These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13532#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 2082 fasta sequence [CGAGCACTCGAGCTGAGAGCAAAGAAGCGCATCCTTCTCATGGCGGCCTCCTCGTCGTCGGCGGCGGCGGCGGCGTTGTCGCCGGCGATCTCTCTTCACCTGCTCCGGCCGCTCCCGTGCAGAGCCGTACTCCTGTCCAGGCAACGGAGGCCATTTCCATCGCCAAGAGCTGGCTGCCTGGCGGCGGTAAGAGCTCAGCGGCGGTGGCTCCGGTCGCCGGAGATCGGCCGGTGGAGGAGGCGCGGGGGCTACGCCTGCCTCTCCTTCAACTCCGGCAATAAGCCGCCTCCGCCTTCCAGTGAGAATTCAGACGAATGGCCAATCCTTCGCCGATGGGATGTGCCGTGGGAGTGGCAGACGGTGGTGCTCACCATGGTGGGCTGTGGAGTA----AGCTTTGTTCTGACAGGATTGGTTGAGCAATCGGTTTTGACGTATGTGGGGTTTAGAGCTGTCGAGGCAACGGTAGATCAGAAGGCAGAAATACTTTTCCTTGGACAACTTAGCGTGACAGCAGTTGTGCTGGGTGTTGTATATGGCATCACCAATACCTTCCGACCACTGCCAGATGATATATTTCGTTATGATATTAAAGAACCATTCAAGCTTCAAAATGGCTGGCTTCTGTGGGCTGGAGTTGGTCTCTTTGGCGCTATAATTT-CTATTGCTTTAGTTGGGGTTGCTATGACTTATCTGAATGGTGAACCTCCAGAAAGAGAGGTCAGGCCTTTTACATACTGTACTATATAGATTTTTCTCAGGCCATACAATTTTATTCCCATTTAATTAATTATTACCCCTCAATCTTTAGTTTTTAACTCACATTGTTTTAATCCCATTCATCATTAACCTCTAATTCAATTTGTTCAGCAAGAAAAAAAACACATCTTGGACCGCTTAATATTCATTAAACAATAACCTATAACAATATGCCAAATGGAGCAATTCATGCAATTTGTAATAGACCATTGTCTTTGATTACCCAACCCTTTTGGCTTGCCTTGCATGACCCTAGGTCTTATCTAATCACAATCTTCTCATGTATGGACTGGATTAAGCTGATTGTGATTAAACAATGACAACTCAAGGCTATCATATGGTCACTTGTGCAAGATTCAGATGGTAGGGAAGCCAGAAAGATAGGTTTTCCATGAGTAGCATAGGAATTAGCAAATATGCCTATTCTCTTTGGTTTGAGATGAGAC--AGCATAATTAGGAACAGTTTGCGGCATAATTAAGATGGAATGCACCCTTTGATAAAGTGAAGCTTCATACACAAGGTTTATTCAATGCTTTGACTGACAAGCTTATGTGGTAAGGCCTCACTTTACATTGATAGGGGCTTACGCTTTTCCAAATTGAATCTCAACATGTTTTGTGTACTTACCTCCTGTTATACTGATTACCTTTTTTCAGTGTGCTGTTTCTTGAGTCCTGATTGCTGATCTATTTCTCTGGGCTTTTTTTTTCAGACTGACTCGTTAGTTCTTTTATTGCCATTAATCGGCTCATCAAGTGCCAGCACTGCTTTTCTGGTGGGCATTACTGGAGTTCTAGCACCAATTCTGGAGGAGACTGTGTTTCGAGGATTTTTAATGGTGTCCTTGACTAAGTGGTTTCCTACTCCAGTTTGCATACTTGTCAGTGCTGCTCTATTTGCCTTTGCTCATCTGACACCTGGACAATT-CCCACAGTTGTTTATACTT-GGTGTTGCGTT-GGGTTTTTCATATGCTCAAA-CCCATAATCTTCTAACTCCTATCAC-AATACATGCATTTTGGAACTCGGGAGTAATATTACTGTTAACCTTTCTTCAGCTGCAAGGGTATGATATCAAGGAGCTTTTGGGAGCATCTTGAAGGCTTTGACTGATCAGCCTACGGCTTTGTGCATATGCTTTAGTAACTTGATCAAAGATACTTGAAAAGAACAATGGGTTCTCCTTTATTTTACTGTTCTCTGTAATTTCATGTTTCCCGTAACTCCCAGAAGTAAATTACGAGCGAAATATATTGTGTTTGTACTCATCTGCAATGATCTAACTTTAATCTACAAAAGGAAGCACAAACAGCTTTCTATCAAAAAAAA] [+] EMBL AK069925 [CGAGCACTCGAGCTGAGAGCAAAGAAGCGCATCCTTCTCATGGCGGCCTCCTCGTCGTCGGCGGCGGCGGCGGCGTTGTCGCCGGCGATCTCTCTTCACCTGCTCCGGCCGCTCCCGTGCAGAGCCGTACTCCTGTCCAGGCAACGGAGGCCATTTCCATCGCCAAGAGCTGGCTGCCTGGCGGCGGTAAGAGCTCAGCGGCGGTGGCTCCGGTCGCCGGAGATCGGCCGGTGGAGGAGGCGCGGGGGCTACGCCTGCCTCTCCTTCAACTCCGGCAATAAGCCGCCTCCGCCTTCCAGTGAGAATTCAGACGAATGGCCAATCCTTCGCCGATGGGATGTGCCGTGGGAGTGGCAGACGGTGGTGCTCACCATGGTGGGCTGTGGAGTAAGACAGCTTTGTTCTGACAGGATTGGTTGAGCAATCGGTTTTGACGTATGTGGGGTTTAGAGCTGTCGAGGCAACGGTAGATCAGAAGGCAGAAATACTTTTCCTTGGACAACTTAGCGTGACAGCAGTTGTGCTGGGTGTTGTATATGGCATCACCAATACCTTCCGACCACTGCCAGATGATATATTTCGTTATGATATTAAAGAACCATTCAAGCTTCAAAATGGCTGGCTTCTGTGGGCTGGAGTTGGTCTCTTTGGCGCTATAATTT CTATTGCTTTAGTTGGGGTTGCTATGACTTATCTGAATGGTGAACCTCCAGAAAGAGAGGTCAGGCCTTTTACATACTGTACTATATAGATTTTTCTCAGGCCATACAATTTTATTCCCATTTAATTAATTATTACCCCTCAATCTTTAGTTTTTAACTCACATTGTTTTAATCCCATTCATCATTAACCTCTAATTCAATTTGTTCAGCAAGAAAAAAAACACATCTTGGACCGCTTAATATTCATTAAACAATAACCTATAACAATATGCCAAATGGAGCAATTCATGCAATTTGTAATAGACCATTGTCTTTGATTACCCAACCCTTTTGGCTTGCCTTGCATGACCCTAGGTCTTATCTAATCACAATCTTCTCATGTATGGACTGGATTAAGCTGATTGTGATTAAACAATGACAACTCAAGGCTATCATATGGTCACTTGTGCAAGATTCAGATGGTAGGGAAGCCAGAAAGATAGGTTTTCCATGAGTAGCATAGGAATTAGCAAATATGCCTATTCTCTTTGGTTTGAGATGAGAC AGCATAATTAGGAACAGTTTGCGGCATAATTAAGATGGAATGCACCCTTTGATAAAGTGAAGCTTCATACACAAGGTTTATTCAATGCTTTGACTGACAAGCTTATGTGGTAAGGCCTCACTTTACATTGATAGGGGCTTACGCTTTTCCAAATTGAATCTCAACATGTTTTGTGTACTTACCTCCTGTTATACTGATTACCTTTTTTCAGTGTGCTGTTTCTTGAGTCCTGATTGCTGATCTATTTCTCTGGGCTTTTTTTTTCAGACTGACTCGTTAGTTCTTTTATTGCCATTAATCGGCTCATCAAGTGCCAGCACTGCTTTTCTGGTGGGCATTACTGGAGTTCTAGCACCAATTCTGGAGGAGACTGTGTTTCGAGGATTTTTAATGGTGTCCTTGACTAAGTGGTTTCCTACTCCAGTTTGCATACTTGTCAGTGCTGCTCTATTTGCCTTTGCTCATCTGACACCTGGACAATT CCCACAGTTGTTTATACTT GGTGTTGCGTT GGGTTTTTCATATGCTCAAA CCCATAATCTTCTAACTCCTATCAC AATACATGCATTTTGGAACTCGGGAGTAATATTACTGTTAACCTTTCTTCAGCTGCAAGGGTATGATATCAAGGAGCTTTTGGGAGCATCTTGAAGGCTTTGACTGATCAGCCTACGGCTTTGTGCATATGCTTTAGTAACTTGATCAAAGATACTTGAAAAGAACAATGGGTTCTCCTTTATTTTACTGTTCTCTGTAATTTCATGTTTCCCGTAACTCCCAGAAGTAAATTACGAGCGAAATATATTGT ] [+] EMBL CF311138 [ GAGCAAAGAAGCGCATCCTTCTCATGGCGGCCTCCTCGTCGTCGGCGGCGGCGGCGGCGTTGTCGCCGGCGATCTCTCTTCACCTGCTCCGGCCGCTCCCGTGCAGAGCCGTACTCCTGTCCAGGCAACGGAGGCCATTTCCATCGCCAAGAGCTGGCTGCCTGGCGGCGGTAAGAGCTCAGCGGCGGTGGCTCCGGTCGCCGGAGATCGGCCGGTGGAGGAGGCGCGGGGGCTA ] [+] EMBL CF305345 [ AGAAGCGCATCCTTCTCATGGCGGCCTCCTCGTCGTCGGCGGCGGCGGCGGCGTTGTCGCCGGCGATCTCTCTTCACCTGCTCCGGCCGCTCCCGTGCAGAGCCGTACTCCTGTCCAGGCAACGGAGGCCATTTCCATCGCCAAGAGCTGGCTGCCTGGCGGCGGTAAGAGCTCAGCGGCGGTGGCTCCGGTCGCCGGAGATCGGCCGGTGGAGGAGGCGCGGGGGCTACGCCTGCCTCTCCTTCAACTCCGGCAATAAGCCGCCTCCGCCTTCCAGTGAGAATTCAGACGAATGGCCAATCCTTCGCCGATGGGATGTGCCGTGGGAGTGGCAGACGGTGGTGCTCACCATGGTGGGCTGTGGAGTA AGCTTTGTTCTGACAGGATTGGTTGAGCAATCGGTTTTGACGTATGTGGGGTTTAGAGCTGTCGAGGCA ] [+] EMBL CF307817 [ GCATCCTTCTCATGGCGGCCTCCTCGTCGTCGGCGGCGGCGGCGGCGTTGTCGCCGGCGATCTCTCTTCACCTGCTCCGGCCGCTCCCGTGCAGAGCCGTACTCCTGTCCAGGCAACGGAGGCCATTTCCATCGCCAAGAGCTGGCTGCCTGGCGGCGGTAAGAGCTCAGCGGCGGTGGCTCCGGTCGCCGGAGATCGGCCGGTGGAGGAGGCGCGGGGGCTACGCCTGCCTCTCCTTCAACTCCGGCAATAAGCCGCCTCCGCCTTCCAGTGAGAATTCAGACGAATGGCCAATCCTTCGCCGATGGGATGTGCCGTGGGAGTGGCAGACGGTGGTGCTCACC ] [+] EMBL CB639742 [ GCGGCCTCCTCGTCGTCGGCGGCGGCGGCGGCGTTGTCGCCGGCGATCTCTCTTCACCTGCTCCGGCCGCTCCCGTGCAGAGCCGTACTCCTGTCCAGGCAACGGAGGCCATTTCCATCGCCAAGAGCTGGCTGCCTGGCGGCGGTAAGAGCTCAGCGGCGGTGGCTCCGGTCGCCGGAGATCGGCCGGTGGAGGAGGCGCGGGGGCTACGCCTGCCTCTCCTTCAACTCCGGCAATAAGCCGCCTCCGCCTTCCAGTGAGAATTCAGACGAATGGCCAATCCTTCGCCGATGGGATGTGCCGTGGGAGTGGCACACGGTGGTGCTCAC ] [+] EMBL AU175021 [ GCCAATCCTTCGCCGATGGGATGTGCCGTGGGAGTGGCANACGGTGGTGCTCACCATGGTGGGCTGTGGAGTA AGCTTTGTTCTGACAGGATTGGTTGAGCAATCGGTTTTGACGTATGTGGGGTTTAGAGCTGTCGAGGCAACGGTAGATCAGAAGGCAGAAATACTTTTCCTTGGACAACTTAGCGTGACAGCAGTTGTGCTGGGTGTTGTATATGGCATCACCAATACCTTCCGACCACTGCCAGATGATATATTTCGTTATGATATTAAAGAACCATTCAAGCTTCAAAATGGCTGGCTTCTGTGGGCTGGAGTTGGTCTCTTTGGCGCTATAATTT CTATTGCTTTAGTTGGGGTTGCTATGACTTATCTGAATGGTGAACCTCCAGAAAGAGAGactg ] [-] EMBL CA766637 [ tcaAAAATGGCTGGCTTCTGTGGGCTGGAGTTGGTCTCTTTGGCGCTATAATTTNCTATTGCTTTAGTTGGGGTTGCTATGACTTATCTGAATGGTGAACCTCCAGAAAGAGAGGTCAGGCCTTTTACATACTGTACTATATAGATTTTTCTCAGGCCATACAATTTTATTCCCATTTAATTAATTATTACCTCTCAATCTTTAGTTTTTAACTCACATTGTTTTAATCCCATTCATCATTAACCTCTAATTCAATTTGTTCAGCAAGAAAAAAAACACATCTTGGACCGCTTAATATTCATTAAACAATAACCTATAACAATATGCCAAATGGAGCAATTCATGCAATTTGTATTAGACCATTGTCTTTGATTACCCAACCCTTTTGGCTTGCCTTGCATGACCCTAGGTCTTATCTAATCACAATCTTCTCATGTATGGACTGGATTAAGCTGATTGTGATTAAACAATGACAACTCAAGGCTATCATATGGTCACTTGTGCAAGATTCAGATGGTAGGGAAGCCAGAAAGGTAGGTTTTCCATGAGTAGCATAGGAATTAGCAAATATGCCTATTCTCTTTGGTTTGAGATGAGACAGAGCATAATTAGGAACAGTTTGCGGCATAATTAAGATGGAATGTACCCTTTGATAAAGTGAAGCTTCATACACAAGGTTTATTCAATGCTTTGACTGACAAGCTTATGTGGTAAGGCCTCACTTTACATTGATAGGGGCTTACGCTTTTCCAAATT AATCTCAACATGTTTTGT ] [-] EMBL CB643978 [ ACTGACAAGCTTATGTGGTAAGGCCTCACTTTACATTGATAGGGGCTTACGCTTTTCCAAATTGAATCTCAACATGTTTTGTGTACTTACCTCCTGTTATACTGATTACCTTTTTTCAGTGTGCTGTTTCTTGAGTCCTGATTGCTGATCTATTTCTCTGGACTTTTTTTTTCAGACTGACTCGTTAGTTCTTTTATTGCCATTAATCGGCTCATCAAGTGCCAGCACTGCTTTTCTGGTGGGCATTACTGGAGTTCTAGCACCAATTCTGGAGGAGACTGTGTTTCGAGGATTTTTAATGGTGTCCTTGACTAAGTGGTTTCCTACTCCAGTTTGCATACTTGTCAGTGCTGCTCTATTTGCCTTTGCTCATCTGACACCTGGACAATT CCCACAGTTGTTTATACTT GGTGTTGCGTT GGGTTTTTCATATGCTCAAA CCCATAATCTTCTAACTCCTATCAC AATACATGCATTTTGGAACTCGGGAGTAATATTACTGTTAACCTTTCTTCAGCTGCAAGGGTATGATATCAAGGAGCTTTTGGGAGCATCTTGAAGGCTTTGACTGATCAGCCTACGGCTTTGTGCATATGCTTTAGTAACTTGATCAAAGATACTTGAAAAGAACAATGGGTTCTCCTTTATTTTACTGTTCTCTGTAATTTCATGTTTCCCGTAACTCCCAGAAGTAAATTACGAGCGAAATATATTGTGTTTGTACTCATCTGCAATGATCTAACTTTAATCTACAAAAGGAAGCACAAACAG ] [+] EMBL AA750453 [ TCAGACTGATTCGTTAGTTCTTTTATTGCCATTAATTGGCTCATCAAGTGCCAGCACTGCTTTTTTGGTGGGCATTACTGGAGTTCTAGCACCAATTCTGGAGGAGACTGTTTTTCGAGGATTTTAAATGGTGTCCTTGACTAAGTGGTTTCCTACTCCAG TTGCATACTTGTAAGTGCTGCTCTATTTGCCTTTCCTCATCTGACACCTGGACAATG CCCACA ] [+] EMBL AU175020 [ ATACTTGTCAGTGCTGCTCTATTTGCCTTTGCTCATCTGACACCTGGACAATTCCCCNCAGTTGTTTATACTTGGGTGTTGCGTTGGGGTTTTTCATATGCTCAAACCCCATAATCTTCTAACTCCTATCCCAAATACATGCATTTTGGAACTCGGGAGTAATATTACTGTTAACCTTTCTTCAGCTGCAAGGGTATGATATCAAGGAGCTTTTGGGAGCATCTTGAAGGCTTTGACTGATCAGCCTACGGCTTTGTGCATATGCTTTAGTAACTTGATCAAAGATACTTGAAAAGAACAATGGGTTCTCCTTTATTTTACTGTTCTCTGTAATTTCATGTTTCCCGTAACTCCCAGAAGTAAATTACGAGCGAAATATATTGTGTTTGTACTCATCTGCAATGATCTAACTTTAATCTACAAAAGGAAGCACAAACAGCTTTCTATCAAAAAAAA] consensusID : consensus_13532#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 836 fasta sequence [GCCTCCTCGTCGTCGGCGGCGGCGGCGGCGTTGTCGCCGGCGATCTCTCTTCACCTGCTCCGGCCGCTCCCGTGCAGAGCCGTACTCCTGTCCAGGCAACGGAGGCCATTTCCATCGCCAAGAGCTGGCTGCCTCTCCTTCAACTCCGGCAATAAGCCGCCTCCGCCTTCCAGTGAGAATTCAGACGAATGGCCAATCCTTCGCCGATGGGATGTGCCGTGGGAGTGGCAGACGGTGGTGCTCACCATGGTGGGCTGTGGAGTAAGATATTAAAGAACCATTCAAGCTTCAAAATGGCTGGCTTCTGTGGGCTGGAGTTGGTCTCTTTGGCGCTATAATTTCTATTGCTTTAGTTGGGGTTGCTATGACTTATCTGAATGGTGAACCTCCAGAAAGAGAGGTCAGGCCTTTTACATACTGTACTATATAGATTTTTCTCAGGCCATACAATTTTATTCCCATTTAATTAATTATTACCTCTCAATCTTTAGTTTTTAACTCACATTGTTTTAATCCCATTCATCATTAACCTCTAATTCAATTTGTTCAGCAAGAAAAAAAACACATCTTGGACCGCTTAATATTCATTAAACAATAACCTATAACAATATGCCAAATGGAGCAATTCATGCAATTTGTATTAGACCATTGTCTTTGATTACCCAACCCTTTTGGCTTGCCTTGCATGACCCTAGGTCTTATCTAATCACAATCTTCTCATGTATGGACTGGATTAAGCTGATTGTGATTAACAATGACAACTCAAGGCTATCATATGGTCACTTGTGCAAGATTCAGATGGTAGGGAAGCCAGAAAGATAGGTTTTCCATGAGTA] [+] EMBL CB643977 [GCCTCCTCGTCGTCGGCGGCGGCGGCGGCGTTGTCGCCGGCGATCTCTCTTCACCTGCTCCGGCCGCTCCCGTGCAGAGCCGTACTCCTGTCCAGGCAACGGAGGCCATTTCCATCGCCAAGAGCTGGCTGCCTCTCCTTCAACTCCGGCAATAAGCCGCCTCCGCCTTCCAGTGAGAATTCAGACGAATGGCCAATCCTTCGCCGATGGGATGTGCCGTGGGAGTGGCAGACGGTGGTGCTCACCATGGTGGGCTGTGGAGTAAGATATTAAAGAACCATTCAAGCTTCAAAATGGCTGGCTTCTGTGGGCTGGAGTTGGTCTCTTTGGCGCTATAATTTCTATTGCTTTAGTTGGGGTTGCTATGACTTATCTGAATGGTGAACCTCCAGAAAGAGAGGTCAGGCCTTTTACATACTGTACTATATAGATTTTTCTCAGGCCATACAATTTTATTCCCATTTAATTAATTATTACCTCTCAATCTTTAGTTTTTAACTCACATTGTTTTAATCCCATTCATCATTAACCTCTAATTCAATTTGTTCAGCAAGAAAAAAAACACATCTTGGACCGCTTAATATTCATTAAACAATAACCTATAACAATATGCCAAATGGAGCAATTCATGCAATTTGTATTAGACCATTGTCTTTGATTACCCAACCCTTTTGGCTTGCCTTGCATGACCCTAGGTCTTATCTAATCACAATCTTCTCATGTATGGACTGGATTAAGCTGATTGTGATTAACAATGACAACTCAAGGCTATCATATGGTCACTTGTGCAAGATTCAGATGGTAGGGAAGCCAGAAAGATAGGTTTTCCATGAGTA] consensusID : consensus_13532#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 680 fasta sequence [ATGATATTAAAGAACCATTCAAGCTTCAAAATGGCTGGCTTCTGTGGGCTGGAGTTGGTCTCTTTGGCGCTATAATTTCTATTGCTTTAGTTGGGGTTGCTATGACTTATCTGAATGGTGAACCTCCANGAAAGAGAGACTGACTCGTTAGTTTCTTTTATTGCCATTAATCGGCTCATCAAGTGCCAGCACTGCTTTTCTGGTGGGCATTACTGGAGTTCTAGCACCAATTCTGGAGGAGACTGTGTTTCGAGGATTTTTAATGGTGTCCTTGACTAAGTGGTTTCCTACTCCAGTTTGCATACTTGTCAGTGCTGCTCTATTTGCCTTTGCTCATCTGACACCTGGACAATTCCCACAGTTGTTTATACTTGGTGTTGCGTTGGGTTTTTCATATGCTCAAACCCATAATCTTCTAACTCCTATCACAATACATGCATTTTGGAACTCGGGAGTAATATTACTGTTAACCTTTCTTCAGCTGCAAGGGTATGATATCAAGGAGCTTTTGGGAGCATCTTGAAGGCTTTGACTGATCAGCCTACGGCTTTGTGCATATGCTTTAGTAACTTGATCAAAGATACTTGAAAAGAACAATGGGTTCTCCTTTATTTTACTGTTCTCTGTAATTTCATGTTTCCCGTAACTCCCAGAAGTAAATTACGAGCGAAATAAAAAAA] [-] EMBL CF307818 [ATGATATTAAAGAACCATTCAAGCTTCAAAATGGCTGGCTTCTGTGGGCTGGAGTTGGTCTCTTTGGCGCTATAATTTCTATTGCTTTAGTTGGGGTTGCTATGACTTATCTGAATGGTGAACCTCCANGAAAGAGAGACTGACTCGTTAGTTTCTTTTATTGCCATTAATCGGCTCATCAAGTGCCAGCACTGCTTTTCTGGTGGGCATTACTGGAGTTCTAGCACCAATTCTGGAGGAGACTGTGTTTCGAGGATTTTTAATGGTGTCCTTGACTAAGTGGTTTCCTACTCCAGTTTGCATACTTGTCAGTGCTGCTCTATTTGCCTTTGCTCATCTGACACCTGGACAATTCCCACAGTTGTTTATACTTGGTGTTGCGTTGGGTTTTTCATATGCTCAAACCCATAATCTTCTAACTCCTATCACAATACATGCATTTTGGAACTCGGGAGTAATATTACTGTTAACCTTTCTTCAGCTGCAAGGGTATGATATCAAGGAGCTTTTGGGAGCATCTTGAAGGCTTTGACTGATCAGCCTACGGCTTTGTGCATATGCTTTAGTAACTTGATCAAAGATACTTGAAAAGAACAATGGGTTCTCCTTTATTTTACTGTTCTCTGTAATTTCATGTTTCCCGTAACTCCCAGAAGTAAATTACGAGCGAAATAAAAAAA] consensusID : consensus_13532#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 368 fasta sequence [AGTGGTTAATACTGGGTGTGGCGTGGGGTTTTTCAAAGGCTCAAACCCATATTTTTTTAATTCCTATCCCAATACAGGCATTTTGGAACTGGGAAGTAATATTACTGTTACCCTTTTTTCAGCTGCAAGGGTATAATATCAAGGAGCTTTTGGGAGCTTCTTGAAGGCTTTGATTGATCACCTTACGGCTTGGGGCATAGGCTTTAGTAACTTGATCAAAAATACTTGAAAAGACCAAGGGGTTCCCCTTAATTTAACGGTTCTCGGAAATTTCATGTTTCCGGTAACTCCCAAAAGTAAATTACGAGCGAAATATATGGTGTTGGTATTCATCGGCAAAAAAAAAAAAAAAAACCCCTGTCATGCGT] [-] EMBL CF311139 [AGTGGTTAATACTGGGTGTGGCGTGGGGTTTTTCAAAGGCTCAAACCCATATTTTTTTAATTCCTATCCCAATACAGGCATTTTGGAACTGGGAAGTAATATTACTGTTACCCTTTTTTCAGCTGCAAGGGTATAATATCAAGGAGCTTTTGGGAGCTTCTTGAAGGCTTTGATTGATCACCTTACGGCTTGGGGCATAGGCTTTAGTAACTTGATCAAAAATACTTGAAAAGACCAAGGGGTTCCCCTTAATTTAACGGTTCTCGGAAATTTCATGTTTCCGGTAACTCCCAAAAGTAAATTACGAGCGAAATATATGGTGTTGGTATTCATCGGCAAAAAAAAAAAAAAAAACCCCTGTCATGCGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13532#2 ------------------------------------------------------------ consensus_13532#3 ------------------------------------------------------------ consensus_13532#0 CGAGCACTCGAGCTGAGAGCAAAGAAGCGCATCCTTCTCATGGCGGCCTCCTCGTCGTCG 60 consensus_13532#1 ------------------------------------------------------------ consensus_13532#2 ------------------------------------------------------------ consensus_13532#3 ------------------------------------------------------------ consensus_13532#0 GCGGCGGCGGCGGCGTTGTCGCCGGCGATCTCTCTTCACCTGCTCCGGCCGCTCCCGTGC 120 consensus_13532#1 ------------------------------------------------------------ consensus_13532#2 ------------------------------------------------------------ consensus_13532#3 ------------------------------------------------------------ consensus_13532#0 AGAGCCGTACTCCTGTCCAGGCAACGGAGGCCATTTCCATCGCCAAGAGCTGGCTGCCTG 180 consensus_13532#1 ------------------------------------------------------------ consensus_13532#2 ------------------------------------------------------------ consensus_13532#3 ------------------------------------------------------------ consensus_13532#0 GCGGCGGTAAGAGCTCAGCGGCGGTGGCTCCGGTCGCCGGAGATCGGCCGGTGGAGGAGG 240 consensus_13532#1 ------------------------------------------------------------ consensus_13532#2 ------------------------------------------------------------ consensus_13532#3 ------------------------------------------------------------ consensus_13532#0 CGCGGGGGCTACGCCTGCCTCTCCTTCAACTCCGGCAATAAGCCGCCTCCGCCTTCCAGT 300 consensus_13532#1 ------------------------------------------------------------ consensus_13532#2 ------------------------------------------------------------ consensus_13532#3 ------------------------------------------------------------ consensus_13532#0 GAGAATTCAGACGAATGGCCAATCCTTCGCCGATGGGATGTGCCGTGGGAGTGGCAGACG 360 consensus_13532#1 ------------------------------------------------------------ consensus_13532#2 ------------------------------------------------------------ consensus_13532#3 ------------------------------------------------------------ consensus_13532#0 GTGGTGCTCACCATGGTGGGCTGTGGAGTAAGCTTTGTTCTGACAGGATTGGTTGAGCAA 420 consensus_13532#1 ------------------------------------------------------------ consensus_13532#2 ------------------------------------------------------------ consensus_13532#3 ------------------------------------------------------------ consensus_13532#0 TCGGTTTTGACGTATGTGGGGTTTAGAGCTGTCGAGGCAACGGTAGATCAGAAGGCAGAA 480 consensus_13532#1 ------------------------------------------------------------ consensus_13532#2 ------------------------------------------------------------ consensus_13532#3 ------------------------------------------------------------ consensus_13532#0 ATACTTTTCCTTGGACAACTTAGCGTGACAGCAGTTGTGCTGGGTGTTGTATATGGCATC 540 consensus_13532#1 ------------------------------------------------------------ consensus_13532#2 ------------------------------------------------------------ consensus_13532#3 ------------------------------------------------------------ consensus_13532#0 ACCAATACCTTCCGACCACTGCCAGATGATATATTTCGTTATGATATTAAAGAACCATTC 600 consensus_13532#1 ------------------------------------------------------------ consensus_13532#2 ------------------------------------------------------------ consensus_13532#3 ------------------------------------------------------------ consensus_13532#0 AAGCTTCAAAATGGCTGGCTTCTGTGGGCTGGAGTTGGTCTCTTTGGCGCTATAATTTCT 660 consensus_13532#1 ------------------------------------------------------------ consensus_13532#2 ------------------------------------------------------------ consensus_13532#3 ------------------------------------------------------------ consensus_13532#0 ATTGCTTTAGTTGGGGTTGCTATGACTTATCTGAATGGTGAACCTCCAGAAAGAGAGGTC 720 consensus_13532#1 ------------------------------------------------------------ consensus_13532#2 ------------------------------------------------------------ consensus_13532#3 ------------------------------------------------------------ consensus_13532#0 AGGCCTTTTACATACTGTACTATATAGATTTTTCTCAGGCCATACAATTTTATTCCCATT 780 consensus_13532#1 ------------------------------------------------------------ consensus_13532#2 ------------------------------------------------------------ consensus_13532#3 ------------------------------------------------------------ consensus_13532#0 TAATTAATTATTACCCCTCAATCTTTAGTTTTTAACTCACATTGTTTTAATCCCATTCAT 840 consensus_13532#1 ------------------------------------------------------------ consensus_13532#2 ------------------------------------------------------------ consensus_13532#3 ------------------------------------------------------------ consensus_13532#0 CATTAACCTCTAATTCAATTTGTTCAGCAAGAAAAAAAACACATCTTGGACCGCTTAATA 900 consensus_13532#1 ------------------------------------------------------------ consensus_13532#2 ------------------------------------------------------------ consensus_13532#3 ------------------------------------------------------------ consensus_13532#0 TTCATTAAACAATAACCTATAACAATATGCCAAATGGAGCAATTCATGCAATTTGTAATA 960 consensus_13532#1 ------------------------------------------------------------ consensus_13532#2 ------------------------------------------------------------ consensus_13532#3 ------------------------------------------------------------ consensus_13532#0 GACCATTGTCTTTGATTACCCAACCCTTTTGGCTTGCCTTGCATGACCCTAGGTCTTATC 1020 consensus_13532#1 ------------------------------------------------------------ consensus_13532#2 ------------------------------------------------------------ consensus_13532#3 ------------------------------------------------------------ consensus_13532#0 TAATCACAATCTTCTCATGTATGGACTGGATTAAGCTGATTGTGATTAAACAATGACAAC 1080 consensus_13532#1 ------------------------------------------------------------ consensus_13532#2 ------------------------------------------------------------ consensus_13532#3 ------------------------------------------------------------ consensus_13532#0 TCAAGGCTATCATATGGTCACTTGTGCAAGATTCAGATGGTAGGGAAGCCAGAAAGATAG 1140 consensus_13532#1 ------------------------------------------------------------ consensus_13532#2 ------------------------------------------------------------ consensus_13532#3 ------------------------------------------------------------ consensus_13532#0 GTTTTCCATGAGTAGCATAGGAATTAGCAAATATGCCTATTCTCTTTGGTTTGAGATGAG 1200 consensus_13532#1 ------------------------------------------------------------ consensus_13532#2 ------------------------------------------------------------ consensus_13532#3 ------------------------------------------------------------ consensus_13532#0 ACAGCATAATTAGGAACAGTTTGCGGCATAATTAAGATGGAATGCACCCTTTGATAAAGT 1260 consensus_13532#1 ------------------------------------------------------------ consensus_13532#2 ------------------------------------------------------------ consensus_13532#3 ------------------------------------------------------------ consensus_13532#0 GAAGCTTCATACACAAGGTTTATTCAATGCTTTGACTGACAAGCTTATGTGGTAAGGCCT 1320 consensus_13532#1 ----------------------------------GCCTCCTCGTCGTCGGCGGCGGCGGC 26 consensus_13532#2 ----ATGATATTAAAGAACCATTCAAGCTTCAAAATGGCTGGCTTCTGTGGGCTGGAGTT 56 consensus_13532#3 ------------------------------------------------------------ consensus_13532#0 CACTTTACATTGATAGGGGCTTACGCTTTTCCAAATTGAATCTCAACATGTTTTGTGTAC 1380 consensus_13532#1 GGCGTTGTCGCCGGCGATCTCTCTTCACCTGCTCCGGCCGCTCCCGTGCAGAGCCGTACT 86 consensus_13532#2 GGTCTCTTTGGCGCTATA---ATTTCTATTGCTTTAGTTGGGGTTGCTATGACTTATCT- 112 consensus_13532#3 ------------------------------------------------------------ consensus_13532#0 TTACCTCCTGTTATACTG---ATTACCTTTTTTCAGTGTGCTGTTTCTTGAGTCCTGAT- 1436 consensus_13532#1 CCTGTCCAGGCAACGGAGGCCATTTCCATCGCCAAGAGCTGGCTGCCTCTCCTTCAACTC 146 consensus_13532#2 -----GAATGGTGAACCTCCANGAAAGAG-------AGACTGACTCGTTAGTTTCTTTTA 160 consensus_13532#3 ------------------------------------------------------------ consensus_13532#0 -----TGCTGATCTATTTCTCTGGGCTTTTTTTTTCAGACTGACTCGTTAGTT-CTTTTA 1490 consensus_13532#1 CGGCAATAAGCCGCCTCCGCCTTCCAGTGAGAATTCAGACGAATGGCCAATCCTTCGCCG 206 consensus_13532#2 TTGCCATTAATCGGCTCATCAAGTGCCAGCACTGCTTTTC-TGGTGGGCATTACTGGAGT 219 consensus_13532#3 ------------------------------------------------------------ consensus_13532#0 TTGCCATTAATCGGCTCATCAAGTGCCAGCACTGCTTTTC-TGGTGGGCATTACTGGAGT 1549 consensus_13532#1 ATGGGATGTGCCGTGGGAGTGGCAGACGGTGGTGCTCACCATGGTGGGCTGTGGAGTAAG 266 consensus_13532#2 TCTAGCACCAATTCTGGAGGAGACTGTGTTTCGAGGATTTTTAATGGTGTCCTTGACTAA 279 consensus_13532#3 ------------------------------------------------------------ consensus_13532#0 TCTAGCACCAATTCTGGAGGAGACTGTGTTTCGAGGATTTTTAATGGTGTCCTTGACTAA 1609 consensus_13532#1 ATATTAAAGAACCATTCAAGCTTCAAAATGGCTGGCTTCTGTGGGCTGGAGTTGGTCTCT 326 consensus_13532#2 GTGGTTTCCTACTCCAGTTTGCATACTTGTCAGTGCTGCTCTATTTGCCTTTGCTCATCT 339 consensus_13532#3 ------------------------------------------------------------ consensus_13532#0 GTGGTTTCCTACTCCAGTTTGCATACTTGTCAGTGCTGCTCTATTTGCCTTTGCTCATCT 1669 consensus_13532#1 TTGGCGCTATAATTTCTATTGCTT--TAGTTGGGGTTGCTATGACTTATCTGAATGGTGA 384 consensus_13532#2 GACACCTGGACAATTCCCACAGTTGTTTATACTTGGTGTTGCGTTGGGTTTTT------C 393 consensus_13532#3 --------------------AGTGGTTAATACTGGGTGTGGCGTGGGGTTTTT------C 34 consensus_13532#0 GACACCTGGACAATTCCCACAGTTGTTTATACTTGGTGTTGCGTTGGGTTTTT------C 1723 consensus_13532#1 ACCTCCAGAAAGAGAGGTCAGGCCTTTTACATACTGTACTATATAGATTTTTCTCAGGCC 444 * ** * * ** * * **** * consensus_13532#2 ATATGCTCAAACCCATAATCTTCTAACTCCTATCACAATACATGCATTTTGGAACTCGGG 453 consensus_13532#3 AAAGGCTCAAACCCATATTTTTTTAATTCCTATCCCAATACAGGCATTTTGGAACTGGGA 94 consensus_13532#0 ATATGCTCAAACCCATAATCTTCTAACTCCTATCACAATACATGCATTTTGGAACTCGGG 1783 consensus_13532#1 ATACAATTTTATTCCCATTTAATTAATTATTACCTCTCAATCTTTAGTTTTTAACTC--A 502 * * * * * * * *** * ** * * * * *** **** consensus_13532#2 AGTAATATTACTGTTAACCTTTCTTCAGCTGCAAGGGTATGATATCAAGGAGCTTTTGGG 513 consensus_13532#3 AGTAATATTACTGTTACCCTTTTTTCAGCTGCAAGGGTATAATATCAAGGAGCTTTTGGG 154 consensus_13532#0 AGTAATATTACTGTTAACCTTTCTTCAGCTGCAAGGGTATGATATCAAGGAGCTTTTGGG 1843 consensus_13532#1 CATTGTTTTAATCCCATTCATCATTAACCTCTAATTCAATTTGTTCAGCAAGAAAAAAAA 562 * * *** * * * * ** * ** ** ** *** ** consensus_13532#2 AGCATCTTGAAGGCTTTGAC--TGATCAGCCTACGGCTTTGTGCATATGCTTTAGTAACT 571 consensus_13532#3 AGCTTCTTGAAGGCTTTGAT--TGATCACCTTACGGCTTGGGGCATAGGCTTTAGTAACT 212 consensus_13532#0 AGCATCTTGAAGGCTTTGAC--TGATCAGCCTACGGCTTTGTGCATATGCTTTAGTAACT 1901 consensus_13532#1 CACATCTTGGACCGCTTAATATTCATTAAACAATAACCTATAACAATATGCCAAATGGAG 622 * ***** * ** * * ** * * * * ** * * consensus_13532#2 TGATCAAAGATACTTGAAAAGAACAATGGGTTCTCCTTTATTTTACTGTTCT--CTGTAA 629 consensus_13532#3 TGATCAAAAATACTTGAAAAGACCAAGGGGTTCCCCTTAATTTAACGGTTCT--CGGAAA 270 consensus_13532#0 TGATCAAAGATACTTGAAAAGAACAATGGGTTCTCCTTTATTTTACTGTTCT--CTGTAA 1959 consensus_13532#1 CAATTCATGCAATTTGTATTAGACCATTGTCTTTGATT-ACCCAACCCTTTTGGCTTGCC 681 ** * * *** * * * * * ** * ** ** * * consensus_13532#2 TTTCATGTTTCCCG----TAACTC-CCAGAAGTAAATTACGAGCGAAATAAAAAAA---- 680 consensus_13532#3 TTTCATGTTTCCGG----TAACTC-CCAAAAGTAAATTACGAGCGAAATATATGGTGTTG 325 consensus_13532#0 TTTCATGTTTCCCG----TAACTC-CCAGAAGTAAATTACGAGCGAAATATATTGTGTTT 2014 consensus_13532#1 TTGCATGACCCTAGGTCTTATCTAATCACAATCTTCTCATGTATGGACTGGATTAAGCTG 741 ** **** * * ** ** ** ** * * * * * * * consensus_13532#2 ------------------------------------------------------------ consensus_13532#3 GTATTCATCGGCAAAAAAAAAAAAAAAAACCCCTGTCATGCGT----------------- 368 consensus_13532#0 GTACTCATCTGCAATGATCTAACTTTAATCTACAAAAGGAAGCACAAACAGCTTTCTATC 2074 consensus_13532#1 ATTGTGATTAACAATGACAACTCAAGGCTATCATATGGTCACTTGTGCAAGATTCAGATG 801 consensus_13532#2 ----------------------------------- consensus_13532#3 ----------------------------------- consensus_13532#0 AAAAAAAA--------------------------- 2082 consensus_13532#1 GTAGGGAAGCCAGAAAGATAGGTTTTCCATGAGTA 836 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||