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Oryza sativa
cluster # 13488 cluster # 13488       Sequences # 13       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13488#0 length = 1062 sequences # 10  
consensus_13488#1 length = 437 sequences # 1  
consensus_13488#2 length = 424 sequences # 2  

consensusID : consensus_13488#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 1062
fasta sequence
                              [TGAGCCCGCATCGTCTCGTCTCCCTCTCCCTCTCCCACCCCGCCTCCCTCCTCGACGAGCTCCGAGCGGCGGCGATGGCGAGCGACGGCGCGG-CGGCCACGCCGGCGAAGGCGAGCCCGAAGAAGGCCAACCTCCTCGACCCCCACTCCATCAAGCACCTCCTCGACGAGACCATCTCCGACGTCGTGAAGAGCAAGGGCTACGCGGAGGACACGCGGCTGGGCAACTGGAAGCTGGCGATTGGGGCGGCCGTGATCGCCATCGCTCTCCTCGCGCAGTTCTACCCGAAGAAGTTCCCCCAGAACCGCGAGTTCCTCCTCGGCTGCATCGCATTATATGTGGTGTTGAATGT-GGTGCTGTTGATAC-TTAGCTATACCAAGGAAAAGGATGCCA-TTATGTTCACACACCCTCCTGCGGGTTCTTTCAATAGCACTGGACTAGTTATA-TCTTC-AAAATTACCAA-GATTCTCGGATATGTACACTATCACAATAGCCAGT-GCAGAT-CCCCAGTCTATTTCCGCCAATAAGCCAGTTCATTTCACTAAGAGTGTTACAAAATGGTTTACTAAGGAAGGAGTTCTCGTGGAAGGCCTGTTCTGGAAGGATGTTGAGA-GGTTGATTGATGACTACAACACTGAGCGCAAGGGCAA-ATGAATGGGTAGTCCATGTGACTATGA-GA-CGTTAATTGTCTAGAAAA-GAAACCCTCTT-GTGGAATTCCTTGCTT-GGAAGAATCCTTAGCTTAATCAAAATAGACAATTTT-GTCATACATTACTGTTTCACTGGTGATTGAAATACTGTCGAAGACACCCGGTACCATCCCAATTCTTTTTTATGAGCTTACAAGCCTATCGATGGTTAATCATAGATACCAGCACTGAGCTCTGTACGTTCTGCTTATATGACAACATGAATGAAATTGCCTCAGGAAAACAGAAAAATGTATTATGCCAATAGCCAAAAATCCTTGTAAATAATTCCTTCTGTACACATATTTTGGACTGGTAAGGTACCAACAACTACCAGTGTCGTCGAAATACGTACTCTCCTCGTCCCAAAATATAAG]

[+] EMBL AK059953             [TGAGCCCGCATCGTCTCGTCTCCCTCTCCCTCTCCCACCCCGCCTCCCTCCTCGACGAGCTCCGAGCGGCGGCGATGGCGAGCGACGGCGCGG CGGCCACGCCGGCGAAGGCGAGCCCGAAGAAGGCCAACCTCCTCGACCCCCACTCCATCAAGCACCTCCTCGACGAGACCATCTCCGACGTCGTGAAGAGCAAGGGCTACGCGGAGGACACGCGGCTGGGCAACTGGAAGCTGGCGATTGGGGCGGCCGTGATCGCCATCGCTCTCCTCGCGCAGTTCTACCCGAAGAAGTTCCCCCAGAACCGCGAGTTCCTCCTCGGCTGCATCGCATTATATGTGGTGTTGAATGT GGTGCTGTTGATAC TTAGCTATACCAAGGAAAAGGATGCCA TTATGTTCACACACCCTCCTGCGGGTTCTTTCAATAGCACTGGACTAGTTATA TCTTC AAAATTACCAA GATTCTCGGATATGTACACTATCACAATAGCCAGT GCAGAT CCCCAGTCTATTTCCGCCAATAAGCCAGTTCATTTCACTAAGAGTGTTACAAAATGGTTTACTAAGGAAGGAGTTCTCGTGGAAGGCCTGTTCTGGAAGGATGTTGAGA GGTTGATTGATGACTACAACACTGAGCGCAAGGGCAA ATGAATGGGTAGTCCATGTGACTATGA GA CGTTAATTGTCTAGAAAA GAAACCCTCTT GTGGAATTCCTTGCTT GGAAGAATCCTTAGCTTAATCAAAATAGACAATTTT GTCATACATTACTGTTTCACTGGTGATTGAAATACTGTCGAAGACACCCGGTACCATCCCAATTCTTTTTTATGAGCTTACAAGCCTATCGATGGTTAATCATAGATACCAGCACTGAGCTCTGTACGTTCTGCTTATATGACAACATGAATGAAATTGCCTCAGGAAAACAGAAAAATGTATTATGCCAATAGCCAAAAATCCTTGTAAATAATTCCTTCTGTACACATATTTTGGACTGGTAAGGTACCAACAACTACCAGTGTCGTCGAAATACGTACTCTCCTCGTCCCAAAATATAAG]
[+] EMBL AK099024             [      CGCATCGTCTCGTCTCCCTCTCCCTCTCCCACCCCGCCTCCCTCCTCGACGAGCTCCGAGCGGCGGCGATGGCGAGCGACGGCGCGG CGGCCACGCCGGCGAAGGCGAGCCCGAAGAAGGCCAACCTCCTCGACCCCCACTCCATCAAGCACCTCCTCGACGAGACCATCTCCGACGTCGTGAAGAGCAAGGGCTACGCGGAGGACACGCGGCTGGGCAACTGGAAGCTGGCGATTGGGGCGGCCGTGATCGCCATCGCTCTCCTCGCGCAGTTCTACCCGAAGAAGTTCCCCCAGAACCGCGAGTTCCTCCTCGGCTGCATCGCATTATATGTGGTGTTGAATGT GGTGCTGTTGATAC TTAGCTATACCAAGGAAAAGGATGCCA TTATGTTCACACACCCTCCTGCGGGTTCTTTCAATAGCACTGGACTAGTTATA TCTTC AAAATTACCAA GATTCTCGGATATGTACACTATCACAATAGCCAGT GCAGAT CCCCAGTCTATTTCCGCCAATAAGCCAGTTCATTTCACTAAGAGTGTTACAAAATGGTTTACTAAGGAAGGAGTTCTCGTGGAAGGCCTGTTCTGGAAGGATGTTGAGA GGTTGATTGATGACTACAACACTGAGCGCAAGGGCAA ATGAATGGGTAGTCCATGTGACTATGA GA CGTTAATTGTCTAGAAAA GAAACCCTCTT GTGGAATTCCTTGCTT GGAAGAATCCTTAGCTTAATCAAAATAGACAATTTT GTCATACATTACTGTTTCACTGGTGATTGAAATACTGTCGAAGACACCCGGTACCATCCCAATTCTTTTTTATGAGCTTACAAGCCTATCGATGGTTAATCATAGATACCAGCACTGAGCTCTGTACGTTCTGCTTATATGACAACATGAATGAAA                                                                                                                                                   ]
[+] EMBL AK071742             [      CGCATCGTCTCGTCTCCCTCTCCCTCTCCCACCCCGCCTCCCTCCTCGACGAGCTCCGAGCGGCGGCGATGGCGAGCGACGGCGCGG CGGCCACGCCGGCGAAGGCGAGCCCGAAGAAGGCCAACCTCCTCGACCCCCACTCCATCAAGCACCTCCTCGACGAGACCATCTCCGACGTCGTGAAGAGCAAGGGCTACGCGGAGGACACGCGGCTGGGCAACTGGAAGCTGGCGATTGGGGCGGCCGTGATCGCCATCGCTCTCCTCGCGCAGTTCTACCCGAAGAAGTTCCCCCAGAACCGCGAGTTCCTCCTCGGCTGCATCGCATTATATGTGGTGTTGAATGT GGTGCTGTTGATAC TTAGCTATACCAAGGAAAAGGATGCCA TTATGTTCACACACCCTCCTGCGGGTTCTTTCAATAGCACTGGACTAGTTATA TCTTC AAAATTACCAA GATTCTCGGATATGTACACTATCACAATAGCCAGT GCAGAT CCCCAGTCTATTTCCGCCAATAAGCCAGTTCATTTCACTAAGAGTGTTACAAAATGGTTTACTAAGGAAGGAGTTCTCGTGGAAGGCCTGTTCTGGAAGGATGTTGAGA GGTTGATTGATGACTACAACACTGAGCGCAAGGGCAA ATGAATGGGTAGTCCATGTGACTATGA GA CGTTAATTGTCTAGAAAA GAAACCCTCTT GTGGAATTCCTTGCTT GGAAGAATCCTTAGCTTAATCAAAATAGACAATTTT GTCATACATTACTGTTTCACTGGTGATTGAAATACTGTCGAAGACACCCG                                                                                                                                                                                                                                                             ]
[+] EMBL C26903               [                                                 CCTCGACGAGCTCCGAGCGGCGGCGATGGCGAGCNACGGCGCGG CGGCCACGC  GCGAAGGCGAGCCCGAAGAAGGCCAACCTCCTCGACCCCCACTCCATCAAGCACCTCCTCGACGAGACCATCTCCGACGTCGTGAAGAGCAAGGGCTACGCGGAGGACACGCGGCTGGGCAACTGGAAGCTGGCGATTGGGGCGGCCGTNATCGCCATCGCTCTCCTCGCGCAGTTCTACCCGAAGAAGTTCCCCCAGAACCGCGAGTTCCTCCTCGGCTGCATCGCATTATATGTGGTGTTGAATGTGGGTGCTGTTGATACTTTAGCTATACCAAGGAAAAGGATGCCATTTATGTTNACACAACNTCCTGCGGGTTCTTTCAATAGCACTGGACTAGTTATATTTTTN AAATTTACCAA GATTCTCGGATATNTACACTATTANAAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL OSC102301            [                                                                         GATGGCGAGCGACGGCGCGGACGGCCAAG CGACGAAGGCGAACCCNAAGAAGGCCAACCTCCNCGACCCCCANTCCATCAAGCACCTCCTCGACGAGACCATCTCCGACGTCGTAAAGAGCAAGGNCTACGCGGAGGACACGCGGCTGGGCAACTGGAAGCTGGCGATTGGGGCGGCCGTNATCGACATCGCTCTCCTCGCGCANTTCTACCCGAAGAAGTTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL AU063074             [                                                                              CGAGCGACGGCG GG CGGCCAC    NCGAAGGCGAGCCCGAAGAAGGCCAACCTCCTCGACCCCCACTCCATCAAGCACCTCCTCGACGAGACCATCTCCGACGTCGTGAAGAGCAAGGGCTACGCGGAGGACACGCGGCTGGGCAACTGGAAGCTGGCGATTGGGGCGGCCGTGATCGCCATCGCTCTCCTCGCGCAGTTCTACCCGAAGAAGTTCCCCCAGAACCGCGAGTTCCTCCTCGGCTGCATCGCATTATATGTGGTGTTGAATGT GGTGCTGTTGATAC TTAGCTATACCAAGGAAAAGGATGCCA TTATGTTCACACACCCTCCTGCGGGTTCTTTCAATAGCACTNGACT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL AU100618             [                                                                                                                            AGGCCAACTTCTTCGACCCCCACTCCATCAAGCACCTCCTCGACGAGACCATCTCCGACGTCGTGAAGAGCAAGGG TACGCGGAGGACACGCGGCTGGGCAACTGGAAGCTGGCGATTGGGGCGGCCGTGATCGCCATCGCTCTCCTCGCGCAGTTCTACCCGAAGAAGTTCCCCCAGAACCGCGAGTTCCTCCTCGGCTGCATCGCATTATATGTGGTGTTGAATGT GGTGCTGTTGATAC TTAGCTATACCAAGGAAAAGGATGCCA TTATGTTCACACACCCT CTGCGGGTTCTTTCAATAGCACTGGACTAGTTATA TCTTC AAAATTACCAA GATTCTCGGATATGTACACTATCACAATAGCCAGT GCAGAT CCCCAGTCTATTTCCGCCAATAAGCCAGTTCATTTCACTAAGAGTGTTACAAAATGGTTTACTAAGGAAGGAGTTCTCGTGGAAGGCCTGTTCTGGAAGGATGTTGAGA GGTTGATTGATGACTACAACACTGAGCGCAAGGGCAA ATGAATGGGTAGTCCATGTGACTATGA GA CGTTAATTGTCTAGAAAA GAAACCCTCTT GTGGAATTCCTTGCTT GGAAGAATCCTTAGCTTAATCAAAATAGACAATTTT GTCATACATTACTGTTTCACTGGTGATTGAAATACTGTCGAAGACACCCGGTACCAaaaaaa                                                                                                                                                                                                                                                 ]
[+] EMBL BI797445             [                                                                                                                                                                                                     GGGCTACCGGGAGGACACGC GCTGGGCAACTGGAA CTGGCGATT GGGC GCCGTGATC CCATCGCTCTCCTCGC CAGTTCTACCCGAAGAAGTTCCCCCAGAACCGCGAGTTCCTCCTCGGCTGCATCGCATTATATGTGGTGTTGAATGT GGTGCTGTTGATAC TTAGCTATACCAAGGAAAAGGATGCCA TTATGTTCACACACCCTCCTGCGGGTTCTTTCAATAGCACTGGACTAGTTATA TCTTC AAAATTACCAA GATTCTCGGATATGTACACTATCACAATAGCCAGT GCAGAT CCCCAGTCTATTTCCGCCAATAAGCCAGTTCATTTCACTAAGAGTGTTAC AAATGGTTTACTAAGGAAGGAGTTCTCGTGGAAGGCCTGTTCTGGAAGGATGTTGAGA GGTTGATTGATGACTACAACACTGAGCGC AGGGCAA ATGAATGGGTAGTCCATGTGACTATGA GA CGTTAATTGTCTAGAAAA GAAACCCTCTT GTGGAATTCCTTGCTT GGAAGAATCCTTAGCTTAATC AAATAGAC ATTTT GTCATAaaaaaaa                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AU097184             [                                                                                                                                                                                                                                                                                                                                                                                                                                                        ctcAGTTATA TCTTCNAAAATTACCAANGATTCCCGGATATGTACACTATCACAATAGCCAGTCGCAGATCCCCCAGTCTATTTCCGCCAATAAGCCAGTTCATTTCACTAAGAGTGTTACAAAATGGTTTACTAAGGAAGGAGTTCTCGTGGAAGGCCTGTTCTGGAAGGATGTTGAGANGGTTGATTGATGACTACAACACTGAGCGCAAGGGCAANATGAATGGGTAGTCCATGTGACTATGACGACCGTTAATTGTCTAGAAAANGAAACCCTCTTNGTGGAATTCCTTGCTTNGGAAGAATCCTTAGCTTAATCAAAATAGACAATTTTCGTCATACATTACT TTTCACTGGTGATTGAAATACTGTCGAAGACACCCGGTACCATCCCAAaaaaaaaa                                                                                                                                                                                                                                         ]
[+] EMBL AU085784             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ATGA GA CGTTAATTGTCTAGAAAA GAAACCCTCTT GTGGAATTCCTTGCTT GGAAGAATCCTTAGCTTAATCAAAATAGACAATTTT GTCATACATTACTGTTTCACTGGTGATTGAAATACTGTCGAAGAC CACGGTACCATCCCAATTCTTnt                                                                                                                                                                                                                                          ]


>consensus_13488#0 TGAGCCCGCATCGTCTCGTCTCCCTCTCCCTCTCCCACCCCGCCTCCCTCCTCGACGAGC TCCGAGCGGCGGCGATGGCGAGCGACGGCGCGGCGGCCACGCCGGCGAAGGCGAGCCCGA AGAAGGCCAACCTCCTCGACCCCCACTCCATCAAGCACCTCCTCGACGAGACCATCTCCG ACGTCGTGAAGAGCAAGGGCTACGCGGAGGACACGCGGCTGGGCAACTGGAAGCTGGCGA TTGGGGCGGCCGTGATCGCCATCGCTCTCCTCGCGCAGTTCTACCCGAAGAAGTTCCCCC AGAACCGCGAGTTCCTCCTCGGCTGCATCGCATTATATGTGGTGTTGAATGTGGTGCTGT TGATACTTAGCTATACCAAGGAAAAGGATGCCATTATGTTCACACACCCTCCTGCGGGTT CTTTCAATAGCACTGGACTAGTTATATCTTCAAAATTACCAAGATTCTCGGATATGTACA CTATCACAATAGCCAGTGCAGATCCCCAGTCTATTTCCGCCAATAAGCCAGTTCATTTCA CTAAGAGTGTTACAAAATGGTTTACTAAGGAAGGAGTTCTCGTGGAAGGCCTGTTCTGGA AGGATGTTGAGAGGTTGATTGATGACTACAACACTGAGCGCAAGGGCAAATGAATGGGTA GTCCATGTGACTATGAGACGTTAATTGTCTAGAAAAGAAACCCTCTTGTGGAATTCCTTG CTTGGAAGAATCCTTAGCTTAATCAAAATAGACAATTTTGTCATACATTACTGTTTCACT GGTGATTGAAATACTGTCGAAGACACCCGGTACCATCCCAATTCTTTTTTATGAGCTTAC AAGCCTATCGATGGTTAATCATAGATACCAGCACTGAGCTCTGTACGTTCTGCTTATATG ACAACATGAATGAAATTGCCTCAGGAAAACAGAAAAATGTATTATGCCAATAGCCAAAAA TCCTTGTAAATAATTCCTTCTGTACACATATTTTGGACTGGTAAGGTACCAACAACTACC AGTGTCGTCGAAATACGTACTCTCCTCGTCCCAAAATATAAG



consensusID : consensus_13488#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 437
fasta sequence
                              [TTATATCTTCAAAATTACCAAGATTCTCGGATATGTACACTATCNCAATAGCCAGTGCAGATCCCCAGTCTATTTCCGCCAATAAGCCAGTTCATTTCACTAAGAGTGTTACAAAATGGTTTACTAAGGAAGGAGTTCTCGTGGAAGGCCTGTTCTGGAAGGATGTTGAGAGGTTGATTGATGACTACAACACTGAGCGCAAGGGCAAATGAATGGGTAGTCCATGTGACTATGAGACGTTAATTGTCTAGAAAAGAAACCCTCTTGTGGAATTCCTTGCTTGGAAGAATCCTTAGCTTAATCAAAATAGACAATTTTGTCATACATTACTGTTTCACTGGTGATTGAAANACTGTCGAAGACACCCGGNACCATCCCAATTCTTTTTTATGAGCTTACAAGCCTATCGATGGTTAATCATAAAAAAAAAAAAAAAA]

[+] EMBL AU181562             [TTATATCTTCAAAATTACCAAGATTCTCGGATATGTACACTATCNCAATAGCCAGTGCAGATCCCCAGTCTATTTCCGCCAATAAGCCAGTTCATTTCACTAAGAGTGTTACAAAATGGTTTACTAAGGAAGGAGTTCTCGTGGAAGGCCTGTTCTGGAAGGATGTTGAGAGGTTGATTGATGACTACAACACTGAGCGCAAGGGCAAATGAATGGGTAGTCCATGTGACTATGAGACGTTAATTGTCTAGAAAAGAAACCCTCTTGTGGAATTCCTTGCTTGGAAGAATCCTTAGCTTAATCAAAATAGACAATTTTGTCATACATTACTGTTTCACTGGTGATTGAAANACTGTCGAAGACACCCGGNACCATCCCAATTCTTTTTTATGAGCTTACAAGCCTATCGATGGTTAATCATAAAAAAAAAAAAAAAA]


>consensus_13488#1 TTATATCTTCAAAATTACCAAGATTCTCGGATATGTACACTATCNCAATAGCCAGTGCAG ATCCCCAGTCTATTTCCGCCAATAAGCCAGTTCATTTCACTAAGAGTGTTACAAAATGGT TTACTAAGGAAGGAGTTCTCGTGGAAGGCCTGTTCTGGAAGGATGTTGAGAGGTTGATTG ATGACTACAACACTGAGCGCAAGGGCAAATGAATGGGTAGTCCATGTGACTATGAGACGT TAATTGTCTAGAAAAGAAACCCTCTTGTGGAATTCCTTGCTTGGAAGAATCCTTAGCTTA ATCAAAATAGACAATTTTGTCATACATTACTGTTTCACTGGTGATTGAAANACTGTCGAA GACACCCGGNACCATCCCAATTCTTTTTTATGAGCTTACAAGCCTATCGATGGTTAATCA TAAAAAAAAAAAAAAAA



consensusID : consensus_13488#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 424
fasta sequence
                              [TTCTGTTCCGCACCGCATCCTCCTCCGTTTCGCCGGCGACGACGCGGATGGCGACCGACGGCGGCGGCGCCACCCCCTCACCGGCGGCGAAGAAGGCCAACCTCCTCGACCCCTACTCCATCAAGCATCTCCTCGACGAGACCGTCTCCGAGGTCGCGAAGAGCAAGGGGTACCCAGAGGACGCGCGGCTGAGCAACCGGAGGCTGGCGGTCGGCGCGGCGGTGATCGCCGTCGCGCTCCTCGCGCAGTTCTACCCCCGCAAGTTCCCCGAGAACAGGGACGTCCTCCTCGCCTGCATCGCGCTGTACGCGGCGCTCAACGTGGCGCTGCAGATCGTTACATACACCAAGGAGAAGAACGCCATCCTCTTCACGTACCCTCCCGCGGGATCATTTAATAGGACTGGGCTTGTTATATCTTCAAA]

[+] EMBL AK102047             [TTCTGTTCCGCACCGCATCCTCCTCCGTTTCGCCGGCGACGACGCGGATGGCGACCGACGGCGGCGGCGCCACCCCCTCACCGGCGGCGAAGAAGGCCAACCTCCTCGACCCCTACTCCATCAAGCATCTCCTCGACGAGACCGTCTCCGAGGTCGCGAAGAGCAAGGGGTACCCAGAGGACGCGCGGCTGAGCAACCGGAGGCTGGCGGTCGGCGCGGCGGTGATCGCCGTCGCGCTCCTCGCGCAGTTCTACCCCCGCAAGTTCCCCGAGAACAGGGACGTCCTCCTCGCCTGCATCGCGCTGTACGCGGCGCTCAACGTGGCGCTGCAGATCGTTACATACACCAAGGAGAAGAACGCCATCCTCTTCACGTACCCTCCCGCGGGATCATTTAATAGGACTGGGCTTGTTATATCTTCAAA]
[+] EMBL AK061593             [                                 CGGCGACGACGCGGATGGCGACCGACGGCGGCGGCGCCACCCCCTCACCGGCGGCGAAGAAGGCCAACCTCCTCGACCCCTACTCCATCAAGCATCTCCTCGACGAGACCGTCTCCGAGGTCGCGAAGAGCAAGGGGTACCCAGAGGACGCGCGGCTGAGCAACCGGAGGCTGGCGGTCGGCGCGGCGGTGATCGCCGTCGCGCTCCTCGCGCAGTTCTACCCCCGCAAGTTCCCCGAGAACAGGGACGTCCTCCTCGCCTGCATCGCGCTGTACGCGGCGCTCAACGTGGCGCTGCAGATCGTTACCTACACCAAGGAGAAGAACGCCATCCTCTTCACGTACCCTCCCGCGGGATCATTTAATAGGACTGGGCTTGTTATATCTTCAAA]


>consensus_13488#2 TTCTGTTCCGCACCGCATCCTCCTCCGTTTCGCCGGCGACGACGCGGATGGCGACCGACG GCGGCGGCGCCACCCCCTCACCGGCGGCGAAGAAGGCCAACCTCCTCGACCCCTACTCCA TCAAGCATCTCCTCGACGAGACCGTCTCCGAGGTCGCGAAGAGCAAGGGGTACCCAGAGG ACGCGCGGCTGAGCAACCGGAGGCTGGCGGTCGGCGCGGCGGTGATCGCCGTCGCGCTCC TCGCGCAGTTCTACCCCCGCAAGTTCCCCGAGAACAGGGACGTCCTCCTCGCCTGCATCG CGCTGTACGCGGCGCTCAACGTGGCGCTGCAGATCGTTACATACACCAAGGAGAAGAACG CCATCCTCTTCACGTACCCTCCCGCGGGATCATTTAATAGGACTGGGCTTGTTATATCTT CAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13488#0      TGAGCCCGCATCGTCTCGTCTCCCTCTCCCTCTCCCACCCCGCCTCCCTCCTCGACGAGC 60
consensus_13488#1      ------------------------------------------------------------
consensus_13488#2      ------------------------------------------------------------
                                                                                   

consensus_13488#0      TCCGAGCGGCGGCGATGGCGAGCGACGGCGCGGCGGCCACGCCGGCGAAGGCGAGCCCGA 120
consensus_13488#1      ------------------------------------------------------------
consensus_13488#2      ------------------------------------------------------------
                                                                                   

consensus_13488#0      AGAAGGCCAACCTCCTCGACCCCCACTCCATCAAGCACCTCCTCGACGAGACCATCTCCG 180
consensus_13488#1      ------------------------------------------------------------
consensus_13488#2      ------------------------------------------------------------
                                                                                   

consensus_13488#0      ACGTCGTGAAGAGCAAGGGCTACGCGGAGGACACGCGGCTGGGCAACTGGAAGCTGGCGA 240
consensus_13488#1      ------------------------------------------------------------
consensus_13488#2      ------------------------------------------------------------
                                                                                   

consensus_13488#0      TTGGGGCGGCCGTGATCGCCATCGCTCTCCTCGCGCAGTTCTACCCGAAGAAGTTCCCCC 300
consensus_13488#1      ------------------------------------------------------------
consensus_13488#2      ------------------------------------------------------------
                                                                                   

consensus_13488#0      AGAACCGCGAGTTCCTCCTCGGCTGCATCGCATTATATGTGGTGTTGAATGTGGTGCTGT 360
consensus_13488#1      ------------------------------------------------------------
consensus_13488#2      ------------------------------------------------------------
                                                                                   

consensus_13488#0      TGATACTTAGCTATACCAAGGAAAAGGATGCCATTATGTTCACACACCCTCCTGCGGGTT 420
consensus_13488#1      ------------------------------------------------------------
consensus_13488#2      ------------------------------------------------------------
                                                                                   

consensus_13488#0      CTTTCAATAGCACTGGACTAGTTATATCTTCAAAATTACCAAGATTCTCGGATATGTACA 480
consensus_13488#1      ---------------------TTATATCTTCAAAATTACCAAGATTCTCGGATATGTACA 39
consensus_13488#2      ----------------TTCTGTTCCGCACCGCATCCTCCTCCGTTTCGCCGGCGACGACG 44
                                            **         *   * *   * *** * *      ** 

consensus_13488#0      CT-ATCACAATAGCCAGTGCAGATCCCCAGTCTATTTCCGCCAATAAGCCAGTTCATTTC 539
consensus_13488#1      CT-ATCNCAATAGCCAGTGCAGATCCCCAGTCTATTTCCGCCAATAAGCCAGTTCATTTC 98
consensus_13488#2      CGGATGGCGACCGACGGCGGCGG-CGCCACCCCCTCACCGGCGGCGAAGAAGGCCAACCT 103
                       *  **  * *  * * * *  *  * ***  *  *  *** *    *   **  **    

consensus_13488#0      ACTAAGAGTGTTACAAAATGGTTTACTAAGGAAGGAGTTCTCGTGGAAGGCCTGTTCTGG 599
consensus_13488#1      ACTAAGAGTGTTACAAAATGGTTTACTAAGGAAGGAGTTCTCGTGGAAGGCCTGTTCTGG 158
consensus_13488#2      CCTC-GACCCCTAC-------TCCATCAAGCA------TCTCCTCGACGAGACCGTCTCC 149
                        **  **    ***       *  *  *** *      **** * ** *      ***  

consensus_13488#0      AAGGATGTTGAGAGGTTGATTGATGACTACAACACTGAGCGCAAGGGCAAATGAATG--G 657
consensus_13488#1      AAGGATGTTGAGAGGTTGATTGATGACTACAACACTGAGCGCAAGGGCAAATGAATG--G 216
consensus_13488#2      GAGGTCGCGAAGAG--CAAGGGGTACCCAGAGGAC-GCGCGGCTGAGCAACCGGAGGCTG 206
                        ***  *   ****    *  * *  * * *  ** * ***   * ****  * * *  *

consensus_13488#0      GTAGTCCATGTGACTATGA--GACGTTAATTGTCTAGAAAAGAAACCCTCTTGTGGAATT 715
consensus_13488#1      GTAGTCCATGTGACTATGA--GACGTTAATTGTCTAGAAAAGAAACCCTCTTGTGGAATT 274
consensus_13488#2      GCGGTCGGCGCGGCGGTGATCGCCGTCGCGCTCCTCGCGCAGTTCTACCCCCGCA-AGTT 265
                       *  ***   * * *  ***  * ***       ** *   **     * *  *   * **

consensus_13488#0      CCTTGCTTGGAAGAATCCTTAGCTTAATCAAAATAGACAATTT-TGTCATACATTACTGT 774
consensus_13488#1      CCTTGCTTGGAAGAATCCTTAGCTTAATCAAAATAGACAATTT-TGTCATACATTACTGT 333
consensus_13488#2      CCCCGAGAACAGGGACGTCCTCCTCGCCTGCATCGCGCTGTACGCGGCGCTCAACGTGGC 325
                       **  *     * * *       **       *     *  *    * *   **     * 

consensus_13488#0      TTCACTGGTGATTGAA-ATACTGTCGAAGACACC-CGGTACCATCCCAATTCTTTTTTAT 832
consensus_13488#1      TTCACTGGTGATTGAA-ANACTGTCGAAGACACC-CGGNACCATCCCAATTCTTTTTTAT 391
consensus_13488#2      GCTGCAGATCGTTACATACACCAAGGAGAAGAACGCCATCCTCTTCACGTACCCTCCCGC 385
                           * * *  **  * * **    **  * * * *    *  * *   * *  *     

consensus_13488#0      GAGCTTACAAGCCTATCGATGGTTAATCATAGATACCAGCACTGAGCTCTGTACGTTCTG 892
consensus_13488#1      GAGCTTACAAGCCTATCGATGGTTAATCATAAAAAAAAAAAAAAAA-------------- 437
consensus_13488#2      GGGATCATTTAATAGGACTGGGCTTGTTATATCTTCAAA--------------------- 424
                       * * * *             ** *  * ***      *                      

consensus_13488#0      CTTATATGACAACATGAATGAAATTGCCTCAGGAAAACAGAAAAATGTATTATGCCAATA 952
consensus_13488#1      ------------------------------------------------------------
consensus_13488#2      ------------------------------------------------------------
                                                                                   

consensus_13488#0      GCCAAAAATCCTTGTAAATAATTCCTTCTGTACACATATTTTGGACTGGTAAGGTACCAA 1012
consensus_13488#1      ------------------------------------------------------------
consensus_13488#2      ------------------------------------------------------------
                                                                                   

consensus_13488#0      CAACTACCAGTGTCGTCGAAATACGTACTCTCCTCGTCCCAAAATATAAG 1062
consensus_13488#1      --------------------------------------------------
consensus_13488#2      --------------------------------------------------
                                                                         




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)