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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13465#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1264 fasta sequence
[TCCGTCCGGCCACCTCCCCTTCCTCCTCCATCATCTCACCGGGTGCGCTTCCCCTCCCCTTCGTACAACGAAGATTTGCTATTCGCCAGGGCCCAACCACAGTTATAGCTCACGTAGCCGCTACAGGCTTCTTCGCCGCCTCGTCTCCTCCTCGATCTCCCTTCCTCCCTAGAAAATCTCTCGGATCTCGCCGAGAGCTAGCGGCTGGCTGGCGGCGGTGGCGCGGTGGCAGCAAAGTGTACGCTTTGCAGTTGCTGCCGGCGCGGCGCGGC-AGGGTTGACGACGAAGAGGGAGGAGGAGAGAGGCTGTGTCGGGTTTGTGTTGTGTTTGTGTGTGT-AGTGTGAGATCTGGAGACGGCCGGGAGGATGGCGCGCGGCGGGAGCTTCTCGCGGCTGCGGCTGCGCGCGGGGGTCGTTGTCGCCGCCGCCGCCGCCGCCCTGCTCCTCTTCGCCGTCGTCGCGCCGCCCGCCGCGGCGTTCAACATCGGCCTCCAGTCCGCCGGCGACGG-GCG-AGCAAGGCCGGGTTGTGCAGCCGCACGTGCGAGTCCGACCACTGCACGACGCCGCCGTTGCTGCGCTACGGCAAGTACTGCGGCATCCTGTACAGCGGCTGCCCCGGCGAGCAGCCGTGCGACGAGCTCGACGCCTGCTGCATGCACCACGACAACTGCGTCCAGGCCAAGAATGACTACCTGAGCACGGCGTGCAACGAG-GAGTTGCTGGAGTGCCTGGCGAGGCTGCGGGAGGGCTCGTCGACGTTCCAGGGGAACAAGTGCATGA-TCGACGAGGTCATCGACGTGATCTCGCTCG-TCATCGAGGCCGCCGTCGTCGCCGGCAGGCTGCTGCACAAGCCTTAGCTTACATAGCCTCAGCCGTGCTGCAGGCACCACCCCTGCCGGCGGCGAACGGCGGCCGGATCGACGGCATGGGCGGCGCGAAGGATGAGCAGTATTGTCCTCTAACTTCGAATCACTGACGTGTAGGTCCAGTAGATGTGGGGCCTACATGTCAGTCAGTCACAGTCAATAATGACC-GTACTACAGAGGATAAAGTGCTTGTGCGTTATTGGGTGGGTGGTACATGTTTTGCTTGCTTGGTGTGTGTCAGTGTGTGTGTGTGTGTGCAGCTTAGCTAGCACCGGGCTGGCGGCTGCGTGCGTC-GCCTTCAACTTCACAGTTCACGTGGGCTCCCCCTTGACAGAGGCCCAGACTTACGACAAATATATGCAGATCACAAATATTACTACAAAAAATTGGAAAAAAAAA]
[+] EMBL AK105828 [TCCGTCCGGCCACCTCCCCTTCCTCCTCCATCATCTCACCGGGTGCGCTTCCCCTCCCCTTCGTACAACGAAGATTTGCTATTCGCCAGGGCCCAACCACGGTTATAGCTCACGTAGCCGCTACAGGCTTCTTCGCCGCCTCGTCTCCTCCTCGATCTCCCTTCCTCCCTAGAAAATCTCTCGGATCTCGCCGAGAGCTAGCGGCTGGCTGGCGGCGGTGGCGCGGTGGCAGCAAAGTGTACGCTTTGCAGTTGCTGCCGGCGCGGCGCGGC AGCGGTGACGACGAAGAGGGAGGAGGAGAGAGGCTGTGTCGGGTTTGTGTTGTGTTTGTGTGTGT AGTGTGAGATCTGGAGACGGCCGGGAGGATGGCGCGCGGCGGGAGCTTCTCGCGGCTGCGGCTGCGCGCGGGGGTCGTTGTCGCCGCCGCCGCCGCCGCCCTGCTCCTCTTCGCCGTCGTCGCGCCGCCCGCCGCGGCGCTCAACATCGGCCTCCAGTCCGCCGGCGACGGCGCG AGCAAGGCCGGGTTGTGCAGCCGCACGTGCGAGTCCGACCACTGCACGACGCCGCCGTTGCTGCGCTACGGCAAGTACTGCGGCATCCTGTACAGCGGCTGCCCCGGCGAGCAGCCGTGCGACGAGCTCGACGCCTGCTGCATGCACCACGACAACTGCGTCCAGGCCAAGAATGACTACCTGAGCACGGCGTGCAACGAG GAGTTGCTGGAGTGCCTGGCGAGGCTGCGGGAGGGCTCGTCGACGTTCCAGGGGAACAAGTGCATGA TCGACGAGGTCATCGACGTGATCTCGCTCG TCATCGAGGCCGCCGTCGTCGCCGGCAGGCTGCTGCACAAGCCTTAGCTTACATAGCCTCAGCCGTGCTGCAGGCACCACCCCTGCCGGCGGCGAACGGCGGCCGGATCGACGGCATGGGCGGCGCGAAGGATGAGCAGTATTGTCCTCTAACTTCGAATCACTGACGTGTAGGTCCAGTAGATGTGGGGCCTACATGTCAGTCAGTCACAGTCAATAATGACC GTACTACAGAGGATAAAGTGCTTGTGCGTTATTGGGTGGGTGGTACATGTTTTGCTTGCTTGGTGTGTGTCAGTGTGTGTGTGTGTGTGCAGCTTAGCTAGCACCGGGCTGGCGGCTGCGTGCGTC GCCTTCAACTTCACAGTTCACGTGGGCTCCCCCTTGACAGAGGCCCAGACTTACGACAAATATATGCAGATCAC ]
[+] EMBL OSS3839A [ CTCACCGGGTGCNCTTCCCCTCCCCTTCGTACAACGAAGATTTNCTATTCGCCAGGGCCCAACCACAGTTATAGCTCACGTAGCCGCTACAGGCTTCTNCGCCGCCTCGTCTCCTCCTCGATCTCCCTTCCTCCCTAGAAAATNTCTNGGATCTNGCCGAGAGCTAGCGGCTGGCTGGCGGCGGTGGCGCGGTGGCAGC ]
[+] EMBL OSS3262A [ TCACCGGGTGCGCTTCCCCTCCCCTTCGTACAACGAAGATTTGCTATTCGCCAGGGCCCAACCACAGTTATAGCTCACGTAGCCGCTACAGGCTTCTTCGCCGCCTCGTCTCCTCCTCGATCTCCCTTCCTCCCTAGAAAATCTCTCGGATCTCGCCGAGAGCTAGCGGCTGGCTGGCGGCGGTGGCGCGGTGGCAGCAAAGTGTACGCTTTGCAGTTNTTGCCGGCGCGGCGCGGCAAGGGTTGACGACGAAGAGGGAGGAGGAGAGAGGTTGTGTCGGGTTTATGTTGTGTTTGTGTGTGTAAGTGTGAGATCTG ]
[+] EMBL OSS3909A [ TCACCGGGTGCGCTTCCCCTCCCCTTCGTACAACGAAGATTTGCTATTCGCCAGGGCCCAACCACAGTTATAGCTCACGTAGCCGCTACAGGCTTCTTCGCCGCCTCGTCTCCTCCTCGATCTCCCTTCCTCCCTAGAAAATCTCTCGGATCTCGCCGAGAGCTAGCGGCTGGCTGGCGGCGGTGGCGCGGTGGCAGCAAAGTGTACGCTTTGCAGTTGCTGCCGNCGCGGCGCGGC ANGGNTGACGACGAAGAGGGAGGAGGAGAGAGGCTGTTTCGGGTTTGTNTTGTGTTTGTGTGTNT AGTGTGAGATCTGGAGACGGCCGGGAGGATGGCGCGCGGCGGGAGTTTCTCGCGGCTGCGGCTGCGCGC ]
[+] EMBL AU070193 [ CAGGGCCCAACCACAGTTATAGCTCACGTAGCCGCTACAGGCTTCTTCGCCGCCTCGTCTCCTCCTCGATCTCCCTTCCTCCCTAGAAAATCTCTCGGATCTCGCCGAGAGCTAGCGGCTGGCTGGCGGCGGTGGCGCGGTGGCAGCAAAGTGTACGCTTTGCAGTTGCTGCCGGCGCGGCGCGGC ANGGTNGACGACGAAGAGGGAGGAGGAGAGAGGCTGTGTCGGGTTTGTGTTGTGTTTGTGTGTGT AGTGTGAGATCTGGAGACGGCCGGGAGGATGGCGCGCGGCGGGAGCTTCTCGCGGCTGCGGCTGCGCGCGGGGGTCGTTGTCGCCGCCGNCGCCGCCGCCCTGCTNCTCTTCGCCGTCGTCGCGCCGCCCGCCGNGG GTTCAACATCGGCCTCCAATCCGCCGGCGACGG GCG gtangtac ]
[+] EMBL OSC101912 [ GGCCCAACCACAGTTATAGCTCACGTAGCCGCTACAGGCTTCTTCGCCGCCTCGTCTCCTCCTCGATCTCCCTTCCTCCCTAGAAAATCTCTCGGATCTNGCCGAGAGCTAGCGGCTGGCTGGCGGCGGTGGCGCGGTGGCAGCAAAGTGTACGCTTTGCAGTTNCTGCCGGNGCGGCGCGGC AGGGATAACGACGAAGAGGGAGGAGGAGAGANGNTGTNTCGNGTTTGTGTTGT ]
[+] EMBL OSS15149A [ TCCTCCCTAGAAAATCTCTCGGATCTCGCCGAGAGCTAGCGGCTGGCTGGCGGCGGTGGCGCGGTGGCAGCAAAGTGTACGCTTTGCAGTTGCTGCCGGCGCGGCGCGGC AGGGTTGACGACGAAGAGGGAGGAGGAGAGAGGCTGTGTCGGGTTTGTGTTGTGTTTGTGTGTNT AGTGTGAGATCTGGAGACGGCCGGGAGGATGGCGCGCGGCGGGAGCTTCTCGCGGCTGCGGCTGCGCGCGGGGGTCGTTNTCGCCGCCGCCGCCGCCGCCCTGCTCCTCTTCGCCGTCGTCGCGCCGCCCGCCGCGGCCTTCAACATCGGCCTCCAGTCCGCCG ]
[+] EMBL AU070820 [ TCCGCCGGCGACGG GCGNAGCAAGGCCGGGTTGTGCAGCCGCACGTGCGAGTCCGACCACTGCACGACGCCGCCGTTGCTGCGCTACGGCAAGTACTGCGGCATCCTGTACAGCGGCTGCCCCGGCGAGCAGCCGTGCGACGAGCTCGACGCCTGCTGCATGCACCACGACAACTGCGTCCAGGCCAAGAATGACTACCTGAGCACGGCGTGCAACGAGNGAGTTGCTGGAGTGCCTGGCGAGGCTGCGGGAGGGCTCGTCGACGTTCCAGGGGAACAAGTGCATGATTCGACGAGGTCATCGACGTGATCTCGCTCGTTCATCGAGGCCGCCGTC ]
[+] EMBL OSS14301A [ GCGTGCAACGAG GAGTTGCTGGAGTNCCTGGCGAGGCTGCGGGAGGGCTCGTCGACGTTCCAGGGGAACAAGTGCATNA TCGACGAGGTCATCGACGTGATCTCGCTCG TCATCGAGGCCGCCGTCGTCGCCGGCAGNTTGCTGCACAAGCCTTAGCTTACATAGCCTCAGCCGTGCTGCAGGNACCACCCCTGCCGGCGGCGAACGGCGGCCGGATCGACG ]
[+] EMBL AU096559 [ CGTGCAACGAG GAGTTGCTGGAGTGCCTGGCGAGGCTGCGGGAGGGCTCGTCGACGTTCCAGGGGAACAAGTGCATGA TCGACGAGGTCATCGACGTGATCTCGCTCG TCATCGAGGCCGCCGTCGTCGCCGGCAGGCTGCTGCACAAGCCTTAGCTTACATAGCCTCAGCCGTGCTGCAGGCACCACCCCTGCCGGCGGCGAACGGCGGCCGGATCGACGGCATGGGCGGCGCGAAGGATGAGCAGTATTGTCCTCTAACTTCGAATCACTGACGTGTAGGTCCAGTAGATGTGGGGCCTACATGTCAGTCAGTCACAGTCAATAATGACC GTACTACAGAGGATAAAGTGCTTGTGCGTTATTGGGTGGGTGGTACATGTTTTGCTTGCTTGGTGTGTGTCAGTGTGTGTGTGTGTGTGCAGCTTAGCTAGCACCGGGCTGGCGGCTGCGTGCGTC GCCTTCAACTTCACAGTTCACGTGGGCTCCCCCTTGACAGAGGCCCAGACTTACGACAAATATATGCAGATCACAAATATTACTAAAAAA ]
[+] EMBL AU184411 [ cgGGATNAGCGGCATGGGCGGCGCGAAGGATGAGCAGTATTGTCCTCTAACTTCGAATCACTGACGTGTAGGTCCAGTAGATGTGGGGCCTACATGTCAGTCAGTCACAGTCAATAATGACCNGTACTACAGAGGATAAAGTGCTTGTGCGTTATTGGGTGGGTGGTACATGTTTTGCTTGCTTGGTGTGTGTCAGTGTGTGTGTGTGTGTGCAGCTTAGCTAGCACCGGGCTGGCGGCTGCGTGCGTCTGCCTTCAACTTCACAGTTCACGTGGGCTCCCCCTTGACAGAGGCCCAGACTTACGACAAATATATGCAGATCACAAATATTACTACAAAAAA ]
[+] EMBL AU198043 [ CGACGGCATGGGCGGCGCGAAGGATGAGCAGTATTGTCCTCTAACTTCGAATCACTGACGTGTAGGTCCAGTAGATGTGGGGCCTACATGTCAGTCAGTCACAGTCAATAATGACC GTACTACAGAGGATAAAGTGCTTGTGCGTTATTGGGTGGGTGGTACATGTTTTGCTTGCTTGGTGTGTGTCAGTGTGTGTGTGTGTGTGCAGCTTAGCTAGCACCGGGCTGGCGGCTGCGTGCGTC GCCTTCAACTTCACAGTTCACGTGGGCTCCCCCTTGACAGAGGCCCAGACTTACGACAAATATATGCAGATCACAAATATTACTACATGGTTTTGGAAAAAAAAA]
consensusID : consensus_13465#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 405 fasta sequence
[ATAGCCTCAGCCGTGCTGCANGGCACCACCCCTGCCGGCGGCGAACGGCGGCCGGATCGACGGCATGGGCGGNGCGAAGGATGAGCAGTATTGTCCTCTAACTTCGAATCACTGACGTGTAGGTCCAGTAGATGTGGGGCCTACATGTCAGTCAGTCNCAGTCAATAATGACCGTACTACAGAGGATAAAGTGCTTGTGCGTTATTGGGTGGGTGGTACATGTTTTGCTTGCTTGGTGTGTGTCAGTGTGTGTGTGTGTGTGCAGCTTAGCTAGCACCGGGCTGGCGGCTGCGTGCGTCGCCTTCAACTTCACAGTTCACGTGGGCTCCCCCTTGACAGAGGCCCAGACTTACGACAAATATATGCAGATCACAAATATTACTACATGGTTTTGGACTTCAAAAA]
[+] EMBL AU101694 [ATAGCCTCAGCCGTGCTGCANGGCACCACCCCTGCCGGCGGCGAACGGCGGCCGGATCGACGGCATGGGCGGNGCGAAGGATGAGCAGTATTGTCCTCTAACTTCGAATCACTGACGTGTAGGTCCAGTAGATGTGGGGCCTACATGTCAGTCAGTCNCAGTCAATAATGACCGTACTACAGAGGATAAAGTGCTTGTGCGTTATTGGGTGGGTGGTACATGTTTTGCTTGCTTGGTGTGTGTCAGTGTGTGTGTGTGTGTGCAGCTTAGCTAGCACCGGGCTGGCGGCTGCGTGCGTCGCCTTCAACTTCACAGTTCACGTGGGCTCCCCCTTGACAGAGGCCCAGACTTACGACAAATATATGCAGATCACAAATATTACTACATGGTTTTGGACTTCAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13465#0 TCCGTCCGGCCACCTCCCCTTCCTCCTCCATCATCTCACCGGGTGCGCTTCCCCTCCCCT 60
consensus_13465#1 ------------------------------------------------------------
consensus_13465#0 TCGTACAACGAAGATTTGCTATTCGCCAGGGCCCAACCACAGTTATAGCTCACGTAGCCG 120
consensus_13465#1 ------------------------------------------------------------
consensus_13465#0 CTACAGGCTTCTTCGCCGCCTCGTCTCCTCCTCGATCTCCCTTCCTCCCTAGAAAATCTC 180
consensus_13465#1 ------------------------------------------------------------
consensus_13465#0 TCGGATCTCGCCGAGAGCTAGCGGCTGGCTGGCGGCGGTGGCGCGGTGGCAGCAAAGTGT 240
consensus_13465#1 ------------------------------------------------------------
consensus_13465#0 ACGCTTTGCAGTTGCTGCCGGCGCGGCGCGGCAGGGTTGACGACGAAGAGGGAGGAGGAG 300
consensus_13465#1 ------------------------------------------------------------
consensus_13465#0 AGAGGCTGTGTCGGGTTTGTGTTGTGTTTGTGTGTGTAGTGTGAGATCTGGAGACGGCCG 360
consensus_13465#1 ------------------------------------------------------------
consensus_13465#0 GGAGGATGGCGCGCGGCGGGAGCTTCTCGCGGCTGCGGCTGCGCGCGGGGGTCGTTGTCG 420
consensus_13465#1 ------------------------------------------------------------
consensus_13465#0 CCGCCGCCGCCGCCGCCCTGCTCCTCTTCGCCGTCGTCGCGCCGCCCGCCGCGGCGTTCA 480
consensus_13465#1 ------------------------------------------------------------
consensus_13465#0 ACATCGGCCTCCAGTCCGCCGGCGACGGGCGAGCAAGGCCGGGTTGTGCAGCCGCACGTG 540
consensus_13465#1 ------------------------------------------------------------
consensus_13465#0 CGAGTCCGACCACTGCACGACGCCGCCGTTGCTGCGCTACGGCAAGTACTGCGGCATCCT 600
consensus_13465#1 ------------------------------------------------------------
consensus_13465#0 GTACAGCGGCTGCCCCGGCGAGCAGCCGTGCGACGAGCTCGACGCCTGCTGCATGCACCA 660
consensus_13465#1 ------------------------------------------------------------
consensus_13465#0 CGACAACTGCGTCCAGGCCAAGAATGACTACCTGAGCACGGCGTGCAACGAGGAGTTGCT 720
consensus_13465#1 ------------------------------------------------------------
consensus_13465#0 GGAGTGCCTGGCGAGGCTGCGGGAGGGCTCGTCGACGTTCCAGGGGAACAAGTGCATGAT 780
consensus_13465#1 ------------------------------------------------------------
consensus_13465#0 CGACGAGGTCATCGACGTGATCTCGCTCGTCATCGAGGCCGCCGTCGTCGCCGGCAGGCT 840
consensus_13465#1 ------------------------------------------------------------
consensus_13465#0 GCTGCACAAGCCTTAGCTTACATAGCCTCAGCCGTGCTGCAGG-CACCACCCCTGCCGGC 899
consensus_13465#1 ---------------------ATAGCCTCAGCCGTGCTGCANGGCACCACCCCTGCCGGC 39
******************** * ****************
consensus_13465#0 GGCGAACGGCGGCCGGATCGACGGCATGGGCGGCGCGAAGGATGAGCAGTATTGTCCTCT 959
consensus_13465#1 GGCGAACGGCGGCCGGATCGACGGCATGGGCGGNGCGAAGGATGAGCAGTATTGTCCTCT 99
********************************* **************************
consensus_13465#0 AACTTCGAATCACTGACGTGTAGGTCCAGTAGATGTGGGGCCTACATGTCAGTCAGTCAC 1019
consensus_13465#1 AACTTCGAATCACTGACGTGTAGGTCCAGTAGATGTGGGGCCTACATGTCAGTCAGTCNC 159
********************************************************** *
consensus_13465#0 AGTCAATAATGACCGTACTACAGAGGATAAAGTGCTTGTGCGTTATTGGGTGGGTGGTAC 1079
consensus_13465#1 AGTCAATAATGACCGTACTACAGAGGATAAAGTGCTTGTGCGTTATTGGGTGGGTGGTAC 219
************************************************************
consensus_13465#0 ATGTTTTGCTTGCTTGGTGTGTGTCAGTGTGTGTGTGTGTGTGCAGCTTAGCTAGCACCG 1139
consensus_13465#1 ATGTTTTGCTTGCTTGGTGTGTGTCAGTGTGTGTGTGTGTGTGCAGCTTAGCTAGCACCG 279
************************************************************
consensus_13465#0 GGCTGGCGGCTGCGTGCGTCGCCTTCAACTTCACAGTTCACGTGGGCTCCCCCTTGACAG 1199
consensus_13465#1 GGCTGGCGGCTGCGTGCGTCGCCTTCAACTTCACAGTTCACGTGGGCTCCCCCTTGACAG 339
************************************************************
consensus_13465#0 AGGCCCAGACTTACGACAAATATATGCAGATCACAAATATTACTACAAAAAATTGGAAAA 1259
consensus_13465#1 AGGCCCAGACTTACGACAAATATATGCAGATCACAAATATTACTACATGGTTTTGGACTT 399
*********************************************** *****
consensus_13465#0 AAAAA- 1264
consensus_13465#1 CAAAAA 405
****
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||