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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13496#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1319 fasta sequence
[TGGAGTTCGGCGAGCCGTTCCGCTTCGGCCTGGAGGCGGCTCCAAGCCCGAGCTGCTGCTCGCCATGAGCTGCCTCGCCGCGCGCGGCAACCCGGACGCCCTGCTCATCTGCAACGGCTACAAGGACGACGAGTACGTCTCGCTCGCGCTCATCGCGCGCACCATGGGGCTCAACACGGTCATCGTGCTCGAGCAGGAGGAGGAGCTCGACATTGTGGTCGACGCTAGCCGCCGCCTCGGCGTGCGCCCGGTGGTCGGCATGCGCGCCAAGCTGCGCACCAAGCACGCCGGCCACNTCGGCTCCACGTCCGGGGAGAAGGGCAAGTTCGGCCTCAACGCCGCGCAGATTCTCTCCGTCGTCGCCAAGCTCAAGACCCTTGGTATG-CTCGACTGCCTCCAGCTCCTGCAC-TTCCACATTGGCTCCCAGATCCCGACCACTGCTCTGCTCGGCGATGGCGTCGGGGAGGCCGCGCAGATCTACTGCGAGCTCGCCCGCCTGGGCGCGGCCATGCGCGTCATCGACGTTGGTGGAGGCCTCGGCATTGACTACGACGGGAGTCACTCGGCGCAGACCGACATGTCCGTGGCATACAGCTTGGAGGAGTACGCGGCGGCCGTGGTGGCCGCCGTCGGCCGCGTCTGTGACCGCAAGGGCGTCGCGCATCCCATCATCTGCAGCGAGAGCGGCCGCGCGCTGGTGTCGCACCACTCTGTCCT-GGTGTTCGAGGCCTTCTCGGCTTCGGCGCCCGGCCGCATTGACCCGGCCACGGGCTACCTGCTCGACGAGCTCACCGACGACTGCCACGCCGACTACCGCAACCTCATGGCCGCCGCGGTGCGCGGCGAC-TTCGACACCTGCGCTCTGTACGCCGACCAGCTGAAGCGGCGCTGCGCCGATCAGTTCAAGGACGGCGTTCTTGGCCTGGAGCACCTCGCCGCGGTGGACAGCCTCTGCG-AGATCGTCGCCCGCGGCATGGGCGCCGCCGAGCCGCCGCGCACGTACCACATCAACCTGTCCGTGTTCACCTCCCTGCCGGACATGTGGGCGATCGGGCAGATGTTCCCGATCATCCCAATCCAGCGCCTCGGTGAGCGCCCTGCGGTC-GACGGC-GTCCTCTCCGACCTCACCTGCGACAGCGACGGCAAGGTCGACCACTTCATCGGCGGGAGGCACAGCCTGCCGCTGCACGAGCTCCCCGTCCACGGCACCGCGGCTACTNCCTCGGCATGTTCCTCGGCGGCGCCTACCANGANGCCTCGGGGGCCTCCACAACCTGTTCGGCNGGCCNAACGTNGTNCGCGTGTCCANAACGACGGGC]
[+] EMBL AU078261 [TGGAGTTCGGCGAGCCGTTCCGCTTCGGCCTGGAGGCGGCTCCAAGCCCGAGCTGCTGCTCGCCATGAGCTGCCTCGCCGCGCGCGGCAACCCGGACGCCCTGCTCATCTGCAACGGCTACAAGGACGACGAGTACGTCTCGCTCGCGCTCATCGCGCGCACCATGGGGCTCAACACGGTCATCGTGCTCGAGCAGGAGGAGGAGCTCGACATTGTGGTCGACGCTAGCCGCCGCCTCGGCGTGCGCCCGGTGGTCGGCATGCGCGCCAAGCTGCGCACCAAGCACGCCGGCCACNTCGGCTCCACGTCCGGGGAGAAGGGCAAGTTCGGCCTCAACGCCGCGCAGATTCTCTCCGTCGTCGCCAAGCTCAAGACCCTTGGTATGACTCGACTGCCTCCAGCTCCTGCACTTTCCACATTGGCTCCCAGATCCCGACCACNGCTCTGCTtcg ]
[+] EMBL CA754598 [ GCTCGAGCAGGAGGAGGAGCTCGACATTGTGGTCGACGCTAGCCGCCGCCTCGGCGTGCGCCCGGTGGTCGGCATGCGCGCCAAGCTGCGCACCAAGCACGCCGGCCACTTCGGCTCCACGTCCGGGGAGAAGGGCAAGTTCGGCCTCAACGCCGCGCAGATTCTCTCCGTCGTCGCCNAGCTCAAGACCCTTGGTATG CTCGACTGCCTCCAGCTCCTGCAC TTCCACATTGGCTCCCAGATCCCGACCACTGCTCTGCTCGGCGATGGCGTCGGGGAGGCCGCGCAGATCTACTGCGAGCTCGCCCGCCTGGGCGCGGCCATGCGCGTCATCGACGTTGGTGGAGGCCTCGGCATTGACTACGACGGGAGTCACTCGGCGCAGACCGACATGTCCGTGGCATACAGCTTGGAGGAGTACGCGGCGGCCGTGGTGGCCGCCGTCGGCCGCGTCTGTGACCGCAAGGGCGTCGCGCATCCCATCATCTGCAGCGAGAGCGGCCGCGCGCTGGTGTCGCACCACTCTGTCCTGGGTG TCGAGGGCTTCTCGGNTTCGGCGCCCGGCCGCATTGACCCGGNCACGGCCTACCTGCTCGACGAGgt ]
[+] EMBL AU078262 [ AAGGGCAAGTTCGGCCTCAACGCCGCGCAGATTCTCTCCGTCGTCGCCAAGCTCAAGACCCTTGGTATG CTCGACTGCCTCCAGCTCCTGCAC TTCCACATTGGCTCCCAGATCCCGACCACTGCTCTGCTCGGCGATGGCGTCGGGGAGGCCGCGCAGATCTACTGCGAGCTCGCCCGCTTGGGCGCGGCNATGCGCGTCATCGACGTTGGTGGAGGCCTCGGNATTGACTACGACGGGAGTCACTCGGCGCAGACCGACATGTCCGTGGCATACAGCTTGGAGGNGTACGC GCGGCCGTGGTGGCCGCCGTCGGCCGCGTCTGTGACCGCAAGGGCGTCGCGCATCCCATCATCTGCAGC ]
[+] EMBL AU078207 [ TCTCCGTCGTCGCCAAGCTCAAGACCCTTGGTATG CTCGACTGCCTCCAGCTCCTGCAC TTCCACATTGGCTCCCAGATCCCGACCACTGCTCTGCTCGGCGATGGCGTCGGGGAGGCCGCGCAGATCTACTGCGAGCTCGCCCGCCTGGGCGCGGCCATGCGCGTCATCGACGTTGGTGGAGGCCTCGGCATTGACTACGACGGGAGTCACTCGGCGCAGACCGACATGTCCGTGGCATACAGCTTGGAGGAGTACGCGGCGGCCGTGGTGGCCGCCGTCGGCCGCGTCTGTGACCGCAAGGGCGTCGCGCATCCCATCATC ]
[+] EMBL AU078208 [ TG CTCGACTGCCTCCAGCTCCTGCAC TTCCACATTGGCTCCCAGATCCCGACCACTGCTCTGCTCGGCGATGGCGTCGGGGAGGCCGCGCAGATCTACTGCGAGCTCGCCCGCCTGGGCGCGGCCATGCGCGTCATCGACGTTGGTGGAGGCCTCGGCATTGACTACGACGGGAGTCACTCGGCGCAGACCGACATGTCCGTGGCATACAGCTTGGAGGAGTACGC GCGGCCGTGGTGGCCGCCGTCGGCCGCGTCTGTGACCGCAAGGGCGTCGCGCATCCCATCATCTGCAGC ]
[+] EMBL CB653383 [ nACGGGCGTCTCTCGGCGCAGACCGACATGTCCGTGGCATACAGCTTGGAGGAGTACGCGGCGGCCGTGGTGGCCGCCGTCGGCCGCGTCTGTGACCGCAAGGGCGTCGCGCATCCCATCATCTGCAGCGAGAGCGGCCGCGCGCTGGTGTCGCACCACTCTGTCCT GGTGTTCGAGGCCTTCTCGGCTTCTGCGCCCGGCCGCATTGACCCGGCCACGGGCTACCTGCTCGACGAGCTCACCGACGACTGCCACGCCGACTACCGCAACCTCATGGCCGCCGCGGTGCGCGGCGAC TTCGACACCTGCGCTCTGTACGCCGACCATCTGAAGCGGCGCTGCGCCGATCAGTTCAAGGACGGCGTTCTTGGCCTGGAGCACCTCGCCGCGGTGGACAGCCTCTGCG AGATCGTCGCCCGCGGCATGGGCGCCGCCGAGCCGCCGCGCACGTACCACATCAACCTGTCCGTGTTCACCTCCCTGCCGGACATGTGGGCGATCGGGCAGATGTTCCCGATCATCCCAATCCAGCGCCTCGGTGAGCGCCCTGCGGTC GACGGC GTCCTCTCCGACCTCACCTGCGACAGCGACGGCAAGGTCGACCACTTCATCGGCGGGAGGCACAGCCTGCCGCTG ]
[+] EMBL AU056474 [ CTGGTGTCGCACCACTCTGTCCT GGTGTTCGAGGCCTTCTCGGCTTCGGCGCCCGGCCGCATTGACCCGGCCACGGGCTACCTGCTCGACGAGCTCACCGACGACTGCCACGCCGACTACCGCAACCTCATGGCCGCCGCGGTGCGCGG GACTTTCGACACCTGCGCTCTGTACGCCGACCAGCTGAAGCGGCGCTGCGCCGATCAGTTCAAGGACGGCGTTCTTGGCCTGGAGCACCTCGCCGCGGTGGACAGCCTCTGCG AGATCGTCGCCCGCGGCATGGGCGCCGCCGAGCCGCCGCGCACGTACCACATCAACCTGTCCGTGTTCACCTCCCTGCCGGACATGTGGGCGATCGGGCAGATGTTCCCGATCATCCCAATCCAGCGCCTCGGTGA ]
[+] EMBL C99671 [ GTGTCGCACCACTCTGTCCT GGTGTTCGAGGCCTTCTCGGCTTCGGCGCCCGGCCGCATTGACCCGGNCACGGGCTACCTGCTCGACGAGCTCACCGACGACTGCCACGCCGACTACCGCAACCTCATGGCCGCCGCGGTGCGCGG GACNTTCGACACCTGCGCTCTGTACGCCGACCAGCTGAAGCGGCGCTGCGCCGATCAGTTCAAGGACGGCGTTCTTGGCCTGGAGCACCTCGCCGCGGTGGACAGCCTCTGCG AGATCGTCGCCCGCGGCATGGGCGCCGCCGAGCCGCCGCGCACGTACCACATCAACCTGTCCGTGTTCACCTCCCTGCCGGACATGTGGGCGATCGGGCAGATGTTCCCGATCATCCCAATCCAGCGCCTCGGTGAGCGCCCTGCGGTC GACGGC GTCCTCTCCGACCTCACC ]
[+] EMBL AU078278 [ TGTCGCA CACTCTGTCCT GGTGTTCGAGGCCTTCTCGGCTTCGGCGCCCGGCCGCATTGACCCGGCCAC GCTACCTGCTCGACGAGCTCACCGACGACTGCCACGCCGACTACCGCAACCTCATGGCCGCCGCGGTGCGC GANCT TTCGACACCTGCGCTCTGTACGCCGACCAGCTGAAGCGGCGCTGCGCCGATCAGTTCAAGGACGGCGTTCTTGGCCTGGAGCACCTCGCCGCGGTGGACAGCCTCTGCG AGATCGTCGCCCGCGGCATGGGCGCCGCCGAGCCGCCGCGCACGTACCACATCAACCTGTCCGTGTTCACCTCCCTGCCGGACATGTGGGCGATCGGGCAGATGTTCCCGATCATCCCAATCCAGCGCCTCGGTGAGCGCCCTGCGGTCGGACGGCAGTCCTCTCC ]
[+] EMBL AU078180 [ TCGCACCACTCTGTCCT GGTGTTCGAGGCCTTCTCGGCTTCGGCGCCCGGCCGCATTGACCCGGCCACGGGCTACCTGCTCGACGAGCTCACCGACGACTGCCACGCCGACTACCGCAACCTCATGGCCGCCGCGGTGCGCGGCGAC TTCGACACCTGCGCTCTGTACGCCGACCAGCTGAAGCGGCGCTGCGCCGATCAGTTCAAGGACGGCGTTCTTGGCCTGGAGCACCTCGCCGCGGTGGACAGCCTCTGCG AGATCGTCGCCCGCGGCATGGGCGCCGCCGAGCCGCCGCGCACGTACCACATCAACCTGTCCGTGTTCACCTCCCTGCCGGACATGTGGGCGATCGGGCAGATGTTCCCGATCATCCCAATCCAGCGCCTCGGTGAGCGCCCTGCGGTC G ]
[-] EMBL AU078181 [ CGCACCACTCTGTCCT GGTGTTCGAGGCCTTCTCGGCTTCGGCGCCCGGCCGCATTGACCCGGCCACGGGCTACCTGCTCGACGAGCTCACCGACGACTGCCACGCCGACTACCGCAACCTCATGGCCGCCGCGGTGCGCGGCGAC TTCGACACCTGCGCTCTGTACGCCGACCAGCTGAAGCGGCGCTGCGCCGATCAGTTCAAGGACGGCGTTCTTGGCCTGGAGCACCTCGCCGCGGTGGACAGCCTCTGCG AGATCGTCGCCCGCGGCATGGGCGCCGCCGAGCCGCCGCGCACGTACCACATCAACCTGTCCGTGTTCACCTCCCTGCCGGACATGTGGGCGATCGGGCAGATGTTCCCGATCATCCCAATCCAGCGCCTCGGTGAGCGCCCTGCGGTC GACGGC GTCCTCTCCGACCTCACCTGCGACAGCGACGGCAAGGTCGACCACTTCATCGGCGGGAGGCACAGCCTGCCGCTGCACGAGCTCCCCGTCCACG ]
[+] EMBL BE228623 [ GACCAGCTGAAGCGGCGCTGCGCCGATCAGTTCAAGGACGGNGTTCTTGGCCTGGAGCACCTCGCCGCGGTGGACAGCCTCTGCGAAGATCGTCGCCCGCGGCATGGGCGCCGCCGAGCCGCCGCGCACGTACCACATCAACCTGTCCGTGTTCACCTCCCTGCCGGACATGTGGGCGATCGGGCAGATNTTCCCGATCATCCCAATCCAGCGCCTCGGTGAGCGCCCTGCGGTC NACGGC GTCCTCTCCGAACTCACCTGCGACAGC ACGGCAA GTCGACCACTTCATCGGCGGGAGGCACAGCCTGCCGCTGCACGAGCT CCCGTCCACGGCACCGCGGCTACTNCCTCGGCATGTTCCTCGGCGGCGCCTACCANGANGCCTCGGGGGCCTCCACAACCTGTTCGGCNGGCCNAACGTNGTNCGCGTGTCCANAACGACGGGC]
consensusID : consensus_13496#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 202 fasta sequence
[TCGCACCACTCTGTCCTGGTGTTCGAGGCCTNNNNGGCTTCGGCGCCCGNCNGCATTGACCCGGCCACGGCTACCTANTCGACGAGCTCACCGACGACTGCNACGCCGACTACCGCAACCTCATGGCCGCCGCGGTGCNCGCGANCTTCNACACNTGCNCTCTGTACGCCGACCAGCTGAAGCGGCGCTGCGCCGATCAGTT]
[+] EMBL AU078730 [TCGCACCACTCTGTCCTGGTGTTCGAGGCCTNNNNGGCTTCGGCGCCCGNCNGCATTGACCCGGCCACGGCTACCTANTCGACGAGCTCACCGACGACTGCNACGCCGACTACCGCAACCTCATGGCCGCCGCGGTGCNCGCGANCTTCNACACNTGCNCTCTGTACGCCGACCAGCTGAAGCGGCGCTGCGCCGATCAGTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13496#0 TGGAGTTCGGCGAGCCGTTCCGCTTCGGCCTGGAGGCGGCTCCAAGCCCGAGCTGCTGCT 60
consensus_13496#1 ------------------------------------------------------------
consensus_13496#0 CGCCATGAGCTGCCTCGCCGCGCGCGGCAACCCGGACGCCCTGCTCATCTGCAACGGCTA 120
consensus_13496#1 ------------------------------------------------------------
consensus_13496#0 CAAGGACGACGAGTACGTCTCGCTCGCGCTCATCGCGCGCACCATGGGGCTCAACACGGT 180
consensus_13496#1 ------------------------------------------------------------
consensus_13496#0 CATCGTGCTCGAGCAGGAGGAGGAGCTCGACATTGTGGTCGACGCTAGCCGCCGCCTCGG 240
consensus_13496#1 ------------------------------------------------------------
consensus_13496#0 CGTGCGCCCGGTGGTCGGCATGCGCGCCAAGCTGCGCACCAAGCACGCCGGCCACNTCGG 300
consensus_13496#1 ------------------------------------------------------------
consensus_13496#0 CTCCACGTCCGGGGAGAAGGGCAAGTTCGGCCTCAACGCCGCGCAGATTCTCTCCGTCGT 360
consensus_13496#1 ------------------------------------------------------------
consensus_13496#0 CGCCAAGCTCAAGACCCTTGGTATGCTCGACTGCCTCCAGCTCCTGCACTTCCACATTGG 420
consensus_13496#1 ------------------------------------------------------------
consensus_13496#0 CTCCCAGATCCCGACCACTGCTCTGCTCGGCGATGGCGTCGGGGAGGCCGCGCAGATCTA 480
consensus_13496#1 ------------------------------------------------------------
consensus_13496#0 CTGCGAGCTCGCCCGCCTGGGCGCGGCCATGCGCGTCATCGACGTTGGTGGAGGCCTCGG 540
consensus_13496#1 ------------------------------------------------------------
consensus_13496#0 CATTGACTACGACGGGAGTCACTCGGCGCAGACCGACATGTCCGTGGCATACAGCTTGGA 600
consensus_13496#1 ------------------------------------------------------------
consensus_13496#0 GGAGTACGCGGCGGCCGTGGTGGCCGCCGTCGGCCGCGTCTGTGACCGCAAGGGCGTCGC 660
consensus_13496#1 ------------------------------------------------------------
consensus_13496#0 GCATCCCATCATCTGCAGCGAGAGCGGCCGCGCGCTGGTGTCGCACCACTCTGTCCTGGT 720
consensus_13496#1 ----------------------------------------TCGCACCACTCTGTCCTGGT 20
********************
consensus_13496#0 GTTCGAGGCCTTCTCGGCTTCGGCGCCCGGCCGCATTGACCCGGCCACGGGCTACCTGCT 780
consensus_13496#1 GTTCGAGGCCTNNNNGGCTTCGGCGCCCGNCNGCATTGACCCGGCCACGG-CTACCTANT 79
*********** ************** * ****************** ****** *
consensus_13496#0 CGACGAGCTCACCGACGACTGCCACGCCGACTACCGCAACCTCATGGCCGCCGCGGTGCG 840
consensus_13496#1 CGACGAGCTCACCGACGACTGCNACGCCGACTACCGCAACCTCATGGCCGCCGCGGTGCN 139
********************** ************************************
consensus_13496#0 CGGCGACTTCGACACCTGCGCTCTGTACGCCGACCAGCTGAAGCGGCGCTGCGCCGATCA 900
consensus_13496#1 CGCGANCTTCNACACNTGCNCTCTGTACGCCGACCAGCTGAAGCGGCGCTGCGCCGATCA 199
** **** **** *** ****************************************
consensus_13496#0 GTTCAAGGACGGCGTTCTTGGCCTGGAGCACCTCGCCGCGGTGGACAGCCTCTGCGAGAT 960
consensus_13496#1 GTT--------------------------------------------------------- 202
***
consensus_13496#0 CGTCGCCCGCGGCATGGGCGCCGCCGAGCCGCCGCGCACGTACCACATCAACCTGTCCGT 1020
consensus_13496#1 ------------------------------------------------------------
consensus_13496#0 GTTCACCTCCCTGCCGGACATGTGGGCGATCGGGCAGATGTTCCCGATCATCCCAATCCA 1080
consensus_13496#1 ------------------------------------------------------------
consensus_13496#0 GCGCCTCGGTGAGCGCCCTGCGGTCGACGGCGTCCTCTCCGACCTCACCTGCGACAGCGA 1140
consensus_13496#1 ------------------------------------------------------------
consensus_13496#0 CGGCAAGGTCGACCACTTCATCGGCGGGAGGCACAGCCTGCCGCTGCACGAGCTCCCCGT 1200
consensus_13496#1 ------------------------------------------------------------
consensus_13496#0 CCACGGCACCGCGGCTACTNCCTCGGCATGTTCCTCGGCGGCGCCTACCANGANGCCTCG 1260
consensus_13496#1 ------------------------------------------------------------
consensus_13496#0 GGGGCCTCCACAACCTGTTCGGCNGGCCNAACGTNGTNCGCGTGTCCANAACGACGGGC 1319
consensus_13496#1 -----------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||