These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13521#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1428 fasta sequence [TTGTGTTTATAGCAGAAAATGCTTTCCTGATTCTCCCATCCGACTATGCTGTTCTGCACTGGCGCACGGCACCAAATAAAAGCCTCGGCTCGCCTCGAGCTG-TCCCCCCATCCCCCAACTGGAGAGTAGTAGATCGATTCGATCCACCCTCCGATTCCTTTACCGAACCGTGGGGGAAATCCGCGCCGGGGATGTCGTCGTCGGTCGGAGGCGGAGGGGGAGGTGGCGCGGGCGGCGGCGGCGGTGGCGGAGGAGCGGACATTGCGAGCCTGCTGGATAAGGCCAAGGAGCTGGACCAGCTGCGCAAGGAGCAGGACGAGGTGGTCACCGAGATCAACAAGATGCACAAGAAGATCCTCTCCTCTCCAGAGATGGTTGATAAACAGGTTGATGCTACGTTGATTCGGCTTCGTGCTTTATATACACGTGCCAAAGAACTTTGTGAGAGTGAAGTCAGTGCATCGTCTGCTTTGGTTGGACTATTGGATGGTTTGTTGCAATCTGGAACTTCAGCTGCACAACGAAAAAAGATAGAAGTTGGTGAGCAGAAAAAGAAGAGGATGAAGTCTGATACAGATACTACACGATTCTCCTCTGCATCTATGAGGAGCCAACTTGACCAAGCTACAAACCTGAAAGGAGAACAGGTTGCAGCTAAGGTCAAATCAGACGAAGAAAAAGATGAATGGTTTGTGGTGAAGGTGATACATTTCGATAAGGAAACAAAAGAATATGAGGTACTTGATGAGGAGCCAGGTGACGATGAAGAGAGTGCCCAAAAGAAGTACAAGTTGCCTATGTC-AGATATTATTCCAT-TTCCA-AAGAGAGGGGATCCTTCCAGTGCCCCAGATTTTGGGCAGGGTCGACAAGTCTTAGCTGTTTATCCTAGCACAACAGCACTATATAGAGCTACTGTTGCCTCTAATCGT-AAGAGGAAATCTGACGATTATCTACTCTTGTTTGATGATGACGAGGAGGATGGAAATCTACCACAAAGAGCTGTGCCGTTCTATAGAGTGGTTCCTCTCCCGGAGGGCCACCGGCAGTGAAAATCTCAGTTGGATCCGTCTTTACCCCGGCCAGTGTAGTGTGTGAAGATAGGAGTGTGAGAGTGTCTGCCTGACAATGTAGTAATTTTGTTTTATCTGCACCTTGTCCGCAGCATGCAGATTGTACTACCAAAGTGACTTCTAAGATGTCCA-AGGTTCAGCGATCATGTAAATAGGTTGATTCAGTGTTGCTCTATAA-CAAAAATAA-GTGATTTCCCCTTCGAAAAAAAAAACGCCGCACACCTTATCTGGCCTCTGCTTGGTGTGCTTCGAGTTATTGCAACGCAGGGCACTACAGTCGTATCGTCATATTGTAATTGATGCCTTCGTTGCATTGGAAGATGACGCGGCATTTGTGCATTGCACCAAAAAAAAAAGA] [+] EMBL OSS15225A [TTGTGTTTATAGCAGAAAATGCTTTCCTGATTCTCCCATCCGACTATGCTGTTCTGCACTGGCGCACGGCACCAAATAAAAGCCTCGGCTCGCCTCGA CTGTTCCCCCCATCCCCCAACTGGAGAGTAGTAGATCGATTCGATCCACCCTCCGATTCCTTTACCGAACCGTGGGGGAAATCCGCGCCGGGGATGTCGTCGTCGGTCGGANGCGGANGTGGA ] [+] EMBL AK073696 [ ATGCTGTTCTGCACTGGCGCACGGCACCAAATAAAAGCCTCGGCTCGCCTCGAGCTG TCCCCCCATCCCCCAACTGGAGAGTAGTAGATCGATTCGATCCACCCTCCGATTCCTTTACCGAACCGTGGGGGAAATCCGCGCCGGGGATGTCGTCGTCGGTCGGAGGCGGAGGGGGAGGTGGCGCGGGCGGCGGCGGCGGTGGCGGAGGAGCGGACATTGCGAGCCTGCTGGATAAGGCCAAGGAGCTGGACCAGCTGCGCAAGGAGCAGGACGAGGTGGTCACCGAGATCAACAAGATGCACAAGAAGATCCTCTCCTCTCCAGAGATGGTTGATAAACAGGTTGATGCTACGTTGATTCGGCTTCGTGCTTTATATACACGTGCCAAAGAACTTTGTGAGAGTGAAGTCAGTGCATCGTCTGCTTTGGTTGGACTATTGGATGGTTTGTTGCAATCTGGAACTTCAGCTGCACAACGAAAAAAGATAGAAGTTGGTGAGCAGAAAAAGAAGAGGATGAAGTCTGATACAGATACTACACGATTCTCCTCTGCATCTATGAGGAGCCAACTTGACCAAGCTACAAACCTGAAAGGAGAACAGGTTGCAGCTAAGGTCAAATCAGACGAAGAAAAAGATGAATGGTTTGTGGTGAAGGTGATACATTTCGATAAGGAAACAAAAGAATATGAGGTACTTGATGAGGAGCCAGGTGACGATGAAGAGAGTGCCCAAAAGAAGTACAAGTTGCCTATGTC AGATATTATTCCAT TTCCA AAGAGAGGGGATCCTTCCAGTGCCCCAGATTTTGGGCAGGGTCGACAAGTCTTAGCTGTTTATCCTAGCACAACAGCACTATATAGAGCTACTGTTGCCTCTAATCGT AAGAGGAAATCTGACGATTATCTACTCTTGTTTGATGATGACGAGGAGGATGGAAATCTACCACAAAGAGCTGTGCCGTTCTATAGAGTGGTTCCTCTCCCGGAGGGCCACCGGCAGTGAAAATCTCAGTTGGATCCGTCTTTACCCCGGCCAGTGTAGTGTGTGAAGATAGGAGTGTGAGAGTGTCTGCCTGACAATGTAGTAATTTTGTTTTATCTGCACCTTGTCCGCAGCATGCAGATTGTACTACCAAAGTGACTTCTAAGATGTCCA AGGTTCAGCGATCATGTAAATAGGTTGATTCAGTGTTGCTCTATAA CAAAAATAA GTGAT ] [+] EMBL AU162355 [ CGCACGGCACCAAATAAAAGCCTCGGCTCGCCTCGAGCTG TCCCCCCATCCCCCAACTGGAGAGTAGTAGATCGATTCGATCCACCCTCCGATTCCTTTACCGAACCGTGGGGGAAATCCGCGCCGGGGATGTCGTCGTCGGTCGGAGGCGGAGGGGGAGGTGGCGCGGGCGGCGGCGGCGGTGGCGGAGGAGCGGACATTGCGAGCCTGCTGGATAAGGCCAAGGAGCTGGACCAGCTGCGCAAGGAGCAGGACGAGGTGGTCACCGAGATCAACAAGATGCACAAGAAGATCCTCTCCTCTCCAGAGATGGTTGATAAACAGGTTGATGCTACGTTGATTCGGCTNCGTGCTTTATATACACGTGCCAAAGAACTTTGTGAGAGTGAAGTCAGTGCATCGNCTGCTTTGGTTGGACTATTGGATGGTTTGTTGCAATCTGG ] [+] EMBL CB681916 [ GAGGTGGCGCGGGCGGCGGCGGCGGTGGCGGAGGAGCGGACATTGCGAGCCTGCTGGATAAGGCCAAGGAGCTGGACCAGCTGCGCAAGGAGCAGGACGAGGTGGTCACCGAGATCAACAAGATGCACAAGAAGATCCTCTCCTCTCCAGAGATGGTTGATAAACAGGTTGATGCTACGTTGATTCGGCTTCGTGCTTTATATACACGTGCCAAAGAACTTTGTGAGAGTGAAGTCAGTGCATCGTCTGCTTTGGTTGGACTATTGGATGGTTTGTTGCAATCTGGAACTTCAGCTGCACAACGAAAAAAGATAGAAGTTGGTGAGCAGAAAAAGAAGAGGATGAAGTCTGATACAGATACTACACGATTCTCCTCTGCATCTATGAGGAGCCAACTTGACCAAGCTACAAACCTGAAAGGAGAACAGGTTGCAGCTAAGGTCAAATCAGACGAAGAAAAAGATGAATGGTTTGTGGTGAAGGTGATACATTTCGATAAGGAAACAAAAGAATATGAGGTACTTGATGAGGAGCCAGGTGACGATGAAGAGAGTGCCCAAAAGAAGTACAAGTTGCCTATGTC AGATATTATTCCAT TTCCA AAGAGAGGGGATCCTTCCAGTGCCCCAGATTTTGGGCAGGGTCGACAAGTCTTAGCTGTTTATCCTAGCACAACAGCACTATATAGAGCTACTGTTGCCTCTAATCGT AAGAGGAAATCTGACGATTATCTACTCTTng ] [+] EMBL BP184944 [ GCGGCGGCGGTGGCGGAGGAGCGGACATTGCGAGCCTGCTGGATAAGGCCAAGGAGCTGGACCAGCTGCGCAAGGAGCAGGACGAGGTGGTCACCGAGATCAACAAGATGCACAAGAAGATCCTCTCCTCTCCAGAGATGGTTGATAAACAGGTTGATGCTACGTTGATTCGGCTTCGTGCTTTATATACACGTGCCAAAGAACTTTGTGAGAGTGAAGTCAGTGCATCGTCTGCTTTGGTTGGACTATTGGATGGTTTGTTGCAATCTGGAACTTCAGCTGCACAACGAAAAAAGATAGAAGTTGGTGAGCAGAAAAAGAAGAGGATGAAGTCTGATACAGATACTACACGATTCTCCTCTGCATCTATGAGGAGCCAACTTGACCAAGCTACAAACCTGAAAGGAGAACAGGTTGCAGCTAAGGTCAAATCAGACGAAGAAAAAGA ] [+] EMBL AU031404 [ GTTGCAGCTAAGGTCAAATCAGACGAAGAAAAAGATGAATGGTTTGTGGTGNNGGTGATACATTTCGATAAGGAAACAAAAGAATATGAGGTACTTGATGAGGAGCCAGGTGACGATGAAGAGAGTGCCCAAAAGAAGTACAAGTTGCCTATGTC AGATATTATTCCAT TTCCA AAGAGAGGGGATCCTTCCAGTGCCCCAGATTTTGGGCAGGGTCGACAAGTCTTAGCTGTTTATCCTAGCACAACAGCACTATATAGAGCTACTGTTGCCTCTAATCGT AAGAGGAAATCTGACGATTATCTACTCTTGTTTGATGATGACGAGGAGGATGGAAATCTACCACAAAGAGCTGTGCCGTTCTATAGAGTGGTTCCTCTCCCGGAGGGCCACCGGCAGTGAAAATCTCAGTTGGATCCGTCTTTACCCCGGCCAGTGTAGTGTGTGAAGATAGGAGTGTGAGAGTGTCTGCCTGACAATGTAGTAATTTTGTTTTATCTGCACCTTGTCCGCAGCATGCAGATTGTACTACCAAAGTGACTTCTAAGATGTCCA AGGTTCAGCGATCATGTAAATAGGTTGATTCAGTGTTGCTCTATAA CAAAAATAA GTGATTTCCCCTTCGAAAAAAAA ] [-] EMBL CB681917 [ GACGAAGAAAAAGATGAATGGTTTGTGGTGAAGGTGATACATTTCGATAAGGAAACAAAAGAATATGAGGTACTTGATGAGGAGCCAGGTGACGATGAAGAGAGTGCCCAAAAGAAGTACAAGTTGCCTATGTC AGATATTATTCCAT TTCCA AAGAGAGGGGATCCTTCCAGTGCCCCAGATTTTGGGCAGGGTCGACAAGTCTTAGCTGTTTATCCTAGCACAACAGCACTATATAGAGCTACTGTTGCCTCTAATCGT AAGAGGAAATCTGACGATTATCTACTCTTGTTTGATGATGACGAGGAGGATGGAAATCTACCACAAAGAGCTGTGCCGTTCTATAGAGTGGTTCCTCTCCCGGAGGGCCACCGGCAGTGAAAATCTCAGTTGGATCCGTCTTTACCCCGGCCAGTGTAGTGTGTGAAGATAGGAGTGTGAGAGTGTCTGCCTGACAATGTAGTAATTTTGTTTTATCTGCACCTTGTCCGCAGCATGCAGATTGTACTACCAAAGTGACTTCTAAGATGTCCA AGGTTCAGCGATCATGTAAATAGGTTGATTCAGTGTTGCTCTATAA CAAAAATAA GTGATTTCCCCTTCGAAAAACGCACCGCCGCACACCTTATCTGGCCTCTGCTTGGTGTGCTTCGAGTTATTGCAACGCAGGGCACTACAGTCGTATCGTCATATTGTAATTGATGCCTTCGTTGCATTGGAAGATGACGCGGCATTTGTGCATTGCACCAAAAAAAAAAGA] [+] EMBL BM038925 [ ATGAGGTACTTGATGAGGAGCCAGGTGACGATGAAGAGAGTGCCC AAAGAAGTACAAGTTGCCTATGTC AGATATTATTCCATGTTCC AAGAGAGGGGATCCTTCCAGTGCCCCAGATTTTGGGCA GGTCGACAAGTCTTAGCTGTTTATCCTAGCAC ACAGCACTATATAGAGCTACTGTTGCCTCTAATCGTGAAGAGGAAATCTGACGATTATCTACTCTTGTTTGATGATGACGAGGAGGATGGAAATCTACCAC AAGAGCTGT CCGTTCTATAGAGTGGTTCCTCTCCCGGAGGGCCACCGGCAGTGAAAATCTCAGTTGGATCCGTCTTTACCCCGGCCNGTGTAGTGTGTGAAGATAGGAGTGTGAGNGTGTCTGCCTGACCATGTAGTAATTTTGTTTTATCTGCACCTTGTCCGCAGCATGCAGATTGTACTACCCAAGTGACTTCTAAGATGTCCA AGGTTCAGCGATCATGTAAATAGGTTGATTCAGTGTTGCTCTATAACCAAAACTAACGTGATTTCCCCTTCGAAAAAAAAAA ] [+] EMBL BI795550 [ GTGCCCAAAAGAAGTACAAGTTGCCTATGTCAAGATATTATTCCAT TTCCACAAGAGAGGGGATCCTTCCAGTGCCCCAGATTTTGGGCAGGGTCGACAAGTCTTAGCTGTTTATCCTAGCAC ACAGCACTATATAGAGCTACTGTTGCCTCTAATCGT AAGAGGAAATCTGACGATTATCTACTCTTGTTTGATGATGACGAGGAGGATGGAAATCTACCACCAAGAGCTGTGCCGTTCTATAGAGTGGTTCCTCTCCCGGAGGGCCACCGGCAGTGAAAATCTCAGTTGGATCCGTCTTTACCCCGGCCAGTGTAGTGTGTGAAGATAGGAGTGTGAGAGTGTCTGCCTGACAATGTAGTAATTTTGTTTTATCTGCACCTTGTCCGCAGCATGCAGATTGTACTACCCAAGTGACTTCTAAGATGTCCACAGGTTCAGCGATCATGTAAATAGGTTGATTCAGTGTTGCTCTATAACCAAAAATAA GTGATTTCCCCTTCGAAAAAAAAAA ] consensusID : consensus_13521#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 721 fasta sequence [GAACCAGCGAGTGACCTTTTTTGGTGAAAGACCAGGATTTGAACCCTGGTCAGTAGCTTCCCAACAGAAGGCATTTACCACCATGCTATACGCATGTTCGCTGTACTCTTGTTAAAGCACTCTAGTTTTTTATGTATATGATGTTTAGTGAAACATTTGCAAACTCTGAGCATTAATTTGCACTATAATTGATGTTTGTTCCACATGTAAAATAATGTTACTTCCCCCTTTTGTAATAGGAAGTACAAGTTGCCTATGTCAGATATTATTCCATTTCCAAAGAGAGGGGATCCTTCCAGTGCCCCAGATTTTGGGCAGGGTCGACAAGTCTTAGCTGTTTATCCTAGCACAACAGCACTATATAGAGCTACTGTTGCCTCTAATCGTAAGAGGAAATCTGACGATTATCTACTCTTGTTTGATGATGACGAGGAGGATGGAAATCTACCACAAAGAGCTGTGCCGTTCTATAGAGTGGTTCCTCTCCCGGAGGGCCACCGGCAGTGAAAATCTCAGTTGGATCCGTCTTTACCCCGGCCAGTGTAGTGTGTGAAGATAGGAGTGTGAGAGTGTCTGCCTGACAATGTAGTAATTTTGTTTTATCTGCACCTTGTCCGCAGCATGCAGATTGTACTACCAAAGTGACTTTTAAGATGTCCAAGGTTCAGCGATCATGTAAATAGGTTGATTCAGTGTTGCTGTATAACAAAAATAAGTGATT] [-] EMBL CB678258 [GAACCAGCGAGTGACCTTTTTTGGTGAAAGACCAGGATTTGAACCCTGGTCAGTAGCTTCCCAACAGAAGGCATTTACCACCATGCTATACGCATGTTCGCTGTACTCTTGTTAAAGCACTCTAGTTTTTTATGTATATGATGTTTAGTGAAACATTTGCAAACTCTGAGCATTAATTTGCACTATAATTGATGTTTGTTCCACATGTAAAATAATGTTACTTCCCCCTTTTGTAATAGGAAGTACAAGTTGCCTATGTCAGATATTATTCCATTTCCAAAGAGAGGGGATCCTTCCAGTGCCCCAGATTTTGGGCAGGGTCGACAAGTCTTAGCTGTTTATCCTAGCACAACAGCACTATATAGAGCTACTGTTGCCTCTAATCGTAAGAGGAAATCTGACGATTATCTACTCTTGTTTGATGATGACGAGGAGGATGGAAATCTACCACAAAGAGCTGTGCCGTTCTATAGAGTGGTTCCTCTCCCGGAGGGCCACCGGCAGTGAAAATCTCAGTTGGATCCGTCTTTACCCCGGCCAGTGTAGTGTGTGAAGATAGGAGTGTGAGAGTGTCTGCCTGACAATGTAGTAATTTTGTTTTATCTGCACCTTGTCCGCAGCATGCAGATTGTACTACCAAAGTGACTTTTAAGATGTCCAAGGTTCAGCGATCATGTAAATAGGTTGATTCAGTGTTGCTGTATAACAAAAATAAGTGATT] consensusID : consensus_13521#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 714 fasta sequence [ACCCTCCGATTCCTTTACCGAACCGTGGGGGAAATCCGCGCCGGGGATGTCGTCGTCGGTCGGAGGCGGAGGGGGAGGTGGCGCGGGCGGCGGCGGCGGTGGCGGAGGAGCGGACATTGCTAGCCTGCTGGATAAGGCCAAGGAGCTGGACCAGCTGCGCAAGGAGCAGGACGAGGTGGTCACCGAGATCAACAAGATGCACAAGAAGATCCTCTCCTCTCCAGAGATGGTTGATAAACAGGTTGATGCTACGTTGATTCGGCTTCGTGCTTTATATACACGTGCCAAAGAACTTTGTGAGAGTGAAGTCAGTGCATCGTCTGCTTTGGTTGGACTATTGGATGGTTTGTTGCAATCTGGAACTTCAGCTGCACAACGAAAAAAGATAGAAGTTGGTGAGCACAAAAAGAAGAGGATGAAGTCTGATACAGATACTACACGATTCTCCTCTGCATCTATGAGGAGCCAACTTGACCAAGCTACAAACCTGAAAGGAGAACAGGTTGCAGCTAAGGTCAAATCAGACGAAGAAAAAGATGAATGGTTTGTGGTGAAGGTGATACATTTCGATAAGGAAACAAAAGAATATGAGGTACTTGATGAGGAGCCAGGTGACGATGAAGAGAGTGCCCAAAAGTATGAGATAAGTCCAGGACTGTCATTTTGGTTTCTTGTTTGCTTTTACTATAACAATCAGGTCATTTTTCAATATAT] [+] EMBL CB678257 [ACCCTCCGATTCCTTTACCGAACCGTGGGGGAAATCCGCGCCGGGGATGTCGTCGTCGGTCGGAGGCGGAGGGGGAGGTGGCGCGGGCGGCGGCGGCGGTGGCGGAGGAGCGGACATTGCTAGCCTGCTGGATAAGGCCAAGGAGCTGGACCAGCTGCGCAAGGAGCAGGACGAGGTGGTCACCGAGATCAACAAGATGCACAAGAAGATCCTCTCCTCTCCAGAGATGGTTGATAAACAGGTTGATGCTACGTTGATTCGGCTTCGTGCTTTATATACACGTGCCAAAGAACTTTGTGAGAGTGAAGTCAGTGCATCGTCTGCTTTGGTTGGACTATTGGATGGTTTGTTGCAATCTGGAACTTCAGCTGCACAACGAAAAAAGATAGAAGTTGGTGAGCACAAAAAGAAGAGGATGAAGTCTGATACAGATACTACACGATTCTCCTCTGCATCTATGAGGAGCCAACTTGACCAAGCTACAAACCTGAAAGGAGAACAGGTTGCAGCTAAGGTCAAATCAGACGAAGAAAAAGATGAATGGTTTGTGGTGAAGGTGATACATTTCGATAAGGAAACAAAAGAATATGAGGTACTTGATGAGGAGCCAGGTGACGATGAAGAGAGTGCCCAAAAGTATGAGATAAGTCCAGGACTGTCATTTTGGTTTCTTGTTTGCTTTTACTATAACAATCAGGTCATTTTTCAATATAT] consensusID : consensus_13521#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 689 fasta sequence [GATCTCCATCAATTTGTGCCTTGTTCACTCGTGCAAATCTGGTCAAATTCTTATTTAAGGGAGAGTCGGAGATGTCATTGTCTAGGGCAGGGGGAGAGGGAGGGCGAGGAGGAGGAAGAAGAGGGCAAGGTTACATGGAGCACCTGCTTGAAAAGTTGAATCACCTGGATCAGCTGCAGAAAGATCAGGACAGCATCCCCGAGAAGATCAATGAAATCCACAAAATACTCCGCTTCTCTCCAGAGATGGTTGATAAACAGGTTGATGCTACGTTGATTCGGCTTCGTGCTTTATATACACGTGCCAAAGAACTTTGTGAGAGTGAAGTCAGTGCATCGTCTGCTTTGGTTGGACTATTGGATGGTTTGTTGCAATCTGGAACTTCAGCTGCCCAACGAAAAAAGATAGAAGTTGGTGAGCAGAAAAAGAAGAGGATGAAGTTTGATACAGATACTACACGATTCTCCTCTGCATCTATGAGGAGCCAACTTGACCAAGCTACAAACCTGAAAGGAGAACAGGTTTCAACTTCAGCTGAATTTGGAAATATCAGTTAGTTTTTGTATTTCAGCTGTTTGTGCTACAGCAACGCTGATGAAAAAAACACTTCTACTTTCCATGTGAAGACTTGTTAGTAACTTTCCTATGTGGTGTTTTAGTTTTAACAGGGTTGTTTAAAAAAAAAAAAA] [-] EMBL CA763335 [GATCTCCATCAATTTGTGCCTTGTTCACTCGTGCAAATCTGGTCAAATTCTTATTTAAGGGAGAGTCGGAGATGTCATTGTCTAGGGCAGGGGGAGAGGGAGGGCGAGGAGGAGGAAGAAGAGGGCAAGGTTACATGGAGCACCTGCTTGAAAAGTTGAATCACCTGGATCAGCTGCAGAAAGATCAGGACAGCATCCCCGAGAAGATCAATGAAATCCACAAAATACTCCGCTTCTCTCCAGAGATGGTTGATAAACAGGTTGATGCTACGTTGATTCGGCTTCGTGCTTTATATACACGTGCCAAAGAACTTTGTGAGAGTGAAGTCAGTGCATCGTCTGCTTTGGTTGGACTATTGGATGGTTTGTTGCAATCTGGAACTTCAGCTGCCCAACGAAAAAAGATAGAAGTTGGTGAGCAGAAAAAGAAGAGGATGAAGTTTGATACAGATACTACACGATTCTCCTCTGCATCTATGAGGAGCCAACTTGACCAAGCTACAAACCTGAAAGGAGAACAGGTTTCAACTTCAGCTGAATTTGGAAATATCAGTTAGTTTTTGTATTTCAGCTGTTTGTGCTACAGCAACGCTGATGAAAAAAACACTTCTACTTTCCATGTGAAGACTTGTTAGTAACTTTCCTATGTGGTGTTTTAGTTTTAACAGGGTTGTTTAAAAAAAAAAAAA] consensusID : consensus_13521#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 609 fasta sequence [TGGGTGAAGTGAAACACTGTTCAGATAAAGGANACCCAAAGATATGAGTTACTTGATGAGGACCACGGTGACGATGAAGAGAGGTGCCCAAAAGAAGTACAAGTTGCCTATGTCAAGATATTGATTCCATNTCCAAAGAGAGGGGATCCTTCCAGTGCCCCAAGATTTTGGCAGGTCGACAAGTGCTTACTGGTTTATCCTAGCAACAACAGCACTATATAGAGCTACTGTGTGCCTCTAATCGTAAGAGGAAATCTGACGATTATCTACTCTTGTTTGATGATGACGAGGAGGATGGAAATCTACCACCAAGAGCTGTGCCCGTTCTATAGAGTGGTTCCTCTCCCGGAGGCCACCCGCCAACGTGAAAATCTCAGTTGGATCCGTCTGTACCCCCGCCACGTGTTAGTGTGGTGAAGATAGGACGCTGTGAGAGGTGTCTGCCTGGACACATGTAGTAATTTTGTGTTTATCTGCACTTGTCCCAGCATCAGATTGTACTACCAAAGTGACTTCTAAGATGTCACAAGGTTCAGCGATCATGTAAATAGGTTGATTCAGTGTTGCTCTATAACACNAAATAAGTGATTTCCCCTTCGAAAAAAAAAA] [+] EMBL BM038154 [TGGGTGAAGTGAAACACTGTTCAGATAAAGGANACCCAAAGATATGAGTTACTTGATGAGGACCACGGTGACGATGAAGAGAGGTGCCCAAAAGAAGTACAAGTTGCCTATGTCAAGATATTGATTCCATNTCCAAAGAGAGGGGATCCTTCCAGTGCCCCAAGATTTTGGCAGGTCGACAAGTGCTTACTGGTTTATCCTAGCAACAACAGCACTATATAGAGCTACTGTGTGCCTCTAATCGTAAGAGGAAATCTGACGATTATCTACTCTTGTTTGATGATGACGAGGAGGATGGAAATCTACCACCAAGAGCTGTGCCCGTTCTATAGAGTGGTTCCTCTCCCGGAGGCCACCCGCCAACGTGAAAATCTCAGTTGGATCCGTCTGTACCCCCGCCACGTGTTAGTGTGGTGAAGATAGGACGCTGTGAGAGGTGTCTGCCTGGACACATGTAGTAATTTTGTGTTTATCTGCACTTGTCCCAGCATCAGATTGTACTACCAAAGTGACTTCTAAGATGTCACAAGGTTCAGCGATCATGTAAATAGGTTGATTCAGTGTTGCTCTATAACACNAAATAAGTGATTTCCCCTTCGAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13521#2 ------------------------------------------------------------ consensus_13521#3 ------------------------------------------------------------ consensus_13521#0 TTGTGTTTATAGCAGAAAATGCTTTCCTGATTCTCCCATCCGACTATGCTGTTCTGCACT 60 consensus_13521#1 ------------------------------------------------------------ consensus_13521#4 ------------------------------------------------------------ consensus_13521#2 ------------------------------------------------------------ consensus_13521#3 ------------------------------------------------------------ consensus_13521#0 GGCGCACGGCACCAAATAAAAGCCTCGGCTCGCCTCGAGCTGTCCCCCCATCCCCCAACT 120 consensus_13521#1 ---------------------------------------GAACCAGCGAGTGACCTTTTT 21 consensus_13521#4 ------------------------------------------------------------ consensus_13521#2 ---------------------------ACCCTCCGATTC---CTTTACCGAACCGTGGGG 30 consensus_13521#3 -----GATCTCCATCAATTTGTGCCTTGTTCACTCGTGCAAATCTGGTCAAATTCTTATT 55 consensus_13521#0 GGAGAGTAGTAGATCGATTCGATCC--ACCCTCCGATTC---CTTTACCGAACCGTGGGG 175 consensus_13521#1 TGGTGAAAGACCAGGATTTGAACCCTGGTCAGTAGCTTCCCAACAGAAGGCATTTACCAC 81 consensus_13521#4 ------------------------------------------------------------ consensus_13521#2 GAAATCCGCGCCGGGGATGTCGTCGTCGGTCGGAGGCGGAGGGGGAGGTGGCGCGGGCGG 90 consensus_13521#3 TAAGGGAGAGTCGGAGATGTCATTGTCTAGGGCAGGGGGAGAGGGAGG------GCGAGG 109 consensus_13521#0 GAAATCCGCGCCGGGGATGTCGTCGTCGGTCGGAGGCGGAGGGGGAGGTGGCGCGGGCGG 235 consensus_13521#1 CATGCTATACGCATGTTCGCTGTACTCTTGTTAAAGCACTCTAGTTTTTTATGTATATGA 141 consensus_13521#4 ---------------------------------------------------------TGG 3 * consensus_13521#2 CGGCGGCGGTGGCGGAGGAGCGGACATTGCTAGCCTGCTGGATAAGGCCAAGGAGCTGGA 150 consensus_13521#3 AGGAGGAAGAAGAGGGCAAGGTTACATGGAGCACCTGCTTGAAAAGTTGAATCACCTGGA 169 consensus_13521#0 CGGCGGCGGTGGCGGAGGAGCGGACATTGCGAGCCTGCTGGATAAGGCCAAGGAGCTGGA 295 consensus_13521#1 T-GTTTAGTGAAACATT-TGCAAACTCTGAGCATTAATTTGCACTA--TAATTGA-TGTT 196 consensus_13521#4 --GTGAAGTGAAACACTGTTCAGATAAAGGANACCCAAAGATATGAGTTACTTGA-TG-- 58 * * * * ** consensus_13521#2 CCAGCTGCGCAAGGAGCAGGACGAGGTGGTC-------ACCGAGATCAACAAGATGCA-- 201 consensus_13521#3 TCAGCTGCAGAAAGATCAGGACAGCATCCCC-------GAGAAGATCAATGAAATCCA-- 220 consensus_13521#0 CCAGCTGCGCAAGGAGCAGGACGAGGTGGTC-------ACCGAGATCAACAAGATGCA-- 346 consensus_13521#1 TGTTCCACATGTAAAATAATGTTACTTCCCCCTTTTGTAATAGGAAGTACAAGTTGCCTA 256 consensus_13521#4 AGGACCACGGTGACGATGAAGAGAGGTGCCC--------AAAAGAAGTACAAGTTGCCTA 110 * * * * ** * * * * consensus_13521#2 ---CAAGAAGATCCTCTCCTCTCCAGAGATGGTTGATAAACAGGTTGATGCTACGTTGAT 258 consensus_13521#3 ---CAAAATACTCCGCTTCTCTCCAGAGATGGTTGATAAACAGGTTGATGCTACGTTGAT 277 consensus_13521#0 ---CAAGAAGATCCTCTCCTCTCCAGAGATGGTTGATAAACAGGTTGATGCTACGTTGAT 403 consensus_13521#1 TGTCA-GATATT-ATTCCATTTCCAAAGAGAGGGGAT---CCTTCCAGTGCCCCAGATTT 311 consensus_13521#4 TGTCAAGATATTGATTCCATNTCCAAAGAGAGGGGAT---CCTTCCAGTGCCCCAAGATT 167 ** * * * **** *** * *** * *** * * consensus_13521#2 TCGGCTTCGTGCTTTATATACACGTGCCAAAGAACTTTGTGA--GAGTGAAGTCAGTGCA 316 consensus_13521#3 TCGGCTTCGTGCTTTATATACACGTGCCAAAGAACTTTGTGA--GAGTGAAGTCAGTGCA 335 consensus_13521#0 TCGGCTTCGTGCTTTATATACACGTGCCAAAGAACTTTGTGA--GAGTGAAGTCAGTGCA 461 consensus_13521#1 TGGGC---AGGGTCGACAAGT-CTTAGCTGTTTATCCTAGCA-CAACAGCACTATATAGA 366 consensus_13521#4 TTGGC---AGG-TCGACAAGTGCTTACTGGTTTATCCTAGCAACAACAGCACTATATAGA 223 * *** * * * * * * * * * * * * * * * consensus_13521#2 TCGTCTGCTTTGGTTGGACTATTGGATGGTTTGTTGCAATCTGGAACTTCAGCTGCACAA 376 consensus_13521#3 TCGTCTGCTTTGGTTGGACTATTGGATGGTTTGTTGCAATCTGGAACTTCAGCTGCCCAA 395 consensus_13521#0 TCGTCTGCTTTGGTTGGACTATTGGATGGTTTGTTGCAATCTGGAACTTCAGCTGCACAA 521 consensus_13521#1 GCTACTGT-TGCCTCTAATCGTAAGAGGAAATCTGACGATTATCTACTCTTGTTTGATGA 425 consensus_13521#4 GCTACTGTGTGCCTCTAATCGTAAGAGGAAATCTGACGATTATCTACTCTTGTTTGATGA 283 * *** * * * * ** * * * * ** *** * * * consensus_13521#2 CGA--AAAAAGATAGAAGTTGGTGAGCACAAAAAGAAGAGGATGAAGTCTGATACAGATA 434 consensus_13521#3 CGA--AAAAAGATAGAAGTTGGTGAGCAGAAAAAGAAGAGGATGAAGTTTGATACAGATA 453 consensus_13521#0 CGA--AAAAAGATAGAAGTTGGTGAGCAGAAAAAGAAGAGGATGAAGTCTGATACAGATA 579 consensus_13521#1 TGACGAGGAGGATGGAAATCT---ACCACAAAGAGCTGTGCC-GTTCTATAGAGTGGTTC 481 consensus_13521#4 TGACGAGGAGGATGGAAATCT---ACCACCAAGAGCTGTGCCCGTTCTATAGAGTGGTTC 340 ** * * *** *** * * ** ** ** * * * * * * * consensus_13521#2 CTA-CACGATTCTCCTCTGCATCTATGAGGAGC-CAACTTGACCAAGCTACAAACCTGAA 492 consensus_13521#3 CTA-CACGATTCTCCTCTGCATCTATGAGGAGC-CAACTTGACCAAGCTACAAACCTGAA 511 consensus_13521#0 CTA-CACGATTCTCCTCTGCATCTATGAGGAGC-CAACTTGACCAAGCTACAAACCTGAA 637 consensus_13521#1 CTCTCCCGGAGGGCCACCGGCA--GTGAAAATCTCAGTTGGATCCGTCTTTACCCCGGCC 539 consensus_13521#4 CTCTCCCGGAGGCCACCCGCCAACGTGAAAATCTCAGTTGGATCCGTCTGTACCCCCGCC 400 ** * ** * * * *** * * ** * ** * ** * ** * consensus_13521#2 AGGAGAACAGGTTGCAGCTAAGGTCAAATCAGACGAAGAAAAAGATGAATGGTTTGTGGT 552 consensus_13521#3 AGGAGAACAGGTTTCAACTTCAGCTGAATTTG--GAAATATCAGTTAGTT--TTTGTATT 567 consensus_13521#0 AGGAGAACAGGTTGCAGCTAAGGTCAAATCAGACGAAGAAAAAGATGAATGGTTTGTGGT 697 consensus_13521#1 A-GTGT-AGTGTG-TGAAGATAGGAG--TGTGA-GAG-TGTCTGCCTG-ACA-ATGTAGT 590 consensus_13521#4 ACGTGTTAGTGTGGTGAAGATAGGACGCTGTGA-GAGGTGTCTGCCTGGACACATGTAGT 459 * * * ** * * * ** * *** * consensus_13521#2 GAAGGTGATACATTTCGATAAGGAAACAAAA-GAATATGAGGTACTTGATGAGGAGCCAG 611 consensus_13521#3 TCAGCTGTT----TGTGCTACAGCAACGCTG-ATGAAAAAAACACTT----------CTA 612 consensus_13521#0 GAAGGTGATACATTTCGATAAGGAAACAAAA-GAATATGAGGTACTTGATGAGGAGCCAG 756 consensus_13521#1 AATTTTGT-TTTATCTGCACCTTGTCCGCAGCATGCAGATTGTACTAC--------CAAA 641 consensus_13521#4 AATTTTGTGTTTATCTGCAC-TTGTCC-CAGCAT-CAGATTGTACTAC--------CAAA 508 ** * * * * *** consensus_13521#2 GTGACGATGAAGAGAGTGCCCAAAAG---TATGAGATAAGT-CCAGGACTGTCATTTTGG 667 consensus_13521#3 CTTTCCATGTGAAGACT------------TGTTAGTAACTT-TCCTATGTGGTGTTTTAG 659 consensus_13521#0 GTGACGATGAAGAGAGTGCCCAAAAGAAGTACAAGTTGCCTATGTCAGATATTATTCCAT 816 consensus_13521#1 GTGACTTTTAAGATGTC------------CAAGGTTCAGCGATCATGTA-AATAGGTTGA 688 consensus_13521#4 GTGACTTCTAAGATGTCA-----------CAAGGTTCAGCGATCATGTA-AATAGGTTGA 556 * * * consensus_13521#2 TTTCTTGTTT----GCTTTTACTATAACAATCAGGTCATTTTTCAATATAT--------- 714 consensus_13521#3 TTT-TAACAG----GGTTGTTTAAAAAAAAAAAAA------------------------- 689 consensus_13521#0 TTCCAAAGAGAGGGGATCCTTCCAGTGCCCCAGATTTTGGGCAGGGTCGACAAGTCTTAG 876 consensus_13521#1 TTCAGTGTTG------CTGTATAACA-AAAATAAGTGATT-------------------- 721 consensus_13521#4 TTCAGTGTTG------CTCTATAACACNAAATAAGTGATTTCCCCTTCGAAAAAAAAAA- 609 ** * * consensus_13521#2 ------------------------------------------------------------ consensus_13521#3 ------------------------------------------------------------ consensus_13521#0 CTGTTTATCCTAGCACAACAGCACTATATAGAGCTACTGTTGCCTCTAATCGTAAGAGGA 936 consensus_13521#1 ------------------------------------------------------------ consensus_13521#4 ------------------------------------------------------------ consensus_13521#2 ------------------------------------------------------------ consensus_13521#3 ------------------------------------------------------------ consensus_13521#0 AATCTGACGATTATCTACTCTTGTTTGATGATGACGAGGAGGATGGAAATCTACCACAAA 996 consensus_13521#1 ------------------------------------------------------------ consensus_13521#4 ------------------------------------------------------------ consensus_13521#2 ------------------------------------------------------------ consensus_13521#3 ------------------------------------------------------------ consensus_13521#0 GAGCTGTGCCGTTCTATAGAGTGGTTCCTCTCCCGGAGGGCCACCGGCAGTGAAAATCTC 1056 consensus_13521#1 ------------------------------------------------------------ consensus_13521#4 ------------------------------------------------------------ consensus_13521#2 ------------------------------------------------------------ consensus_13521#3 ------------------------------------------------------------ consensus_13521#0 AGTTGGATCCGTCTTTACCCCGGCCAGTGTAGTGTGTGAAGATAGGAGTGTGAGAGTGTC 1116 consensus_13521#1 ------------------------------------------------------------ consensus_13521#4 ------------------------------------------------------------ consensus_13521#2 ------------------------------------------------------------ consensus_13521#3 ------------------------------------------------------------ consensus_13521#0 TGCCTGACAATGTAGTAATTTTGTTTTATCTGCACCTTGTCCGCAGCATGCAGATTGTAC 1176 consensus_13521#1 ------------------------------------------------------------ consensus_13521#4 ------------------------------------------------------------ consensus_13521#2 ------------------------------------------------------------ consensus_13521#3 ------------------------------------------------------------ consensus_13521#0 TACCAAAGTGACTTCTAAGATGTCCAAGGTTCAGCGATCATGTAAATAGGTTGATTCAGT 1236 consensus_13521#1 ------------------------------------------------------------ consensus_13521#4 ------------------------------------------------------------ consensus_13521#2 ------------------------------------------------------------ consensus_13521#3 ------------------------------------------------------------ consensus_13521#0 GTTGCTCTATAACAAAAATAAGTGATTTCCCCTTCGAAAAAAAAAACGCCGCACACCTTA 1296 consensus_13521#1 ------------------------------------------------------------ consensus_13521#4 ------------------------------------------------------------ consensus_13521#2 ------------------------------------------------------------ consensus_13521#3 ------------------------------------------------------------ consensus_13521#0 TCTGGCCTCTGCTTGGTGTGCTTCGAGTTATTGCAACGCAGGGCACTACAGTCGTATCGT 1356 consensus_13521#1 ------------------------------------------------------------ consensus_13521#4 ------------------------------------------------------------ consensus_13521#2 ------------------------------------------------------------ consensus_13521#3 ------------------------------------------------------------ consensus_13521#0 CATATTGTAATTGATGCCTTCGTTGCATTGGAAGATGACGCGGCATTTGTGCATTGCACC 1416 consensus_13521#1 ------------------------------------------------------------ consensus_13521#4 ------------------------------------------------------------ consensus_13521#2 ------------ consensus_13521#3 ------------ consensus_13521#0 AAAAAAAAAAGA 1428 consensus_13521#1 ------------ consensus_13521#4 ------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||