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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13532#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 2082 fasta sequence
[CGAGCACTCGAGCTGAGAGCAAAGAAGCGCATCCTTCTCATGGCGGCCTCCTCGTCGTCGGCGGCGGCGGCGGCGTTGTCGCCGGCGATCTCTCTTCACCTGCTCCGGCCGCTCCCGTGCAGAGCCGTACTCCTGTCCAGGCAACGGAGGCCATTTCCATCGCCAAGAGCTGGCTGCCTGGCGGCGGTAAGAGCTCAGCGGCGGTGGCTCCGGTCGCCGGAGATCGGCCGGTGGAGGAGGCGCGGGGGCTACGCCTGCCTCTCCTTCAACTCCGGCAATAAGCCGCCTCCGCCTTCCAGTGAGAATTCAGACGAATGGCCAATCCTTCGCCGATGGGATGTGCCGTGGGAGTGGCAGACGGTGGTGCTCACCATGGTGGGCTGTGGAGTA----AGCTTTGTTCTGACAGGATTGGTTGAGCAATCGGTTTTGACGTATGTGGGGTTTAGAGCTGTCGAGGCAACGGTAGATCAGAAGGCAGAAATACTTTTCCTTGGACAACTTAGCGTGACAGCAGTTGTGCTGGGTGTTGTATATGGCATCACCAATACCTTCCGACCACTGCCAGATGATATATTTCGTTATGATATTAAAGAACCATTCAAGCTTCAAAATGGCTGGCTTCTGTGGGCTGGAGTTGGTCTCTTTGGCGCTATAATTT-CTATTGCTTTAGTTGGGGTTGCTATGACTTATCTGAATGGTGAACCTCCAGAAAGAGAGGTCAGGCCTTTTACATACTGTACTATATAGATTTTTCTCAGGCCATACAATTTTATTCCCATTTAATTAATTATTACCCCTCAATCTTTAGTTTTTAACTCACATTGTTTTAATCCCATTCATCATTAACCTCTAATTCAATTTGTTCAGCAAGAAAAAAAACACATCTTGGACCGCTTAATATTCATTAAACAATAACCTATAACAATATGCCAAATGGAGCAATTCATGCAATTTGTAATAGACCATTGTCTTTGATTACCCAACCCTTTTGGCTTGCCTTGCATGACCCTAGGTCTTATCTAATCACAATCTTCTCATGTATGGACTGGATTAAGCTGATTGTGATTAAACAATGACAACTCAAGGCTATCATATGGTCACTTGTGCAAGATTCAGATGGTAGGGAAGCCAGAAAGATAGGTTTTCCATGAGTAGCATAGGAATTAGCAAATATGCCTATTCTCTTTGGTTTGAGATGAGAC--AGCATAATTAGGAACAGTTTGCGGCATAATTAAGATGGAATGCACCCTTTGATAAAGTGAAGCTTCATACACAAGGTTTATTCAATGCTTTGACTGACAAGCTTATGTGGTAAGGCCTCACTTTACATTGATAGGGGCTTACGCTTTTCCAAATTGAATCTCAACATGTTTTGTGTACTTACCTCCTGTTATACTGATTACCTTTTTTCAGTGTGCTGTTTCTTGAGTCCTGATTGCTGATCTATTTCTCTGGGCTTTTTTTTTCAGACTGACTCGTTAGTTCTTTTATTGCCATTAATCGGCTCATCAAGTGCCAGCACTGCTTTTCTGGTGGGCATTACTGGAGTTCTAGCACCAATTCTGGAGGAGACTGTGTTTCGAGGATTTTTAATGGTGTCCTTGACTAAGTGGTTTCCTACTCCAGTTTGCATACTTGTCAGTGCTGCTCTATTTGCCTTTGCTCATCTGACACCTGGACAATT-CCCACAGTTGTTTATACTT-GGTGTTGCGTT-GGGTTTTTCATATGCTCAAA-CCCATAATCTTCTAACTCCTATCAC-AATACATGCATTTTGGAACTCGGGAGTAATATTACTGTTAACCTTTCTTCAGCTGCAAGGGTATGATATCAAGGAGCTTTTGGGAGCATCTTGAAGGCTTTGACTGATCAGCCTACGGCTTTGTGCATATGCTTTAGTAACTTGATCAAAGATACTTGAAAAGAACAATGGGTTCTCCTTTATTTTACTGTTCTCTGTAATTTCATGTTTCCCGTAACTCCCAGAAGTAAATTACGAGCGAAATATATTGTGTTTGTACTCATCTGCAATGATCTAACTTTAATCTACAAAAGGAAGCACAAACAGCTTTCTATCAAAAAAAA]
[+] EMBL AK069925 [CGAGCACTCGAGCTGAGAGCAAAGAAGCGCATCCTTCTCATGGCGGCCTCCTCGTCGTCGGCGGCGGCGGCGGCGTTGTCGCCGGCGATCTCTCTTCACCTGCTCCGGCCGCTCCCGTGCAGAGCCGTACTCCTGTCCAGGCAACGGAGGCCATTTCCATCGCCAAGAGCTGGCTGCCTGGCGGCGGTAAGAGCTCAGCGGCGGTGGCTCCGGTCGCCGGAGATCGGCCGGTGGAGGAGGCGCGGGGGCTACGCCTGCCTCTCCTTCAACTCCGGCAATAAGCCGCCTCCGCCTTCCAGTGAGAATTCAGACGAATGGCCAATCCTTCGCCGATGGGATGTGCCGTGGGAGTGGCAGACGGTGGTGCTCACCATGGTGGGCTGTGGAGTAAGACAGCTTTGTTCTGACAGGATTGGTTGAGCAATCGGTTTTGACGTATGTGGGGTTTAGAGCTGTCGAGGCAACGGTAGATCAGAAGGCAGAAATACTTTTCCTTGGACAACTTAGCGTGACAGCAGTTGTGCTGGGTGTTGTATATGGCATCACCAATACCTTCCGACCACTGCCAGATGATATATTTCGTTATGATATTAAAGAACCATTCAAGCTTCAAAATGGCTGGCTTCTGTGGGCTGGAGTTGGTCTCTTTGGCGCTATAATTT CTATTGCTTTAGTTGGGGTTGCTATGACTTATCTGAATGGTGAACCTCCAGAAAGAGAGGTCAGGCCTTTTACATACTGTACTATATAGATTTTTCTCAGGCCATACAATTTTATTCCCATTTAATTAATTATTACCCCTCAATCTTTAGTTTTTAACTCACATTGTTTTAATCCCATTCATCATTAACCTCTAATTCAATTTGTTCAGCAAGAAAAAAAACACATCTTGGACCGCTTAATATTCATTAAACAATAACCTATAACAATATGCCAAATGGAGCAATTCATGCAATTTGTAATAGACCATTGTCTTTGATTACCCAACCCTTTTGGCTTGCCTTGCATGACCCTAGGTCTTATCTAATCACAATCTTCTCATGTATGGACTGGATTAAGCTGATTGTGATTAAACAATGACAACTCAAGGCTATCATATGGTCACTTGTGCAAGATTCAGATGGTAGGGAAGCCAGAAAGATAGGTTTTCCATGAGTAGCATAGGAATTAGCAAATATGCCTATTCTCTTTGGTTTGAGATGAGAC AGCATAATTAGGAACAGTTTGCGGCATAATTAAGATGGAATGCACCCTTTGATAAAGTGAAGCTTCATACACAAGGTTTATTCAATGCTTTGACTGACAAGCTTATGTGGTAAGGCCTCACTTTACATTGATAGGGGCTTACGCTTTTCCAAATTGAATCTCAACATGTTTTGTGTACTTACCTCCTGTTATACTGATTACCTTTTTTCAGTGTGCTGTTTCTTGAGTCCTGATTGCTGATCTATTTCTCTGGGCTTTTTTTTTCAGACTGACTCGTTAGTTCTTTTATTGCCATTAATCGGCTCATCAAGTGCCAGCACTGCTTTTCTGGTGGGCATTACTGGAGTTCTAGCACCAATTCTGGAGGAGACTGTGTTTCGAGGATTTTTAATGGTGTCCTTGACTAAGTGGTTTCCTACTCCAGTTTGCATACTTGTCAGTGCTGCTCTATTTGCCTTTGCTCATCTGACACCTGGACAATT CCCACAGTTGTTTATACTT GGTGTTGCGTT GGGTTTTTCATATGCTCAAA CCCATAATCTTCTAACTCCTATCAC AATACATGCATTTTGGAACTCGGGAGTAATATTACTGTTAACCTTTCTTCAGCTGCAAGGGTATGATATCAAGGAGCTTTTGGGAGCATCTTGAAGGCTTTGACTGATCAGCCTACGGCTTTGTGCATATGCTTTAGTAACTTGATCAAAGATACTTGAAAAGAACAATGGGTTCTCCTTTATTTTACTGTTCTCTGTAATTTCATGTTTCCCGTAACTCCCAGAAGTAAATTACGAGCGAAATATATTGT ]
[+] EMBL CF311138 [ GAGCAAAGAAGCGCATCCTTCTCATGGCGGCCTCCTCGTCGTCGGCGGCGGCGGCGGCGTTGTCGCCGGCGATCTCTCTTCACCTGCTCCGGCCGCTCCCGTGCAGAGCCGTACTCCTGTCCAGGCAACGGAGGCCATTTCCATCGCCAAGAGCTGGCTGCCTGGCGGCGGTAAGAGCTCAGCGGCGGTGGCTCCGGTCGCCGGAGATCGGCCGGTGGAGGAGGCGCGGGGGCTA ]
[+] EMBL CF305345 [ AGAAGCGCATCCTTCTCATGGCGGCCTCCTCGTCGTCGGCGGCGGCGGCGGCGTTGTCGCCGGCGATCTCTCTTCACCTGCTCCGGCCGCTCCCGTGCAGAGCCGTACTCCTGTCCAGGCAACGGAGGCCATTTCCATCGCCAAGAGCTGGCTGCCTGGCGGCGGTAAGAGCTCAGCGGCGGTGGCTCCGGTCGCCGGAGATCGGCCGGTGGAGGAGGCGCGGGGGCTACGCCTGCCTCTCCTTCAACTCCGGCAATAAGCCGCCTCCGCCTTCCAGTGAGAATTCAGACGAATGGCCAATCCTTCGCCGATGGGATGTGCCGTGGGAGTGGCAGACGGTGGTGCTCACCATGGTGGGCTGTGGAGTA AGCTTTGTTCTGACAGGATTGGTTGAGCAATCGGTTTTGACGTATGTGGGGTTTAGAGCTGTCGAGGCA ]
[+] EMBL CF307817 [ GCATCCTTCTCATGGCGGCCTCCTCGTCGTCGGCGGCGGCGGCGGCGTTGTCGCCGGCGATCTCTCTTCACCTGCTCCGGCCGCTCCCGTGCAGAGCCGTACTCCTGTCCAGGCAACGGAGGCCATTTCCATCGCCAAGAGCTGGCTGCCTGGCGGCGGTAAGAGCTCAGCGGCGGTGGCTCCGGTCGCCGGAGATCGGCCGGTGGAGGAGGCGCGGGGGCTACGCCTGCCTCTCCTTCAACTCCGGCAATAAGCCGCCTCCGCCTTCCAGTGAGAATTCAGACGAATGGCCAATCCTTCGCCGATGGGATGTGCCGTGGGAGTGGCAGACGGTGGTGCTCACC ]
[+] EMBL CB639742 [ GCGGCCTCCTCGTCGTCGGCGGCGGCGGCGGCGTTGTCGCCGGCGATCTCTCTTCACCTGCTCCGGCCGCTCCCGTGCAGAGCCGTACTCCTGTCCAGGCAACGGAGGCCATTTCCATCGCCAAGAGCTGGCTGCCTGGCGGCGGTAAGAGCTCAGCGGCGGTGGCTCCGGTCGCCGGAGATCGGCCGGTGGAGGAGGCGCGGGGGCTACGCCTGCCTCTCCTTCAACTCCGGCAATAAGCCGCCTCCGCCTTCCAGTGAGAATTCAGACGAATGGCCAATCCTTCGCCGATGGGATGTGCCGTGGGAGTGGCACACGGTGGTGCTCAC ]
[+] EMBL AU175021 [ GCCAATCCTTCGCCGATGGGATGTGCCGTGGGAGTGGCANACGGTGGTGCTCACCATGGTGGGCTGTGGAGTA AGCTTTGTTCTGACAGGATTGGTTGAGCAATCGGTTTTGACGTATGTGGGGTTTAGAGCTGTCGAGGCAACGGTAGATCAGAAGGCAGAAATACTTTTCCTTGGACAACTTAGCGTGACAGCAGTTGTGCTGGGTGTTGTATATGGCATCACCAATACCTTCCGACCACTGCCAGATGATATATTTCGTTATGATATTAAAGAACCATTCAAGCTTCAAAATGGCTGGCTTCTGTGGGCTGGAGTTGGTCTCTTTGGCGCTATAATTT CTATTGCTTTAGTTGGGGTTGCTATGACTTATCTGAATGGTGAACCTCCAGAAAGAGAGactg ]
[-] EMBL CA766637 [ tcaAAAATGGCTGGCTTCTGTGGGCTGGAGTTGGTCTCTTTGGCGCTATAATTTNCTATTGCTTTAGTTGGGGTTGCTATGACTTATCTGAATGGTGAACCTCCAGAAAGAGAGGTCAGGCCTTTTACATACTGTACTATATAGATTTTTCTCAGGCCATACAATTTTATTCCCATTTAATTAATTATTACCTCTCAATCTTTAGTTTTTAACTCACATTGTTTTAATCCCATTCATCATTAACCTCTAATTCAATTTGTTCAGCAAGAAAAAAAACACATCTTGGACCGCTTAATATTCATTAAACAATAACCTATAACAATATGCCAAATGGAGCAATTCATGCAATTTGTATTAGACCATTGTCTTTGATTACCCAACCCTTTTGGCTTGCCTTGCATGACCCTAGGTCTTATCTAATCACAATCTTCTCATGTATGGACTGGATTAAGCTGATTGTGATTAAACAATGACAACTCAAGGCTATCATATGGTCACTTGTGCAAGATTCAGATGGTAGGGAAGCCAGAAAGGTAGGTTTTCCATGAGTAGCATAGGAATTAGCAAATATGCCTATTCTCTTTGGTTTGAGATGAGACAGAGCATAATTAGGAACAGTTTGCGGCATAATTAAGATGGAATGTACCCTTTGATAAAGTGAAGCTTCATACACAAGGTTTATTCAATGCTTTGACTGACAAGCTTATGTGGTAAGGCCTCACTTTACATTGATAGGGGCTTACGCTTTTCCAAATT AATCTCAACATGTTTTGT ]
[-] EMBL CB643978 [ ACTGACAAGCTTATGTGGTAAGGCCTCACTTTACATTGATAGGGGCTTACGCTTTTCCAAATTGAATCTCAACATGTTTTGTGTACTTACCTCCTGTTATACTGATTACCTTTTTTCAGTGTGCTGTTTCTTGAGTCCTGATTGCTGATCTATTTCTCTGGACTTTTTTTTTCAGACTGACTCGTTAGTTCTTTTATTGCCATTAATCGGCTCATCAAGTGCCAGCACTGCTTTTCTGGTGGGCATTACTGGAGTTCTAGCACCAATTCTGGAGGAGACTGTGTTTCGAGGATTTTTAATGGTGTCCTTGACTAAGTGGTTTCCTACTCCAGTTTGCATACTTGTCAGTGCTGCTCTATTTGCCTTTGCTCATCTGACACCTGGACAATT CCCACAGTTGTTTATACTT GGTGTTGCGTT GGGTTTTTCATATGCTCAAA CCCATAATCTTCTAACTCCTATCAC AATACATGCATTTTGGAACTCGGGAGTAATATTACTGTTAACCTTTCTTCAGCTGCAAGGGTATGATATCAAGGAGCTTTTGGGAGCATCTTGAAGGCTTTGACTGATCAGCCTACGGCTTTGTGCATATGCTTTAGTAACTTGATCAAAGATACTTGAAAAGAACAATGGGTTCTCCTTTATTTTACTGTTCTCTGTAATTTCATGTTTCCCGTAACTCCCAGAAGTAAATTACGAGCGAAATATATTGTGTTTGTACTCATCTGCAATGATCTAACTTTAATCTACAAAAGGAAGCACAAACAG ]
[+] EMBL AA750453 [ TCAGACTGATTCGTTAGTTCTTTTATTGCCATTAATTGGCTCATCAAGTGCCAGCACTGCTTTTTTGGTGGGCATTACTGGAGTTCTAGCACCAATTCTGGAGGAGACTGTTTTTCGAGGATTTTAAATGGTGTCCTTGACTAAGTGGTTTCCTACTCCAG TTGCATACTTGTAAGTGCTGCTCTATTTGCCTTTCCTCATCTGACACCTGGACAATG CCCACA ]
[+] EMBL AU175020 [ ATACTTGTCAGTGCTGCTCTATTTGCCTTTGCTCATCTGACACCTGGACAATTCCCCNCAGTTGTTTATACTTGGGTGTTGCGTTGGGGTTTTTCATATGCTCAAACCCCATAATCTTCTAACTCCTATCCCAAATACATGCATTTTGGAACTCGGGAGTAATATTACTGTTAACCTTTCTTCAGCTGCAAGGGTATGATATCAAGGAGCTTTTGGGAGCATCTTGAAGGCTTTGACTGATCAGCCTACGGCTTTGTGCATATGCTTTAGTAACTTGATCAAAGATACTTGAAAAGAACAATGGGTTCTCCTTTATTTTACTGTTCTCTGTAATTTCATGTTTCCCGTAACTCCCAGAAGTAAATTACGAGCGAAATATATTGTGTTTGTACTCATCTGCAATGATCTAACTTTAATCTACAAAAGGAAGCACAAACAGCTTTCTATCAAAAAAAA]
consensusID : consensus_13532#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 836 fasta sequence
[GCCTCCTCGTCGTCGGCGGCGGCGGCGGCGTTGTCGCCGGCGATCTCTCTTCACCTGCTCCGGCCGCTCCCGTGCAGAGCCGTACTCCTGTCCAGGCAACGGAGGCCATTTCCATCGCCAAGAGCTGGCTGCCTCTCCTTCAACTCCGGCAATAAGCCGCCTCCGCCTTCCAGTGAGAATTCAGACGAATGGCCAATCCTTCGCCGATGGGATGTGCCGTGGGAGTGGCAGACGGTGGTGCTCACCATGGTGGGCTGTGGAGTAAGATATTAAAGAACCATTCAAGCTTCAAAATGGCTGGCTTCTGTGGGCTGGAGTTGGTCTCTTTGGCGCTATAATTTCTATTGCTTTAGTTGGGGTTGCTATGACTTATCTGAATGGTGAACCTCCAGAAAGAGAGGTCAGGCCTTTTACATACTGTACTATATAGATTTTTCTCAGGCCATACAATTTTATTCCCATTTAATTAATTATTACCTCTCAATCTTTAGTTTTTAACTCACATTGTTTTAATCCCATTCATCATTAACCTCTAATTCAATTTGTTCAGCAAGAAAAAAAACACATCTTGGACCGCTTAATATTCATTAAACAATAACCTATAACAATATGCCAAATGGAGCAATTCATGCAATTTGTATTAGACCATTGTCTTTGATTACCCAACCCTTTTGGCTTGCCTTGCATGACCCTAGGTCTTATCTAATCACAATCTTCTCATGTATGGACTGGATTAAGCTGATTGTGATTAACAATGACAACTCAAGGCTATCATATGGTCACTTGTGCAAGATTCAGATGGTAGGGAAGCCAGAAAGATAGGTTTTCCATGAGTA]
[+] EMBL CB643977 [GCCTCCTCGTCGTCGGCGGCGGCGGCGGCGTTGTCGCCGGCGATCTCTCTTCACCTGCTCCGGCCGCTCCCGTGCAGAGCCGTACTCCTGTCCAGGCAACGGAGGCCATTTCCATCGCCAAGAGCTGGCTGCCTCTCCTTCAACTCCGGCAATAAGCCGCCTCCGCCTTCCAGTGAGAATTCAGACGAATGGCCAATCCTTCGCCGATGGGATGTGCCGTGGGAGTGGCAGACGGTGGTGCTCACCATGGTGGGCTGTGGAGTAAGATATTAAAGAACCATTCAAGCTTCAAAATGGCTGGCTTCTGTGGGCTGGAGTTGGTCTCTTTGGCGCTATAATTTCTATTGCTTTAGTTGGGGTTGCTATGACTTATCTGAATGGTGAACCTCCAGAAAGAGAGGTCAGGCCTTTTACATACTGTACTATATAGATTTTTCTCAGGCCATACAATTTTATTCCCATTTAATTAATTATTACCTCTCAATCTTTAGTTTTTAACTCACATTGTTTTAATCCCATTCATCATTAACCTCTAATTCAATTTGTTCAGCAAGAAAAAAAACACATCTTGGACCGCTTAATATTCATTAAACAATAACCTATAACAATATGCCAAATGGAGCAATTCATGCAATTTGTATTAGACCATTGTCTTTGATTACCCAACCCTTTTGGCTTGCCTTGCATGACCCTAGGTCTTATCTAATCACAATCTTCTCATGTATGGACTGGATTAAGCTGATTGTGATTAACAATGACAACTCAAGGCTATCATATGGTCACTTGTGCAAGATTCAGATGGTAGGGAAGCCAGAAAGATAGGTTTTCCATGAGTA]
consensusID : consensus_13532#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 680 fasta sequence
[ATGATATTAAAGAACCATTCAAGCTTCAAAATGGCTGGCTTCTGTGGGCTGGAGTTGGTCTCTTTGGCGCTATAATTTCTATTGCTTTAGTTGGGGTTGCTATGACTTATCTGAATGGTGAACCTCCANGAAAGAGAGACTGACTCGTTAGTTTCTTTTATTGCCATTAATCGGCTCATCAAGTGCCAGCACTGCTTTTCTGGTGGGCATTACTGGAGTTCTAGCACCAATTCTGGAGGAGACTGTGTTTCGAGGATTTTTAATGGTGTCCTTGACTAAGTGGTTTCCTACTCCAGTTTGCATACTTGTCAGTGCTGCTCTATTTGCCTTTGCTCATCTGACACCTGGACAATTCCCACAGTTGTTTATACTTGGTGTTGCGTTGGGTTTTTCATATGCTCAAACCCATAATCTTCTAACTCCTATCACAATACATGCATTTTGGAACTCGGGAGTAATATTACTGTTAACCTTTCTTCAGCTGCAAGGGTATGATATCAAGGAGCTTTTGGGAGCATCTTGAAGGCTTTGACTGATCAGCCTACGGCTTTGTGCATATGCTTTAGTAACTTGATCAAAGATACTTGAAAAGAACAATGGGTTCTCCTTTATTTTACTGTTCTCTGTAATTTCATGTTTCCCGTAACTCCCAGAAGTAAATTACGAGCGAAATAAAAAAA]
[-] EMBL CF307818 [ATGATATTAAAGAACCATTCAAGCTTCAAAATGGCTGGCTTCTGTGGGCTGGAGTTGGTCTCTTTGGCGCTATAATTTCTATTGCTTTAGTTGGGGTTGCTATGACTTATCTGAATGGTGAACCTCCANGAAAGAGAGACTGACTCGTTAGTTTCTTTTATTGCCATTAATCGGCTCATCAAGTGCCAGCACTGCTTTTCTGGTGGGCATTACTGGAGTTCTAGCACCAATTCTGGAGGAGACTGTGTTTCGAGGATTTTTAATGGTGTCCTTGACTAAGTGGTTTCCTACTCCAGTTTGCATACTTGTCAGTGCTGCTCTATTTGCCTTTGCTCATCTGACACCTGGACAATTCCCACAGTTGTTTATACTTGGTGTTGCGTTGGGTTTTTCATATGCTCAAACCCATAATCTTCTAACTCCTATCACAATACATGCATTTTGGAACTCGGGAGTAATATTACTGTTAACCTTTCTTCAGCTGCAAGGGTATGATATCAAGGAGCTTTTGGGAGCATCTTGAAGGCTTTGACTGATCAGCCTACGGCTTTGTGCATATGCTTTAGTAACTTGATCAAAGATACTTGAAAAGAACAATGGGTTCTCCTTTATTTTACTGTTCTCTGTAATTTCATGTTTCCCGTAACTCCCAGAAGTAAATTACGAGCGAAATAAAAAAA]
consensusID : consensus_13532#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 368 fasta sequence
[AGTGGTTAATACTGGGTGTGGCGTGGGGTTTTTCAAAGGCTCAAACCCATATTTTTTTAATTCCTATCCCAATACAGGCATTTTGGAACTGGGAAGTAATATTACTGTTACCCTTTTTTCAGCTGCAAGGGTATAATATCAAGGAGCTTTTGGGAGCTTCTTGAAGGCTTTGATTGATCACCTTACGGCTTGGGGCATAGGCTTTAGTAACTTGATCAAAAATACTTGAAAAGACCAAGGGGTTCCCCTTAATTTAACGGTTCTCGGAAATTTCATGTTTCCGGTAACTCCCAAAAGTAAATTACGAGCGAAATATATGGTGTTGGTATTCATCGGCAAAAAAAAAAAAAAAAACCCCTGTCATGCGT]
[-] EMBL CF311139 [AGTGGTTAATACTGGGTGTGGCGTGGGGTTTTTCAAAGGCTCAAACCCATATTTTTTTAATTCCTATCCCAATACAGGCATTTTGGAACTGGGAAGTAATATTACTGTTACCCTTTTTTCAGCTGCAAGGGTATAATATCAAGGAGCTTTTGGGAGCTTCTTGAAGGCTTTGATTGATCACCTTACGGCTTGGGGCATAGGCTTTAGTAACTTGATCAAAAATACTTGAAAAGACCAAGGGGTTCCCCTTAATTTAACGGTTCTCGGAAATTTCATGTTTCCGGTAACTCCCAAAAGTAAATTACGAGCGAAATATATGGTGTTGGTATTCATCGGCAAAAAAAAAAAAAAAAACCCCTGTCATGCGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13532#2 ------------------------------------------------------------
consensus_13532#3 ------------------------------------------------------------
consensus_13532#0 CGAGCACTCGAGCTGAGAGCAAAGAAGCGCATCCTTCTCATGGCGGCCTCCTCGTCGTCG 60
consensus_13532#1 ------------------------------------------------------------
consensus_13532#2 ------------------------------------------------------------
consensus_13532#3 ------------------------------------------------------------
consensus_13532#0 GCGGCGGCGGCGGCGTTGTCGCCGGCGATCTCTCTTCACCTGCTCCGGCCGCTCCCGTGC 120
consensus_13532#1 ------------------------------------------------------------
consensus_13532#2 ------------------------------------------------------------
consensus_13532#3 ------------------------------------------------------------
consensus_13532#0 AGAGCCGTACTCCTGTCCAGGCAACGGAGGCCATTTCCATCGCCAAGAGCTGGCTGCCTG 180
consensus_13532#1 ------------------------------------------------------------
consensus_13532#2 ------------------------------------------------------------
consensus_13532#3 ------------------------------------------------------------
consensus_13532#0 GCGGCGGTAAGAGCTCAGCGGCGGTGGCTCCGGTCGCCGGAGATCGGCCGGTGGAGGAGG 240
consensus_13532#1 ------------------------------------------------------------
consensus_13532#2 ------------------------------------------------------------
consensus_13532#3 ------------------------------------------------------------
consensus_13532#0 CGCGGGGGCTACGCCTGCCTCTCCTTCAACTCCGGCAATAAGCCGCCTCCGCCTTCCAGT 300
consensus_13532#1 ------------------------------------------------------------
consensus_13532#2 ------------------------------------------------------------
consensus_13532#3 ------------------------------------------------------------
consensus_13532#0 GAGAATTCAGACGAATGGCCAATCCTTCGCCGATGGGATGTGCCGTGGGAGTGGCAGACG 360
consensus_13532#1 ------------------------------------------------------------
consensus_13532#2 ------------------------------------------------------------
consensus_13532#3 ------------------------------------------------------------
consensus_13532#0 GTGGTGCTCACCATGGTGGGCTGTGGAGTAAGCTTTGTTCTGACAGGATTGGTTGAGCAA 420
consensus_13532#1 ------------------------------------------------------------
consensus_13532#2 ------------------------------------------------------------
consensus_13532#3 ------------------------------------------------------------
consensus_13532#0 TCGGTTTTGACGTATGTGGGGTTTAGAGCTGTCGAGGCAACGGTAGATCAGAAGGCAGAA 480
consensus_13532#1 ------------------------------------------------------------
consensus_13532#2 ------------------------------------------------------------
consensus_13532#3 ------------------------------------------------------------
consensus_13532#0 ATACTTTTCCTTGGACAACTTAGCGTGACAGCAGTTGTGCTGGGTGTTGTATATGGCATC 540
consensus_13532#1 ------------------------------------------------------------
consensus_13532#2 ------------------------------------------------------------
consensus_13532#3 ------------------------------------------------------------
consensus_13532#0 ACCAATACCTTCCGACCACTGCCAGATGATATATTTCGTTATGATATTAAAGAACCATTC 600
consensus_13532#1 ------------------------------------------------------------
consensus_13532#2 ------------------------------------------------------------
consensus_13532#3 ------------------------------------------------------------
consensus_13532#0 AAGCTTCAAAATGGCTGGCTTCTGTGGGCTGGAGTTGGTCTCTTTGGCGCTATAATTTCT 660
consensus_13532#1 ------------------------------------------------------------
consensus_13532#2 ------------------------------------------------------------
consensus_13532#3 ------------------------------------------------------------
consensus_13532#0 ATTGCTTTAGTTGGGGTTGCTATGACTTATCTGAATGGTGAACCTCCAGAAAGAGAGGTC 720
consensus_13532#1 ------------------------------------------------------------
consensus_13532#2 ------------------------------------------------------------
consensus_13532#3 ------------------------------------------------------------
consensus_13532#0 AGGCCTTTTACATACTGTACTATATAGATTTTTCTCAGGCCATACAATTTTATTCCCATT 780
consensus_13532#1 ------------------------------------------------------------
consensus_13532#2 ------------------------------------------------------------
consensus_13532#3 ------------------------------------------------------------
consensus_13532#0 TAATTAATTATTACCCCTCAATCTTTAGTTTTTAACTCACATTGTTTTAATCCCATTCAT 840
consensus_13532#1 ------------------------------------------------------------
consensus_13532#2 ------------------------------------------------------------
consensus_13532#3 ------------------------------------------------------------
consensus_13532#0 CATTAACCTCTAATTCAATTTGTTCAGCAAGAAAAAAAACACATCTTGGACCGCTTAATA 900
consensus_13532#1 ------------------------------------------------------------
consensus_13532#2 ------------------------------------------------------------
consensus_13532#3 ------------------------------------------------------------
consensus_13532#0 TTCATTAAACAATAACCTATAACAATATGCCAAATGGAGCAATTCATGCAATTTGTAATA 960
consensus_13532#1 ------------------------------------------------------------
consensus_13532#2 ------------------------------------------------------------
consensus_13532#3 ------------------------------------------------------------
consensus_13532#0 GACCATTGTCTTTGATTACCCAACCCTTTTGGCTTGCCTTGCATGACCCTAGGTCTTATC 1020
consensus_13532#1 ------------------------------------------------------------
consensus_13532#2 ------------------------------------------------------------
consensus_13532#3 ------------------------------------------------------------
consensus_13532#0 TAATCACAATCTTCTCATGTATGGACTGGATTAAGCTGATTGTGATTAAACAATGACAAC 1080
consensus_13532#1 ------------------------------------------------------------
consensus_13532#2 ------------------------------------------------------------
consensus_13532#3 ------------------------------------------------------------
consensus_13532#0 TCAAGGCTATCATATGGTCACTTGTGCAAGATTCAGATGGTAGGGAAGCCAGAAAGATAG 1140
consensus_13532#1 ------------------------------------------------------------
consensus_13532#2 ------------------------------------------------------------
consensus_13532#3 ------------------------------------------------------------
consensus_13532#0 GTTTTCCATGAGTAGCATAGGAATTAGCAAATATGCCTATTCTCTTTGGTTTGAGATGAG 1200
consensus_13532#1 ------------------------------------------------------------
consensus_13532#2 ------------------------------------------------------------
consensus_13532#3 ------------------------------------------------------------
consensus_13532#0 ACAGCATAATTAGGAACAGTTTGCGGCATAATTAAGATGGAATGCACCCTTTGATAAAGT 1260
consensus_13532#1 ------------------------------------------------------------
consensus_13532#2 ------------------------------------------------------------
consensus_13532#3 ------------------------------------------------------------
consensus_13532#0 GAAGCTTCATACACAAGGTTTATTCAATGCTTTGACTGACAAGCTTATGTGGTAAGGCCT 1320
consensus_13532#1 ----------------------------------GCCTCCTCGTCGTCGGCGGCGGCGGC 26
consensus_13532#2 ----ATGATATTAAAGAACCATTCAAGCTTCAAAATGGCTGGCTTCTGTGGGCTGGAGTT 56
consensus_13532#3 ------------------------------------------------------------
consensus_13532#0 CACTTTACATTGATAGGGGCTTACGCTTTTCCAAATTGAATCTCAACATGTTTTGTGTAC 1380
consensus_13532#1 GGCGTTGTCGCCGGCGATCTCTCTTCACCTGCTCCGGCCGCTCCCGTGCAGAGCCGTACT 86
consensus_13532#2 GGTCTCTTTGGCGCTATA---ATTTCTATTGCTTTAGTTGGGGTTGCTATGACTTATCT- 112
consensus_13532#3 ------------------------------------------------------------
consensus_13532#0 TTACCTCCTGTTATACTG---ATTACCTTTTTTCAGTGTGCTGTTTCTTGAGTCCTGAT- 1436
consensus_13532#1 CCTGTCCAGGCAACGGAGGCCATTTCCATCGCCAAGAGCTGGCTGCCTCTCCTTCAACTC 146
consensus_13532#2 -----GAATGGTGAACCTCCANGAAAGAG-------AGACTGACTCGTTAGTTTCTTTTA 160
consensus_13532#3 ------------------------------------------------------------
consensus_13532#0 -----TGCTGATCTATTTCTCTGGGCTTTTTTTTTCAGACTGACTCGTTAGTT-CTTTTA 1490
consensus_13532#1 CGGCAATAAGCCGCCTCCGCCTTCCAGTGAGAATTCAGACGAATGGCCAATCCTTCGCCG 206
consensus_13532#2 TTGCCATTAATCGGCTCATCAAGTGCCAGCACTGCTTTTC-TGGTGGGCATTACTGGAGT 219
consensus_13532#3 ------------------------------------------------------------
consensus_13532#0 TTGCCATTAATCGGCTCATCAAGTGCCAGCACTGCTTTTC-TGGTGGGCATTACTGGAGT 1549
consensus_13532#1 ATGGGATGTGCCGTGGGAGTGGCAGACGGTGGTGCTCACCATGGTGGGCTGTGGAGTAAG 266
consensus_13532#2 TCTAGCACCAATTCTGGAGGAGACTGTGTTTCGAGGATTTTTAATGGTGTCCTTGACTAA 279
consensus_13532#3 ------------------------------------------------------------
consensus_13532#0 TCTAGCACCAATTCTGGAGGAGACTGTGTTTCGAGGATTTTTAATGGTGTCCTTGACTAA 1609
consensus_13532#1 ATATTAAAGAACCATTCAAGCTTCAAAATGGCTGGCTTCTGTGGGCTGGAGTTGGTCTCT 326
consensus_13532#2 GTGGTTTCCTACTCCAGTTTGCATACTTGTCAGTGCTGCTCTATTTGCCTTTGCTCATCT 339
consensus_13532#3 ------------------------------------------------------------
consensus_13532#0 GTGGTTTCCTACTCCAGTTTGCATACTTGTCAGTGCTGCTCTATTTGCCTTTGCTCATCT 1669
consensus_13532#1 TTGGCGCTATAATTTCTATTGCTT--TAGTTGGGGTTGCTATGACTTATCTGAATGGTGA 384
consensus_13532#2 GACACCTGGACAATTCCCACAGTTGTTTATACTTGGTGTTGCGTTGGGTTTTT------C 393
consensus_13532#3 --------------------AGTGGTTAATACTGGGTGTGGCGTGGGGTTTTT------C 34
consensus_13532#0 GACACCTGGACAATTCCCACAGTTGTTTATACTTGGTGTTGCGTTGGGTTTTT------C 1723
consensus_13532#1 ACCTCCAGAAAGAGAGGTCAGGCCTTTTACATACTGTACTATATAGATTTTTCTCAGGCC 444
* ** * * ** * * **** *
consensus_13532#2 ATATGCTCAAACCCATAATCTTCTAACTCCTATCACAATACATGCATTTTGGAACTCGGG 453
consensus_13532#3 AAAGGCTCAAACCCATATTTTTTTAATTCCTATCCCAATACAGGCATTTTGGAACTGGGA 94
consensus_13532#0 ATATGCTCAAACCCATAATCTTCTAACTCCTATCACAATACATGCATTTTGGAACTCGGG 1783
consensus_13532#1 ATACAATTTTATTCCCATTTAATTAATTATTACCTCTCAATCTTTAGTTTTTAACTC--A 502
* * * * * * * *** * ** * * * * *** ****
consensus_13532#2 AGTAATATTACTGTTAACCTTTCTTCAGCTGCAAGGGTATGATATCAAGGAGCTTTTGGG 513
consensus_13532#3 AGTAATATTACTGTTACCCTTTTTTCAGCTGCAAGGGTATAATATCAAGGAGCTTTTGGG 154
consensus_13532#0 AGTAATATTACTGTTAACCTTTCTTCAGCTGCAAGGGTATGATATCAAGGAGCTTTTGGG 1843
consensus_13532#1 CATTGTTTTAATCCCATTCATCATTAACCTCTAATTCAATTTGTTCAGCAAGAAAAAAAA 562
* * *** * * * * ** * ** ** ** *** **
consensus_13532#2 AGCATCTTGAAGGCTTTGAC--TGATCAGCCTACGGCTTTGTGCATATGCTTTAGTAACT 571
consensus_13532#3 AGCTTCTTGAAGGCTTTGAT--TGATCACCTTACGGCTTGGGGCATAGGCTTTAGTAACT 212
consensus_13532#0 AGCATCTTGAAGGCTTTGAC--TGATCAGCCTACGGCTTTGTGCATATGCTTTAGTAACT 1901
consensus_13532#1 CACATCTTGGACCGCTTAATATTCATTAAACAATAACCTATAACAATATGCCAAATGGAG 622
* ***** * ** * * ** * * * * ** * *
consensus_13532#2 TGATCAAAGATACTTGAAAAGAACAATGGGTTCTCCTTTATTTTACTGTTCT--CTGTAA 629
consensus_13532#3 TGATCAAAAATACTTGAAAAGACCAAGGGGTTCCCCTTAATTTAACGGTTCT--CGGAAA 270
consensus_13532#0 TGATCAAAGATACTTGAAAAGAACAATGGGTTCTCCTTTATTTTACTGTTCT--CTGTAA 1959
consensus_13532#1 CAATTCATGCAATTTGTATTAGACCATTGTCTTTGATT-ACCCAACCCTTTTGGCTTGCC 681
** * * *** * * * * * ** * ** ** * *
consensus_13532#2 TTTCATGTTTCCCG----TAACTC-CCAGAAGTAAATTACGAGCGAAATAAAAAAA---- 680
consensus_13532#3 TTTCATGTTTCCGG----TAACTC-CCAAAAGTAAATTACGAGCGAAATATATGGTGTTG 325
consensus_13532#0 TTTCATGTTTCCCG----TAACTC-CCAGAAGTAAATTACGAGCGAAATATATTGTGTTT 2014
consensus_13532#1 TTGCATGACCCTAGGTCTTATCTAATCACAATCTTCTCATGTATGGACTGGATTAAGCTG 741
** **** * * ** ** ** ** * * * * * * *
consensus_13532#2 ------------------------------------------------------------
consensus_13532#3 GTATTCATCGGCAAAAAAAAAAAAAAAAACCCCTGTCATGCGT----------------- 368
consensus_13532#0 GTACTCATCTGCAATGATCTAACTTTAATCTACAAAAGGAAGCACAAACAGCTTTCTATC 2074
consensus_13532#1 ATTGTGATTAACAATGACAACTCAAGGCTATCATATGGTCACTTGTGCAAGATTCAGATG 801
consensus_13532#2 -----------------------------------
consensus_13532#3 -----------------------------------
consensus_13532#0 AAAAAAAA--------------------------- 2082
consensus_13532#1 GTAGGGAAGCCAGAAAGATAGGTTTTCCATGAGTA 836
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||