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Oryza sativa
cluster # 1351 cluster # 1351       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1351#0 length = 1081 sequences # 1  
consensus_1351#1 length = 610 sequences # 1  

consensusID : consensus_1351#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1081
fasta sequence
                              [ATCGCAGCTCACTCCTCTGCTTCCTTCCTCGCTGTTTGCTTCTGGTTTGATTGATCGACGATGGAGCACAAGGACAGGCAGCGGCATGCAGCGGCGGCGGTGGCTAAGCCGCGGCAGCGGTCGGCGTCGTTCCACGGGCGCGGCGAGGCGGAGCAGCGACACTCGCTGCTGAAGCAGCGGCCGCGGACGCAGCCCGACCTGCTTGCCGGCCTCAGGGGGCAGAGCTTCCGGCGAGGCGGCGGCGAGGGGCGGGCGCCGGCGGGGCCGAGCAGGGTGCTGCTGACCGTGGCGGTGCGGCAGAGCATGTGGCCGCTGCACGTGATGGCGCGCGCGGAGTGGAGCGTGGCCGACCTGGTCGCCGCCGCCGTGGAGCTCTACATCCGGGAGGGGCGCCGGCCGCTGCTGCCGTCCGCCGACCCCGCCGCCTTCGGACTCCACTTCTCCCAGTTCAGCTTGCAGAGTTTGAACCCGGAGGAGAAGCTCATGGAGCTCGGCAGCAGGAGCTTCTTCCTCTGCCCCAAGGCCGCCGCCGCCGCCGTGGCTGCCGTCTCGTCGGGCGAAGACACCGGCGGCTTGTCCGGGGAAGACGAGGCCAACTCTGCCAAGAAGCCCAGCGTGTTGGCTCCATGGCTAGGGTTCCTTCACTTCTGGCCGCTGCTGTAGGTTATAGTACTAGTTAATACTGCCATTTGTGTAGGTCACAGTAAGCTGCATGTATCACCTGTTTTTTTTGGATAATGGTATGCAGCATCTGTGAACTATGGTAATCTTAGTTTCTTTTTTCTACTAAATGTATATATACATTAGTGTTTACTAAGTGAAATTATACTGTTACAGTTTTGGAGATCCGATTTGTTGTGGCTCATAATTGGCATACAAAGTCGAATTGTTCATTTGGATGTAGCTGCAAATTGTACAATGCGAACTTAGATTCTGTATGAGATTGAACATATACTGCCCGCATGCAAAAGTCAGACGCTTCAATCTCCTTCTCTGGGGAATCCAATTCTATTTTTCTACAAAACTGTCAATTCTCAGAAGAGTACTTTTATTGGTCCAGAATAGTTATTGGTCCTAATAA]

[+] EMBL AK058851             [ATCGCAGCTCACTCCTCTGCTTCCTTCCTCGCTGTTTGCTTCTGGTTTGATTGATCGACGATGGAGCACAAGGACAGGCAGCGGCATGCAGCGGCGGCGGTGGCTAAGCCGCGGCAGCGGTCGGCGTCGTTCCACGGGCGCGGCGAGGCGGAGCAGCGACACTCGCTGCTGAAGCAGCGGCCGCGGACGCAGCCCGACCTGCTTGCCGGCCTCAGGGGGCAGAGCTTCCGGCGAGGCGGCGGCGAGGGGCGGGCGCCGGCGGGGCCGAGCAGGGTGCTGCTGACCGTGGCGGTGCGGCAGAGCATGTGGCCGCTGCACGTGATGGCGCGCGCGGAGTGGAGCGTGGCCGACCTGGTCGCCGCCGCCGTGGAGCTCTACATCCGGGAGGGGCGCCGGCCGCTGCTGCCGTCCGCCGACCCCGCCGCCTTCGGACTCCACTTCTCCCAGTTCAGCTTGCAGAGTTTGAACCCGGAGGAGAAGCTCATGGAGCTCGGCAGCAGGAGCTTCTTCCTCTGCCCCAAGGCCGCCGCCGCCGCCGTGGCTGCCGTCTCGTCGGGCGAAGACACCGGCGGCTTGTCCGGGGAAGACGAGGCCAACTCTGCCAAGAAGCCCAGCGTGTTGGCTCCATGGCTAGGGTTCCTTCACTTCTGGCCGCTGCTGTAGGTTATAGTACTAGTTAATACTGCCATTTGTGTAGGTCACAGTAAGCTGCATGTATCACCTGTTTTTTTTGGATAATGGTATGCAGCATCTGTGAACTATGGTAATCTTAGTTTCTTTTTTCTACTAAATGTATATATACATTAGTGTTTACTAAGTGAAATTATACTGTTACAGTTTTGGAGATCCGATTTGTTGTGGCTCATAATTGGCATACAAAGTCGAATTGTTCATTTGGATGTAGCTGCAAATTGTACAATGCGAACTTAGATTCTGTATGAGATTGAACATATACTGCCCGCATGCAAAAGTCAGACGCTTCAATCTCCTTCTCTGGGGAATCCAATTCTATTTTTCTACAAAACTGTCAATTCTCAGAAGAGTACTTTTATTGGTCCAGAATAGTTATTGGTCCTAATAA]


>consensus_1351#0 ATCGCAGCTCACTCCTCTGCTTCCTTCCTCGCTGTTTGCTTCTGGTTTGATTGATCGACG ATGGAGCACAAGGACAGGCAGCGGCATGCAGCGGCGGCGGTGGCTAAGCCGCGGCAGCGG TCGGCGTCGTTCCACGGGCGCGGCGAGGCGGAGCAGCGACACTCGCTGCTGAAGCAGCGG CCGCGGACGCAGCCCGACCTGCTTGCCGGCCTCAGGGGGCAGAGCTTCCGGCGAGGCGGC GGCGAGGGGCGGGCGCCGGCGGGGCCGAGCAGGGTGCTGCTGACCGTGGCGGTGCGGCAG AGCATGTGGCCGCTGCACGTGATGGCGCGCGCGGAGTGGAGCGTGGCCGACCTGGTCGCC GCCGCCGTGGAGCTCTACATCCGGGAGGGGCGCCGGCCGCTGCTGCCGTCCGCCGACCCC GCCGCCTTCGGACTCCACTTCTCCCAGTTCAGCTTGCAGAGTTTGAACCCGGAGGAGAAG CTCATGGAGCTCGGCAGCAGGAGCTTCTTCCTCTGCCCCAAGGCCGCCGCCGCCGCCGTG GCTGCCGTCTCGTCGGGCGAAGACACCGGCGGCTTGTCCGGGGAAGACGAGGCCAACTCT GCCAAGAAGCCCAGCGTGTTGGCTCCATGGCTAGGGTTCCTTCACTTCTGGCCGCTGCTG TAGGTTATAGTACTAGTTAATACTGCCATTTGTGTAGGTCACAGTAAGCTGCATGTATCA CCTGTTTTTTTTGGATAATGGTATGCAGCATCTGTGAACTATGGTAATCTTAGTTTCTTT TTTCTACTAAATGTATATATACATTAGTGTTTACTAAGTGAAATTATACTGTTACAGTTT TGGAGATCCGATTTGTTGTGGCTCATAATTGGCATACAAAGTCGAATTGTTCATTTGGAT GTAGCTGCAAATTGTACAATGCGAACTTAGATTCTGTATGAGATTGAACATATACTGCCC GCATGCAAAAGTCAGACGCTTCAATCTCCTTCTCTGGGGAATCCAATTCTATTTTTCTAC AAAACTGTCAATTCTCAGAAGAGTACTTTTATTGGTCCAGAATAGTTATTGGTCCTAATA A



consensusID : consensus_1351#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 610
fasta sequence
                              [CTTCCTCGCTGTTTGCTTCTGGTTTGATTGATCGACGATGGAGCACAAGGACAGGCAGCGGCATGCAGCGGCGGCGGTGGCTAAGCCGCGGCAGCGGTCGGCGTCGTTCCACGGGCGCGGCGAGGCGGAGCAGCGACACTCGCTGCTGAAGCAGCGGCCGCGGACGCAGCCCGACCTGCTTGCCGGCCTCAGGGGGCAGAGCTTCCGGCGAGGCGGCGGCGAGGGGCGGGCGCCGGCGGGGCCGAGCAGGGTGCTGCTGACCGTGGCGGTGCGGCAGAGCATGTGGCCGCTGCACGTGATGGCGCGCGCGGAGTGGAGCGTGGCCCACCTGGTCGCCCCCGCCGTGGAGGTCTACCTCCCGGGAAGGGNGCCCGGCCGCTGCTGTCGTTCCGCCGAACCCCCCCGCCTCCGGATCCACTTCTCCCCAGATCAACTTGCAGAAAACGTGACGCGGGGACGCCTCCCTTCCACTGGCTATAATTTTAACACCTTCCTTGCCGGGGCCCGCGGACGGCAAGAGCTCCTCCCCTGATCCGGAAAGGCTGTCGGGTTTTTTTGTACGAGAGGTTGTACCCGGAGGAGAACTCCTGGAGCTCGCCGCCAGGGCTTC]

[+] EMBL CA754079             [CTTCCTCGCTGTTTGCTTCTGGTTTGATTGATCGACGATGGAGCACAAGGACAGGCAGCGGCATGCAGCGGCGGCGGTGGCTAAGCCGCGGCAGCGGTCGGCGTCGTTCCACGGGCGCGGCGAGGCGGAGCAGCGACACTCGCTGCTGAAGCAGCGGCCGCGGACGCAGCCCGACCTGCTTGCCGGCCTCAGGGGGCAGAGCTTCCGGCGAGGCGGCGGCGAGGGGCGGGCGCCGGCGGGGCCGAGCAGGGTGCTGCTGACCGTGGCGGTGCGGCAGAGCATGTGGCCGCTGCACGTGATGGCGCGCGCGGAGTGGAGCGTGGCCCACCTGGTCGCCCCCGCCGTGGAGGTCTACCTCCCGGGAAGGGNGCCCGGCCGCTGCTGTCGTTCCGCCGAACCCCCCCGCCTCCGGATCCACTTCTCCCCAGATCAACTTGCAGAAAACGTGACGCGGGGACGCCTCCCTTCCACTGGCTATAATTTTAACACCTTCCTTGCCGGGGCCCGCGGACGGCAAGAGCTCCTCCCCTGATCCGGAAAGGCTGTCGGGTTTTTTTGTACGAGAGGTTGTACCCGGAGGAGAACTCCTGGAGCTCGCCGCCAGGGCTTC]


>consensus_1351#1 CTTCCTCGCTGTTTGCTTCTGGTTTGATTGATCGACGATGGAGCACAAGGACAGGCAGCG GCATGCAGCGGCGGCGGTGGCTAAGCCGCGGCAGCGGTCGGCGTCGTTCCACGGGCGCGG CGAGGCGGAGCAGCGACACTCGCTGCTGAAGCAGCGGCCGCGGACGCAGCCCGACCTGCT TGCCGGCCTCAGGGGGCAGAGCTTCCGGCGAGGCGGCGGCGAGGGGCGGGCGCCGGCGGG GCCGAGCAGGGTGCTGCTGACCGTGGCGGTGCGGCAGAGCATGTGGCCGCTGCACGTGAT GGCGCGCGCGGAGTGGAGCGTGGCCCACCTGGTCGCCCCCGCCGTGGAGGTCTACCTCCC GGGAAGGGNGCCCGGCCGCTGCTGTCGTTCCGCCGAACCCCCCCGCCTCCGGATCCACTT CTCCCCAGATCAACTTGCAGAAAACGTGACGCGGGGACGCCTCCCTTCCACTGGCTATAA TTTTAACACCTTCCTTGCCGGGGCCCGCGGACGGCAAGAGCTCCTCCCCTGATCCGGAAA GGCTGTCGGGTTTTTTTGTACGAGAGGTTGTACCCGGAGGAGAACTCCTGGAGCTCGCCG CCAGGGCTTC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1351#0      ATCGCAGCTCACTCCTCTGCTTCCTTCCTCGCTGTTTGCTTCTGGTTTGATTGATCGACG 60
consensus_1351#1      -----------------------CTTCCTCGCTGTTTGCTTCTGGTTTGATTGATCGACG 37
                                             *************************************

consensus_1351#0      ATGGAGCACAAGGACAGGCAGCGGCATGCAGCGGCGGCGGTGGCTAAGCCGCGGCAGCGG 120
consensus_1351#1      ATGGAGCACAAGGACAGGCAGCGGCATGCAGCGGCGGCGGTGGCTAAGCCGCGGCAGCGG 97
                      ************************************************************

consensus_1351#0      TCGGCGTCGTTCCACGGGCGCGGCGAGGCGGAGCAGCGACACTCGCTGCTGAAGCAGCGG 180
consensus_1351#1      TCGGCGTCGTTCCACGGGCGCGGCGAGGCGGAGCAGCGACACTCGCTGCTGAAGCAGCGG 157
                      ************************************************************

consensus_1351#0      CCGCGGACGCAGCCCGACCTGCTTGCCGGCCTCAGGGGGCAGAGCTTCCGGCGAGGCGGC 240
consensus_1351#1      CCGCGGACGCAGCCCGACCTGCTTGCCGGCCTCAGGGGGCAGAGCTTCCGGCGAGGCGGC 217
                      ************************************************************

consensus_1351#0      GGCGAGGGGCGGGCGCCGGCGGGGCCGAGCAGGGTGCTGCTGACCGTGGCGGTGCGGCAG 300
consensus_1351#1      GGCGAGGGGCGGGCGCCGGCGGGGCCGAGCAGGGTGCTGCTGACCGTGGCGGTGCGGCAG 277
                      ************************************************************

consensus_1351#0      AGCATGTGGCCGCTGCACGTGATGGCGCGCGCGGAGTGGAGCGTGGCCGACCTGGTCGCC 360
consensus_1351#1      AGCATGTGGCCGCTGCACGTGATGGCGCGCGCGGAGTGGAGCGTGGCCCACCTGGTCGCC 337
                      ************************************************ ***********

consensus_1351#0      GCCGCCGTGGAGCTCTACATCC-GGGAGGGGCGCC-GGCCGCTGCTGCCGT-CCGCCGA- 416
consensus_1351#1      CCCGCCGTGGAGGTCTACCTCCCGGGAAGGGNGCCCGGCCGCTGCTGTCGTTCCGCCGAA 397
                       *********** ***** *** **** *** *** *********** *** ******* 

consensus_1351#0      CCCCGCCGCCTTCGGACTCCACTTCTCCC-AGTTCAGCTTGCAGAGTTTGAACCCGGAGG 475
consensus_1351#1      CCCCCCCGCCTCCGGA-TCCACTTCTCCCCAGATCAACTTGCAGAAAACGTGACGCGGGG 456
                      **** ****** **** ************ ** *** ********    *   *  * **

consensus_1351#0      AGAAGCTCATGGAGCTCGGCAGCAGGAGCTTCTTCCTCTGCCCCAAGGCCGCCGCCGCCG 535
consensus_1351#1      ACGCCTCCCTTCCACT-GGCTATAATTTTAACACCTTCCTTGCCGGGGCC--CGCGGACG 513
                      *      * *    ** ***   *       *  * **    **  ****  *** * **

consensus_1351#0      CCGTGGCTGCCGTCTCGTCGGGCGAAGACACCGGCGGCTTGTCCGGGGAAGACGAGGCCA 595
consensus_1351#1      GCAAGAGCTCC-TCCCCTGATCCGGAAAGGCTGTCGGGTTTTTTTGT-ACGAGAGGTTGT 571
                       *  *    ** ** * *    ** * *  * * *** ** *   *  * **   *    

consensus_1351#0      ACTCTGCCAAGAAGCCCAGCGTGTTGGCTCCATGGCTAGGGTTCCTTCACTTCTGGCCGC 655
consensus_1351#1      ACCCGGAGGAGAACTCCTGGAGCTCGCCGCCAGGGCTTC--------------------- 610
                      ** * *   ****  ** *    * * * *** ****                       

consensus_1351#0      TGCTGTAGGTTATAGTACTAGTTAATACTGCCATTTGTGTAGGTCACAGTAAGCTGCATG 715
consensus_1351#1      ------------------------------------------------------------
                                                                                  

consensus_1351#0      TATCACCTGTTTTTTTTGGATAATGGTATGCAGCATCTGTGAACTATGGTAATCTTAGTT 775
consensus_1351#1      ------------------------------------------------------------
                                                                                  

consensus_1351#0      TCTTTTTTCTACTAAATGTATATATACATTAGTGTTTACTAAGTGAAATTATACTGTTAC 835
consensus_1351#1      ------------------------------------------------------------
                                                                                  

consensus_1351#0      AGTTTTGGAGATCCGATTTGTTGTGGCTCATAATTGGCATACAAAGTCGAATTGTTCATT 895
consensus_1351#1      ------------------------------------------------------------
                                                                                  

consensus_1351#0      TGGATGTAGCTGCAAATTGTACAATGCGAACTTAGATTCTGTATGAGATTGAACATATAC 955
consensus_1351#1      ------------------------------------------------------------
                                                                                  

consensus_1351#0      TGCCCGCATGCAAAAGTCAGACGCTTCAATCTCCTTCTCTGGGGAATCCAATTCTATTTT 1015
consensus_1351#1      ------------------------------------------------------------
                                                                                  

consensus_1351#0      TCTACAAAACTGTCAATTCTCAGAAGAGTACTTTTATTGGTCCAGAATAGTTATTGGTCC 1075
consensus_1351#1      ------------------------------------------------------------
                                                                                  

consensus_1351#0      TAATAA 1081
consensus_1351#1      ------
                            




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)