Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 135 cluster # 135       Sequences # 2       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_135#0 length = 1360 sequences # 2  

consensusID : consensus_135#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1360
fasta sequence
                              [GAAGGACAGCAAAAGGCTTGAGATGTGGGACCGCCAAAAGGCAAAGCTTCAGGAGGACATTGCTGAATGCAAGACAAAGATTACGCAGGTGGACAGGGAACTTGCTGAGATCAACAAGGCAATAAGAAATATGGAGATGAAAATAAGAGAAGACACAAAAGCCAAAGAAGAAAACCTGGCGCTTGCAGAACAGGAGCACGCGAAGCGGGAATCTGCCAAAGCGAATGCTGAACGCCGACTGGAAGAAATACGCCAGAAGACAGAAGTGGAGTCTCGGTGCTTCAAAGATGATATCAAGAGGCTTGAAGATGAACTAGCCCGTCTACAAAAGTCGATGGGTGTTAATCATCCAACTGTTCCCTCAACCCACCCTCCTGGTGTGGCCGATCGAAACTCCACGCGGGCGCCAAAGCAGCCCACCAACCAAAGGCCATCGCCCGCGTCGAACAAGCAGTCGCAAGCGCCTACCCAGAAGACAAGCCGTCGCAGGGACTGCGTGATCTGCAAGAGGGAGGAGGCGTGCGTGATCCTGCTTCAGTGCGCCCACCAGGTGCTCTGCGTCGGTTGCAACAAGAGGCATGAGGAGAAGGGCGTGGCCCGGTGCCCCTGCTGCAATGCCAAAGTCGAGGAGAGGATCAGGGTTTTTGGCGCCAGCTCCAACTGAGGGTCACC---TGGTGGTGGTGCTGCCGATTGGGTTTTGGTGCTGATGCTGCTCTCTGCTATGCCTACCTGCCTTCTGTTTTTTCTTTCCCCCGGGGTGAGGAGAAGTTTGTGGTTTTGCTTCCTTTACCTCCTTTACTGTGAAGAATGTCTTATAGGTCTGCACCTGAGATGTTTTTACCTTGCTGCTTCAGCTGTTTCATGGATGTTATGCTGAATGGCGACTCTCTTGGGGTACATGGGTATAATTGAACCTTTTTTTTGGTTATAGGA-----AAAACAAACAAACAGCAAC-TGATTGGATACATGCAACAACAATGGTA-CATTT-CCCACCCTATACATCTGTCTAGTGGTGGTTTAAAAATATACACTCTCACTTACTCCCCTCATCACCATATACTATTCTTTTCTCTTCTTCGGGGGGGGGCCCGGTCCCCAATTCCCCTTTATGTGGTCTTTTTGCCCCCCTTACCTAGTCGTAGTGTAAACGGTCCGCTTAGGAAAACCTTTGTATTTCACTATGTGTTTGTCTTGTTTTATTCCTCTTCTTGTGGGATTAAGTATTCCTTGTTTTCTTTAGTCTTTCTATCGTCTTTATATTACGTGCATCCTGATATTTTACGTTAATTTTTATTTTAGATCACCTTATGTTCGTATTAACCAGTAATTTAGCTTCGCATTAATTATTTTTTTTTATATTATT]

[+] EMBL AK063842             [GAAGGACAGCAAAAGGCTTGAGATGTGGGACCGCCAAAAGGCAAAGCTTCAGGAGGACATTGCTGAATGCAAGACAAAGATTACGCAGGTGGACAGGGAACTTGCTGAGATCAACAAGGCAATAAGAAATATGGAGATGAAAATAAGAGAAGACACAAAAGCCAAAGAAGAAAACCTGGCGCTTGCAGAACAGGAGCACGCGAAGCGGGAATCTGCCAAAGCGAATGCTGAACGCCGACTGGAAGAAATACGCCAGAAGACAGAAGTGGAGTCTCGGTGCTTCAAAGATGATATCAAGAGGCTTGAAGATGAACTAGCCCGTCTACAAAAGTCGATGGGTGTTAATCATCCAACTGTTCCCTCAACCCACCCTCCTGGTGTGGCCGATCGAAACTCCACGCGGGCGCCAAAGCAGCCCACCAACCAAAGGCCATCGCCCGCGTCGAACAAGCAGTCGCAAGCGCCTACCCAGAAGACAAGCCGTCGCAGGGACTGCGTGATCTGCAAGAGGGAGGAGGCGTGCGTGATCCTGCTTCAGTGCGCCCACCAGGTGCTCTGCGTCGGTTGCAACAAGAGGCATGAGGAGAAGGGCGTGGCCCGGTGCCCCTGCTGCAATGCCAAAGTCGAGGAGAGGATCAGGGTTTTTGGCGCCAGCTCCAACTGAGGGTCACC   TGGTGGTGGTGCTGCCGATTGGGTTTTGGTGCTGATGCTGCTCTCTGCTATGCCTACCTGCCTTCTGTTTTTTCTTTCCCCCGGGGTGAGGAGAAGTTTGTGGTTTTGCTTCCTTTACCTCCTTTACTGTGAAGAATGTCTTATAGGTCTGCACCTGAGATGTTTTTACCTTGCTGCTTCAGCTGTTTCATGGATGTTATGCTGAATGGCGACTCTCTTGGGGTACATGGGTATAATTGAACCTTTTTTTTGGTTATAGGA     AAAACAAACAAACAGCAAC TGATTGGATACATGCAACAACAATGGTA CATTT CCCACCCTATACATCTGTCT                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL BE039770             [                                                                                                                                                                                                                                                                                                                                                                                                                                                ATCGCCCGCGTCGAACAAGCAGTCGCAAGCGCCTACCCAGAAGGCAAGCCGTCGCAGGGACTGCGTGATCTGCAAGAGGGAGGAGGCGTGCGTGATCCTGCTTCAGTGCGCCCACCAGGTGCTCTGCGTCGGCTGCAACAAGAGGCATGAGGAGAAGGGCGTGGCCCGGTGCCCCTGCTGCAATGCCAAAGTCGAGGAGAGGATCAGGGTTTTTGGCGCCAGCTCCAACTGAGGGTCACCTGGTGGTGGTGGTGCTGCCGATTGGGTTTTGGTGCTGATGCTGCTCTCTGCTATGCCTACCTGCCTTCTGTTTTTTCTTTCCCCCGGGGTGAGGAGAAGTTTGTGGTTTTGCTTCCTTTACCTCCTTTACTGTGAAGAATGTCTTATAGGTCTGCACCTGAGATGTTTTTACCTTGCTGCTTCAGCTGTTTCATGGATGTTATGCTGAATGGCGACTCTCTTGGGGTACATGGGTATAATTGAACCTTTTTTTTGGTTTTAGGAAAAACAAAACAAACAAACAGCAACTTGTTTTGATACATGCAACAACAATGGTACCATTTCCCCACCCTATACATTTGTTTAGTGGTGGTTTAAAAATATACACTCTCACTTACTCCCCTCATCACCATATACTATTCTTTTCTCTTCTTCGGGGGGGGGCCCGGTCCCCAATTCCCCTTTATGTGGTCTTTTTGCCCCCCTTACCTAGTCGTAGTGTAAACGGTCCGCTTAGGAAAACCTTTGTATTTCACTATGTGTTTGTCTTGTTTTATTCCTCTTCTTGTGGGATTAAGTATTCCTTGTTTTCTTTAGTCTTTCTATCGTCTTTATATTACGTGCATCCTGATATTTTACGTTAATTTTTATTTTAGATCACCTTATGTTCGTATTAACCAGTAATTTAGCTTCGCATTAATTATTTTTTTTTATATTATT]


>consensus_135#0 GAAGGACAGCAAAAGGCTTGAGATGTGGGACCGCCAAAAGGCAAAGCTTCAGGAGGACAT TGCTGAATGCAAGACAAAGATTACGCAGGTGGACAGGGAACTTGCTGAGATCAACAAGGC AATAAGAAATATGGAGATGAAAATAAGAGAAGACACAAAAGCCAAAGAAGAAAACCTGGC GCTTGCAGAACAGGAGCACGCGAAGCGGGAATCTGCCAAAGCGAATGCTGAACGCCGACT GGAAGAAATACGCCAGAAGACAGAAGTGGAGTCTCGGTGCTTCAAAGATGATATCAAGAG GCTTGAAGATGAACTAGCCCGTCTACAAAAGTCGATGGGTGTTAATCATCCAACTGTTCC CTCAACCCACCCTCCTGGTGTGGCCGATCGAAACTCCACGCGGGCGCCAAAGCAGCCCAC CAACCAAAGGCCATCGCCCGCGTCGAACAAGCAGTCGCAAGCGCCTACCCAGAAGACAAG CCGTCGCAGGGACTGCGTGATCTGCAAGAGGGAGGAGGCGTGCGTGATCCTGCTTCAGTG CGCCCACCAGGTGCTCTGCGTCGGTTGCAACAAGAGGCATGAGGAGAAGGGCGTGGCCCG GTGCCCCTGCTGCAATGCCAAAGTCGAGGAGAGGATCAGGGTTTTTGGCGCCAGCTCCAA CTGAGGGTCACCTGGTGGTGGTGCTGCCGATTGGGTTTTGGTGCTGATGCTGCTCTCTGC TATGCCTACCTGCCTTCTGTTTTTTCTTTCCCCCGGGGTGAGGAGAAGTTTGTGGTTTTG CTTCCTTTACCTCCTTTACTGTGAAGAATGTCTTATAGGTCTGCACCTGAGATGTTTTTA CCTTGCTGCTTCAGCTGTTTCATGGATGTTATGCTGAATGGCGACTCTCTTGGGGTACAT GGGTATAATTGAACCTTTTTTTTGGTTATAGGAAAAACAAACAAACAGCAACTGATTGGA TACATGCAACAACAATGGTACATTTCCCACCCTATACATCTGTCTAGTGGTGGTTTAAAA ATATACACTCTCACTTACTCCCCTCATCACCATATACTATTCTTTTCTCTTCTTCGGGGG GGGGCCCGGTCCCCAATTCCCCTTTATGTGGTCTTTTTGCCCCCCTTACCTAGTCGTAGT GTAAACGGTCCGCTTAGGAAAACCTTTGTATTTCACTATGTGTTTGTCTTGTTTTATTCC TCTTCTTGTGGGATTAAGTATTCCTTGTTTTCTTTAGTCTTTCTATCGTCTTTATATTAC GTGCATCCTGATATTTTACGTTAATTTTTATTTTAGATCACCTTATGTTCGTATTAACCA GTAATTTAGCTTCGCATTAATTATTTTTTTTTATATTATT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)