cluster # 13512

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Oryza sativa
cluster # 13512 cluster # 13512 Sequences # 13 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_13512#0 length = 1167 sequences # 1
consensus_13512#1 length = 1024 sequences # 10

consensus_13512#2 length = 477 sequences # 1
consensus_13512#3 length = 225 sequences # 1

consensusID : consensus_13512#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1167
fasta sequence

                              [GAGAGAGCCCTCCTCTCCTCTCCTACCCTCTTCTTCCTCCTCCTCCTCCTCGCCTCCCACCAAACCCTAGCACGAGCAGCCCAATCCATCTCCAGCCTCACGAGCTCCAGTTCGGAGCAGCCTCGCGGTGGGACGAGTCGCCAGTTGGGGAGCTCGGAGGAGGTGAGGCCGTGGTTGGGGGTTGGGAAGGGGGGAAGGCCAAGAAATGGCGGAGAAGGAGGAGGGCAAGGTGGCGGCGGAGGGTGGGGCGGAGGCGGAGGCCGACGAGGAGGTGGAGGTCAAGTTCCGCCTCTTCGACGGCTCCGACATCGGGCCCCTCCGCTGCAACGCCGTCGCCACCACCGTCGCCGCCCTCAAGGACCGCGTCGTCGCCGACTGGCCCAAAGATAAAACAATTGTCCCGAAGACTGCTAATGATGTCAAACTGATAAGTGGAGGAAAAATTCTAGAAAACGACAAGAACATTGCGCAGTGCAGAGCACCTTTTGGTGATCTTCCGAGCACTGCTATCACAATGCACGTTGTTGTGCAGCCATCATCAGCCAAATCAAAACCTGGTGAGCTATATTACTTCATAGAAAGTATGTTGGACTGCTTGACATAGTCTAGATTTATAGCTTGTGTTAACAATCATGATAACCAGGGAGTAAATTGTTTCTCTTGCTTACTCTGGATTTGTTCTCTCTGTTTATTATGATTTCACTAATTCATAATTCATATTTTGCCAAATCTGTTTTGGCAAAAGTTGAGTGCAATAGATTTCATTGATTTCCTGAAGTGAACTTTTTCTTAAAATATCACTGAGATGACATTAAATTTGGAACTGTTCGAGATTTCTGTTTAGGAATCAGCGAAGTAAGCTGTCAGCTATCCTGCAATATGTACTACCTCTGGTTATTAATAGTTGATGCCACACAGAGTTGACAGCAGCTGTCTGGCATCAGCTTAATATGACTGGATGGAGTAGTTAAAATAATGACCTTTCCTTCGCTGTTTCAAAGCTGTTACTAGGGCTTCTCCTGCCAGGGCATATGTTTTGTTTTCCGGTTGATTCCCTCTAGTAATCACCACTTTTGGAATTGGCCAAAGGCAACAACAAACTGCCTATACTTGAAATATGCCACTATATCAGATTTGTCAAATATAGCACCATGAACAGTGTTACTG]

[+] EMBL AK061405             [GAGAGAGCCCTCCTCTCCTCTCCTACCCTCTTCTTCCTCCTCCTCCTCCTCGCCTCCCACCAAACCCTAGCACGAGCAGCCCAATCCATCTCCAGCCTCACGAGCTCCAGTTCGGAGCAGCCTCGCGGTGGGACGAGTCGCCAGTTGGGGAGCTCGGAGGAGGTGAGGCCGTGGTTGGGGGTTGGGAAGGGGGGAAGGCCAAGAAATGGCGGAGAAGGAGGAGGGCAAGGTGGCGGCGGAGGGTGGGGCGGAGGCGGAGGCCGACGAGGAGGTGGAGGTCAAGTTCCGCCTCTTCGACGGCTCCGACATCGGGCCCCTCCGCTGCAACGCCGTCGCCACCACCGTCGCCGCCCTCAAGGACCGCGTCGTCGCCGACTGGCCCAAAGATAAAACAATTGTCCCGAAGACTGCTAATGATGTCAAACTGATAAGTGGAGGAAAAATTCTAGAAAACGACAAGAACATTGCGCAGTGCAGAGCACCTTTTGGTGATCTTCCGAGCACTGCTATCACAATGCACGTTGTTGTGCAGCCATCATCAGCCAAATCAAAACCTGGTGAGCTATATTACTTCATAGAAAGTATGTTGGACTGCTTGACATAGTCTAGATTTATAGCTTGTGTTAACAATCATGATAACCAGGGAGTAAATTGTTTCTCTTGCTTACTCTGGATTTGTTCTCTCTGTTTATTATGATTTCACTAATTCATAATTCATATTTTGCCAAATCTGTTTTGGCAAAAGTTGAGTGCAATAGATTTCATTGATTTCCTGAAGTGAACTTTTTCTTAAAATATCACTGAGATGACATTAAATTTGGAACTGTTCGAGATTTCTGTTTAGGAATCAGCGAAGTAAGCTGTCAGCTATCCTGCAATATGTACTACCTCTGGTTATTAATAGTTGATGCCACACAGAGTTGACAGCAGCTGTCTGGCATCAGCTTAATATGACTGGATGGAGTAGTTAAAATAATGACCTTTCCTTCGCTGTTTCAAAGCTGTTACTAGGGCTTCTCCTGCCAGGGCATATGTTTTGTTTTCCGGTTGATTCCCTCTAGTAATCACCACTTTTGGAATTGGCCAAAGGCAACAACAAACTGCCTATACTTGAAATATGCCACTATATCAGATTTGTCAAATATAGCACCATGAACAGTGTTACTG]




>consensus_13512#0
GAGAGAGCCCTCCTCTCCTCTCCTACCCTCTTCTTCCTCCTCCTCCTCCTCGCCTCCCAC
CAAACCCTAGCACGAGCAGCCCAATCCATCTCCAGCCTCACGAGCTCCAGTTCGGAGCAG
CCTCGCGGTGGGACGAGTCGCCAGTTGGGGAGCTCGGAGGAGGTGAGGCCGTGGTTGGGG
GTTGGGAAGGGGGGAAGGCCAAGAAATGGCGGAGAAGGAGGAGGGCAAGGTGGCGGCGGA
GGGTGGGGCGGAGGCGGAGGCCGACGAGGAGGTGGAGGTCAAGTTCCGCCTCTTCGACGG
CTCCGACATCGGGCCCCTCCGCTGCAACGCCGTCGCCACCACCGTCGCCGCCCTCAAGGA
CCGCGTCGTCGCCGACTGGCCCAAAGATAAAACAATTGTCCCGAAGACTGCTAATGATGT
CAAACTGATAAGTGGAGGAAAAATTCTAGAAAACGACAAGAACATTGCGCAGTGCAGAGC
ACCTTTTGGTGATCTTCCGAGCACTGCTATCACAATGCACGTTGTTGTGCAGCCATCATC
AGCCAAATCAAAACCTGGTGAGCTATATTACTTCATAGAAAGTATGTTGGACTGCTTGAC
ATAGTCTAGATTTATAGCTTGTGTTAACAATCATGATAACCAGGGAGTAAATTGTTTCTC
TTGCTTACTCTGGATTTGTTCTCTCTGTTTATTATGATTTCACTAATTCATAATTCATAT
TTTGCCAAATCTGTTTTGGCAAAAGTTGAGTGCAATAGATTTCATTGATTTCCTGAAGTG
AACTTTTTCTTAAAATATCACTGAGATGACATTAAATTTGGAACTGTTCGAGATTTCTGT
TTAGGAATCAGCGAAGTAAGCTGTCAGCTATCCTGCAATATGTACTACCTCTGGTTATTA
ATAGTTGATGCCACACAGAGTTGACAGCAGCTGTCTGGCATCAGCTTAATATGACTGGAT
GGAGTAGTTAAAATAATGACCTTTCCTTCGCTGTTTCAAAGCTGTTACTAGGGCTTCTCC
TGCCAGGGCATATGTTTTGTTTTCCGGTTGATTCCCTCTAGTAATCACCACTTTTGGAAT
TGGCCAAAGGCAACAACAAACTGCCTATACTTGAAATATGCCACTATATCAGATTTGTCA
AATATAGCACCATGAACAGTGTTACTG

consensusID : consensus_13512#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 1024
fasta sequence

                              [AGAGAGAGCCCTCCTCTCCTCTCCTACCCTCTTCTTCCTCCTCCTCCTCCTCGCCTCCCACCAAACCCTAGCACGAGCAGCCCAATCCATCTCCAGCCTCACGAGCTCCAGTTCGGAGCAGCCTCGCGGTGGGACGAGTCGCCAGTTGGGGAGCTCGGAGGAGGTGAGGCCGTGGTTGGGGGTTGGGAAGGGGGGAAGGCCAAGAAATGGCGGAGAAGGAGGAGGGCAAGG-TGGCGGCGGAGGGT-GGGGC-GGAGGCGGA-GGCCGACG-AGGAGG-TGG-AGGTCAAGTT-CCGCC-TCTTCGACGGCTCCGACATCGGGCCCCTCCGCTGCAACGCCGTCGCCACCACCGTCGCCGCCCTCAAGGACCGCGTCGTCGCCGACTGGCCCAAAGATAAAACAATTGTCCCGAAGACTGCTAATGATGT-CAAACTGATAAGTGGAGGAAAAATTCTAGAAAACGACAAGAACATTGCGCAGTGCAGAGCACCTTTTGGTGATCTTCCGAGCACTGCTAT-CACAATGCACGTTGTTGTGCAGCCATCATCAGCCAAATCAAAACCTGACAAGAAGACCAACAAGTTGCCAAAGACCACTCGCTGCTCATGTACCATACTATGAAGGTTCAGTGTCAACTCCATCGACAATAATTTGTATGTCCGTGAAAATTATGCAGAGAGACAACGAATGGAGAGAAGATTGAAGAAAATCTGGTGCCAGAGGAGTCCGATGTGTTGTGAGATTGTATTGTAATTGTAAGCTTAGATACTACAGAGAGTTCGTCCCTCTGCGGCTAGGGAAAAATAGATGTCGTTCGGTCGGTTGCTTGTCTGTTTTACCCAACAAAATGTTTCTATATGATGTACAATATACACATACATGCTGTTCTGGAGGAAGAAGTTGGTTGTTTTTCCGTGTCAAGTTCAGTTCAGTTCAGAATTTTGAGGTTTCTTGGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK059881             [AGAGAGAGCCCTCCTCTCCTCTCCTACCCTCTTCTTCCTCCTCCTCCTCCTCGCCTCCCACCAAACCCTAGCACGAGCAGCCCAATCCATCTCCAGCCTCACGAGCTCCAGTTCGGAGCAGCCTCGCGGTGGGACGAGTCGCCAGTTGGGGAGCTCGGAGGAGGTGAGGCCGTGGTTGGGGGTTGGGAAGGGGGGAAGGCCAAGAAATGGCGGAGAAGGAGGAGGGCAAGG TGGCGGCGGAGGGT GGGGC GGAGGCGGA GGCCGACG AGGAGG TGG AGGTCAAGTT CCGCC TCTTCGACGGCTCCGACATCGGGCCCCTCCGCTGCAACGCCGTCGCCACCACCGTCGCCGCCCTCAAGGACCGCGTCGTCGCCGACTGGCCCAAAGATAAAACAATTGTCCCGAAGACTGCTAATGATGT CAAACTGATAAGTGGAGGAAAAATTCTAGAAAACGACAAGAACATTGCGCAGTGCAGAGCACCTTTTGGTGATCTTCCGAGCACTGCTAT CACAATGCACGTTGTTGTGCAGCCATCATCAGCCAAATCAAAACCTGACAAGAAGACCAACAAGTTGCCAAAGACCACTCGCTGCTCATGTACCATACTATGAAGGTTCAGTGTCAACTCCATCGACAATAATTTGTATGTCCGTGAAAATTATGCAGAGAGACAACGAATGGAGAGAAGATTGAAGAAAATCTGGTGCCAGAGGAGTCCGATGTGTTGTGAGATTGTATTGTAATTGTAAGCTTAGATACTACAGAGAGTTCGTCCCTCTGCGGCTAGGGAAAAATAGATGTCGTTCGGTCGGTTGCTTGTCTGTTTTACCCAACAAAATGTTTCTATATGATGTACAATATACACATACATGCTGTTCTGGAGGAAGAAGTTGGTTGTTTTTCCGTGTCAAGTTCAGTTCAGTTCAGAATTTTGAGG                                                                                    ]
[+] EMBL AK099168             [AGAGAGAGCCCTCCTCTCCTCTCCTACCCTCTTCTTCCTCCTCCTCCTCCTCGCCTCCCACCAAACCCTAGCACGAGCAGCCCAATCCATCTCCAGCCTCACGAGCTCCAGTTCGGAGCAGCCTCGCGGTGGGACGAGTCGCCAGTTGGGGAGCTCGGAGGAGGTGAGGCCGTGGTTGGGGGTTGGGAAGGGGGGAAGGCCAAGAAATGGCGGAGAAGGAGGAGGGCAAGG TGGCGGCGGAGGGT GGGGC GGAGGCGGA GGCCGACG AGGAGG TGG AGGTCAAGTT CCGCC TCTTCGACGGCTCCGACATCGGGCCCCTCCGCTGCAACGCCGTCGCCACCACCGTCGCCGCCCTCAAGGACCGCGTCGTCGCCGACTGGCCCAAAGATAAAACAATTGTCCCGAAGACTGCTAATGATGT CAAACTGATAAGTGGAGGAAAAATTCTAGAAAACGACAAGAACATTGCGCAGTGCAGAGCACCTTTTGGTGATCTTCCGAGCACTGCTAT CACAATGCACGTTGTTGTGCAGCCATCATCAGCCAAATCAAAACCTGACAAGAAGACCAACAAGTTGCCAAAGACCACTCGCTGCTCATGTACCATACTATGAAGGTTCAGTGTCAACTCCATCGACAATAATTTGTATGTCCGTGAAAATTATGCAGAGAGACAACGAATGGAGAGAAGATTGAAGAAAATCTGGTGCCAGAGGAGTCCGATGTGTTGTGAGATTGTATTGTAATTGTAAGCTTAGATACTACAGAGAGTTCGTCCCTCTGCGGCTAGGGAAAAATAGATGTCGTTCGGTCGGTTGCTTGTCTGTTTTACCCAACAAAATGTTTCTATATGATGTACAATATACACATACATGCTGTTCTGGAGGAAGAAGTTGGTTGTT                                                                                                                          ]
[+] EMBL AK104201             [AGAGAGAGCCCTCCTCTCCTCTCCTACCCTCTTCT   TCCTCCTCCTCCTCGCCTCCCACCAAACCCTAGCACGAGCAGCCCAATCCATCTCCAGCCTCACGAGCTCCAGTTCGGAGCAGCCTCGCGGTGGGACGAGTCGCCAGTTGGGGAGCTCGGAGGAGGTGAGGCCGTGGTTGGGGGTTGGGAAGGGGGGAAGGCCAAGAAATGGCGGAGAAGGAGGAGGGCAAGG TGGCGGCGGAGGGT GGGGC GGAGGCGGA GGCCGACG AGGAGG TGG AGGTCAAGTT CCGCC TCTTCGACGGCTCCGACATCGGGCCCCTCCGCTGCAACGCCGTCGCCACCACCGTCGCCGCCCTCAAGGACCGCGTCGTCGCCGACTGGCCCAAAGATAAAACAATTGTCCCGAAGACTGCTAATGATGT CAAACTGATAAGTGGAGGAAAAATTCTAGAAAACGACAAGAACATTGCGCAGTGCAGAGCACCTTTTGGTGATCTTCCGAGCACTGCTAT CACAATGCACGTTGTTGTGCAGCCATCATCAGCCAAATCAAAACCTGACAAGAAGACCAACAAGTTGCCAAAGACCACTCGCTGCTCATGTACCATACTATGAAGGTTCAGTGTCAACTCCATCGACAATAATTTGTATGTCCGTGAAAATTATGCAGAGAGACAACGAATGGAGAGAAGATTGAAGAAAATCTGGTGCCAGAGGAGTCCGATGTGTTGTGAGATTGTATTGTAATTGTAAGCTTAGATACTACAGAGAGTTCGTCCCTCTGCGGCTAGGGAAAAATAGATGTCGTTCGGTCGGTTGCTTGTCTGTTTTACCCAACAAAATGTTTCTATATGATGTACAATATACACATACATGCTGTTCTGGAGGAAGAAGTTG                                                                                                                                ]
[+] EMBL OSS10726A            [          CTCCTCTCCTCTCCTACCCTCTTCTTCCTCCTCCTCCTCCTCGCCTCCCACCAAACCCTAGCACGAGCAGCCCAATCCATCTCCAGCCTCACGAGCTCCAGTTCGGAGCAGCCTCGCGGTGGGACGAGTCGCCAGTTGGGGAGCTCGGAGGAGGTGAGGCCGTGGTTGGGGGTTGGGAAGGGGGGAAGGCCAAGAAATGGCGGAGAAGGAGGAGGGCAAGG TGGCGGCGGAGGGT GGGGC GGAGGCGGA GGCC ACG AGGAGGTTGA AGGTCAAGTT CCGCC TCTTCGACGGCTCCGACATC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL OSS11087A            [          CTCCTCTCCTCTCCTACCCTCTTCTTCCTCCTCCTCCTCCTCGCCTCCCACCAAACCCTAGCACGAGCAGCCCAATCCATCTCCAGACTCACGAGCTCCAGTTCGGAGCAGCCTCGCGGTGGGACGAGTCGCCAGTTGGGGAGCTCGGAGGAGGTGAGGNCGTGGTTGGGGGTTGGGAAGGGGGGAAGGCCAAGAAATGGCGGAGAAGGAGGAGGGCAAGGTTGGCGGCGGAGGGT NGGGC GGAGGCGGANGGNCGACGAAGGAGGTTGGAAGGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CF313680             [                                                                                                                                                                                                                GGCGGAGAAGGAGGAGGGCAAGG TGGCGGCGGAGGGTGGGGGCNNGAGGCGGA TGCCGACG AGGAGG TGG AGGTCAAGTT CCGCC TCTTCGACGGCTCCGACATCGGGCCCCTCCGCTGCAACGCCGTCGCCACCACCGTCGCCGCCCTCAAGGACCGCGTCGTCGCCGACTGGCCCAAAGATAAAACAATTGTCCCGAAGACTGCTAATGATGT CAAACTGATAAGTGGAGG  AAATTCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CA767106             [                                                                                                                                                                                                                                                           C GGAGGCGGA GGCCGACG AGGAGG TGG AGGTCAAGTT CCGCC TCTTCGACGGCTCCGACATCGGGCCCCTCCGCTGCAACGCCGTCGCCACCACCGTCGCCGCCCTCAAGGACCGCGTCGTCGCGGACTGGCCCAAAGATAAAACAATTGTCCCGAAGACTGCTAATGATGT CAAACTGATAAGTGGAGGAAAAATTCTAGAAAACGACAAGAACATTGCGCAGTGCAGAGCACCTTTTGGTGATCTTCCGAGCACTGCTAT CACAATGCACGTTGTTGTGCAGCCATCATCAGCCAAATCAAAACCTGACAAGAAGACCAACAAGTTGCCAAAGACCACTCGCTGCTCATGTACCATACTATGAAGGTTCAGTGTCAACTCCATCGACAATAATTTGTATGTCCGT                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL AU032548             [                                                                                                                                                                                                                                                                                   AGT TGG AGGTCAAGTTCCCGCCTTTTTCGACGGCTCCGACATCGGGCCCCTCCGCTGCAACGCCTTCGCCACCACCGTCGCCGCCCTCCAGGACCGCGTCGTCGCCGACTGGCCCAAAGATAAAACAATTGTCCCGAAGACTGCTAATGATGTCCAAACTGATAAGTGGAGGAAAAATTCTAGAAAACGACAAGAACATTGCGCAGTGCAGAGCACCTTTTGGTGATCTTCCGAGCACTGCTATCCACAATGCACGTTGTTGTGCAGCCATCATCAGCCAAATCAAAACCTGACAAGAAGACCAACAAGTTGCCAAAGACCACTCGCTGCTCATGTACCATACTATGAAGGTTCAGTGTCAACTCCATCGACAATAATTTGTATGTCCGTGAAAATTATGCAGAGAGACAACGAATGGAGAGAAGATTGAAGAAAATCTGGTGCCAGAGGAGTCCGATGTGTTGTGAGATTGTATTGTAATTGTAAGCTTAGATACTACAGAGAGTTCGTCCCTCTGCGGCTAGGGAAAAATAGATGTCGTTCGGTCGGTTGCTTGTCTGTTTTACCCAACAAAATGTTTCTATATGATGTACAATATACACATACATGCTGTTCTGGAGGAAGAAGTTGGTTGTTTTTCCGTGTCAAaaaaaa                                                                                                        ]
[-] EMBL CF313681             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CAGTGCAGAGCACCTTTTGGT ATCTTCCGAGCACTGCTAT CACAATGCACGTTGTTGTGCAGCCATCATCAGCCAAATCAAAACCTGACAAGAAGACCAACAAGTTGCCAAAGACCACTCGCTGCTCATGTACCATACTATGAAGGTTCAGTGTCAACTCCATCGACAATAATTTGTATGTCCGTGAAAATTATGCAGAGAGACAACGAATGGAGAGAAGATTGAAGAAAATCTGGTGCCAGAGGAGTCCGATGTGTTGTGAGATTGTATTGTAATTGTAAGCTTAGATACTACAGAGAGTTCGTCCCTCTGCGGCTAGGGAAAAATAGATGTCGTTCGGTCGGTTGCTTGTCTGTTTTACCCAACAAAATGTTTCTATATGATGTACAATATACACATACATGCTGTTCTGGAGGAAGAAGTTGGTTGTTTTTCCGTGTCAAaaaaaaa                                                                                                       ]
[+] EMBL CF318652             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TTTTACCCAACAAAATGTTTCTATATGATGTACAATATACACATACATGCTGTTCTGGAGGAAGAAGTTGGTTGTTTTTCCGTGTCAAGTTCAGTTCAGTTCAGAATTTTGAGGTTTCTTGGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_13512#1
AGAGAGAGCCCTCCTCTCCTCTCCTACCCTCTTCTTCCTCCTCCTCCTCCTCGCCTCCCA
CCAAACCCTAGCACGAGCAGCCCAATCCATCTCCAGCCTCACGAGCTCCAGTTCGGAGCA
GCCTCGCGGTGGGACGAGTCGCCAGTTGGGGAGCTCGGAGGAGGTGAGGCCGTGGTTGGG
GGTTGGGAAGGGGGGAAGGCCAAGAAATGGCGGAGAAGGAGGAGGGCAAGGTGGCGGCGG
AGGGTGGGGCGGAGGCGGAGGCCGACGAGGAGGTGGAGGTCAAGTTCCGCCTCTTCGACG
GCTCCGACATCGGGCCCCTCCGCTGCAACGCCGTCGCCACCACCGTCGCCGCCCTCAAGG
ACCGCGTCGTCGCCGACTGGCCCAAAGATAAAACAATTGTCCCGAAGACTGCTAATGATG
TCAAACTGATAAGTGGAGGAAAAATTCTAGAAAACGACAAGAACATTGCGCAGTGCAGAG
CACCTTTTGGTGATCTTCCGAGCACTGCTATCACAATGCACGTTGTTGTGCAGCCATCAT
CAGCCAAATCAAAACCTGACAAGAAGACCAACAAGTTGCCAAAGACCACTCGCTGCTCAT
GTACCATACTATGAAGGTTCAGTGTCAACTCCATCGACAATAATTTGTATGTCCGTGAAA
ATTATGCAGAGAGACAACGAATGGAGAGAAGATTGAAGAAAATCTGGTGCCAGAGGAGTC
CGATGTGTTGTGAGATTGTATTGTAATTGTAAGCTTAGATACTACAGAGAGTTCGTCCCT
CTGCGGCTAGGGAAAAATAGATGTCGTTCGGTCGGTTGCTTGTCTGTTTTACCCAACAAA
ATGTTTCTATATGATGTACAATATACACATACATGCTGTTCTGGAGGAAGAAGTTGGTTG
TTTTTCCGTGTCAAGTTCAGTTCAGTTCAGAATTTTGAGGTTTCTTGGTGAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAA

consensusID : consensus_13512#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 477
fasta sequence

                              [AGTGGAGGAAAATTCTAGAACCGACAAGAACTGTGCCCAGTCAGAGCACCTTTGGGTGATCTTCCGAGCACGTGCTATCACAAGGCACGTTGTTGCCAGCCATCATCAGCCAATATCAAACCTGACAAGAAGACCCAAACCAGAGTGTGCCCAAAAGACCCACCTCGCTGCTCATGTAACCATACTATGAAGGTTCAGTGTCAACTCCATTCGACAATAATTTGTATGTCCGTGAAAATTATGCAGAGAGACGACGAATGGAGAGAAGATTGAAGAAAATCGGGCCCAGAGGAGTCCGATGTGTTGTGAGATGTATGGTAATGGTAAGCTTAGATACTACAGAGAGTTCTCCCTCTCCGGTTAGGGAAAAATAGATGTCGTTCAGTCGGTGCTGTCGTTTTACCCACCAAAGGTTTCTATAGGAGGCCAATATACACATACATCCTGTTCTGGAGGAAGAAGTGGGTGGTTTAAAAA]

[+] EMBL BI807986             [AGTGGAGGAAAATTCTAGAACCGACAAGAACTGTGCCCAGTCAGAGCACCTTTGGGTGATCTTCCGAGCACGTGCTATCACAAGGCACGTTGTTGCCAGCCATCATCAGCCAATATCAAACCTGACAAGAAGACCCAAACCAGAGTGTGCCCAAAAGACCCACCTCGCTGCTCATGTAACCATACTATGAAGGTTCAGTGTCAACTCCATTCGACAATAATTTGTATGTCCGTGAAAATTATGCAGAGAGACGACGAATGGAGAGAAGATTGAAGAAAATCGGGCCCAGAGGAGTCCGATGTGTTGTGAGATGTATGGTAATGGTAAGCTTAGATACTACAGAGAGTTCTCCCTCTCCGGTTAGGGAAAAATAGATGTCGTTCAGTCGGTGCTGTCGTTTTACCCACCAAAGGTTTCTATAGGAGGCCAATATACACATACATCCTGTTCTGGAGGAAGAAGTGGGTGGTTTAAAAA]




>consensus_13512#2
AGTGGAGGAAAATTCTAGAACCGACAAGAACTGTGCCCAGTCAGAGCACCTTTGGGTGAT
CTTCCGAGCACGTGCTATCACAAGGCACGTTGTTGCCAGCCATCATCAGCCAATATCAAA
CCTGACAAGAAGACCCAAACCAGAGTGTGCCCAAAAGACCCACCTCGCTGCTCATGTAAC
CATACTATGAAGGTTCAGTGTCAACTCCATTCGACAATAATTTGTATGTCCGTGAAAATT
ATGCAGAGAGACGACGAATGGAGAGAAGATTGAAGAAAATCGGGCCCAGAGGAGTCCGAT
GTGTTGTGAGATGTATGGTAATGGTAAGCTTAGATACTACAGAGAGTTCTCCCTCTCCGG
TTAGGGAAAAATAGATGTCGTTCAGTCGGTGCTGTCGTTTTACCCACCAAAGGTTTCTAT
AGGAGGCCAATATACACATACATCCTGTTCTGGAGGAAGAAGTGGGTGGTTTAAAAA

consensusID : consensus_13512#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 225
fasta sequence

                              [NTCCTCTNCTNTNNTACCCTCTTNNGCCTGCTNCTCCTGCTGGGCTCCCACCAAACCNTAGCANGAGNAGCCNAATCCATCTCCAGNCTTACGAGCTCCAGTTCGGAGCAGCCTCGCGGTGGGACGAGTCGCCAGTTGGGGAGCTCGGAGGAGGTGAGGCCGTGGTTNGGGGTTGGGAAGGGGGNAAGGCCAAGAAATGGCGGAGAAGGAGGAGGGCAAGGTTGN]

[+] EMBL OSS10769A            [NTCCTCTNCTNTNNTACCCTCTTNNGCCTGCTNCTCCTGCTGGGCTCCCACCAAACCNTAGCANGAGNAGCCNAATCCATCTCCAGNCTTACGAGCTCCAGTTCGGAGCAGCCTCGCGGTGGGACGAGTCGCCAGTTGGGGAGCTCGGAGGAGGTGAGGCCGTGGTTNGGGGTTGGGAAGGGGGNAAGGCCAAGAAATGGCGGAGAAGGAGGAGGGCAAGGTTGN]




>consensus_13512#3
NTCCTCTNCTNTNNTACCCTCTTNNGCCTGCTNCTCCTGCTGGGCTCCCACCAAACCNTA
GCANGAGNAGCCNAATCCATCTCCAGNCTTACGAGCTCCAGTTCGGAGCAGCCTCGCGGT
GGGACGAGTCGCCAGTTGGGGAGCTCGGAGGAGGTGAGGCCGTGGTTNGGGGTTGGGAAG
GGGGNAAGGCCAAGAAATGGCGGAGAAGGAGGAGGGCAAGGTTGN

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13512#0      -----------------------GAGAGAGCCCTCCTCTCCTCTCCTACCCTCTTCTTCC 37
consensus_13512#3      --------------------------------NTCCTCTNCTNTNNTACCCTCTTNNGCC 28
consensus_13512#1      ----------------------AGAGAGAGCCCTCCTCTCCTCTCCTACCCTCTTCTTCC 38
consensus_13512#2      AGTGGAGGAAAATTCTAGAACCGACAAGAACTGTGCCCAGTCAGAGCACCTTTGGGTGAT 60
                                                        * * *         *** *        

consensus_13512#0      TCCTCCTCCTCCTCGCCTCCCACCAAACCCTAGCACGAGCAGCC--CAATCCATCTCCAG 95
consensus_13512#3      TGCTNCTCCTGCTGGGCTCCCACCAAACCNTAGCANGAGNAGCC--NAATCCATCTCCAG 86
consensus_13512#1      TCCTCCTCCTCCTCGCCTCCCACCAAACCCTAGCACGAGCAGCC--CAATCCATCTCCAG 96
consensus_13512#2      CTTCCGAGCACGTGCTATCACAAGGCACGTTGTTGCCAGCCATCATCAGCCAATATCAAA 120
                               *   *    ** **    **  *      **    *   *  * ** ** * 

consensus_13512#0      CCTCACGAGC---TCCAGTTCGGAGCAGCCTCGCGGTGGGACGAGTCGCCAGTTGGGGAG 152
consensus_13512#3      NCTTACGAGC---TCCAGTTCGGAGCAGCCTCGCGGTGGGACGAGTCGCCAGTTGGGGAG 143
consensus_13512#1      CCTCACGAGC---TCCAGTTCGGAGCAGCCTCGCGGTGGGACGAGTCGCCAGTTGGGGAG 153
consensus_13512#2      CCTGACAAGAAGACCCAAACCAGAGTGTGCCCA-AAAGACCCACCTCGCTGCTCATGTAA 179
                        ** ** **     ***   * ***    * *     *   *   ****   *   * * 

consensus_13512#0      CT---CGGAGGAGGTGAGGCCGTGGTTGGGGGTTGGGA-AGGGGGGAAGGCCAAGAAA-T 207
consensus_13512#3      CT---CGGAGGAGGTGAGGCCGTGGTTNGGGGTTGGGA-AGGGGGNAAGGCCAAGAAA-T 198
consensus_13512#1      CT---CGGAGGAGGTGAGGCCGTGGTTGGGGGTTGGGA-AGGGGGGAAGGCCAAGAAA-T 208
consensus_13512#2      CCATACTATGAAGGTTCAGTGTCAACTCCATTCGACAATAATTTGTATGTCCGTGAAAAT 239
                       *    *   * ****   *       *          * *    * * * **  **** *

consensus_13512#0      GGCGGAGAAGGAGGAGGGCAAGGTGGCGGCGGAGGGTGGGGCGGAGGCGGAGGCCGACGA 267
consensus_13512#3      GGCGGAGAAGGAGGAGGGCAAGGTTGN--------------------------------- 225
consensus_13512#1      GGCGGAGAAGGAGGAGGGCAAGGTGGCGGCGGAGGGTGGGGCGGAGGCGGAGGCCGACGA 268
consensus_13512#2      TATGCAGAGAGACGACGAATGGAGAGAAGATTGAAGAAAATCGGGCCCAGAGGAGTCCGA 299
                          * ***  ** ** *    *   *                                  

consensus_13512#0      GGAGGTGGAGGTCAAGTTCCGCCTCTTCGAC-GGCTCCGACATCGGGCCCCTCCGCTGCA 326
consensus_13512#3      ------------------------------------------------------------
consensus_13512#1      GGAGGTGGAGGTCAAGTTCCGCCTCTTCGAC-GGCTCCGACATCGGGCCCCTCCGCTGCA 327
consensus_13512#2      TGTGTTGTGAGATGTATGGTAATGGTAAGCTTAGATACTACAGAGAGTTCTCCCTCTCCG 359
                                                                                   

consensus_13512#0      ACGCCGTCGCCACCACCGTCGC-CGCCCTCAAGGACCGCGTCGTCGCCGACTGGCCCAAA 385
consensus_13512#3      ------------------------------------------------------------
consensus_13512#1      ACGCCGTCGCCACCACCGTCGC-CGCCCTCAAGGACCGCGTCGTCGCCGACTGGCCCAAA 386
consensus_13512#2      GTTAGGGAAAAATAGATGTCGTTCAGTCGGTGCTGTCGTTTTACCCACCAAAGGTTTCTA 419
                                                                                   

consensus_13512#0      GATAAAACAATTGTCCCGAAGACTGCTAATGATGTCAAACTGATAAGTGGAGGAAAAATT 445
consensus_13512#3      ------------------------------------------------------------
consensus_13512#1      GATAAAACAATTGTCCCGAAGACTGCTAATGATGTCAAACTGATAAGTGGAGGAAAAATT 446
consensus_13512#2      TAGGAGGCCAATATACACATACATCCTGTTCTGGAGGAAGAAGTGGGTGGTTTAAAAA-- 477
                                                                                   

consensus_13512#0      CTAGAAAACGACAAGAACATTGCGCAGTGCAGAGCACCTTTTGGTGATCTTCCGAGCACT 505
consensus_13512#3      ------------------------------------------------------------
consensus_13512#1      CTAGAAAACGACAAGAACATTGCGCAGTGCAGAGCACCTTTTGGTGATCTTCCGAGCACT 506
consensus_13512#2      ------------------------------------------------------------
                                                                                   

consensus_13512#0      GCTATCACAATGCACGTTGTTGTGCAGCCATCATCAGCCAAATCAAAACCTGGTGAGCTA 565
consensus_13512#3      ------------------------------------------------------------
consensus_13512#1      GCTATCACAATGCACGTTGTTGTGCAGCCATCATCAGCCAAATCAAAACCTGACAAGAAG 566
consensus_13512#2      ------------------------------------------------------------
                                                                                   

consensus_13512#0      TATTACTTCATAGAAAGTATGTTGGACTGCTTGACATAGTCTAGATTTATAGCTTGTGTT 625
consensus_13512#3      ------------------------------------------------------------
consensus_13512#1      ACCAACAAGTTGCCAAAGACCACTCGCTGCT---CATGTACCATACTATGAAGGTTCAGT 623
consensus_13512#2      ------------------------------------------------------------
                                                                                   

consensus_13512#0      AACAATCATGATAACCAGGGAGTAAATTGTTTCTCT-TGCTTACTCTGGATTTGTTCTCT 684
consensus_13512#3      ------------------------------------------------------------
consensus_13512#1      GTCAACTCCATCGAC-----AATAATTTGTATGTCCGTGAAAATTATGCAGAGAGACAAC 678
consensus_13512#2      ------------------------------------------------------------
                                                                                   

consensus_13512#0      CTGTTTATTATGATTTCACTAATTCATAATTCATATTTTGCCAAATCTGTTTTGGCAAAA 744
consensus_13512#3      ------------------------------------------------------------
consensus_13512#1      GAATGGAGAGAAGATTGAAGAAAATCTGGTGCCAGAGGAGTCCGATGTGTTGTGAGATTG 738
consensus_13512#2      ------------------------------------------------------------
                                                                                   

consensus_13512#0      GTTGAGTGCAATAGATTTCATTGATTTCCTGAAGTGAACTTTTTCTTAAAATATCACTG- 803
consensus_13512#3      ------------------------------------------------------------
consensus_13512#1      TATTGTAATTGTAAGCTTAGATACTACAGAGAGTTCGTCCCTCTGCGGCTAGGGAAAAAT 798
consensus_13512#2      ------------------------------------------------------------
                                                                                   

consensus_13512#0      AGATGACATTAAATTTGGAACTGTTCGAGATTTCTGTTTAGGAATCAGCGAAGTAAGCTG 863
consensus_13512#3      ------------------------------------------------------------
consensus_13512#1      AGATGTCGTTCGGTCGGTTGCTTGTCTGTTTTACCCAACAAAATGTTTCTATATGATGTA 858
consensus_13512#2      ------------------------------------------------------------
                                                                                   

consensus_13512#0      TCAGCTATCCTGCAATATGTACTACCTCTGGTTATTAATAGTTGATGCCACACAGAGTTG 923
consensus_13512#3      ------------------------------------------------------------
consensus_13512#1      CAATATACAC----ATACATGCTGT-TCTGGAGGAAGAAGTTGGTTGTTTTTCCGTGTCA 913
consensus_13512#2      ------------------------------------------------------------
                                                                                   

consensus_13512#0      ACAGCAGCTGTCTGGCATCAGCTTAATATGACTGGATGGAGTAGTTAAAATAATGACCTT 983
consensus_13512#3      ------------------------------------------------------------
consensus_13512#1      AGTTCAGTTCAGTT-CAGAATTTTGAGGTTTCTTGGTGAAAAAAAAAAAAAAAAAAAAAA 972
consensus_13512#2      ------------------------------------------------------------
                                                                                   

consensus_13512#0      TCCTTCGCTGTTTCAAAGCTGTTACTAGGGCTTCTCCTGCCAGGGCATATGTTTTGTTTT 1043
consensus_13512#3      ------------------------------------------------------------
consensus_13512#1      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-------- 1024
consensus_13512#2      ------------------------------------------------------------
                                                                                   

consensus_13512#0      CCGGTTGATTCCCTCTAGTAATCACCACTTTTGGAATTGGCCAAAGGCAACAACAAACTG 1103
consensus_13512#3      ------------------------------------------------------------
consensus_13512#1      ------------------------------------------------------------
consensus_13512#2      ------------------------------------------------------------
                                                                                   

consensus_13512#0      CCTATACTTGAAATATGCCACTATATCAGATTTGTCAAATATAGCACCATGAACAGTGTT 1163
consensus_13512#3      ------------------------------------------------------------
consensus_13512#1      ------------------------------------------------------------
consensus_13512#2      ------------------------------------------------------------
                                                                                   

consensus_13512#0      ACTG 1167
consensus_13512#3      ----
consensus_13512#1      ----
consensus_13512#2      ----