCGGCTGCGCGCGGGGGTCGTTGTCGCCGCCGCCGCCGCCGCCCTGCTCCTCTTCGCCGTCGTCGCGCCGCCCGCCGCGGCGTTCAACATCGGCCTCCAGTCCGCCGGCGACGG-GCG-AGCAAGGCCGGGTTGTGCAGCCGCACGTGCGAGTCCGACCACTGCACGACGCCGCCGTTGCTGCGCTACGGCAAGTACTGCGGCATCCTGTACAGCGGCTGCCCCGGCGAGCAGCCGTGCGACGAGCTCGACGCCTGCTGCATGCACCACGACAACTGCGTCCAGGCCAAGAATGACTACCTGAGCACGGCGTGCAACGAG-GAGTTGCTGGAGTGCCTGGCGAGGCTGCGGGAGGGCTCGTCGACGTTCCAGGGGAACAAGTGCATGA-TCGACGAGGTCATCGACGTGATCTCGCTCG-TCATCGAGGCCGCCGTCGTCGCCGGCAGGCTGCTGCACAAGCCTTAGCTTACATAGCCTCAGCCGTGCTGCAGGCACCACCCCTGCCGGCGGCGAACGGCGGCCGGATCGACGGCATGGGCGGCGCGAAGGATGAGCAGTATTGTCCTCTAACTTCGAATCACTGACGTGTAGGTCCAGTAGATGTGGGGCCTACATGTCAGTCAGTCACAGTCAATAATGACC-GTACTACAGAGGATAAAGTGCTTGTGCGTTATTGGGTGGGTGGTACATGTTTTGCTTGCTTGGTGTGTGTCAGTGTGTGTGTGTGTGTGCAGCTTAGCTAGCACCGGGCTGGCGGCTGCGTGCGTC-GCCTTCAACTTCACAGTTCACGTGGGCTCCCCCTTGACAGAGGCCCAGACTTACGACAAATATATGCAGATCACAAATATTACTACAAAAAATTGGAAAAAAAAA] [+] EMBL AK105828 [TCCGTCCGGCCACCTCCCCTTCCTCCTCCATCATCTCACCGGGTGCGCTTCCCCTCCCCTTCGTACAACGAAGATTTGCTATTCGCCAGGGCCCAACCACGGTTATAGCTCACGTAGCCGCTACAGGCTTCTTCGCCGCCTCGTCTCCTCCTCGATCTCCCTTCCTCCCTAGAAAATCTCTCGGATCTCGCCGAGAGCTAGCGGCTGGCTGGCGGCGGTGGCGCGGTGGCAGCAAAGTGTACGCTTTGCAGTTGCTGCCGGCGCGGCGCGGC AGCGGTGACGACGAAGAGGGAGGAGGAGAGAGGCTGTGTCGGGTTTGTGTTGTGTTTGTGTGTGT AGTGTGAGATCTGGAGACGGCCGGGAGGATGGCGCGCGGCGGGAGCTTCTCGCGGCTGCGGCTGCGCGCGGGGGTCGTTGTCGCCGCCGCCGCCGCCGCCCTGCTCCTCTTCGCCGTCGTCGCGCCGCCCGCCGCGGCGCTCAACATCGGCCTCCAGTCCGCCGGCGACGGCGCG AGCAAGGCCGGGTTGTGCAGCCGCACGTGCGAGTCCGACCACTGCACGACGCCGCCGTTGCTGCGCTACGGCAAGTACTGCGGCATCCTGTACAGCGGCTGCCCCGGCGAGCAGCCGTGCGACGAGCTCGACGCCTGCTGCATGCACCACGACAACTGCGTCCAGGCCAAGAATGACTACCTGAGCACGGCGTGCAACGAG GAGTTGCTGGAGTGCCTGGCGAGGCTGCGGGAGGGCTCGTCGACGTTCCAGGGGAACAAGTGCATGA TCGACGAGGTCATCGACGTGATCTCGCTCG TCATCGAGGCCGCCGTCGTCGCCGGCAGGCTGCTGCACAAGCCTTAGCTTACATAGCCTCAGCCGTGCTGCAGGCACCACCCCTGCCGGCGGCGAACGGCGGCCGGATCGACGGCATGGGCGGCGCGAAGGATGAGCAGTATTGTCCTCTAACTTCGAATCACTGACGTGTAGGTCCAGTAGATGTGGGGCCTACATGTCAGTCAGTCACAGTCAATAATGACC GTACTACAGAGGATAAAGTGCTTGTGCGTTATTGGGTGGGTGGTACATGTTTTGCTTGCTTGGTGTGTGTCAGTGTGTGTGTGTGTGTGCAGCTTAGCTAGCACCGGGCTGGCGGCTGCGTGCGTC GCCTTCAACTTCACAGTTCACGTGGGCTCCCCCTTGACAGAGGCCCAGACTTACGACAAATATATGCAGATCAC ] [+] EMBL OSS3839A [ CTCACCGGGTGCNCTTCCCCTCCCCTTCGTACAACGAAGATTTNCTATTCGCCAGGGCCCAACCACAGTTATAGCTCACGTAGCCGCTACAGGCTTCTNCGCCGCCTCGTCTCCTCCTCGATCTCCCTTCCTCCCTAGAAAATNTCTNGGATCTNGCCGAGAGCTAGCGGCTGGCTGGCGGCGGTGGCGCGGTGGCAGC ] [+] EMBL OSS3262A [ TCACCGGGTGCGCTTCCCCTCCCCTTCGTACAACGAAGATTTGCTATTCGCCAGGGCCCAACCACAGTTATAGCTCACGTAGCCGCTACAGGCTTCTTCGCCGCCTCGTCTCCTCCTCGATCTCCCTTCCTCCCTAGAAAATCTCTCGGATCTCGCCGAGAGCTAGCGGCTGGCTGGCGGCGGTGGCGCGGTGGCAGCAAAGTGTACGCTTTGCAGTTNTTGCCGGCGCGGCGCGGCAAGGGTTGACGACGAAGAGGGAGGAGGAGAGAGGTTGTGTCGGGTTTATGTTGTGTTTGTGTGTGTAAGTGTGAGATCTG ] [+] EMBL OSS3909A [ TCACCGGGTGCGCTTCCCCTCCCCTTCGTACAACGAAGATTTGCTATTCGCCAGGGCCCAACCACAGTTATAGCTCACGTAGCCGCTACAGGCTTCTTCGCCGCCTCGTCTCCTCCTCGATCTCCCTTCCTCCCTAGAAAATCTCTCGGATCTCGCCGAGAGCTAGCGGCTGGCTGGCGGCGGTGGCGCGGTGGCAGCAAAGTGTACGCTTTGCAGTTGCTGCCGNCGCGGCGCGGC ANGGNTGACGACGAAGAGGGAGGAGGAGAGAGGCTGTTTCGGGTTTGTNTTGTGTTTGTGTGTNT AGTGTGAGATCTGGAGACGGCCGGGAGGATGGCGCGCGGCGGGAGTTTCTCGCGGCTGCGGCTGCGCGC ] [+] EMBL AU070193 [ CAGGGCCCAACCACAGTTATAGCTCACGTAGCCGCTACAGGCTTCTTCGCCGCCTCGTCTCCTCCTCGATCTCCCTTCCTCCCTAGAAAATCTCTCGGATCTCGCCGAGAGCTAGCGGCTGGCTGGCGGCGGTGGCGCGGTGGCAGCAAAGTGTACGCTTTGCAGTTGCTGCCGGCGCGGCGCGGC ANGGTNGACGACGAAGAGGGAGGAGGAGAGAGGCTGTGTCGGGTTTGTGTTGTGTTTGTGTGTGT AGTGTGAGATCTGGAGACGGCCGGGAGGATGGCGCGCGGCGGGAGCTTCTCGCGGCTGCGGCTGCGCGCGGGGGTCGTTGTCGCCGCCGNCGCCGCCGCCCTGCTNCTCTTCGCCGTCGTCGCGCCGCCCGCCGNGG GTTCAACATCGGCCTCCAATCCGCCGGCGACGG GCG gtangtac ] [+] EMBL OSC101912 [ GGCCCAACCACAGTTATAGCTCACGTAGCCGCTACAGGCTTCTTCGCCGCCTCGTCTCCTCCTCGATCTCCCTTCCTCCCTAGAAAATCTCTCGGATCTNGCCGAGAGCTAGCGGCTGGCTGGCGGCGGTGGCGCGGTGGCAGCAAAGTGTACGCTTTGCAGTTNCTGCCGGNGCGGCGCGGC AGGGATAACGACGAAGAGGGAGGAGGAGAGANGNTGTNTCGNGTTTGTGTTGT ] [+] EMBL OSS15149A [ TCCTCCCTAGAAAATCTCTCGGATCTCGCCGAGAGCTAGCGGCTGGCTGGCGGCGGTGGCGCGGTGGCAGCAAAGTGTACGCTTTGCAGTTGCTGCCGGCGCGGCGCGGC AGGGTTGACGACGAAGAGGGAGGAGGAGAGAGGCTGTGTCGGGTTTGTGTTGTGTTTGTGTGTNT AGTGTGAGATCTGGAGACGGCCGGGAGGATGGCGCGCGGCGGGAGCTTCTCGCGGCTGCGGCTGCGCGCGGGGGTCGTTNTCGCCGCCGCCGCCGCCGCCCTGCTCCTCTTCGCCGTCGTCGCGCCGCCCGCCGCGGCCTTCAACATCGGCCTCCAGTCCGCCG ] [+] EMBL AU070820 [ TCCGCCGGCGACGG GCGNAGCAAGGCCGGGTTGTGCAGCCGCACGTGCGAGTCCGACCACTGCACGACGCCGCCGTTGCTGCGCTACGGCAAGTACTGCGGCATCCTGTACAGCGGCTGCCCCGGCGAGCAGCCGTGCGACGAGCTCGACGCCTGCTGCATGCACCACGACAACTGCGTCCAGGCCAAGAATGACTACCTGAGCACGGCGTGCAACGAGNGAGTTGCTGGAGTGCCTGGCGAGGCTGCGGGAGGGCTCGTCGACGTTCCAGGGGAACAAGTGCATGATTCGACGAGGTCATCGACGTGATCTCGCTCGTTCATCGAGGCCGCCGTC ] [+] EMBL OSS14301A [ GCGTGCAACGAG GAGTTGCTGGAGTNCCTGGCGAGGCTGCGGGAGGGCTCGTCGACGTTCCAGGGGAACAAGTGCATNA TCGACGAGGTCATCGACGTGATCTCGCTCG TCATCGAGGCCGCCGTCGTCGCCGGCAGNTTGCTGCACAAGCCTTAGCTTACATAGCCTCAGCCGTGCTGCAGGNACCACCCCTGCCGGCGGCGAACGGCGGCCGGATCGACG ] [+] EMBL AU096559 [ CGTGCAACGAG GAGTTGCTGGAGTGCCTGGCGAGGCTGCGGGAGGGCTCGTCGACGTTCCAGGGGAACAAGTGCATGA TCGACGAGGTCATCGACGTGATCTCGCTCG TCATCGAGGCCGCCGTCGTCGCCGGCAGGCTGCTGCACAAGCCTTAGCTTACATAGCCTCAGCCGTGCTGCAGGCACCACCCCTGCCGGCGGCGAACGGCGGCCGGATCGACGGCATGGGCGGCGCGAAGGATGAGCAGTATTGTCCTCTAACTTCGAATCACTGACGTGTAGGTCCAGTAGATGTGGGGCCTACATGTCAGTCAGTCACAGTCAATAATGACC GTACTACAGAGGATAAAGTGCTTGTGCGTTATTGGGTGGGTGGTACATGTTTTGCTTGCTTGGTGTGTGTCAGTGTGTGTGTGTGTGTGCAGCTTAGCTAGCACCGGGCTGGCGGCTGCGTGCGTC GCCTTCAACTTCACAGTTCACGTGGGCTCCCCCTTGACAGAGGCCCAGACTTACGACAAATATATGCAGATCACAAATATTACTAAAAAA ] [+] EMBL AU184411 [ cgGGATNAGCGGCATGGGCGGCGCGAAGGATGAGCAGTATTGTCCTCTAACTTCGAATCACTGACGTGTAGGTCCAGTAGATGTGGGGCCTACATGTCAGTCAGTCACAGTCAATAATGACCNGTACTACAGAGGATAAAGTGCTTGTGCGTTATTGGGTGGGTGGTACATGTTTTGCTTGCTTGGTGTGTGTCAGTGTGTGTGTGTGTGTGCAGCTTAGCTAGCACCGGGCTGGCGGCTGCGTGCGTCTGCCTTCAACTTCACAGTTCACGTGGGCTCCCCCTTGACAGAGGCCCAGACTTACGACAAATATATGCAGATCACAAATATTACTACAAAAAA ] [+] EMBL AU198043 [ CGACGGCATGGGCGGCGCGAAGGATGAGCAGTATTGTCCTCTAACTTCGAATCACTGACGTGTAGGTCCAGTAGATGTGGGGCCTACATGTCAGTCAGTCACAGTCAATAATGACC GTACTACAGAGGATAAAGTGCTTGTGCGTTATTGGGTGGGTGGTACATGTTTTGCTTGCTTGGTGTGTGTCAGTGTGTGTGTGTGTGTGCAGCTTAGCTAGCACCGGGCTGGCGGCTGCGTGCGTC GCCTTCAACTTCACAGTTCACGTGGGCTCCCCCTTGACAGAGGCCCAGACTTACGACAAATATATGCAGATCACAAATATTACTACATGGTTTTGGAAAAAAAAA] consensusID : consensus_13465#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 405 fasta sequence [ATAGCCTCAGCCGTGCTGCANGGCACCACCCCTGCCGGCGGCGAACGGCGGCCGGATCGACGGCATGGGCGGNGCGAAGGATGAGCAGTATTGTCCTCTAACTTCGAATCACTGACGTGTAGGTCCAGTAGATGTGGGGCCTACATGTCAGTCAGTCNCAGTCAATAATGACCGTACTACAGAGGATAAAGTGCTTGTGCGTTATTGGGTGGGTGGTACATGTTTTGCTTGCTTGGTGTGTGTCAGTGTGTGTGTGTGTGTGCAGCTTAGCTAGCACCGGGCTGGCGGCTGCGTGCGTCGCCTTCAACTTCACAGTTCACGTGGGCTCCCCCTTGACAGAGGCCCAGACTTACGACAAATATATGCAGATCACAAATATTACTACATGGTTTTGGACTTCAAAAA] [+] EMBL AU101694 [ATAGCCTCAGCCGTGCTGCANGGCACCACCCCTGCCGGCGGCGAACGGCGGCCGGATCGACGGCATGGGCGGNGCGAAGGATGAGCAGTATTGTCCTCTAACTTCGAATCACTGACGTGTAGGTCCAGTAGATGTGGGGCCTACATGTCAGTCAGTCNCAGTCAATAATGACCGTACTACAGAGGATAAAGTGCTTGTGCGTTATTGGGTGGGTGGTACATGTTTTGCTTGCTTGGTGTGTGTCAGTGTGTGTGTGTGTGTGCAGCTTAGCTAGCACCGGGCTGGCGGCTGCGTGCGTCGCCTTCAACTTCACAGTTCACGTGGGCTCCCCCTTGACAGAGGCCCAGACTTACGACAAATATATGCAGATCACAAATATTACTACATGGTTTTGGACTTCAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13465#0 TCCGTCCGGCCACCTCCCCTTCCTCCTCCATCATCTCACCGGGTGCGCTTCCCCTCCCCT 60 consensus_13465#1 ------------------------------------------------------------ consensus_13465#0 TCGTACAACGAAGATTTGCTATTCGCCAGGGCCCAACCACAGTTATAGCTCACGTAGCCG 120 consensus_13465#1 ------------------------------------------------------------ consensus_13465#0 CTACAGGCTTCTTCGCCGCCTCGTCTCCTCCTCGATCTCCCTTCCTCCCTAGAAAATCTC 180 consensus_13465#1 ------------------------------------------------------------ consensus_13465#0 TCGGATCTCGCCGAGAGCTAGCGGCTGGCTGGCGGCGGTGGCGCGGTGGCAGCAAAGTGT 240 consensus_13465#1 ------------------------------------------------------------ consensus_13465#0 ACGCTTTGCAGTTGCTGCCGGCGCGGCGCGGCAGGGTTGACGACGAAGAGGGAGGAGGAG 300 consensus_13465#1 ------------------------------------------------------------ consensus_13465#0 AGAGGCTGTGTCGGGTTTGTGTTGTGTTTGTGTGTGTAGTGTGAGATCTGGAGACGGCCG 360 consensus_13465#1 ------------------------------------------------------------ consensus_13465#0 GGAGGATGGCGCGCGGCGGGAGCTTCTCGCGGCTGCGGCTGCGCGCGGGGGTCGTTGTCG 420 consensus_13465#1 ------------------------------------------------------------ consensus_13465#0 CCGCCGCCGCCGCCGCCCTGCTCCTCTTCGCCGTCGTCGCGCCGCCCGCCGCGGCGTTCA 480 consensus_13465#1 ------------------------------------------------------------ consensus_13465#0 ACATCGGCCTCCAGTCCGCCGGCGACGGGCGAGCAAGGCCGGGTTGTGCAGCCGCACGTG 540 consensus_13465#1 ------------------------------------------------------------ consensus_13465#0 CGAGTCCGACCACTGCACGACGCCGCCGTTGCTGCGCTACGGCAAGTACTGCGGCATCCT 600 consensus_13465#1 ------------------------------------------------------------ consensus_13465#0 GTACAGCGGCTGCCCCGGCGAGCAGCCGTGCGACGAGCTCGACGCCTGCTGCATGCACCA 660 consensus_13465#1 ------------------------------------------------------------ consensus_13465#0 CGACAACTGCGTCCAGGCCAAGAATGACTACCTGAGCACGGCGTGCAACGAGGAGTTGCT 720 consensus_13465#1 ------------------------------------------------------------ consensus_13465#0 GGAGTGCCTGGCGAGGCTGCGGGAGGGCTCGTCGACGTTCCAGGGGAACAAGTGCATGAT 780 consensus_13465#1 ------------------------------------------------------------ consensus_13465#0 CGACGAGGTCATCGACGTGATCTCGCTCGTCATCGAGGCCGCCGTCGTCGCCGGCAGGCT 840 consensus_13465#1 ------------------------------------------------------------ consensus_13465#0 GCTGCACAAGCCTTAGCTTACATAGCCTCAGCCGTGCTGCAGG-CACCACCCCTGCCGGC 899 consensus_13465#1 ---------------------ATAGCCTCAGCCGTGCTGCANGGCACCACCCCTGCCGGC 39 ******************** * **************** consensus_13465#0 GGCGAACGGCGGCCGGATCGACGGCATGGGCGGCGCGAAGGATGAGCAGTATTGTCCTCT 959 consensus_13465#1 GGCGAACGGCGGCCGGATCGACGGCATGGGCGGNGCGAAGGATGAGCAGTATTGTCCTCT 99 ********************************* ************************** consensus_13465#0 AACTTCGAATCACTGACGTGTAGGTCCAGTAGATGTGGGGCCTACATGTCAGTCAGTCAC 1019 consensus_13465#1 AACTTCGAATCACTGACGTGTAGGTCCAGTAGATGTGGGGCCTACATGTCAGTCAGTCNC 159 ********************************************************** * consensus_13465#0 AGTCAATAATGACCGTACTACAGAGGATAAAGTGCTTGTGCGTTATTGGGTGGGTGGTAC 1079 consensus_13465#1 AGTCAATAATGACCGTACTACAGAGGATAAAGTGCTTGTGCGTTATTGGGTGGGTGGTAC 219 ************************************************************ consensus_13465#0 ATGTTTTGCTTGCTTGGTGTGTGTCAGTGTGTGTGTGTGTGTGCAGCTTAGCTAGCACCG 1139 consensus_13465#1 ATGTTTTGCTTGCTTGGTGTGTGTCAGTGTGTGTGTGTGTGTGCAGCTTAGCTAGCACCG 279 ************************************************************ consensus_13465#0 GGCTGGCGGCTGCGTGCGTCGCCTTCAACTTCACAGTTCACGTGGGCTCCCCCTTGACAG 1199 consensus_13465#1 GGCTGGCGGCTGCGTGCGTCGCCTTCAACTTCACAGTTCACGTGGGCTCCCCCTTGACAG 339 ************************************************************ consensus_13465#0 AGGCCCAGACTTACGACAAATATATGCAGATCACAAATATTACTACAAAAAATTGGAAAA 1259 consensus_13465#1 AGGCCCAGACTTACGACAAATATATGCAGATCACAAATATTACTACATGGTTTTGGACTT 399 *********************************************** ***** consensus_13465#0 AAAAA- 1264 consensus_13465#1 CAAAAA 405 **** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||