These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13528#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 2497 fasta sequence [CCCCCGTTGCGTTGGCCCCCCTCTCTCTTCGCCTCGCCCCCGCGCGGCCGCACCGCTCGCCTGAGATCCGCGTCGGCGCTCGCCGTCTCCGCCTCCGATCTCCACAGGGCGGGCGGAGGAGACCGCATAGGTGGGGGGGAGATGGCGGCGGAGGAGGGGGCGAGGTCGCCGACGAGGATGCTGGCGGAGGGGCACCTGCGGGTGGCCACCGGCGGGGGCGCGCCGGCCGACGGCGGGATCGCCGTCCGCCACCTCCCACACCACCACGCATCTAAGAG---AGGTGCTGGTGGGAAAAATGAACAATACAACCTTGAGGATGTAGATTCTGTACCATCTAAGATGTCGAACAAACTAGTTAATGGGAACAATAAGGTTCCTGCTACATTAGATGACTATAAAAGGCTTTTAGTTCCTGTAATTGAGGAGTACTTTAGTACAGGAGATGTGGAACTGGCAGCTTCTGAGTTAAGGAGTCTTGGATCTGATCAGTTCCACAGTTACTTTATCAAGAAGCTCATATCCATGGCAATGGATCGTCATGACAAAGAAAAAGAAATGGCGTCAATTCTGTTGTCTGCGTTGTATGCGGATCTACTAGGCTCTTCCAAGATGAGTGAAGGTTTTATGATGCTTCTTGAGTCAACAGAAGATCTATCTGTCGACATACCGGATGCTATTGATGTCTTGTCTGTTTTTGTTGCTCGTGCTGTTGTGGATGAAATACTGCCTCCTGTTTTCCTCACTCGAGCCAGAGCACTGCTTCCTGAATTTTCTAAAGGTATTGAAGTTCTGCAAGTTTCTGAGAAAAGCTACTTGTCAGCCCCCCATCATGCTGAGCTAGTTGAGCGCAAGT-GGGGTGGGAGCACTCACTTTACTGTGGAAGAGGCGAAAAGGAGAATCCAGGATATTCTGAAGGAGTATATTGAGAGTGGAGATATTGATGAAGCTTTTAGGTGTATAAGGGAGCTGGGCCTTCCATTTTTCCATCATGAGGTTGTTAAACGCGCTCTCACCTTGAGCATGGAGAATCTGTCATCACAGCCATTAATCCTGAAGCTGTTGAAGGAATCAACTGCAGGTTGCCTGATCAGTTCTAATCAAATGTCTAAGGGTTTTTGTCGGCTAGCAGAGAGTATTGATGATCTGAGCCTTGATATTCCTTCTGCCAAGATTCTCTTTGACAAGCTGGTTCTGACTGCTACATCTGAAGGATGGCTTGATGCTTCATTCACTACATCTTCTGCCCCTAATGAAGATATGCGAAATGCAAGTGGTGAAAAGATCAAGCATTTCAAAGAAGAATCTGGACACATAATCCAAGAGTATTTTCTCTCAGATGATGCCCCAGAACTCATTATAAGCCTTCAAGAGCTTTCTGCCCCAGAGTACAATCCTATCTTCCTCAAGAAGCTTATCACCCTCGCTATGGACAGAAAGAATAGGGAGAAGGAGATGGCTTCTGCCCTGCTTTCTTCACTCAGCTTGGAACTTTTCTCCACTGATGACATCATGAAGGGATTCATATTGCTCCTGCAGTCAGCAGAAGACACTGCCCTCGACATTGTGGATGCTCCCAGTGAACTTGCCCTCTTCCTTGCCAGGGCAGTTATTGATGAAGTTCTGATTCCACTGAATTTGGATGAGATCGGTAACAGGCTTCGCCCTAACAGCAGTGGTAGTCAAACTGTCCAGATGGCTCGTGCCCTTCTTGCTGCTCGCCACTCTGGTGAGAGGATACTGCGTTGCTGGGGTGGCGGCACTGGCTGGGCTGTAGAAGATGCGAAGGACAAGATCGCAAAGCTCCTTGAAGAATACAATACTGGCGGTGACTTGGGGGAGGCTTGCCAATGCATCCGTGACCTTGGAATGCCCTTCTTCAACCATGAAGTGGTGAAGAAAGCGCTTGTTATGGCAATGGAGAAGGAGAATGAAGCAAGGATCTTGGCTCTGCTACAGGAGTGCTTCGGTGAGGGGCTGATAACAATCAACCAGATGACATTAGGCTTCACTCGCGTCAAGGAAGGCCTCGATGATCTGATCCTCGACATCCCAAATGCACAGGAGAAGTTTGGAGCATATGTGGATCTCGCAACTGAACGTGGATGGCTGCTTCCACCCTTCGCCTAGGCGGTTAAACTTGATGAATCTTCTCAATGTACATCTCCACCCCTGCTGTCTTTAGCACCATACCAAAAGTTTTCCTGTTCCTAGTGTACTTGTTGTGTTACCGTATACCGGAGGATGATAGGTTGGTTGGCCGTGTTGGTACTTGTTGAGGTAGTGTTCATCATTGGTTTGGTTTGGGAGTTTATGCCCTGGGAGAGTTATGAATAACCATATCGTTTCAGGTTATGACATGCTATGCAATGAACAATAGAGCTGTTCATGACCAGTGGAATTTTTGTAATTAGCTGGCGATGGGCTTCCAGCTTCTGAAGCTCCGTCATTGTGAATGTGCTTGCCCATCTTTGCTGCTTAAATTTCAATTGTTAAGGGA] [+] EMBL AK068497 [CCCCCGTTGCGTTGGCCCCCCTCTCTCTTCGCCTCGCCCCCGCGCGGCCGCACCGCTCGCCTGAGATCCGCGTCGGCGCTCGCCGTCTCCGCCTCCGATCTCCACAGGGCGGGCGGAGGAGACCGCATAGGTGGGGGGGAGATGGCGGCGGAGGAGGGGGCGAGGTCGCCGACGAGGATGCTGGCGGAGGGGCACCTGCGGGTGGCCACCGGCGGGGGCGCGCCGGCCGACGGCGGGATCGCCGTCCGCCACCTCCCACACCACCACGCATCTAAGAG AGGTGCTGGTGGGAAAAATGAACAATACAACCTTGAGGATGTAGATTCTGTACCATCTAAGATGTCGAACAAACTAGTTAATGGGAACAATAAGGTTCCTGCTACATTAGATGACTATAAAAGGCTTTTAGTTCCTGTAATTGAGGAGTACTTTAGTACAGGAGATGTGGAACTGGCAGCTTCTGAGTTAAGGAGTCTTGGATCTGATCAGTTCCACAGTTACTTTATCAAGAAGCTCATATCCATGGCAATGGATCGTCATGACAAAGAAAAAGAAATGGCGTCAATTCTGTTGTCTGCGTTGTATGCGGATCTACTAGGCTCTTCCAAGATGAGTGAAGGTTTTATGATGCTTCTTGAGTCAACAGAAGATCTATCTGTCGACATACCGGATGCTATTGATGTCTTGTCTGTTTTTGTTGCTCGTGCTGTTGTGGATGAAATACTGCCTCCTGTTTTCCTCACTCGAGCCAGAGCACTGCTTCCTGAATTTTCTAAAGGTATTGAAGTTCTGCAAGTTTCTGAGAAAAGCTACTTGTCAGCCCCCCATCATGCTGAGCTAGTTGAGCGCAAGT GGGGTGGGAGCACTCACTTTACTGTGGAAGAGGCGAAAAGGAGAATCCAGGATATTCTGAAGGAGTATATTGAGAGTGGAGATATTGATGAAGCTTTTAGGTGTATAAGGGAGCTGGGCCTTCCATTTTTCCATCATGAGGTTGTTAAACGCGCTCTCACCTTGAGCATGGAGAATCTGTCATCACAGCCATTAATCCTGAAGCTGTTGAAGGAATCAACTGCAGGTTGCCTGATCAGTTCTAATCAAATGTCTAAGGGTTTTTGTCGGCTAGCAGAGAGTATTGATGATCTGAGCCTTGATATTCCTTCTGCCAAGATTCTCTTTGACAAGCTGGTTCTGACTGCTACATCTGAAGGATGGCTTGATGCTTCATTCACTACATCTTCTGCCCCTAATGAAGATATGCGAAATGCAAGTGGTGAAAAGATCAAGCATTTCAAAGAAGAATCTGGACACATAATCCAAGAGTATTTTCTCTCAGATGATGCCCCAGAACTCATTATAAGCCTTCAAGAGCTTTCTGCCCCAGAGTACAATCCTATCTTCCTCAAGAAGCTTATCACCCTCGCTATGGACAGAAAGAATAGGGAGAAGGAGATGGCTTCTGCCCTGCTTTCTTCACTCAGCTTGGAACTTTTCTCCACTGATGACATCATGAAGGGATTCATATTGCTCCTGCAGTCAGCAGAAGACACTGCCCTCGACATTGTGGATGCTCCCAGTGAACTTGCCCTCTTCCTTGCCAGGGCAGTTATTGATGAAGTTCTGATTCCACTGAATTTGGATGAGATCGGTAACAGGCTTCGCCCTAACAGCAGTGGTAGTCAAACTGTCCAGATGGCTCGTGCCCTTCTTGCTGCTCGCCACTCTGGTGAGAGGATACTGCGTTGCTGGGGTGGCGGCACTGGCTGGGCTGTAGAAGATGCGAAGGACAAGATCGCAAAGCTCCTTGAAGAATACAATACTGGCGGTGACTTGGGGGAGGCTTGCCAATGCATCCGTGACCTTGGAATGCCCTTCTTCAACCATGAAGTGGTGAAGAAAGCGCTTGTTATGGCAATGGAGAAGGAGAATGAAGCAAGGATCTTGGCTCTGCTACAGGAGTGCTTCGGTGAGGGGCTGATAACAATCAACCAGATGACATTAGGCTTCACTCGCGTCAAGGAAGGCCTCGATGATCTGATCCTCGACATCCCAAATGCACAGGAGAAGTTTGGAGCATATGTGGATCTCGCAACTGAACGTGGATGGCTGCTTCCACCCTTCGCCTAGGCGGTTAAACTTGATGAATCTTCTCAATGTACATCTCCACCCCTGCTGTCTTTAGCACCATACCAAAAGTTTTCCTGTTCCTAGTGTACTTGTTGTGTTACCGTATACCGGAGGATGATAGGTTGGTTGGCCGTGTTGGTACTTGTTGAGGTAGTGTTCATCATTGGTTTGGTTTGGGAGTTTATGCCCTGGGAGAGTTATGAATAACCATATCGTTTCAGGTTATGACATGCTATGCAATGAACAATAGAGCTGTTCATGACCAGTGGAATTTTTGTAATTAGCTGGCGATGGGCTTCCAGCTTCTGAAGCTCCGTCATTGTGAATGTGCTTGCCCATC ] [+] EMBL CB635742 [ GAGGCCGCGAGGTCGCCGACGAGGATGCTGGCGGAGGGGCACCTGCGGGTGGCCACCGGCGGGGGCGCGCCGGCCGACGGCGGGATCGCCGTCCGCCACCTCCCACACCACCACGCATCTAAGAGAGAAGGTGCTGGTGGGAAAAATGAACAATACAACCTTGAGGATGTAGATTCTGTACCATCTAAGATGTCGAACAAACTAGTTAATGGGAACAATAAGGTTCCTGCTACATTAGATGACTATAAAAGGCTTTTAGTTCCTGTAATTGAGGAGTACTTTAGTACAGGAGATGTGGAACTGGCAGCTTCTGAGTTAAGGAGTCTTGGATCTGATCAGTTCCACAGTTACTTTATCAAGAAGCTCATATCCATGGCAATGGATCGTCATGACAAAGAAAAAGAAATGGCGTCAATTCTGTTGTCTGCGTTGTATGCGGATCTACTAGGCTCTTCCAAGATGAGTGAAGGTTTTATGATGCTTCTTGAGTCAACAGAAGATCTATCTGTCGACATACCGGATGCTATTGATGTCTTGTCTGTTTTTGTTGCTCGTGCTGTTGTGGATGAAATACTGCCTCCTGTTTTCCTCACTCGAGCCAGAGCACTGCTTCCTGAATTTTCTAAAGGTATTGAAGTTCTGCAAGTTGCTGAGAAAAGCTACTTGTCAGCCCCCCATCATGCTGAGCTAGTTGAGCGCAAGTGGGGGTGGGAGCACTCACTTTACTGTGGAAGAGGCGAAAAGGAGAATCCAGGATATTCTGAAG ] [+] EMBL C72522 [ TGTTGCTCGTGCTGTTGTGGATGAAATACTGCCTCCTGTTTTCCTCACTCGAGCCAGAGCACTGCTTCCTNAATTTTCTAAAGGTATTGAAGTTCTGCAAGTTTCTGAGAAAAGCTACTTGTCAGCCCCCCATCATGCTGAGCTAGTTGAGCGCAAGT GGGGTGGGAGCACTCACTTTACTGTGGAAGAGGCGAAAAGGAGAATCCAGGATATTCTGAAGGAGTATATTGAGAGTGGAGATATTGATGAAGCTTTTAGGTNTATAAGGGAGCTGGTCCTTCCATTTTTCCATCATGAGGTTGTTAAACGNGCTCTCACCTTGAGCATGGAGAATCTGTCATCACAGCCATTAATCCTGANGCTTTTGAAGNAATC ] [+] EMBL AA750700 [ AGAATCTGTCATCACAGCCATTAATCCTGAAGCTGTTGAAGGAATCAACTGCAGGTTGCCTGATCAGTTCTAATCAAATGTCTAAGGGTTTTTGTCGGCTAGCAGAGAGTATTGATGATCTGAGCCTTGATATTCCTTCTGCCAAGATTCTCTTTGACAAGCTGGTTCTGACTGCTACATCTGAAGGATGGCTTGATGCTTCATTCACTACATCTTCTGCCCCT ] [+] EMBL CB654501 [ ATTGACGTTCTGAGCCTTGATATTCCTTCTGCCAAGATTCTCTTTGACAAGCTGGTTCTGACTGCTACATCTGAAGGACCGCTTGATGCTTCATTCACTACATCTTCTGCCCCTAATGAAGATATGCGAAATGCAAGTGGTGAAAAGATCAAGCATTTCAAAGAATAATCTGGACACATAATCCAAGAGTATTTTCTCTCAGATGATGTCCCAGAACTCATTATAAGCCTTCAAGAGCTTTCTGCCCCAGAGTACAATCCTATCTTCCTCAAGAAGCTTATCACCCTCGCTATGGACAGAAAGAATAGGGAGAAGGAGATGGCTTCTGCCCTGCTTTCTTCACTCAGCTTGGAACTTTTCTCCACTGATGACATCATGAAGGGATTCATATTGCTCCTGCAGTCAGCAGAAGACACTGCCCTCGACATTGTGGATGCTCCCAGTGAACTTGCCCTCTTCCTTGCCAGGGCAGTTATTGATGAAGTTCTGATTCCACTGAATTTGGATGAGATCGGTAACAGGCTTCGCCCTAACAGCAGTGGTAGTCAAACTGTCCAGATGGCTCGTGCCCTTCTTGCTGCTCGCCACTCTGGTGAGAGGATACTGCGTTGCTGGGGTGGCGGCACTGGCTGGGCTGTAGAAGATGCGAAGGACAAGATCGCAAAGCTCCTTGAAGAATACAATACTGGCGGTGACTTGGGGGAGGCTTGCCAATGCATCCGTGACCTTGGAA ] [-] EMBL CB656186 [ TCGCAAAGCTCCTTGAAGAATACAATACTGGCGGTGACTTGGGGGAGGCTTGCCAATGCATCCGTGACCTTGGAATGCCCTTCTTCAACCATGAAGTGGTGAAGAAAGCGCTTGTTATGGCAATGGAGAAGGAGAATGAAGCAAGGATCTTGGCTTTGCTACAGGAGTGCTTCGGTGAGGGGCTGATAACAATCAACCAGATGACATTAGGCTTCACTCGCGTCAAGGAAGGCCTCGATGATTTGATCCTCGACATCCCAAATGCACAGGAGAAGTTTGGAGCATATGTGGATCTCGCAACTGAACGTGGATGGCTGCTTCCCCCCTTCGCCTAGGCGGTTAAACTTGATGAATTTTCTCAATGTACATCTCCCCCCCTGCTGTTTTTAGCCCCATACCAAAAGTTTTCCTGTTCCTAGTGTACTTGTTGTGTTCCCGTATACCGGAGGATGATAGGTTGGTTGGCCGTGTTGGTACTTGTTGAGGTAGTGTTCATCATTGGTTTGGTTTGGGAGTTTATGCCCTGGGAGAGTTATGAATAACCATATCGTTTCAGGTTATGACATGCTATGCAATGAACAATAGAGCTGTTCATGACCAGTGGAATTTTTGTAATTAGCTGGCGATGGGCTTCCAGCTTTTGAAGCTCCGTCATTGTGAATGTGCTTGCCCATCTTTGCTGCTTAAATTTCAATTGTTAAGGGA] [+] EMBL CA764175 [ CCAATGCATCCGTGACCTTGGAATGCCCTTCTTCAACCATGAAGTGGTGAAGAAAGCGCTTGTTATGGCAATGGAGAAGGAGAATGAAGCAAGGATCTTGGCTCTGCTACAGGAGTGCTTCGGTGAGGGGCTGATAACAATCAACCAGATGACATTAGGCTTCACTCGCGTCAAGGAAGGCCTCGATGATCTGATCCTCGACATCCCAAATGCACAGGAGAAGTTTGGAGCATATGTGGATCTCGCAACTGAACGTGGATGGCTGCTTCCACCCTTCGCCTAGGCGGTTAAACTTGATGAATCTTCTCAATGTACATCTCCACCCCTGCTGTCTTTAGCACCATACCAAAAGTTTTCCTGTTCCTAGTGTACTTGTTGTGTTACCGTATACCGGAGGATGATAGGTTGGTTGGCCGTGTTGGTACTTGTTGAGGTAGTGTTCATCATTGGTTTGGTTTGGGAGTTTATGCCCTGGGAGAGTTATGAATAACCATATCGTTTCAGGTTATGACATGCTATGCAATGAACAATAGAGCTGTTCATGACCAGTGGAATTTTTGTAATTAGCTGGCGATGGGCTTCCAGCTTCTGAAGCTNCGTCATTGTGAATGTGCTTGCCCATCTTTGC ] [-] EMBL OSS3865A [ TTGTG TACCGTATACCGGAGGATGATAGGTTGGTTGGCCGTGTTGGTACTTGTTGAGGTAGTGTTCATCATTGGTTTGGTTTGGGAGTTTATGCCCTGGGAGAGTTATGAATAACCATATCGTTTCAGGTTATGACATGCTATGCAATGAACAATAGAGCTGTTCATGACCAGTGGAATTTTTGTAATTAGCTGGCGATGGGCTTCCAGCTTCTGA ] consensusID : consensus_13528#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 774 fasta sequence [CCAGATGGCTCGTGCCCTTCTTGCTGCTCGCCACTCTGGTGAGAGGATACTGCGTTGCTGGGGTGGCGGCACTGGCTGGGCTGTAGAAGATGCGAAGGACAAGATCGCAAAGCTCCTTGAAGAATACAATACTGGCGGTGACTTGGGGGAGGCTTGCCAATGCATCCGTGACCTTGGAATGCCCTTCTTCAACCATGAAGTGGTGAAGAAAGCGCTTGTTATGGCAATGGAGAAGGAGAATGAAGCAAGGATCTTGGCTCTGCTACAGGAGTGCTTCGGTGAGGGGCT-GATAACAATCAACCAGATGACATTAGGCTTCACTCGCGTCAAGGAAGGCCTCGATGATCTGATCCTCGACATCCCAAATGCACAGGAGAAGTTTGGAGCATATGTGGATCTCGCAACTGAACGTGGATGGCTGCTTCCACCCTTCGCCTAGGCGGTTAAACTTGATGAATCTTCTCAATGTACATCTCCACCCCTGCTGTCTTTAGCACCATACCAAAAGTTTTCCTGTTCCTAGTGTACTTGTTGTGTTACCGTATACCGGAGGATGATAGGTTGGTTGGCCGTGTTGGTACTTGTTGAGGTAGTGTTCATCATTGGTTTGGTTTGGGAGTTTATGCCCTGGGAGAGTTATGAATAACCATATCGTTTCAGGTTATGACATGCTATGCAATGAACAATAGAGCTGTTCATGACCAGTGGAATTTTTGTAATTAGCTGGCGAAAGGGTTCCAGCTTCTGAAGCTCCGTCATTGGAAAAATATAGGA] [-] EMBL CB635743 [CCAGATGGCTCGTGCCCTTCTTGCTGCTCGCCACTCTGGTGAGAGGATACTGCGTTGCTGGGGTGGCGGCACTGGCTGGGCTGTAGAAGATGCGAAGGACAAGATCGCAAAGCTCCTTGAAGAATACAATACTGGCGGTGACTTGGGGGAGGCTTGCCAATGCATCCGTGACCTTGGAATGCCCTTCTTCAACCATGAAGTGGTGAAGAAAGCGCTTGTTATGGCAATGGAGAAGGAGAATGAAGCAAGGATCTTGGCTCTGCTACAGGAGTGCTTCGGTGAGGGGCT GATAACAATCAACCAGATGACATTAGGCTTCACTCGCGTCAAGGAAGGCCTCGATGATCTGATCCTCGACATCCCAAATGCACAGGAGAAGTTTGGAGCATATGTGGATCTCGCAACTGAACGTGGATGGCTGCTTCCACCCTTCGCCTAGGCGGTTAAACTTGATGAATCTTCTCAATGTACATCTCCACCCCTGCTGTCTTTAGCACCATACCAAAAGTTTTCCTGTTCCTAGTGTACTTGTTGTGTTACCGTATACCGGAGGATGATAGGTTGGTTGGCCGTGTTGGTACTTGTTGAGGTAGTGTTCATCATTGGTTTGGTTTGGGAGTTTATGCCCTGGGAGAGTTATGAATAACCATATCGTTTCAGGTTATGACATGCTATGCAATGAACAATAGAGCTGTTCATGACCAGTGGAATTTTTGTAATTAGCTGGCGAAAGGGTTCCAGCTTCTGAAGCTCCGTCATTGGAAAAATATAGGA] [-] EMBL AA753274 [ gagngaaTGGTGTGGNGGCGCATGNT GGCTGTAG AGATG GA GAC ANATCGC ANG TCCTTGAGGAA ACAATA TTGC GTGA NTGGGGGNGG TTGCCAANGCATCCGNGACC TGGGATGCCNTTNTTCAACCATGAAGTGG GAAGAAAGCGCTTGTTATGCCAATGGAGAAGGAGAATGAAGCAAGGATCTTGGTTCTGCTACAGGAGTGCTTCGGTGAGGGNCTCGATAACAATCAACCAGATGACATTAGGCTTCACTCGCGTCAAGGAAGGCNTCGATGATCTGATCCTCGACATCCCAAATGCACAGGAGAAGTTTGGAGCATATGTGGATCTCGCAACTGAACGTGGATGGNTGCTTCCACCNTTCGCCTAGGCGGTTAAACTTGATGAATNTTNTCAATGTACATCTCCACCCCTGCTGTCTTTAGCACCATACCAAAAGTTTTCCTGTTCCTAGTGTACTTGTTGTGTTACCGTATACCGGAGGATGATAGGTTGGTTGGCCGTGTTGGTACTTGTTGAGGTAGTGTTCATCATTGGTTTGGTTTGGGAGTTTATGCCCTGGGAGAGTTATGAATAAaaaaaaaa ] [-] EMBL CB654502 [ CACTGGCTGGGCTGTAGAAGATGCGAAGGACAAGATCGCAAAGCTCCTTGAAGAATACAATACTGGCGGTGACTTGGGGGAGGCTTGCCAATGCATCCGTGACCTTGGAATGCCCTTCTTCAACCATGAAGTGGTGAAGAAAGCGCTTGTTATGGCAATGGAGAAGGAGAATGAAGCAAGGATCTTGGCTCTGCTACAGGAGTGCTTCGGTGAGGGGCT GATAACAATCAACCAGATGACATTAGGCTTCACTCGCGTCAAGGAAGGCCTCGATGATCTGATCCTCGACATCCCAAATGCACAGGAGAAGTTTGGAGCATATGTGGATCTCGCAACTGAACGTGGATGGCTGCTTCCACCCTTCGCCTAGGCGGTTAAACTTGATGAATTTTCTCAATGTACATCTCCACCCCTGCTGTCTTTAGCACCATACCAAAAGTTTTCCTGTTCCTAGTGTACTTGTTGTGTTACCGTATACCGGAGGATGATAGGTTGGTTGGCCGTGTTGGTACTTGTTGAGGTAGTGTTCATCATTGGTTTGGTTTGGGAGTTTATGCCCTGGGAGAGTTATGAATAACCATATCGTTTCAGATGAGGACATGCTATGCAATGA ] consensusID : consensus_13528#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 486 fasta sequence [GATCCCGGGNGCGGATTGGCAGGGCATGGGAAGNGATGAACCAGGATTTGTTTTNNACAGGATGTTCGGGGGGGGGTGATACATCACCAGTGACATTGGGTTCATTTGCNTCAAGGAGGCCTCGATGATNTGATCNTTGAATCCCAAATGCACAGGAGAAGTTTGGAGCATATGTGGATNTCGCAACTGAACGTGGATGGCTGCTTCCACCCTTCGCCTAGGCGGTTAAACTTGATGAATCTTCTCAATGTACATCTCCACCCCTGCTGTCTTTAGCACCATACCAAAAGTTTTCCTGTTCCTAGTGTACTTGTTGTGTTACCGTATACCGGAGGATGATAGGTTGGTTGGCCGTGTTGGTANTTGTTGAGGTAGTGTTCATCATTGGTTTGGTTTGGGAGTTTATGCCCTGGGAGAGTTATGAATAACCATATCGTTTCAGGTTATGACATGCTATGCAATGAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL AA752127 [GATCCCGGGNGCGGATTGGCAGGGCATGGGAAGNGATGAACCAGGATTTGTTTTNNACAGGATGTTCGGGGGGGGGTGATACATCACCAGTGACATTGGGTTCATTTGCNTCAAGGAGGCCTCGATGATNTGATCNTTGAATCCCAAATGCACAGGAGAAGTTTGGAGCATATGTGGATNTCGCAACTGAACGTGGATGGCTGCTTCCACCCTTCGCCTAGGCGGTTAAACTTGATGAATCTTCTCAATGTACATCTCCACCCCTGCTGTCTTTAGCACCATACCAAAAGTTTTCCTGTTCCTAGTGTACTTGTTGTGTTACCGTATACCGGAGGATGATAGGTTGGTTGGCCGTGTTGGTANTTGTTGAGGTAGTGTTCATCATTGGTTTGGTTTGGGAGTTTATGCCCTGGGAGAGTTATGAATAACCATATCGTTTCAGGTTATGACATGCTATGCAATGAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_13528#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 271 fasta sequence [NANGTGGAGGTGTGTGTGCNGANGTGTCGGCCGGACTGAGGANTGGCTGTGCGGAGGNGGCACCTGCGGNTGGGCCACCGTCGGGGGCGCGCCGNCCGACGGGGTNATCGCCCTGTCCACCTCCCACACCACCACGCATCTAAGAGAGAAGGTTGCTGGTGNGAAAAATGAACAATACAACCTTGAGGNNTGTAGATTCTGTACCATCTAAGATGTCGGAACAAACTAGGTTNNATGGGGAACAATAAGGGTTCCTNGCTACATTGAGGAT] [+] EMBL AU063457 [NANGTGGAGGTGTGTGTGCNGANGTGTCGGCCGGACTGAGGANTGGCTGTGCGGAGGNGGCACCTGCGGNTGGGCCACCGTCGGGGGCGCGCCGNCCGACGGGGTNATCGCCCTGTCCACCTCCCACACCACCACGCATCTAAGAGAGAAGGTTGCTGGTGNGAAAAATGAACAATACAACCTTGAGGNNTGTAGATTCTGTACCATCTAAGATGTCGGAACAAACTAGGTTNNATGGGGAACAATAAGGGTTCCTNGCTACATTGAGGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13528#1 ------------------------------------------------------------ consensus_13528#2 ------------------------------------------------------------ consensus_13528#0 CCCCCGTTGCGTTGGCCCCCCTCTCTCTTCGCCTCGCCCCCGCGCGGCCGCACCGCTCGC 60 consensus_13528#3 ------------------------------------------------------------ consensus_13528#1 ------------------------------------------------------------ consensus_13528#2 ------------------------------------------------------------ consensus_13528#0 CTGAGATCCGCGTCGGCGCTCGCCGTCTCCGCCTCCGATCTCCACAGGGCGGGCGGAGGA 120 consensus_13528#3 ------------------------------------------------------------ consensus_13528#1 ------------------------------------------------------------ consensus_13528#2 ------------------------------------------------------------ consensus_13528#0 GACCGCATAGGTGGGGGGGAGATGGCGGCGGAGGAGGGGGCGAGGTCGCCGACGAGGATG 180 consensus_13528#3 ------------------------------------------------------------ consensus_13528#1 ------------------------------------------------------------ consensus_13528#2 ------------------------------------------------------------ consensus_13528#0 CTGGCGGAGGGGCACCTGCGGGTGGCCACCGGCGGGGGCGCGCCGGCCGACGGCGGGATC 240 consensus_13528#3 ------------------------------------------------------------ consensus_13528#1 ------------------------------------------------------------ consensus_13528#2 ------------------------------------------------------------ consensus_13528#0 GCCGTCCGCCACCTCCCACACCACCACGCATCTAAGAGAGGTGCTGGTGGGAAAAATGAA 300 consensus_13528#3 ------------------------------------------------------------ consensus_13528#1 ------------------------------------------------------------ consensus_13528#2 ------------------------------------------------------------ consensus_13528#0 CAATACAACCTTGAGGATGTAGATTCTGTACCATCTAAGATGTCGAACAAACTAGTTAAT 360 consensus_13528#3 ------------------------------------------------------------ consensus_13528#1 ------------------------------------------------------------ consensus_13528#2 ------------------------------------------------------------ consensus_13528#0 GGGAACAATAAGGTTCCTGCTACATTAGATGACTATAAAAGGCTTTTAGTTCCTGTAATT 420 consensus_13528#3 ------------------------------------------------------------ consensus_13528#1 ------------------------------------------------------------ consensus_13528#2 ------------------------------------------------------------ consensus_13528#0 GAGGAGTACTTTAGTACAGGAGATGTGGAACTGGCAGCTTCTGAGTTAAGGAGTCTTGGA 480 consensus_13528#3 ------------------------------------------------------------ consensus_13528#1 ------------------------------------------------------------ consensus_13528#2 ------------------------------------------------------------ consensus_13528#0 TCTGATCAGTTCCACAGTTACTTTATCAAGAAGCTCATATCCATGGCAATGGATCGTCAT 540 consensus_13528#3 ------------------------------------------------------------ consensus_13528#1 ------------------------------------------------------------ consensus_13528#2 ------------------------------------------------------------ consensus_13528#0 GACAAAGAAAAAGAAATGGCGTCAATTCTGTTGTCTGCGTTGTATGCGGATCTACTAGGC 600 consensus_13528#3 ------------------------------------------------------------ consensus_13528#1 ------------------------------------------------------------ consensus_13528#2 ------------------------------------------------------------ consensus_13528#0 TCTTCCAAGATGAGTGAAGGTTTTATGATGCTTCTTGAGTCAACAGAAGATCTATCTGTC 660 consensus_13528#3 ------------------------------------------------------------ consensus_13528#1 ------------------------------------------------------------ consensus_13528#2 ------------------------------------------------------------ consensus_13528#0 GACATACCGGATGCTATTGATGTCTTGTCTGTTTTTGTTGCTCGTGCTGTTGTGGATGAA 720 consensus_13528#3 ------------------------------------------------------------ consensus_13528#1 ------------------------------------------------------------ consensus_13528#2 ------------------------------------------------------------ consensus_13528#0 ATACTGCCTCCTGTTTTCCTCACTCGAGCCAGAGCACTGCTTCCTGAATTTTCTAAAGGT 780 consensus_13528#3 ------------------------------------------------------------ consensus_13528#1 ------------------------------------------------------------ consensus_13528#2 ------------------------------------------------------------ consensus_13528#0 ATTGAAGTTCTGCAAGTTTCTGAGAAAAGCTACTTGTCAGCCCCCCATCATGCTGAGCTA 840 consensus_13528#3 ------------------------------------------------------------ consensus_13528#1 ------------------------------------------------------------ consensus_13528#2 ------------------------------------------------------------ consensus_13528#0 GTTGAGCGCAAGTGGGGTGGGAGCACTCACTTTACTGTGGAAGAGGCGAAAAGGAGAATC 900 consensus_13528#3 ------------------------------------------------------------ consensus_13528#1 ------------------------------------------------------------ consensus_13528#2 ------------------------------------------------------------ consensus_13528#0 CAGGATATTCTGAAGGAGTATATTGAGAGTGGAGATATTGATGAAGCTTTTAGGTGTATA 960 consensus_13528#3 ------------------------------------------------------------ consensus_13528#1 ------------------------------------------------------------ consensus_13528#2 ------------------------------------------------------------ consensus_13528#0 AGGGAGCTGGGCCTTCCATTTTTCCATCATGAGGTTGTTAAACGCGCTCTCACCTTGAGC 1020 consensus_13528#3 ------------------------------------------------------------ consensus_13528#1 ------------------------------------------------------------ consensus_13528#2 ------------------------------------------------------------ consensus_13528#0 ATGGAGAATCTGTCATCACAGCCATTAATCCTGAAGCTGTTGAAGGAATCAACTGCAGGT 1080 consensus_13528#3 ------------------------------------------------------------ consensus_13528#1 ------------------------------------------------------------ consensus_13528#2 ------------------------------------------------------------ consensus_13528#0 TGCCTGATCAGTTCTAATCAAATGTCTAAGGGTTTTTGTCGGCTAGCAGAGAGTATTGAT 1140 consensus_13528#3 ------------------------------------------------------------ consensus_13528#1 ------------------------------------------------------------ consensus_13528#2 ------------------------------------------------------------ consensus_13528#0 GATCTGAGCCTTGATATTCCTTCTGCCAAGATTCTCTTTGACAAGCTGGTTCTGACTGCT 1200 consensus_13528#3 ------------------------------------------------------------ consensus_13528#1 ------------------------------------------------------------ consensus_13528#2 ------------------------------------------------------------ consensus_13528#0 ACATCTGAAGGATGGCTTGATGCTTCATTCACTACATCTTCTGCCCCTAATGAAGATATG 1260 consensus_13528#3 ------------------------------------------------------------ consensus_13528#1 ------------------------------------------------------------ consensus_13528#2 ------------------------------------------------------------ consensus_13528#0 CGAAATGCAAGTGGTGAAAAGATCAAGCATTTCAAAGAAGAATCTGGACACATAATCCAA 1320 consensus_13528#3 ------------------------------------------------------------ consensus_13528#1 ------------------------------------------------------------ consensus_13528#2 ------------------------------------------------------------ consensus_13528#0 GAGTATTTTCTCTCAGATGATGCCCCAGAACTCATTATAAGCCTTCAAGAGCTTTCTGCC 1380 consensus_13528#3 ------------------------------------------------------------ consensus_13528#1 ------------------------------------------------------------ consensus_13528#2 ------------------------------------------------------------ consensus_13528#0 CCAGAGTACAATCCTATCTTCCTCAAGAAGCTTATCACCCTCGCTATGGACAGAAAGAAT 1440 consensus_13528#3 ------------------------------------------------------------ consensus_13528#1 ------------------------------------------------------------ consensus_13528#2 ------------------------------------------------------------ consensus_13528#0 AGGGAGAAGGAGATGGCTTCTGCCCTGCTTTCTTCACTCAGCTTGGAACTTTTCTCCACT 1500 consensus_13528#3 ------------------------------------------------------------ consensus_13528#1 ------------------------------------------------------------ consensus_13528#2 ------------------------------------------------------------ consensus_13528#0 GATGACATCATGAAGGGATTCATATTGCTCCTGCAGTCAGCAGAAGACACTGCCCTCGAC 1560 consensus_13528#3 ------------------------------------------------------------ consensus_13528#1 ------------------------------------------------------------ consensus_13528#2 ------------------------------------------------------------ consensus_13528#0 ATTGTGGATGCTCCCAGTGAACTTGCCCTCTTCCTTGCCAGGGCAGTTATTGATGAAGTT 1620 consensus_13528#3 ------------------------------------------------------------ consensus_13528#1 ------------------------------------------------------------ consensus_13528#2 ------------------------------------------------------------ consensus_13528#0 CTGATTCCACTGAATTTGGATGAGATCGGTAACAGGCTTCGCCCTAACAGCAGTGGTAGT 1680 consensus_13528#3 ------------------------------------------------------------ consensus_13528#1 --------CCAGATGGCTCGTGCCCTTCTTGCTGCTCGCCACTCTGGTGAGAGGATACTG 52 consensus_13528#2 ------------------------------------------------------------ consensus_13528#0 CAAACTGTCCAGATGGCTCGTGCCCTTCTTGCTGCTCGCCACTCTGGTGAGAGGATACTG 1740 consensus_13528#3 ------------------------------------------------------------ consensus_13528#1 CGTTGCTGGGGTGGCGGCACTGGCTGGGCTGTAGAAGATGCGAAGGACAAGATCGCAAAG 112 consensus_13528#2 ------------------------------------------------------------ consensus_13528#0 CGTTGCTGGGGTGGCGGCACTGGCTGGGCTGTAGAAGATGCGAAGGACAAGATCGCAAAG 1800 consensus_13528#3 ------------------------------------------------------------ consensus_13528#1 CTCCTTGAAGAATACAATACTGGCGGTGACTTGGGGGAGGCTTGCCAATGCATCCGTGAC 172 consensus_13528#2 ------------------------------------------------------------ consensus_13528#0 CTCCTTGAAGAATACAATACTGGCGGTGACTTGGGGGAGGCTTGCCAATGCATCCGTGAC 1860 consensus_13528#3 ------------------------------------------------------------ consensus_13528#1 CTTGGAATGCCCTTCTTCAACCATGAAGTGGTGAAGAAAGCGCTTGTTATGGCAATGGAG 232 consensus_13528#2 -----------------------------GATCCCGGGNGCGGAT----TGGCAGGGCAT 27 consensus_13528#0 CTTGGAATGCCCTTCTTCAACCATGAAGTGGTGAAGAAAGCGCTTGTTATGGCAATGGAG 1920 consensus_13528#3 -------------------------------------------------------NANGT 5 consensus_13528#1 AAGGAGAATGAAGCAAGGATCTTGGCTCTGCTACAGGAGTGCTTCGGTGAGGGGCTGATA 292 consensus_13528#2 GGGAAGNGATGAACCAGGATTTG---TTTTNNACAGGA-TG-TTCGG-GGGGGGGTGATA 81 consensus_13528#0 AAGGAGAATGAAGCAAGGATCTTGGCTCTGCTACAGGAGTGCTTCGGTGAGGGGCTGATA 1980 consensus_13528#3 GGAGGTGTGTGTGCNGANGTGTCGGCCGGACTG-AGGANTGGCT--GTGCGGAGGNGGCA 62 * * * **** ** * * * ** * * * consensus_13528#1 ACAATCAACCAGATGACATTAGGC-TTCACTCGCGTCAAGGAAGGCCTCGATGATCTGAT 351 consensus_13528#2 C--ATCA-CCAG-TGACATTGGG--TTCATTTGCNTCAAGGA-GGCCTCGATGATNTGAT 134 consensus_13528#0 ACAATCAACCAGATGACATTAGGC-TTCACTCGCGTCAAGGAAGGCCTCGATGATCTGAT 2039 consensus_13528#3 CCTGCGGNTGGGCCACCGTCGGGGGCGCGCCGNCCGACGGGGTNATCGCCCTGTCCACCT 122 * * * ** * * ** * * ** * consensus_13528#1 CCTCGAC-ATCCCAAATGCACAGGAGAAGTTTGGAGCATATGTGGATCTCGCAACTGAAC 410 consensus_13528#2 CNTTGA--ATCCCAAATGCACAGGAGAAGTTTGGAGCATATGTGGATNTCGCAACTGAAC 192 consensus_13528#0 CCTCGAC-ATCCCAAATGCACAGGAGAAGTTTGGAGCATATGTGGATCTCGCAACTGAAC 2098 consensus_13528#3 CCCACACCACCACGCATCTAAGAGAGAAGGTTGCTG-GTGNGAAAAATGAACAATACAAC 181 * * * * * ** * ****** *** * * * * *** *** consensus_13528#1 GTGGATGGCTGCTTCCACCCT-TCGCCTAGGCGGTTAAACTTGATGAATCTTCTCAATGT 469 consensus_13528#2 GTGGATGGCTGCTTCCACCCT-TCGCCTAGGCGGTTAAACTTGATGAATCTTCTCAATGT 251 consensus_13528#0 GTGGATGGCTGCTTCCACCCT-TCGCCTAGGCGGTTAAACTTGATGAATCTTCTCAATGT 2157 consensus_13528#3 CTTGAGGNNTGTAGATTCTGTACCATCTAAGATGTCGGAACAAACTAGGTTNNATGGGGA 241 * ** * ** * * * *** * ** * * * * * consensus_13528#1 ACATCTCCA--CCCCTGCTGTCTTTAGCACCATACCAAAAGTTTTCCTGTTCCTAGTGTA 527 consensus_13528#2 ACATCTCCA--CCCCTGCTGTCTTTAGCACCATACCAAAAGTTTTCCTGTTCCTAGTGTA 309 consensus_13528#0 ACATCTCCA--CCCCTGCTGTCTTTAGCACCATACCAAAAGTTTTCCTGTTCCTAGTGTA 2215 consensus_13528#3 ACAATAAGGGTTCCTNGCTACATTGAGGAT------------------------------ 271 *** ** *** ** ** * consensus_13528#1 CTTGTTGTGTTACCGTATACCGGAGGATGATAGGTTGGTTGGCCGTGTTGGTACTTGTTG 587 consensus_13528#2 CTTGTTGTGTTACCGTATACCGGAGGATGATAGGTTGGTTGGCCGTGTTGGTANTTGTTG 369 consensus_13528#0 CTTGTTGTGTTACCGTATACCGGAGGATGATAGGTTGGTTGGCCGTGTTGGTACTTGTTG 2275 consensus_13528#3 ------------------------------------------------------------ consensus_13528#1 AGGTAGTGTTCATCATTGGTTTGGTTTGGGAGTTTATGCCCTGGGAGAGTTATGAATAAC 647 consensus_13528#2 AGGTAGTGTTCATCATTGGTTTGGTTTGGGAGTTTATGCCCTGGGAGAGTTATGAATAAC 429 consensus_13528#0 AGGTAGTGTTCATCATTGGTTTGGTTTGGGAGTTTATGCCCTGGGAGAGTTATGAATAAC 2335 consensus_13528#3 ------------------------------------------------------------ consensus_13528#1 CATATCGTTTCAGGTTATGACATGCTATGCAATGAACAATAGAGCTGTTCATGACCAGTG 707 consensus_13528#2 CATATCGTTTCAGGTTATGACATGCTATGCAATGAAAAAAAAAAAAAAAAAAAAAAA--- 486 consensus_13528#0 CATATCGTTTCAGGTTATGACATGCTATGCAATGAACAATAGAGCTGTTCATGACCAGTG 2395 consensus_13528#3 ------------------------------------------------------------ consensus_13528#1 GAATTTTTGTAATTAGCTGGCGAAAGGGTTCCAGCTTCTGAAGCTCCGTCATTGGAAAAA 767 consensus_13528#2 ------------------------------------------------------------ consensus_13528#0 GAATTTTTGTAATTAGCTGGCGATGGGCTTCCAGCTTCTGAAGCTCCGTCATTGTGAATG 2455 consensus_13528#3 ------------------------------------------------------------ consensus_13528#1 TATAGGA----------------------------------- 774 consensus_13528#2 ------------------------------------------ consensus_13528#0 TGCTTGCCCATCTTTGCTGCTTAAATTTCAATTGTTAAGGGA 2497 consensus_13528#3 ------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||