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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13518#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 2242 fasta sequence
[ACCAACCCCATCCCTAATCACCACCACCCCCCCATCCCACCATCGAACCGCCACCAAAAAAAGCCGAAGCTCGCTCGCCGCCGCCGCCGCCGCCGGGGACTTCGCCGGAGGGAGGAGAAGCCAACCCGCCCGCCCGCGCGCGCGTACGTACGAGGCCTGCTCCTTCCGTCGGAAGGGAAGCATCGGGATGGCGTCGATTTCGCCGACGTCTTCATCGGTCGCCGCCCTCCGCGGCCACCCGGTGCAGTTCGTGAAAGGCGGTGCAGTCTCCAAGGAAGCAAAGGGATCAATTTCCTTCTCACCCGTTGCGAATTCAAATAATGCCAATGTGAAATTTACGGGCTTGAGGGTAGCAGCATCATTGAAAAGGGATGGTGCTTTTCCAGGCGACGGTTACTCAGGGAATGATAACACGGTGTTACCAAAGAGCACTTCTGTTCGTGGCCAGGACTATCCAACTGCTGACTCTGTACTCCCAACGGAATCCATCATCGTGCCAGAAATCAGTAATGCTGGTTTGAAATGTGTTGCGGACATGTTCTCAGATGAGGACAAAGACACTGAACAAGATTTGGATAGCCCAACTGAGGGCTTCTCGTCTATTTCCGAGGCCATCAAAGATATTCAACAAGGAAAACTTGTGATTGTTGTTGACGATGAATCAAGAGAAAATGAGGGAGATCTTATAATGGCTGCTTCTTTGGTTACCCCAGAGGCCATGGCGTTTGTTGTAAGATATGGCACAGGAATAGTGTGTGTTAGCATGAAAGAAGAGGATCTTGAAAGATTGAACCTTCCTTTGATGGTTGCAACAAAGGAAAATGAGGAGAAGCTCTGTACTGCATTCACTGTTACAGTGGATGCTAAAGAGGGAACAACAACTGGGGTATCTGCAAAGGATAGGGCAAAGACAGTTATGACTCTTGCATCCCCTGACTCTAAGCCTGAAGACTTCAATCGGCCTGGTCATATTTTCCCTCTGAAATACAGAGAGGGTGGTGTTCTGAAACGAGCTGGACATACTGAAGCATCTGTAGATCTTGCTATGTTAGCTGGGTTACCTCCTGCTGCGGTCTTATGTGAGATTGTGGATGAGGATGGGTCCATGGCTCGCCTACCAAAGCTGCGCGT-GTTTGCTGAAAGGGAGAATTTGAAGATTGTATCCATTGCTGACTTGATTAGATATAGGAGAAAAAGAGACAGGCTAGTTGAACGTTCATCTGTTGCACGCTTACCTTTGAGATGGGGTAATGTCCGCGCTTACTGCTACAGATCTGTTATTGATGGGATAGAGCATATTGCAATGGTGAAAGGGGAGA-TTGGAGATGGTCAAGGCGTTTTAGTGAGGGTGCACTCCGAATGCCTCACAGGGGACATTTTTGGATCAGCAAGATGTGATTGTGGTGATCAGCTTGCCATGGCAATGGAGATGATTGAGAAGGCTGGAAGGGGTGTACTAGTTTATCTTCGTGGACATGAAGGGAGGGGTATTGGTCTCGGTCACAAGCTCCGTGCTTATAACCTGCAAGATGACGGGCGCGACACTGTGGAGGCTAATGAAGACCTAGGACTGCCTGTGGATTCACGGGAATATGGCATTGGTGCACAGATATTACGTGATCTGGGGGTCCGTTCAATGAAGTTGATGACTAATAACCCAGCAAAGTATGGTGGTCTCAAGGGTTATGGATTGAGCATTGTGGGCAGGGTTCCCTTGGTAACTCCAATCACCTCAGAGAATCGGAGATACCTGGAAACAAAGAGAACAAAGATGGGGCATGTATATGGATTGGCCAATGGCCAAGCTAGCCATCAGACGGGCAGCAATGGTGCCAAAGGGGAGCATTAGGCCAATCGGACTCAGGTTCACATTCTAATCCACGACAATCTTATGTGATGGAGTTTGTCA-AATTATGCTACAACATATGTTCGTGGTGAACCAATTTTTTTTTAGCTGACAGTAGGTTGAAAGATGGGCGTAATAAAAGTATCCCTTTATTTGTTGTAATCCACAGCCACACAACTGGGTTATTACTGTAAATATATACACACACATAAACT-GCTCCCTAGCGGGTACAGACTCCAGCCTTACCTG-AATTG-AGAAGACTGGCGATAAAAATATCGACTGAGATCCAAGGCAATACTAGTATGAATCTAACTCCCAATATTGAAAGAATTTTTGTTCTGGGAAGCCTTTGGA-NCCTTACATTATTTCTTGCACTACGCATATGCTGCCAAAAAA]
[+] EMBL AK069475 [ACCAACCCCATCCCTAATCACCACCACCCCCCCATCCCACCATCGAACCGCCACCAAAAAAAGCCGAAGCTCGCTCGCCGCCGCCGCCGCCGCCGGGGACTTCGCCGGAGGGAGGAGAAGCCAACCCGCCCGCCCGCGCGCGCGTACGTACGAGGCCTGCTCCTTCCGTCGGAAGGGAAGCATCGGGATGGCGTCGATTTCGCCGACGTCTTCATCGGTCGCCGCCCTCCGCGGCCACCCGGTGCAGTTCGTGAAAGGCGGTGCAGTCTCCAAGGAAGCAAAGGGATCAATTTCCTTCTCACCCGTTGCGAATTCAAATAATGCCAATGTGAAATTTACGGGCTTGAGGGTAGCAGCATCATTGAAAAGGGATGGTGCTTTTCCAGGCGACGGTTACTCAGGGAATGATAACACGGTGTTACCAAAGAGCACTTCTGTTCGTGGCCAGGACTATCCAACTGCTGACTCTGTACTCCCAACGGAATCCATCATCGTGCCAGAAATCAGTAATGCTGGTTTGAAATGTGTTGCGGACATGTTCTCAGATGAGGACAAAGACACTGAACAAGATTTGGATAGCCCAACTGAGGGCTTCTCGTCTATTTCCGAGGCCATCAAAGATATTCAACAAGGAAAACTTGTGATTGTTGTTGACGATGAATCAAGAGAAAATGAGGGAGATCTTATAATGGCTGCTTCTTTGGTTACCCCAGAGGCCATGGCGTTTGTTGTAAGATATGGCACAGGAATAGTGTGTGTTAGCATGAAAGAAGAGGATCTTGAAAGATTGAACCTTCCTTTGATGGTTGCAACAAAGGAAAATGAGGAGAAGCTCTGTACTGCATTCACTGTTACAGTGGATGCTAAAGAGGGAACAACAACTGGGGTATCTGCAAAGGATAGGGCAAAGACAGTTATGACTCTTGCATCCCCTGACTCTAAGCCTGAAGACTTCAATCGGCCTGGTCATATTTTCCCTCTGAAATACAGAGAGGGTGGTGTTCTGAAACGAGCTGGACATACTGAAGCATCTGTAGATCTTGCTATGTTAGCTGGGTTACCTCCTGCTGCGGTCTTATGTGAGATTGTGGATGAGGATGGGTCCATGGCTCGCCTACCAAAGCTGCGCGT GTTTGCTGAAAGGGAGAATTTGAAGATTGTATCCATTGCTGACTTGATTAGATATAGGAGAAAAAGAGACAGGCTAGTTGAACGTTCATCTGTTGCACGCTTACCTTTGAGATGGGGTAATGTCCGCGCTTACTGCTACAGATCTGTTATTGATGGGATAGAGCATATTGCAATGGTGAAAGGGGAGA TTGGAGATGGTCAAGGCGTTTTAGTGAGGGTGCACTCCGAATGCCTCACAGGGGACATTTTTGGATCAGCAAGATGTGATTGTGGTGATCAGCTTGCCATGGCAATGGAGATGATTGAGAAGGCTGGAAGGGGTGTACTAGTTTATCTTCGTGGACATGAAGGGAGGGGTATTGGTCTCGGTCACAAGCTCCGTGCTTATAACCTGCAAGATGACGGGCGCGACACTGTGGAGGCTAATGAAGACCTAGGACTGCCTGTGGATTCACGGGAATATGGCATTGGTGCACAGATATTACGTGATCTGGGGGTCCGTTCAATGAAGTTGATGACTAATAACCCAGCAAAGTATGGTGGTCTCAAGGGTTATGGATTGAGCATTGTGGGCAGGGTTCCCTTGGTAACTCCAATCACCTCAGAGAATCGGAGATACCTGGAAACAAAGAGAACAAAGATGGGGCATGTATATGGATTGGCCAATGGCCAAGCTAGCCATCAGACGGGCAGCAATGGTGCCAAAGGGGAGCATTAGGCCAATCGGACTCAGGTTCACATTCTAATCCACGACAATCTTATGTGATGGAGTTTGTCA AATTATGCTACAACATATGTTCGTGGTGAACCAATTTTTTTTTAGCTGACAGTAGGTTGAAAGATGGGCGTAATAAAAGTATCCCTTTATTTGTTGTAATCCACAGCCACACAACTGGGTTATTACTGTAAATATATACACACACATAAACT GCTCCCTAGCGGGTACAGACTCCAGCCTTACCTG AATTG AGAAGACTGGCGATAAAAATATCGACTGAGATCCAAGGCAATACTAGTATGAATCTAACTCCCAATATTGAAAGAATTT ]
[+] EMBL CB620370 [ AACTGCTGCCTCTGTACTCCCAACGGAATCCGTCATCGTGCCAGAAATCAGTAATGCTGGTTTGAAATGTGTTGCGGACATGTTCTCAGATGAGGACAAAGACACTGAACAAGATTTGGATAGCCCAACTGAGGGCTTCTCGTCTATTTCCGAGGCCATCAAAGATATTCAACAAGGAAAACTTGTGATTGTTGTTGACGATGAATCAAGAGAAAATGAGGGAGATCTTATAATGGCTGCTTCTTTGGTTACCCCAGAGGCCATGGCGTTTGTTGTAAGATATGGCACAGGAATAGTGTGTGTTAGCATGAAAGAAGAGGATCTTGAAAGATTGAACCTTCCTTTGATGGTTGCAACAAAGGAAAATGAGGAGAAGCTCTGTACTGCATTCACTGTTACAGTGGATGCTAAACAGGGAACAACAACTGGGGTATCTGCAAAGGATAGGGCAAAGACAGTTATGACTCTTGCATCCCCTGACTCTAAGCCTGAAGACTTCAATCGGCCTGGTCATATTTTCCCTCTGAAATACAGAGAGGGTGGTGTTCTGAAACGAGCTGGACATACTGAAGCATCTGTAGATCTTGCTATGTTAGCTGGGTTACCTCCTGCTGCGGTCTTATGTGAGATTGTGGATGAGGATGGGTCCATGGCTCGCCTACCAAAGCTGCGCGT GTTTGCTGAAAGGGAGAATTTGAAGATTGTATCCATTGCTGACTTGATTAGATATAGGAGAAAAAGAGACAGGCTAGTTGAACGTTCATCTGTTGCACGCTTACCTTTGAGATGGGGTAATGTCCGCGCTTACTGCTAC ]
[+] EMBL AK058464 [ CGATGAATCAAGAGAAAATGAGGGAGATCTTATAGTGGCTGCTTCTTTGGTTACCCCAGAGGCCATGGCGTTTGTTGTAAGATATGGCACAGGAATAGTGTGTGTTAGCATGAAAGAAGAGGATCTTGAAAGATTGAACCTTCCTTTGATGGTTGCAACAAAGGAAAATGAGGAGAAGCTCTGTACTGCATTCACTGTTACAGTGGATGCTAAAGAGGGAACAACAACTGGGGTATCTGCAAAGGATAGGGCAAAGACAGTTATGACTCTTGCATCCCCTGACTCTAAGCCTGAAGACTTCAATCGGCCTGGTCATATTTTCCCTCTGAAATACAGAGAGGGTGGTGTTCTGAAACGAGCTGGACATACTGAAGCATCTGTAGATCTTGCTATGTTAGCTGGGTTACCTCCTGCTGCGGTCTTATGTGAGATTGTGGATGAGGATGGGTCCATGGCTCGCCTACCAAAGCTGCGCGT GTTTGCTGAAAGGGAGAATTTGAAGATTGTATCCATTGCTGACTTGATTAGATATAGGAGAAAAAGAGACAGGCTAGTTGAACGTTCATCTGTTGCACGCTTACCTTTGAGATGGGGTAATGTCCGCGCTTACTGCTACAGATCTGTTATTGATGGGATAGAGCATATTGCAATGGTGAAAGGGGAGA TTGGAGATGGTCAAGGCGTTTTAGTGAGGGTGCACTCCGAATGCCTCACAGGGGACATTTTTGGATCAGCAAGATGTGATTGTGGTGATCAGCTTGCCATGGCAATGGAGATGATTGAGAAGGCTGGAAGGGGTGTACTAGTTTATCTTCGTGGACATGAAGGGAGGGGTATTGGTCTCGGTCACAAGCTCCGTGCTTATAACCTGCAAGATGACGGGCGCGACACTGTGGAGGCTAATGAAGACCTAGGACTGCCTGTGGATTCACGGGAATATGGCATTGGTGCACAGATATTACGTGATCTGGGGGTCCGTTCAATGAAGTTGATGACTAATAACCCAGCAAAGTATGGTGGTCTCAAGGGTTATGGATTGAGCATTGTGGGCAGGGTTCCCTTGGTAACTCCAATCACCTCAGAGAATCGGAGATACCTGGAAACAAAGAGAACAAAGATGGGGCATGTATATGGATTGGCCAATGGCCAAGCTAGCCATCAGACGGGCAGCAATGGTGCCAAAGGGGAGCATTAGGCCAATCGGACTCAGGTTCACATTCTAATCCACGACAATCTTATGTGATGGAGTTTGTCA AATTATGCTACAACATATGTTCGTGGTGAACCAATTTTTTTTTAGCTGACAGTAGGTTGAAAGATGGGCGTAATAAAAGTATCCCTTTATTTGTTGTAATCCACAGCCACACAACTGGGTTATTACTGTAAATATATACACACACATAAACT GCTCCCTAGCGGGTACAGACTCCAGCCTTACCTG AATTG AGAAGACTGGCGATAAAAATATCGACTGAGATCCAAGGCAATACTAGTATGAATCTAACTCCCA ]
[+] EMBL AU062721 [ GGTTACCTNTCNCTGCGGTCTNATGTGAGATTGTGGATGAGGATGGGTCCATGGCTCGCCTACCAAAGCTGCGCGTNGTTTNCTGAAAGGGAGAATTTGAAGATTGTATCCATTGCTGACTTGATTAGATATAGGAGAAAAAGAGACAGGCTAGTTGAACGTTCATCTGTTGCACNCTTACCTTCGAGATGGGGTAATGTCCGCGCTTACTGCTACAGATCTNTTATTGATGGGATAGAGCATATTGCAATGGTGAAAGGGGAGATTTGGAGATGGT ]
[-] EMBL CB620371 [ CAAGATGTGATTGTGGTGATCAGCTTGCCATGGCAATGGAGATGATTGAGAAGGCTGGAAGGGGTGTACTAGTTTATCTTCGTGGACATGAAGGGAGGGGTATTGGTCTCGGTCACAAGCTCCGTGCTTATAACCTGCAAGATGACGGGCGCGACACTGTGGAGGCTAATGAAGACCTAGGACTGCCTGTGGATTCACGGGAATATGGCATTGGTGCACAGATATTACGTGATCTGGGGGTCCGTTCAATGAAGTTGATGACTAATAACCCAGCAAAGTATGGTGGTCTCAAGGGTTATGGATTGAGCATTGTGGGCAGGGTTCCCTTGGTAACTCCAATCACCTCAGAGAATCGGAGATACCTGGAAACAAAGAGAACAAAGATGGGGCATGTATATGGATTGGCCAATGGCCAAGCTAGCCATCAGACGGGCAGCAATGGCGCCAAAGGGGAGCATTAGGCCAATCGGACTCAGGTTCACATTCTAATCCACGACAATCTTATGTGATGGAGTTTGTCA AATTATGCTACAACATATGTTCGTGGTGAACCAATTTTTTTTTAGCTGACAGTAGGTTGAAAGATGGGCGTAATAAAAGTATCCCTTTATTTGTTGTAATCCACAGACACACAACTGGGTTATTACTGTAAATATGTACACACACATAAACT GCTCCCTAGCGGGTACAGACTCCAGCCTTACCTG AATTG AGAAGACCGGCGATAAAAATATCGACTG ]
[+] EMBL AU100767 [ CAATGAAGTTGATGACTAATAACCCAGCAAAGTATGGTGGTCTCAAGGGTTATGGATTGAGCATTGTGGGCAGGGTNCCCTTGGTAACTCCAATCACCTCAGAGAATCGGAGATACCTGGAAACAAAGAGAACAAAGATGGGGCATGTATATGGATTGGCCAATGGCCAAGCTAGCCATCAGACGGGCAGCAATGGTGCCAAAGGGGAGCATTAGGCCAATCGGACTCAGGTTCACATTCTAATCCACGACAATCTTATGTGATGGAGTTTGTCA AATTATGCTACAACATATGTTCGTGGTGAACCAATTTTTTTTTAGCTGACAGTAGGTTGAAAGATGGGCGTAATAAAAGTATCCCTTTATTTGTTGTAATCCACAGCCACACAACTGGGTTATTACTGTAAATATATACACACACATAAACT GCTNCCTAGCGGGTACAGACTCCAGCCTTACCTG AATTG AGAAGACTGGCGATAAAAATATCGACTGAGATCCAAGGCAATACTAGTATGAATCTAACTCCCAATATTGAAAAAAaaa ]
[+] EMBL AU031986 [ CCAAGCTANCCATCAGACGGGCAGCAATGGTGCCAAAGGGGANCATTAGGCCAATCGGACTCAGGTTCACATTCTAATCCACGACAATCTTATGTGATGGAGTTTNTCA AATTATGCTACAANATATGTTCGTGGTGAACCAATTTTTTTTTAGCTGACAGTAGGTTGAAAGATGGGCNTAATAAAAGTATCCCTTTATNTGTTGTAATCCACAGCCACACAACTGGGTTATTACTGTAAATATATACACACACATAAACT GCTCCCTAGCGGGTACAGACTCCAGCCTTACCTG AATTG AGAAGACTGGCGATAAAAATATCGACTGAGATCCAAGGCAATACTAGTATGAATCTAACTCCCAATATTGAAAGAATTTTTGTTCTGGGAAGCCTTTGGA NCCTTACATTATTTCTTGCACTACGCATATGCTGCCAAAAAA]
[+] EMBL BI794891 [ TTATGTGATGGAGTTTGTCACAATTATGCTACAACATATGTTCGTGGTGAACC ATTTTTTTTTAGCTGACAGTAGGTTGAAAGATGGGCGTAATAAAAGTATCCCTTTATTTGTTGTAATCCACAGACACACAACTGGGTTATTACTGTAAATATGTACACACACATAAACT GCTCCCTAGCGGGTACAGACTCCAGCCTTACCTG AATTG AGAAGACCGGCGATAAAAATATCGACTGAGATCC AGGC ATACTAGTATGAATCTAACTCCC ATATTGAAAGAATTTTTGTTCTGGGAAGCCTTTGGATCCCTTAaaaaaaaaa ]
[-] EMBL D42987 [ CACAGCCACACAACTGGGNTATTACTGTNAATATATACACACNCATAAACTAGCNCCCTANCGGGTACAGACTCCAGCCTTACCTGAAATTGTAGAAGACTGGCGATNAAAATATCGNCTTAGATCCNAGGCAATACTAGTATGAATCTAACTCCCAATATTGAAAGAATTTT ]
consensusID : consensus_13518#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 570 fasta sequence
[GTAAAATATACTAGTTTTACTCATTCCNTTTTAATGAGAATATATAGGGGTACTTAAAATAAGAGTTTATATATATTAATTGCTGAATCTGATTGATTCTACTCACTTCTGTTTGTGTAAATGCAGGGTGCAGTTCGTGAAAGGCGGTGCAGTCTCCAAGGAAGCAAAGGGATCAATTTCCTTCTCACCCGTTGCGAATTCAAATAATGCCAATGTGAAATTTACGGGCTTGAGGGTAGCAGCATCATTGAAAAGGGATGGTGCTTTTCCNGGCGACGGTTACTCAGGGAATGATAACACGGTGTTACCAAAGAGCACTTCTGTTCGTGGNCAGGACTATCCCAACTGCTGACTCTGTACTCCCCAACGGAATCCATCATCGTGCCAGAATTCAGTAATGCTGGTTTGAAATGTGTTGCGGACATGTTCTCAGATGAGGACAAAGACACTGAACAAGATTTGGATAGCCCAACTGAGGGCTTCTCGTCTATTTCCGAGNCCATCAAAGATATTCAACAAGGAAAAGTCAGTATATGCTAACCTTTTACTCATTTCATATCTTGTCNNNNN]
[+] EMBL OSR3041A [GTAAAATATACTAGTTTTACTCATTCCNTTTTAATGAGAATATATAGGGGTACTTAAAATAAGAGTTTATATATATTAATTGCTGAATCTGATTGATTCTACTCACTTCTGTTTGTGTAAATGCAGGGTGCAGTTCGTGAAAGGCGGTGCAGTCTCCAAGGAAGCAAAGGGATCAATTTCCTTCTCACCCGTTGCGAATTCAAATAATGCCAATGTGAAATTTACGGGCTTGAGGGTAGCAGCATCATTGAAAAGGGATGGTGCTTTTCCNGGCGACGGTTACTCAGGGAATGATAACACGGTGTTACCAAAGAGCACTTCTGTTCGTGGNCAGGACTATCCCAACTGCTGACTCTGTACTCCCCAACGGAATCCATCATCGTGCCAGAAT ]
[+] EMBL CF196382 [ TCTCACCCGTTGCGAATTCAAATAATGCCAATGTGAAATTTACGGGCTTGAGGGTAGCAGCATCATTGAAAAGGGATGGTCCTTTTCCAGGCGACGGTTACTCAGGGAATGATAACACGGTGTTACCAAAGAGCACTTCTGTTCGTGGCCAGGACTAT CCAACTGCTGACTCTGTACT CCCAACGGAATCCGTCATCGTGCCAGAAATCAGTAATGCTGGTTTGAAATGTGTTGCGGACATGTTCTCAGATGAGGACAAAGACACTGAACAAGATTTGGATAGCCCAACTGAGGGCTTCTCGTCTATTTCCGAGNCCATCAAAGATATTCAACAAGGAAAAGTCAGTATATGCTAACCTTTTACTCATTTCATATCTTGTCNNNNN]
consensusID : consensus_13518#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 406 fasta sequence
[AGGGGGGGCGNTAGAGCATTAGGCCNATCGGACTCAGGTTNCATTCTAATCCACGACAATCTTATGTGATGGAGTTTGNCAAATTATGCTACAACATATGTTCGTGGTGAACCAATTTTTTTTTAGCTGACAGTAGGTTGAAAGATGGGCGTAATAAAAGTATCCCTTTATTCGNTGTATCCACAGACACACAACTGGGTTATTACTGTAAATATGTACACACACATAAACTGCTCCCTAGCGGGTACAGACTCCAGCCTTACCTGAATTGAGAAGACCGGCGATAAAAATATCGACTGAGATCCAAGGCAATACTAGTATGAATCTAACTCCCAATATTGAAAGAATTCTTGTTCTGGGAAGCCTTTGGATCCTTACATTATTTCTTGCACTACGCAAAAAAAAA]
[+] EMBL CA766713 [AGGGGGGGCGNTAGAGCATTAGGCCNATCGGACTCAGGTTNCATTCTAATCCACGACAATCTTATGTGATGGAGTTTGNCAAATTATGCTACAACATATGTTCGTGGTGAACCAATTTTTTTTTAGCTGACAGTAGGTTGAAAGATGGGCGTAATAAAAGTATCCCTTTATTCGNTGTATCCACAGACACACAACTGGGTTATTACTGTAAATATGTACACACACATAAACTGCTCCCTAGCGGGTACAGACTCCAGCCTTACCTGAATTGAGAAGACCGGCGATAAAAATATCGACTGAGATCCAAGGCAATACTAGTATGAATCTAACTCCCAATATTGAAAGAATTCTTGTTCTGGGAAGCCTTTGGATCCTTACATTATTTCTTGCACTACGCAAAAAAAAA]
consensusID : consensus_13518#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 180 fasta sequence
[GTTATTACTGTAAATGATATGACACACACATAAACTGCTCCCTAGCGGGTACAGACTCCCCGCCTTACCTGGAATTGAGAAGACTGGCGATATAAAATATCGACTGAGATCCCAGCGCCAATACTAGTATGAATGCTGAACTCCCCATATGTGAAAGAATTTTTGTTCTGGGAACACCCT]
[+] EMBL BI806322 [GTTATTACTGTAAATGATATGACACACACATAAACTGCTCCCTAGCGGGTACAGACTCCCCGCCTTACCTGGAATTGAGAAGACTGGCGATATAAAATATCGACTGAGATCCCAGCGCCAATACTAGTATGAATGCTGAACTCCCCATATGTGAAAGAATTTTTGTTCTGGGAACACCCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13518#2 ------------------------------------------------------------
consensus_13518#3 ------------------------------------------------------------
consensus_13518#0 ACCAACCCCATCCCTAATCACCACCACCCCCCCATCCCACCATCGAACCGCCACCAAAAA 60
consensus_13518#1 ------------------------------------------------------------
consensus_13518#2 ------------------------------------------------------------
consensus_13518#3 ------------------------------------------------------------
consensus_13518#0 AAGCCGAAGCTCGCTCGCCGCCGCCGCCGCCGCCGGGGACTTCGCCGGAGGGAGGAGAAG 120
consensus_13518#1 ------------------------------------------------------------
consensus_13518#2 ------------------------------------------------------------
consensus_13518#3 ------------------------------------------------------------
consensus_13518#0 CCAACCCGCCCGCCCGCGCGCGCGTACGTACGAGGCCTGCTCCTTCCGTCGGAAGGGAAG 180
consensus_13518#1 ------------------------------------------------------------
consensus_13518#2 ------------------------------------------------------------
consensus_13518#3 ------------------------------------------------------------
consensus_13518#0 CATCGGGATGGCGTCGATTTCGCCGACGTCTTCATCGGTCGCCGCCCTCCGCGGCCACCC 240
consensus_13518#1 ------------------------------------------------------------
consensus_13518#2 ------------------------------------------------------------
consensus_13518#3 ------------------------------------------------------------
consensus_13518#0 GGTGCAGTTCGTGAAAGGCGGTGCAGTCTCCAAGGAAGCAAAGGGATCAATTTCCTTCTC 300
consensus_13518#1 ------------------------------------------------------------
consensus_13518#2 ------------------------------------------------------------
consensus_13518#3 ------------------------------------------------------------
consensus_13518#0 ACCCGTTGCGAATTCAAATAATGCCAATGTGAAATTTACGGGCTTGAGGGTAGCAGCATC 360
consensus_13518#1 ------------------------------------------------------------
consensus_13518#2 ------------------------------------------------------------
consensus_13518#3 ------------------------------------------------------------
consensus_13518#0 ATTGAAAAGGGATGGTGCTTTTCCAGGCGACGGTTACTCAGGGAATGATAACACGGTGTT 420
consensus_13518#1 ------------------------------------------------------------
consensus_13518#2 ------------------------------------------------------------
consensus_13518#3 ------------------------------------------------------------
consensus_13518#0 ACCAAAGAGCACTTCTGTTCGTGGCCAGGACTATCCAACTGCTGACTCTGTACTCCCAAC 480
consensus_13518#1 ------------------------------------------------------------
consensus_13518#2 ------------------------------------------------------------
consensus_13518#3 ------------------------------------------------------------
consensus_13518#0 GGAATCCATCATCGTGCCAGAAATCAGTAATGCTGGTTTGAAATGTGTTGCGGACATGTT 540
consensus_13518#1 ------------------------------------------------------------
consensus_13518#2 ------------------------------------------------------------
consensus_13518#3 ------------------------------------------------------------
consensus_13518#0 CTCAGATGAGGACAAAGACACTGAACAAGATTTGGATAGCCCAACTGAGGGCTTCTCGTC 600
consensus_13518#1 ------------------------------------------------------------
consensus_13518#2 ------------------------------------------------------------
consensus_13518#3 ------------------------------------------------------------
consensus_13518#0 TATTTCCGAGGCCATCAAAGATATTCAACAAGGAAAACTTGTGATTGTTGTTGACGATGA 660
consensus_13518#1 ------------------------------------------------------------
consensus_13518#2 ------------------------------------------------------------
consensus_13518#3 ------------------------------------------------------------
consensus_13518#0 ATCAAGAGAAAATGAGGGAGATCTTATAATGGCTGCTTCTTTGGTTACCCCAGAGGCCAT 720
consensus_13518#1 ------------------------------------------------------------
consensus_13518#2 ------------------------------------------------------------
consensus_13518#3 ------------------------------------------------------------
consensus_13518#0 GGCGTTTGTTGTAAGATATGGCACAGGAATAGTGTGTGTTAGCATGAAAGAAGAGGATCT 780
consensus_13518#1 ------------------------------------------------------------
consensus_13518#2 ------------------------------------------------------------
consensus_13518#3 ------------------------------------------------------------
consensus_13518#0 TGAAAGATTGAACCTTCCTTTGATGGTTGCAACAAAGGAAAATGAGGAGAAGCTCTGTAC 840
consensus_13518#1 ------------------------------------------------------------
consensus_13518#2 ------------------------------------------------------------
consensus_13518#3 ------------------------------------------------------------
consensus_13518#0 TGCATTCACTGTTACAGTGGATGCTAAAGAGGGAACAACAACTGGGGTATCTGCAAAGGA 900
consensus_13518#1 ------------------------------------------------------------
consensus_13518#2 ------------------------------------------------------------
consensus_13518#3 ------------------------------------------------------------
consensus_13518#0 TAGGGCAAAGACAGTTATGACTCTTGCATCCCCTGACTCTAAGCCTGAAGACTTCAATCG 960
consensus_13518#1 ------------------------------------------------------------
consensus_13518#2 ------------------------------------------------------------
consensus_13518#3 ------------------------------------------------------------
consensus_13518#0 GCCTGGTCATATTTTCCCTCTGAAATACAGAGAGGGTGGTGTTCTGAAACGAGCTGGACA 1020
consensus_13518#1 ------------------------------------------------------------
consensus_13518#2 ------------------------------------------------------------
consensus_13518#3 ------------------------------------------------------------
consensus_13518#0 TACTGAAGCATCTGTAGATCTTGCTATGTTAGCTGGGTTACCTCCTGCTGCGGTCTTATG 1080
consensus_13518#1 ------------------------------------------------------------
consensus_13518#2 ------------------------------------------------------------
consensus_13518#3 ------------------------------------------------------------
consensus_13518#0 TGAGATTGTGGATGAGGATGGGTCCATGGCTCGCCTACCAAAGCTGCGCGTGTTTGCTGA 1140
consensus_13518#1 ------------------------------------------------------------
consensus_13518#2 ------------------------------------------------------------
consensus_13518#3 ------------------------------------------------------------
consensus_13518#0 AAGGGAGAATTTGAAGATTGTATCCATTGCTGACTTGATTAGATATAGGAGAAAAAGAGA 1200
consensus_13518#1 ------------------------------------------------------------
consensus_13518#2 ------------------------------------------------------------
consensus_13518#3 ------------------------------------------------------------
consensus_13518#0 CAGGCTAGTTGAACGTTCATCTGTTGCACGCTTACCTTTGAGATGGGGTAATGTCCGCGC 1260
consensus_13518#1 ------------------------------------------------------------
consensus_13518#2 ------------------------------------------------------------
consensus_13518#3 ------------------------------------------------------------
consensus_13518#0 TTACTGCTACAGATCTGTTATTGATGGGATAGAGCATATTGCAATGGTGAAAGGGGAGAT 1320
consensus_13518#1 ------------------------------------------------------------
consensus_13518#2 ------------------------------------------------------------
consensus_13518#3 ------------------------------------------------------------
consensus_13518#0 TGGAGATGGTCAAGGCGTTTTAGTGAGGGTGCACTCCGAATGCCTCACAGGGGACATTTT 1380
consensus_13518#1 ------------------------------------------------------------
consensus_13518#2 ------------------------------------------------------------
consensus_13518#3 ------------------------------------------------------------
consensus_13518#0 TGGATCAGCAAGATGTGATTGTGGTGATCAGCTTGCCATGGCAATGGAGATGATTGAGAA 1440
consensus_13518#1 ------------------------------------------------------------
consensus_13518#2 ------------------------------------------------------------
consensus_13518#3 ------------------------------------------------------------
consensus_13518#0 GGCTGGAAGGGGTGTACTAGTTTATCTTCGTGGACATGAAGGGAGGGGTATTGGTCTCGG 1500
consensus_13518#1 ------------------------------------------------------------
consensus_13518#2 ------------------------------------------------------------
consensus_13518#3 ------------------------------------------------------------
consensus_13518#0 TCACAAGCTCCGTGCTTATAACCTGCAAGATGACGGGCGCGACACTGTGGAGGCTAATGA 1560
consensus_13518#1 ------------------------------------------------------------
consensus_13518#2 ------------------------------------------------------------
consensus_13518#3 ------------------------------------------------------------
consensus_13518#0 AGACCTAGGACTGCCTGTGGATTCACGGGAATATGGCATTGGTGCACAGATATTACGTGA 1620
consensus_13518#1 ------------------------------------------------------------
consensus_13518#2 ------------------------------------------------------------
consensus_13518#3 ------------------------------------------------------------
consensus_13518#0 TCTGGGGGTCCGTTCAATGAAGTTGATGACTAATAACCCAGCAAAGTATGGTGGTCTCAA 1680
consensus_13518#1 ------------------------------------------------------------
consensus_13518#2 ------------------------------------------------------------
consensus_13518#3 ------------------------------------------------------------
consensus_13518#0 GGGTTATGGATTGAGCATTGTGGGCAGGGTTCCCTTGGTAACTCCAATCACCTCAGAGAA 1740
consensus_13518#1 --GTAAAATATACTAGTTTTACTCATTCCNTTTTAATGAGAATATATAGGGGTACTTAAA 58
consensus_13518#2 ------------------------------------------------------------
consensus_13518#3 ------------------------------------------------------------
consensus_13518#0 TCGGAGATACCTGGAAACAAAGAGAACAAAGATGGGGCATGTATATGGATTGGCCAATGG 1800
consensus_13518#1 ATAAGAGTTTATATATATTAATTGCTGAATCTGATTGATTCTACTCACTTCTGTTTGTGT 118
consensus_13518#2 ---------------------------AGGGGGGGCGNTAGAGCATTAGGCCNATCGGAC 33
consensus_13518#3 ------------------------------------------------------------
consensus_13518#0 CCAAGCTAGCCATCAGACGGGCAGCAATGGTGCCAAAGGGGAGCATTAGGCCAATCGGAC 1860
consensus_13518#1 AAATGCAGGGTGCAGTTCGTGAAAGGCGGTGCAGTCTCCAAGGAAGCAAAGGGATCAATT 178
consensus_13518#2 TCAGGTTN-CATTCTAATCCACGACAATCTTATGTGATGGAGTTTGNCAAATTATGCTAC 92
consensus_13518#3 ------------------------------------------------------------
consensus_13518#0 TCAGGTTCACATTCTAATCCACGACAATCTTATGTGATGGAGTTTGTCAAATTATGCTAC 1920
consensus_13518#1 TCCTTCTCACCCGTTGCGAATTCAAATAATGCCAATGTGAAATTTACGGGCTTGAGGGTA 238
consensus_13518#2 AACATATGTTCGTGGTGAACCAATTTTTTTTTAGCTGACAGTAGGTTGAAAGATG----- 147
consensus_13518#3 ------------------------------------------------------------
consensus_13518#0 AACATATGTTCGTGGTGAACCAATTTTTTTTTAGCTGACAGTAGGTTGAAAGATG----- 1975
consensus_13518#1 GCAGCATCATTGAAAAGGGATGGTGCTTTTCCNGGCGACGGTTACTCAGGGAATGATAAC 298
consensus_13518#2 --GGCGTAATAAAAGTATCCCTTTATTCGNTGTA-TCCACAGACACACAACTGGGTTATT 204
consensus_13518#3 ------------------------------------------------------GTTATT 6
consensus_13518#0 --GGCGTAATAAAAGTATCCCTTTATTTGTTGTAATCCACAGCCACACAACTGGGTTATT 2033
consensus_13518#1 ACGGTGTTACCAAAGAGCACTTCTGTTCGTGGNCAGGACTATCCCAACTGCTGACTCTGT 358
* *
consensus_13518#2 ACTGTAAAT-ATGT-ACACACACATAAACTGCTCCCTAGCGGGTACAGACTCCA---GCC 259
consensus_13518#3 ACTGTAAATGATATGACACACACATAAACTGCTCCCTAGCGGGTACAGACTCCCC--GCC 64
consensus_13518#0 ACTGTAAAT-ATAT-ACACACACATAAACTGCTCCCTAGCGGGTACAGACTCCA---GCC 2088
consensus_13518#1 ACTCCCCA--ACGGAATCCATCATCGTGCCAGAATTCAGTAA-TGCTGGTTTGAAATGTG 415
*** * * * ** * ** * * * * *
consensus_13518#2 TTACCTG-AATTGAGAAGACCGGCGATA-AAAATATCGACTGAGATCCAAG----GCAAT 313
consensus_13518#3 TTACCTGGAATTGAGAAGACTGGCGATATAAAATATCGACTGAGATCCCAGCG--CCAAT 122
consensus_13518#0 TTACCTG-AATTGAGAAGACTGGCGATA-AAAATATCGACTGAGATCCAAG----GCAAT 2142
consensus_13518#1 TTGCGGACATGTTCTCAGA-TGAGGACA-AAGACACTGAACAAGATTTGGATAGCCCAAC 473
** * * * *** * ** * ** * * ** **** ***
consensus_13518#2 ACTAGTATGAATCT--AACTCCCAATAT-TGAAAGAATTCTTGTTCTGGGAAGCCTTTGG 370
consensus_13518#3 ACTAGTATGAATGCTGAACTCCCCATATGTGAAAGAATTTTTGTTCTGGGAACACCCT-- 180
consensus_13518#0 ACTAGTATGAATCT--AACTCCCAATAT-TGAAAGAATTTTTGTTCTGGGAAGCCTTTGG 2199
consensus_13518#1 TGAGGGCTTCTCGTCTATTTCCGAGNCCATCAAAGATATTCAACAAGGAAAAGTCAGTAT 533
* * * *** * ***** * * ** * *
consensus_13518#2 ATCCTTACATT--ATTTCTTGCACTACGCAAAAAAAAA------- 406
consensus_13518#3 ---------------------------------------------
consensus_13518#0 ANCCTTACATT--ATTTCTTGCACTACGCATATGCTGCCAAAAAA 2242
consensus_13518#1 ATGCTAACCTTTTACTCATTTCATATCTTGTCNNNNN-------- 570
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||