cluster # 13474

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Oryza sativa
cluster # 13474 cluster # 13474 Sequences # 13 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_13474#0 length = 1024 sequences # 6

consensus_13474#1 length = 636 sequences # 4
consensus_13474#2 length = 585 sequences # 3

consensusID : consensus_13474#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1024
fasta sequence

                              [TTCTCCTTCCATTTTTCTTGTGCACTTCTC-TTTCCCTTGCAAGCTCAAG-AAACCCAATTAATTAAGATAGTT-GTGATCATCTCCAAGCTTAGCTAATTAAGCTACTAGTGGCCAT-GGCGGTGGAGGCGGTTCTT-GAGGCGTCGAGAAGTAGTAGTGAGGAGGAGGCGGAGGTGATCGTCACGCACGGCGGCGGCGGCGGCGGCGGAGGAGGAGGAGGACAGGTGGAGGGGTGGGGGAAGCGGAAGCGG-TCGCGGCGGCGGCGACCGCAGCTGCCGCCCTCCGAGGAGGAGTACCTCGCGCTCTGCCTCCTCATGCTGGCGCGCGGGCGACGCGACGGCGACGACGTGGCGGCGTCGGCGTCTGCGGCGGCGGCGGCGGTGGAGCACCGGTGCTCCGTCTGCGGCAAGGCGTTCGCGTCCTACCAGGCTCTCGGCGGCCACAAGGCCAGCCACCGGAAGCCGCCGCCGCCGCCGCCGCCCGCCATGGTCGACGACGACGAGGTGGTGGTGGAGACGAAACCGGCGGCTATCGCGACGCCGTCCTCGTCGGCGTCGGGCGTCTCCGGCGGCGGCGGCGGGAGGGCGCACGAGTGCAACGTGTGCGGCAAGGCGTTCCCGACGGGGCAGGCGCTGGGCGGCCACAAGCGATGCCACTACGACGGCACGATCGGCAGCGCCGCCGGCGCC-GGCGCGTCCAAGCCGGCGGCGAAGACGACCGTGGCGGTGGCGGCGAGCCGGGGCTTCGACCTCAACCTGCCGGCGCTGCCGGACGTCGCCGCCGCCGCCGACCAGCGGTGCGCGGCGGAGGACG-ACGAGGTGCTCAGCCCTCTCGCCTTCAAGAAGCCCAGGCTCATGATCCCGGCATAGCTAGCCAAGCCCACAAGATTTGTTTAATTTTAGCCATAAAATTCCATTAAATTAAACCCATAGTTTTTTCTGTTAATTACTTTCTTAATTTGGTGATTAGTCTTAGGAATGATGATTAGTTTGTGTATATAGCCATTGTTTGTTCATCAAAAAAAAAA]

[+] EMBL CB648275             [TTCTCCTCCCATTTTTCTTGTGCACTTCTC TTTCCCTTGCAAGCTCAAG AAACCCAATTAATTAAGATAGTT GTGATCATCTCCAAGCTTAGCTAATTAAGCTACTAGTGGCCAT GGCGGTGGAGGCGGTTCTT GAGGCGTCGAGAAGTAGTAGTGAGGAGGAGGCGGAGGTGATCGTCACGCACGGCGGCGGCGGCGGCGGCGGAGGAGGAGGAGGACAGGTGGAGGGGTGGGGGAAGCGGAAGCGG TCGCGGCGGAGGGGACCGCAGCTGCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CB662384             [    CCTTCCATTTTTCTTGTGCACTTCTC TTTCCCTTGCAAGCTCAAG AAACCCAATTAATTAAGATAGTT GTGATCATCTCCAAGCTTAGCTAATTAAGCTACTAGTGGCCAT GGCGGTGGAGGCGGTTCTT GAGGCGTCGAGAAGTAGTAGTGAGGAGGAGGCGGAGGTGATCGTCACGCACGGCGGCGGCGGCGGCGGCGGAGGAGGAGGAGGACAGGTGGAGGGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CB662383             [      TTCCATTTTTCTAGTGCACTTCTCTTTTCCCTCGCAAGCTCAAGAAAACCCAATTAATTAAGATAGTTCGTGATCATCTCCAAGCTTAGCTAATTAAGCTACTAGTGGCCATCGGCGGTGGAGGCGGTTCTTCGAGGCGTCGAGAAGTAGTAGTGAGGTGGTGGCGGAGGTGATCGTCACGCACGGCGGCGGCGGCGGCGGCGGAGGTGGAGGAGGA A GTGGAGGAGTGGGGGAAGCGTAAGCGG TCGCGGCGGCTGCGACCGCATCTGCCGGCCTCCGAGGAGGAGTACCTCGCGCTCTGCCTCCTCATGCTGGCGCGCGGGCGACGCGACGGCGACGACGTGGCGGCGTCGGCGTCTGCGGCGGCGGCGGCGGTGGAGCACCGGTGCTCCGTCTGCGGCAAGGCGTTCGCGTCCTACCAGGCTCTCGGCGGCCACAAGGCCAGCCACCGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AU068222             [        CCATTTTTCTTGTGCACTTCTC TTTCCCTTGCAAGCTCAAG AAACCCAATTAATTAAGATAGTT GTNATCATCTCCAAGCTTAGCTAATTAAGCTACTAGTGGCCAT GGCGGTGGAGGCGGTTCTT GAGGCGTCGAGAAGTAGTAGTGAGGAGGAGGCGGAGGTGATCGTNACGCACGGCGGCGGCGGCGGCGGCGGAGGAGGAGGAGGACAGGTGGAGGGGTGGGGGAAGCGGAA CGGTTCGCGGCGGCGGCGACC NAGCTGCCGCCCTCCGAagg                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL AY219847             [          ATTTTTCTTGTGCACTTCTC TTTCCCTTGCAAGCTCAAG AAACCCAATTAATTAAGATAGTT GTGATCATCTCCAAGCTTAGCTAATTAAGCTACTAGTGGCCAT GGCGGTGGAGGCGGTTCTT GAGGCGTCGAGAAGTAGTAGTGAGGAGGAGGCGGAGGTGATCGTCACGCACGGCGGCGGCGGCGGCGGCGGAGGAGGAGGAGGACAGGTGGAGGGGTGGGGGAAGCGGAAGCGG TCGCGGCGGCGGCGACCGCAGCTGCCGCCCTCCGAGGAGGAGTACCTCGCGCTCTGCCTCCTCATGCTGGCGCGCGGGCGACGCGACGGCGACGACGTGGCGGCGTCGGCGTCGGCGGCGGCGGCGGCGGTGGAGCACCGGTGCTCCGTCTGCGGCAAGGCGTTCGCGTCCTACCAGGCTCTCGGCGGCCACAAGGCCAGCCACCGGAAGCCGCCGCCGCCGCCGCCGCCCGCCATGGTCGACGACGACGAGGTGGTGGTGGAGACGAAACCGGCGGCTATCGCGACGCCGTCCTCGTCGGCGTCGGGCGTCTCCGGCGGCGGCGGCGGGAGGGCGCACGAGTGCAACGTGTGCGGCAAGGCGTTCCCGACGGGGCAGGCGCTGGGCGGCCACAAGCGATGCCACTACGACGGCACGATCGGCAGCGCCGCCGGCGCC GGCGCGTCCAAGCCGGCGGCGAAGACGACCGTGGCGGTGGCGGCGAGCCGGGGCTTCGACCTCAACCTGCCGGCGCTGCCGGACGTCGCCGCCGCCGCCGACCAGCGGTGCGCGGCGGAGGACG ACGAGGTGCTCAGCCCTCTCGCCTTCAAGAAGCCCAGGCTCATGATCCCGGCATAGCTAGCCAAGCCCACAAGATTTGTTTAATTTTAGCCATAAAATTCCATTAAATTAAACCCATAGTTTTTTCTGTTAATTACTTTCTTAATTTGGTGATTAGTCTTAGGAATGATGATTAGTTTGTGTATATAGCCATTGTTTGTTCATCAAAAAAAAAA]
[+] EMBL BM419733             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GGGAGGGCGCACGAGTGCAACGTGTGCGGCAAGGCGTTCCCGACGGGGCAGGCGCTGGGCGGCCACAAGCGATGCCACTACGACGGCACGATCGGCAGCGCCGCCGGCGCCAGGCGCGTCCAAGCCGGCGGCGAAGACGACCGTGGCGGTGGCGGCGAGCCGGGGCTTCGACCTCAACCTGCCGGCGCTGCCGGACGTCGCCGCCGCCGCCGACCAGCGGTGCGCGGCGGAGGACGTACGAGGTGCTCAGCCCTCTCGCCTTCAAGAAGCCCAGGCTCATGATCCCGGCATAGCTAGCCAAGCCCACAAGATTTGTTTAATTTTAGCCATAAAATTCCATTAAATTAAACCCATAGTTTTTTCTGTTAATTACTTTCTTAATTTGGTGATTAGTCTTAGGAATGATGATTAGTTTGTGTATATAGCCATTGTTTGTTCATCAAAAAAAAAA]




>consensus_13474#0
TTCTCCTTCCATTTTTCTTGTGCACTTCTCTTTCCCTTGCAAGCTCAAGAAACCCAATTA
ATTAAGATAGTTGTGATCATCTCCAAGCTTAGCTAATTAAGCTACTAGTGGCCATGGCGG
TGGAGGCGGTTCTTGAGGCGTCGAGAAGTAGTAGTGAGGAGGAGGCGGAGGTGATCGTCA
CGCACGGCGGCGGCGGCGGCGGCGGAGGAGGAGGAGGACAGGTGGAGGGGTGGGGGAAGC
GGAAGCGGTCGCGGCGGCGGCGACCGCAGCTGCCGCCCTCCGAGGAGGAGTACCTCGCGC
TCTGCCTCCTCATGCTGGCGCGCGGGCGACGCGACGGCGACGACGTGGCGGCGTCGGCGT
CTGCGGCGGCGGCGGCGGTGGAGCACCGGTGCTCCGTCTGCGGCAAGGCGTTCGCGTCCT
ACCAGGCTCTCGGCGGCCACAAGGCCAGCCACCGGAAGCCGCCGCCGCCGCCGCCGCCCG
CCATGGTCGACGACGACGAGGTGGTGGTGGAGACGAAACCGGCGGCTATCGCGACGCCGT
CCTCGTCGGCGTCGGGCGTCTCCGGCGGCGGCGGCGGGAGGGCGCACGAGTGCAACGTGT
GCGGCAAGGCGTTCCCGACGGGGCAGGCGCTGGGCGGCCACAAGCGATGCCACTACGACG
GCACGATCGGCAGCGCCGCCGGCGCCGGCGCGTCCAAGCCGGCGGCGAAGACGACCGTGG
CGGTGGCGGCGAGCCGGGGCTTCGACCTCAACCTGCCGGCGCTGCCGGACGTCGCCGCCG
CCGCCGACCAGCGGTGCGCGGCGGAGGACGACGAGGTGCTCAGCCCTCTCGCCTTCAAGA
AGCCCAGGCTCATGATCCCGGCATAGCTAGCCAAGCCCACAAGATTTGTTTAATTTTAGC
CATAAAATTCCATTAAATTAAACCCATAGTTTTTTCTGTTAATTACTTTCTTAATTTGGT
GATTAGTCTTAGGAATGATGATTAGTTTGTGTATATAGCCATTGTTTGTTCATCAAAAAA
AAAA

consensusID : consensus_13474#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 636
fasta sequence

                              [CGGGTCGACCCACGCGTCCCGCAAGGCGTTCCCGACGGGCAGGCCTGGGCGGCCACAAGCGATGCCACTACGACGGCACGATCGGCAGC-CCGCCGGCGCCGGCGCGTCCAAGCCGGCGGCGAAGACGACCGTGGCGGT-GCGGCGAGCCGGGGCTTCGAC-CTCAACCTGCCGGCGCTGCCGGACGTCGCCGCCGCCGCCGACCAGCGGTGCGCGGCGGAGGACGACGAGGTGCTCAGCCCTCTCGCCTTCAAGAAGCCCAGGCTCATGATCCCGGCATAGCTAGCCAAGCCCACAAGATTTGTTTAATTTTAGCCATAAAATTCCATTAAATTAAACCCATAGTTTTTTCTGTTAATTACTTTCTTAATTT-GGTGATTAGTCTTAGGAATGATGATTA-CCTTTGTGTATATAGCCATTGTTTGTTCATCTATCATTTGTATCTTGTAATTAATCCCCTGTTAGCTAGATTTGGTTTAATTGGATATAGGAGTTACAGATCAATTCTTTCATTGG-TTGAATTGGTTTAATTTATGTATATATATA-CATATGTAAAATACATGTATAAGAAAAATACGCATATGTATTTAAAAAAAAAATTAATTAATTCTTGGTTGCTCAGCTATAGCTAAATAAAAA]

[+] EMBL BI802944             [CGGGTCGACCCACGCGTCCCGCAAGGCGTTCCCGACGGGCAGGCCTGGGCGGCCACAAGCGATGCCACTACGACGGCACGATCGGCAGCGCCGCCGGCGCCGGCGCGTCCAAGCCGGCGGCGAAGACGACCGTGGCGGTGGCGGCGAGCCGGGGCTTCGAC CTCAACCTGCCGGCGCTGCCGGACGTCGCCGCCGCCGCCGACCAGCGGTGCGCGGCGGAGGACGACGAGGTGCTCAGCCCTCTCGCCTTCAAGAAGCCCAGGCTCATGATCCCGGCATAGCTAGCCAAGCCCACAAGATTTGTTTAATTTTAGCCATAAAATTCCATTAAATTAAACCCATAGTTTTTTCTGTTAATTACTTTCTTAATTTCGGTGATTAGTCTTAGGAATGATGATTACCCCTTGTGTATATAGCCATTGTTTGTTCATCTATCATTTGTATCTTGTAATTAATCCCCTGTTAGCTAGATTTGGTTTAATTGGATATAGGAGTTACAGATCAATTCTTTCATTGG TTGAATTGGTTTAATTTATGTATATATATC CATATGTAAAATACATGTATAAGAAAAA                                                                 ]
[+] EMBL BI803063             [                 CCCGCAA GCGTTCCCGACGGGCAGCGCT GGC GCCACAAGCGATGCCACTACGACGGCACGATCGGCAGC CCGCCGGCGCCGGCGCGTCCAAGCCGGCGGCGAAGACGACCGTGGCGGT GCGGCGAGCCGGGGCTTCGAC CTCAACCTGCCGGCGCTGCCGGACGTCGCCGCCGCCGCCGACCAGCGGTGCGCGGCGGAGGACGACGAGGTGCTCAGCCCTCTCGCCTTCAAGAAGCCCAGGCTCATGATCCCGGCATAGCTAGCCAAGCCCACAAGATTTGTTTAATTTTAGCCATAAAATTCCATTAAATTAAACCCATAGTTTTTTCTGTTAATTACTTTCTTAATTT GGTGATTAGTCTTAGGAATGATGATTA CCTTTGTGTATATAGCCATTGTTTGTTCATCTATCATTTGTATCTTGTAATTAATCCCCTGTTAGCTAGATTTGGTTTAATTGGATATAGGAGTTACAGATCAATTCTTTCATTGGCTTGAATTGGTTTAATTTATGTATATACATA CATATGTAAAATACATGTATAAAAAAAA                                                                 ]
[+] EMBL BI813515             [                                                                           GCACGATC GCAGC CC CCGGCACCGGCGCGTCCAA CC GCGGCGAAGACGACCGT GC GT GCGGCGA CCGGGGCTTCGACACTCAACCTGCCGGCGCTGCCGGACGTCGCCGCCGCCGCCGACCAGCGGTGCGCGGCGGAGGACGACGAGGTGCTCAGCCCTCTCGCCTTCAAGAAGCCCAGGCTCATGATCCCGGCATAGCTAGCCAAGCCCACAAGATTTGTTTAATTTTAGCCATAAAATTCCATTAAATTAAACCCATAGTTTTTTCTGTTAATTACTTTCTTAATTT GGTGATTAGTCTTAGGAATGATGATTA  GTTTGTGTATATAGCCCTTGTTTGTTCATCTATCATTTGTATCTTGTAATTAATCCCCTGTTAGCTAGATTTGGTTTAATTGGATATAGGAGTTACAGATCAATTCTTTCATTGG TTGAATTGGTTTAATTTATGTATATATATACCATATGTAAAATACATGTATAAGAAAAATACGCATATGTATTTAAAAAAAAAA                                        ]
[+] EMBL BI811890             [                                                                                                                                                                                                                                                                                                                                                                                          ATTAGTCTTAGGAATGATGATTA  GTTTGTGTATATAGCCATTGTTTGTTCATCTATCATTTGTATCTTGTAATTAATCCCCTGTTAGCTAGATTTGGTTTAATTGGATATAGGAGTTACAGATC ATTCTTTCATTGG TTGAATTGGTTTAATTTATGTATATATATA CATATGTAAAATACATGTATAAGAAAAATACGCATATGTATTTAATTTTTTTGTTAATTAATTCTTGGTTGCTCAGCTATAGCTAAATAAAAA]




>consensus_13474#1
CGGGTCGACCCACGCGTCCCGCAAGGCGTTCCCGACGGGCAGGCCTGGGCGGCCACAAGC
GATGCCACTACGACGGCACGATCGGCAGCCCGCCGGCGCCGGCGCGTCCAAGCCGGCGGC
GAAGACGACCGTGGCGGTGCGGCGAGCCGGGGCTTCGACCTCAACCTGCCGGCGCTGCCG
GACGTCGCCGCCGCCGCCGACCAGCGGTGCGCGGCGGAGGACGACGAGGTGCTCAGCCCT
CTCGCCTTCAAGAAGCCCAGGCTCATGATCCCGGCATAGCTAGCCAAGCCCACAAGATTT
GTTTAATTTTAGCCATAAAATTCCATTAAATTAAACCCATAGTTTTTTCTGTTAATTACT
TTCTTAATTTGGTGATTAGTCTTAGGAATGATGATTACCTTTGTGTATATAGCCATTGTT
TGTTCATCTATCATTTGTATCTTGTAATTAATCCCCTGTTAGCTAGATTTGGTTTAATTG
GATATAGGAGTTACAGATCAATTCTTTCATTGGTTGAATTGGTTTAATTTATGTATATAT
ATACATATGTAAAATACATGTATAAGAAAAATACGCATATGTATTTAAAAAAAAAATTAA
TTAATTCTTGGTTGCTCAGCTATAGCTAAATAAAAA

consensusID : consensus_13474#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 585
fasta sequence

                              [ATGCGTTCCCGACGGGGCAGGGCGCTGGCGCCACAAGTCGATGCCCTACGCGGCACGATCGCAGCGCCGCCGGCGCCGGCGCGTCCAGCCGGCGGCGAAGACGACCGTGCGGTGGCGTGCGAGCCGGGGCTTCGACCTCACCTGCCGGCGCTCCGGACGTCGCCGCCGCCGCCGACCAGCGGTGCGCGGCGGAGG-ACGACGAGGTGCTCAGCCC-TCTCGCCTTCAAGAAGCCCAGGCTCATGATCCCGGCATAGC-TAGCCAAGCCCACAAGATTTGTTTAA-TTT-TAGCCATAAAATTCCATTAAATTAAACCCATAGTTTTTTC-TGTTAATTACTTTCTTAATTTGGTGATTAGTCTTAGGAATGATGATTAGTTTGTGTATATAGCCATTGTTTGTTCATCTATCATTTGTATCTTGTAA-TTAATCCCCTGTTAGCTAGATTTGGTTTAATTGGATATAGGAGTTACAGATCAATTCTTTCATTGGTTGAATTGGTTTAATTTATGTATATATATACAATATGTAAAATACATGTATAAGAA-AAATACGCA-TATGTATTTAATTTTTTTGTTAA--AAAAAAGGGA]

[+] EMBL BM421116             [ATGCGTTCCCGACGGGGCAGGGCGCTGGCGCCACAAGTCGATGCCCTACGCGGCACGATCGCAGCGCCGCCGGCGCCGGCGCGTCCAGCCGGCGGCGAAGACGACCGTGCGGTGGCGTGCGAGCCGGGGCTTCGACCTCACCTGCCGGCGCTCCGGACGTCGCCGCCGCCGCCGACCAGCGGTGCGCGGCGGAGG ACGACGAGGTGCTCAGCCC TCTCGCCTTCAAGAAGCCCAGGCTCATGATCCCGGCATAGC TAGCCAAGCCCACAAGATTTGTTTAA TTT TAGCCATAAAATTCCATTAAATTAAACCCATAGTTTTTTC TGTTAATTACTTTCTTAATTTGGTGATTAGTCTTAGGAATGATGATTAGTTTGTGTATATAGCCATTGTTTGTTCATCTATCATTTGTATCTTGTAAGTTAATCCCCTGTTAGCTAGATTTGGTTTAATTGGATATAGGAGTTACAGATCAATTCTTTCATTGGTTGAATTGGTTTAATTTATGTATATATATAC ATATGTAAAATACATGTATAAGAA AAATACGCA TATGTATTTAATTTTTTTGTTAA  AAAAA     ]
[+] EMBL BM420704             [                                                                                                                                                                     ctGCCGCCGACCAGCGGTGCGCGGCGGAGGTACGACGAGGTGCTCAGCCCGTNTCGCCTTCAAGAAGCCCAGGCTCATGATCCCGGCATAGCGTAGCCAAGCCCACAAGATTTGTTTAAGTTTGTAGCCATAAAATTCCATTAAATTAAACCCATAGTTTTTTCGTGTTAATTACTTTCTTAATTTGGTGATTAGTCTTAGGAATGATGATTAGTTTGTGTATATAGCCATTGTTTGTTCATCTATCATTTGNATCTTGTAA TTAATCCCCTGTTAGCTAGATTTGGTTTAATTGGATATAGGAGTTACAGATCAATTCTTTCATTGGTTGAATTGGTTTAATTTATGTATATATATACAATATGTAAAATACATGTATAAGAA AAATACGCA TATGTATTTAATTTTTTTGTTAA  AAAA      ]
[-] EMBL CB648276             [                                                                                                                                                                                   CGGTGCGCGGCGGAGG ACGACGAGGTGCTCAGCCC TCTCGCCTTCAAGAAGCCCAGGCTCATGATCCCGGCATAGC TAGCCAAGCCCACAAGATTTGTTTAA TTT TAGCCATAAAATTCCATTAAATTAAACCCATAGTTTTTTC TGTTAATTACTTTCTTAATTTGGTGATTAGTCTTAGGAATGATGATTAGTTTGTGTATATAGCCATTGTTTGTTCATCTATCATTTGTATCTTGTAA TTAATCCCCTGTTAGCTAGATTTGGTTTAATTGGATATAGGAGTTACAGATCAATTCTTTCATTGGTTGAATTGGTTTAATTTATGTATATATATACAATATGTAAAATACATGTATAAAAAGGAATACGCAGTATGTATTTAATTTTTTTGTTAATTAAAAAAGGGA]




>consensus_13474#2
ATGCGTTCCCGACGGGGCAGGGCGCTGGCGCCACAAGTCGATGCCCTACGCGGCACGATC
GCAGCGCCGCCGGCGCCGGCGCGTCCAGCCGGCGGCGAAGACGACCGTGCGGTGGCGTGC
GAGCCGGGGCTTCGACCTCACCTGCCGGCGCTCCGGACGTCGCCGCCGCCGCCGACCAGC
GGTGCGCGGCGGAGGACGACGAGGTGCTCAGCCCTCTCGCCTTCAAGAAGCCCAGGCTCA
TGATCCCGGCATAGCTAGCCAAGCCCACAAGATTTGTTTAATTTTAGCCATAAAATTCCA
TTAAATTAAACCCATAGTTTTTTCTGTTAATTACTTTCTTAATTTGGTGATTAGTCTTAG
GAATGATGATTAGTTTGTGTATATAGCCATTGTTTGTTCATCTATCATTTGTATCTTGTA
ATTAATCCCCTGTTAGCTAGATTTGGTTTAATTGGATATAGGAGTTACAGATCAATTCTT
TCATTGGTTGAATTGGTTTAATTTATGTATATATATACAATATGTAAAATACATGTATAA
GAAAAATACGCATATGTATTTAATTTTTTTGTTAAAAAAAAGGGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13474#1      ------------------------------------------------------------
consensus_13474#2      ------------------------------------------------------------
consensus_13474#0      TTCTCCTTCCATTTTTCTTGTGCACTTCTCTTTCCCTTGCAAGCTCAAGAAACCCAATTA 60
                                                                                   

consensus_13474#1      ------------------------------------------------------------
consensus_13474#2      ------------------------------------------------------------
consensus_13474#0      ATTAAGATAGTTGTGATCATCTCCAAGCTTAGCTAATTAAGCTACTAGTGGCCATGGCGG 120
                                                                                   

consensus_13474#1      ------------------------------------------------------------
consensus_13474#2      ------------------------------------------------------------
consensus_13474#0      TGGAGGCGGTTCTTGAGGCGTCGAGAAGTAGTAGTGAGGAGGAGGCGGAGGTGATCGTCA 180
                                                                                   

consensus_13474#1      ------------------------------------------------------------
consensus_13474#2      ------------------------------------------------------------
consensus_13474#0      CGCACGGCGGCGGCGGCGGCGGCGGAGGAGGAGGAGGACAGGTGGAGGGGTGGGGGAAGC 240
                                                                                   

consensus_13474#1      ------------------------------------------------------------
consensus_13474#2      ------------------------------------------------------------
consensus_13474#0      GGAAGCGGTCGCGGCGGCGGCGACCGCAGCTGCCGCCCTCCGAGGAGGAGTACCTCGCGC 300
                                                                                   

consensus_13474#1      ------------------------------------------------------------
consensus_13474#2      ------------------------------------------------------------
consensus_13474#0      TCTGCCTCCTCATGCTGGCGCGCGGGCGACGCGACGGCGACGACGTGGCGGCGTCGGCGT 360
                                                                                   

consensus_13474#1      ------------------------------------------------------------
consensus_13474#2      ------------------------------------------------------------
consensus_13474#0      CTGCGGCGGCGGCGGCGGTGGAGCACCGGTGCTCCGTCTGCGGCAAGGCGTTCGCGTCCT 420
                                                                                   

consensus_13474#1      ------------------------------------------------------------
consensus_13474#2      ------------------------------------------------------------
consensus_13474#0      ACCAGGCTCTCGGCGGCCACAAGGCCAGCCACCGGAAGCCGCCGCCGCCGCCGCCGCCCG 480
                                                                                   

consensus_13474#1      ------------------------------------------------------------
consensus_13474#2      ------------------------------------------------------------
consensus_13474#0      CCATGGTCGACGACGACGAGGTGGTGGTGGAGACGAAACCGGCGGCTATCGCGACGCCGT 540
                                                                                   

consensus_13474#1      -------------------------------------------CGGGTCGACCCACGCGT 17
consensus_13474#2      ------------------------------------------------------------
consensus_13474#0      CCTCGTCGGCGTCGGGCGTCTCCGGCGGCGGCGGCGGGAGGGCGCACGAGTGCAACGTGT 600
                                                                                   

consensus_13474#1      CCCGCAAGGCGTTCCCGACGGG-CAGGC-CTGGGCGGCCACAAG-CGATGCCACTACGAC 74
consensus_13474#2      ------ATGCGTTCCCGACGGGGCAGGG-CGCTGGCGCCACAAGTCGATGCC-CTACG-C 51
consensus_13474#0      GCGGCAAGGCGTTCCCGACGGGGCAGGCGCTGGGCGGCCACAAG-CGATGCCACTACGAC 659
                             * ************** ****  *   *  ******** ******* ***** *

consensus_13474#1      GGCACGATCGGCAGC-CCGCCGGCGCCGGCGCGTCCAAGCCGGCGGCGAAGACGACCGTG 133
consensus_13474#2      GGCACGATCGCAGCG-CCGCCGGCGCCGGCGCGTCCA-GCCGGCGGCGAAGACGACCGTG 109
consensus_13474#0      GGCACGATCGGCAGCGCCGCCGGCGCCGGCGCGTCCAAGCCGGCGGCGAAGACGACCGTG 719
                       **********      ********************* **********************

consensus_13474#1      GCGGTGCG-GCGAGCCGGGGCTTCGACCTCAACCTGCCGGCGCTGCCGGACGTCGCCGCC 192
consensus_13474#2      CGGTGGCGTGCGAGCCGGGGCTTCGACCTCA-CCTGCCGGCGCT-CCGGACGTCGCCGCC 167
consensus_13474#0      GCGGTGGCGGCGAGCCGGGGCTTCGACCTCAACCTGCCGGCGCTGCCGGACGTCGCCGCC 779
                         *  *   ********************** ************ ***************

consensus_13474#1      GCCGCCGACCAGCGGTGCGCGGCGGAGGACGACGAGGTGCTCAGCCCTCTCGCCTTCAAG 252
consensus_13474#2      GCCGCCGACCAGCGGTGCGCGGCGGAGGACGACGAGGTGCTCAGCCCTCTCGCCTTCAAG 227
consensus_13474#0      GCCGCCGACCAGCGGTGCGCGGCGGAGGACGACGAGGTGCTCAGCCCTCTCGCCTTCAAG 839
                       ************************************************************

consensus_13474#1      AAGCCCAGGCTCATGATCCCGGCATAGCTAGCCAAGCCCACAAGATTTGTTTAATTTTAG 312
consensus_13474#2      AAGCCCAGGCTCATGATCCCGGCATAGCTAGCCAAGCCCACAAGATTTGTTTAATTTTAG 287
consensus_13474#0      AAGCCCAGGCTCATGATCCCGGCATAGCTAGCCAAGCCCACAAGATTTGTTTAATTTTAG 899
                       ************************************************************

consensus_13474#1      CCATAAAATTCCATTAAATTAAACCCATAGTTTTTTCTGTTAATTACTTTCTTAATTTGG 372
consensus_13474#2      CCATAAAATTCCATTAAATTAAACCCATAGTTTTTTCTGTTAATTACTTTCTTAATTTGG 347
consensus_13474#0      CCATAAAATTCCATTAAATTAAACCCATAGTTTTTTCTGTTAATTACTTTCTTAATTTGG 959
                       ************************************************************

consensus_13474#1      TGATTAGTCTTAGGAATGATGATTACCTTTGTGTATATAGCCATTGTTTGTTCATCTATC 432
consensus_13474#2      TGATTAGTCTTAGGAATGATGATTAG-TTTGTGTATATAGCCATTGTTTGTTCATCTATC 406
consensus_13474#0      TGATTAGTCTTAGGAATGATGATTAG-TTTGTGTATATAGCCATTGTTTGTTCATCAAAA 1018
                       *************************  ***************************** *  

consensus_13474#1      ATTTGTATCTTGTAATTAATCCCCTGTTAGCTAGATTTGGTTTAATTGGATATAGGAGTT 492
consensus_13474#2      ATTTGTATCTTGTAATTAATCCCCTGTTAGCTAGATTTGGTTTAATTGGATATAGGAGTT 466
consensus_13474#0      AAAAAA------------------------------------------------------ 1024
                       *                                                           

consensus_13474#1      ACAGATCAATTCTTTCATTGGTTGAATTGGTTTAATTTATGTATATATATACA-TATGTA 551
consensus_13474#2      ACAGATCAATTCTTTCATTGGTTGAATTGGTTTAATTTATGTATATATATACAATATGTA 526
consensus_13474#0      ------------------------------------------------------------
                                                                                   

consensus_13474#1      AAATACATGTATAAGAAAAATACGCATATGTATTTAAAAAAAAAATTAATTAATTCTTGG 611
consensus_13474#2      AAATACATGTATAAGAAAAATACGCATATGTATTTAATTTTTTTGTTAAAAAAAAGGGA- 585
consensus_13474#0      ------------------------------------------------------------
                                                                                   

consensus_13474#1      TTGCTCAGCTATAGCTAAATAAAAA 636
consensus_13474#2      -------------------------
consensus_13474#0      -------------------------