These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13536#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 2193 fasta sequence [CATGTGTGGAGTCATCCAATGGTTCCTTCTCCCTTGCATCAGCTGGGGCTAAAAGTGTGTGTGCGACAGTGAGAGAGAGAGAGAGAGAGAGAGGAGAACTAATTTAATCCTAATCAGTTGCAGACTTGCAGAGCCCAAGAGAGGAGAGGAGATTCCAAGAGAAGAGATGAGATCCCACGAGATGAACAACTCTTCTTCTCGTTATGCGTCAGAGGAGGAGCGCGGCAGCAACAGCTTCCTCATCGAGAGCGAGGAGGAGGAGGAGGACGAGGAAGCCCACCCCCACTCCTCCATCCTCCTCAAGGATGCCGACTCCGACTCCGACTCCGACGACTCCTCCTGCGCTACCCCGCGCCCAAGCTCCTACGCCACCCACCAATGGCCGCAAAGCTACAGGCAATCAATCGACATTTATAGTAGCGTGCAGTCTCCCAACCTGAGCTTTTTGGGAACTCCAACTCTAAGCAGGCTCTCCAACTCATTCCTCACCAACTCTTTTCGTGGCAAAACCCCTGAAATTCTCTCTAATCTTGTCAAGCCACTTCTACGCCCATCATCTTCAAGCGACGACCAGCAGCAGCAGCAGCAGCATGACGATGATACCCGTAAGAGTTCCCAGTACCTGCTTCCCTCAAGAAAACCGTCTTTGCAACAGATCCCGGAGGATCAAAAACCATTGGTGCCGGCTCATGAGGTGCCGGCTTATCAACAATGCTCCTACACCCAGGCAGTGATGAATGGAATAAATGTTCTGTGTGGTGTGGGGATCCTATCGACTCCATATGCCATTAAACAGGGAGGCTGGCTTGGACTGGTGATACTTTGCTTATTTGCTGTGCTCGCTTGGTACACCGGAGTGCTCCTTCGACGTTGTCTGGACAGCAAGGAGGGTCTTGAGACATACCCTGATATTGGTCATGCCGCCTTTGGCACCACTGGACGTATAGCAATCTCGATAATCCTGTACATCGAACTGTATGCCTGTTGCATTGAGTATTTGATATTGGAGAGCGACAATTTGTCAAAGTTATTCCCCAATGCACATCTAACCATTGGGAGCATGACACTAAACTCTCATGTGTTCTTCGCAATCTTGACCACCCTCATAGTCATGCCAACCACTTGGCTCCGCGACCTTAGCTGTCTGAGTTATCTTTCAGCTGGGGGTGTCATTGCATCAATCCTTGTAGTTGTCTGCCTATGCTGGGTTGGGGTTGTTGACCATGTTGGTTTTGAGAACAAAGGGACTGCACTGAATCTCCCAGGAATTCCCATCGCAATTGGACTGTATGGTTATTGCTACTCAGGACATGGTGTGTTCCCGAACATCTATTCTTCTCTGAAGAATCGCAACCAGTTTCCTTCTATTCTTTTCACTTGTATTGGG-TTGTCCTCAATTTTGTTTGCCGGTGCTGCTGTGATGGGATATAAGATGTTTGGTGAGTCCACTGAATCTCAGTTCACGCTGAACTTACCAGAGAATTTGGTGGTTTCAAAGGTTGCTGTCTGGACCACGGTGGCAAATCCAATAACCAAATATGCATTGACCATAACCCCATTGGCTATGAGTTTGGAAGAATTGCTGCCTCCAAATCAGCAGAAGTATGCGAACATAATCATGCTTAGATCCTCCCTGGTGGTCTCAACCCTCCTCATTGCTCTATCTGTCCCCTTCTTTGGGCTAGTTATGGCGTTGGTTGGTTCTTTACTCACCATGCTTGTGACCTACATCCTTCCATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAGATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTGGGGACATACTCATCCCTCTCCAAGATTATCCAGAACTACACCTGACCTGAGTGGCCAGCTGAGGAACGGAGCACTAGCTGCTTATGTAGTAATAAGAAAATAATTAATCATCCTTCTATAGCCCTGCACATACCGGAACAAAGTTTTGCCCGGGAACTGGAGT-CGACTTGATCAATTATATATGTATAATATAATTAGTTTGGATCGTTTGTTTAATTTGTGGCAACTCCAGGCATGTTAATGTATAATTAACGAT-AAAAACACCACAGTACCA-CATAGT-GGAGTTTTGTTAATGATAAAAATAAAATAATGCTATACATAAAAAATGATCGATATTACAGACCAATATAAAAAAA] [+] EMBL AK074023 [CATGTGTGGAGTCATCCAATGGTTCCTTCTCCCTTGCATCAGCTGGGGCTAAAAGTGTGTGTGCGACAGTGAGAGAGAGAGAGAGAGAGAGAGGAGAACTAATTTAATCCTAATCAGTTGCAGACTTGCAGAGCCCAAGAGAGGAGAGGAGATTCCAAGAGAAGAGATGAGATCCCACGAGATGAACAACTCTTCTTCTCGTTATGCGTCAGAGGAGGAGCGCGGCAGCAACAGCTTCCTCATCGAGAGCGAGGAGGAGGAGGAGGACGAGGAAGCCCACCCCCACTCCTCCATCCTCCTCAAGGATGCCGACTCCGACTCCGACTCCGACGACTCCTCCTGCGCTACCCCGCGCCCAAGCTCCTACGCCACCCACCAATGGCCGCAAAGCTACAGGCAATCAATCGACATTTATAGTAGCGTGCAGTCTCCCAACCTGAGCTTTTTGGGAACTCCAACTCTAAGCAGGCTCTCCAACTCATTCCTCACCAACTCTTTTCGTGGCAAAACCCCTGAAATTCTCTCTAATCTTGTCAAGCCACTTCTACGCCCATCATCTTCAAGCGACGACCAGCAGCAGCAGCAGCAGCATGACGATGATACCCGTAAGAGTTCCCAGTACCTGCTTCCCTCAAGAAAACCGTCTTTGCAACAGATCCCGGAGGATCAAAAACCATTGGTGCCGGCTCATGAGGTGCCGGCTTATCAACAATGCTCCTACACCCAGGCAGTGATGAATGGAATAAATGTTCTGTGTGGTGTGGGGATCCTATCGACTCCATATGCCATTAAACAGGGAGGCTGGCTTGGACTGGTGATACTTTGCTTATTTGCTGTGCTCGCTTGGTACACCGGAGTGCTCCTTCGACGTTGTCTGGACAGCAAGGAGGGTCTTGAGACATACCCTGATATTGGTCATGCCGCCTTTGGCACCACTGGACGTATAGCAATCTCGATAATCCTGTACATCGAACTGTATGCCTGTTGCATTGAGTATTTGATATTGGAGAGCGACAATTTGTCAAAGTTATTCCCCAATGCACATCTAACCATTGGGAGCATGACACTAAACTCTCATGTGTTCTTCGCAATCTTGACCACCCTCATAGTCATGCCAACCACTTGGCTCCGCGACCTTAGCTGTCTGAGTTATCTTTCAGCTGGGGGTGTCATTGCATCAATCCTTGTAGTTGTCTGCCTATGCTGGGTTGGGGTTGTTGACCATGTTGGTTTTGAGAACAAAGGGACTGCACTGAATCTCCCAGGAATTCCCATCGCAATTGGACTGTATGGTTATTGCTACTCAGGACATGGTGTGTTCCCGAACATCTATTCTTCTCTGAAGAATCGCAACCAGTTTCCTTCTATTCTTTTCACTTGTATTGGG TTGTCCTCAATTTTGTTTGCCGGTGCTGCTGTGATGGGATATAAGATGTTTGGTGAGTCCACTGAATCTCAGTTCACGCTGAACTTACCAGAGAATTTGGTGGTTTCAAAGGTTGCTGTCTGGACCACGGTGGCAAATCCAATAACCAAATATGCATTGACCATAACCCCATTGGCTATGAGTTTGGAAGAATTGCTGCCTCCAAATCAGCAGAAGTATGCGAACATAATCATGCTTAGATCCTCCCTGGTGGTCTCAACCCTCCTCATTGCTCTATCTGTCCCCTTCTTTGGGCTAGTTATGGCGTTGGTTGGTTCTTTACTCACCATGCTTGTGACCTACATCCTTCCATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAGATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTGGGGACATACTCATCCCTCTCCAAGATTATCCAGAACTACACCTGACCTGAGTGGCCAGCTGAGGAACGGAGCACTAGCTGCTTATGTAGTAATAAGAAAATAATTAATCATCCTTCTATAGCCCTGCACATACCGGAACAAAGTTTTGCCCGGGAACTGGAGT CGACTTGATCAATTATATATGTATAATATAATTAGTTTGGATCGTTTGTTTAATTTGTGGCAACTCCAGGCATGTTAATGTATAATTAACGAT AAAAACACCACAGTACCA CATAGT GGAGTTTTGTTAATGATAAAAAT ] [+] EMBL CB640041 [ TAAAA TGTGTGTGCGACAGTGAGAGAGAGAGAGAGAGAGAGAGGAGAACTAATTTAATCCTAATCAGTTGCAGACTTGCAGAGCCCAAGAGAGGAGAGGAGATTCCAAGAGAAGAGATGAGATCCCACGAGATGAACAACTCTTCTTCTCGTTATGCGTCAGAGGAGGAGCGCGGTTTCTACAGCTTCCTCATCGAGAGCGAGGAGGAGGAGGAGGACGAGGAAGCCCACCCCCACTCCTCCATCCTCCTCAAGGATGCCGACTCCGACTCCGACTCCGACGACTCCTCCTGCGCTACCCCGCGCCCAAGCTCCTACGCCACCCACCAATGGCCGCAAAGCTACAGGCAATCAATCGACATTTATAGTAGCGTGCAGTCTCCCAACCTGAGCTTTTTGGGAACTCCAACTCTAAGCAGGCTCTCCAACTCATTCCTCACCAACTCTTTTCGTGGCAAAACCCCTGAAATTCTCTCTAATCTTGTCAAGCCACTTCTA ] [-] EMBL CB674719 [ CATCGCAATTGGACTGTATGGTTATTGCTACTCAGGACATGGTGTGTTCCCGAACATCTATTCTTCTCTGAAGAATCGCAACCAGTTTCCTTCTATTCTTTTCACTTGTATTGGG TTGTCCTCAATTTTGTTTGCCGGTGCTGCTGTGATGGGATATAAGATGTTTGGTGAGTCCACTGAATCTCAGTTCACGCTGAACTTACCAGAGAATTTGGTGGTTTCAAAGGTTGCTGTCTGGACCACGGTGGCAAATCCAATAACCAAATATGCATTGACCATAACCCCATTGGCTATGAGTTTGGAAGAATTGCTGCCTCCAAATCAGCAGAAGTATGCGAACATAATCATGCTTAGATCCTCCCTGGTGGTCTCAACCCTCCTCATTGCTCTATCTGTCCCCTTCTTTGGGCTAGTTATGGCGTTGGTTGGTTCTTTACTCACCATGCTTGTGACCTACATCCTTCCATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAGATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTGGGGACATACTCATCCCTCTCCAAGATTATCCAGAACTACACCTGACCTGAGTGGCCAGCTGAGGAACGGAGCACTAGCTGCTTATGTAGTAATAAGAAAATAATTAATCATCCTTCTATAGCCCTGCACATACCGGAACAAAGTTTTGCCCGGGAACTGGAGT CGACTTGATCAATTATATATGTATAATATAATTAGTTTGGATCGTTTGTT ] [-] EMBL CB659593 [ CCTTCTATTCTTTTCAC TGTATGGGGNTTGTCCTCAATTTTGTTTGCCGGTGCTGCTGTGATGGGATATAAGATGTTTGGTGAGTCCACTGAATCTCAGTTCACGCTGAACTTACCAGAGAATTTGGTGGTTTCAAAGGTTGCTGTCTGGACCACGGTGGCAAATCCAATAACCAAATATGCATTGACCATAACCCCATTGGCTATGAGTTTGGAAGAATTGCTGCCTCCAAATCAGCAGAAGTATGCGAACATAATCATGCTTAGATCCTCCCTGGTGGTCTCAACCCTCCTCATTGCTCTATCTGTCCCCTTCTTTGGGCTAGTTATGGCGTTGGTTGGTTCTTTACTCACCATGCTTGTGACCTACATCCTTCCATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAGATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTGGGGACATACTCATCCCTCTCCAAGATTATCCAGAACTACACCTGACCTGAGTGGCCAGCTGAGGAACGGAGCACTAGCTGCTTATGTAGTAATAAGAAAATAATTAATCATCCTTCTATAGCCCTGCACATACCGGAACAAAGTTTTGCCCGGGAACTGGAGT CGACTTGATCAATTATATATGTATAATATAATTAGTTTGGATCGTTTGTTTAATTTGTGGCAACTCCAGGCATGTTAATGTATAATTAACGAT AAAAACACCAC ] [+] EMBL CA766182 [ TTGTCCTCAATTTTGTTTGCCGGTGCTGCTGTGATGGGATATAAGATGTTTGGTGAGTCCACTGAATCTCAGTTCACGCTGAACTTACCAGAGAATTTGGTGGTTTCAAAGGTTGCTGTCTGGACCACGGTGGCAAATCCAATAACCAAATATGCATTGACCATAACCCCATTGGCTATGAGTTTGGAAGAATTGCTGCCTCCAAATCAGCAGAAGTATGCGAACATAATCATGCTTAGATCCTCCCTGGTGGTCTCAACCCTCCTCATTGCTCTATCTGTCCCCTTCTTTGGGCTAGTTATGGCGTTGGTTGGTTCTTTACTCACCATGCTTGTGACCTACATCCTTCCATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAGATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTGGGGACATACTCATCCCTCTCCAAGATTATCCAGAACTACACCTGACCTGAGTGGCCAGCTGAGGAACGGAGCACTAGCTGCTTATGTAGTAATAAGAAAATAATTAATCATCCTTCTATAGCCCTGCACATACCGGAACAAAGTTTTGCCCGGGAACTGGAGT CGACTTGATCAATTATATATGTATAATATAATTAGNTTGGATCGTTTGTTTAATTTGTGGCAACTCCAGGCATGTTAATGTATAATTAACGATAAAAAACACCACAGTACCA CATAGTGGGAGTTTTGNTAATGATAAAAAATAAATAATGCTATACAT ] [-] EMBL CB655856 [ TTTGTTTGCCGGTGCTGCTGTGATGGGATATAAGATGTTTGGTGAGTCCACTGAATCTCAGTTCACGCTGAACTTACCAGAGAATTTGGTGGTTTCAAAGGTTGCTGTCTGGACCACGGTGGCAAATCCAATAACCAAATATGCATTGACCATAACCCCATTGGCTATGAGTTTGGAAGAATTGCTGCCTCCAAATCAGCAGAAGTATGCGAACATAATCATGCTTAGATCCTCCCTGGTGGTCTCAACCCTCCTCATTGCTCTATCTGTCCCCTTCTTTGGGCTAGTTATGGCGTTGGTTGGTTCTTTACTCACCATGCTTGTGACCTACATCCTTCCATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAGATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTGGGGACATACTCATCCCTCTCCAAGATTATCCAGAACTACACCTGACCTGAGTGGCCAGCTGAGGAACGGAGCACTAGCTGCTTATGTAGTAATAAGAAAATAATTAATCATCCTTCTATAGCCCTGCACATACCGGAACAAAGTTTTGCCCGGGAACTGGAGT CGACTTGATCAATTATATATGTATAATATAATTAGTTTGGATCGTTTGTTTAATTTGTGGCAACTCCAGGCATGTTAATGTATAATTAACGAT AAAAACACCACAGTACCAGCATAGT GGAGTTTTGTTAATGATAAAAATAAA ] [+] EMBL BM419436 [ AAGTAT CGAACATAATCATGCTTAGATCCTCCCTGGTGGTCTCAACCCTCCTCATTGCTCTATCTGTCCCCTTCTTTGGGCTAGTTATGGCGTTGGTTGGTTCTTTACTCACCATGCTTGTGACCTACATCCTTCCATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAGATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTGGGGACATACTCATCCCTCTCCAAGATTATCCATAACTACACCTGACCTGAGTGGCCAGCTGAGGAACGGAGCACTAGCTGCTTATGTAGTAATAAGAAAATAATTAATCATCCTTCTATAGCCCTGCACATACCGGAACAAAGTTTTGCCCGGGAACTGGAGT CGACTTGATCAATTATATATGTATAATATAATTAGTTTGGATCGTTTGTTTAATTTGTGGCAACTCCAGGCATGTTAATGTATAATTAACGAT AAAAACNCCNCAGTACCA CATAGT GGAGTTTTGTTAATGATAAAAAT AAATAATGCT TAAAAAAAAAA ] [+] EMBL BM420842 [ ATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTGGGGACATACTCATCCCTCTCCAAGATTATCCATAACTACACCTGACCTGAGTGGCCAGCTGAGGAACGGAGCACTAGCTGCTTATGTAGTAATAAGAAAATAATTAATCATCCTTCTATAGCCCTGCACATACCGGAACAAAGTTTTGCCCGGGAACTGGAGT CGACTTGATCAATTATATATGTATAATATAATTAGTTTGGATCGTTTGTTTAATTTGTGGCAACTCCAGGCATGTTAATGTATAATTAACGAT AAACACC C GTACCA CATAGT GGAGTTTTGTTAATGATAAAAAT AAATAATGCTATACATGGTGTATGATCGATATTACAGACCAATATAAAAAAA] [-] EMBL AA750350 [ GAAAATAATTAATCATCCTTCTATAGCCCTGCACATACCGGAACAAAGTTTTGCCCGGGAACTGGAGTCCGACTTGATCAATTATATATGTATAATATNATTAGTTTGGATCGTTTATTTAATTTGTGGCAACNCCAGGCATGTTAATGTATNATTAACGAT AAAAACACCACAGTACCA CATAGT GGAGTTTTGTTAATNATAAAAATA ] consensusID : consensus_13536#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1051 fasta sequence [TGCAGACTTGCAGAGCCCAAGAGAGGAGAGGAGATTCCAAGAGAAGAGATGAGATCCCACGAGATGAACAACTCTTCTTCTCGTTATGCGTCAGAGGAGGAGCGCGGCAGCAACAGCTTCCTCATCGAGAGCGAGGAGGAGGAGGAGGACGAGGAAGCCCACCCCCACTCCTCCATCCTCCTCAAGGATGCCGACTCCGACTCCGACTCCGACGACTCCTCCTGCGCTACCCCGCGCCCAAGCTCCTACGCCACCCACCAATGGCCGCAAAGCTACAGGCAATCAATCGACATTTATAGTAGCGTGCAGTCTCCCAACCTGAGCTTTTTGGGAACTCCAACTCTAAGCAGGCTCTCCAACTCATTCCTCACCAACTCTTTTCGTGGCAAAACCCCTGAAATTCTCTCTAATCTTGTCAAGCCACTTCTACGCCCATCATTTTCAAGCGACGACCAGCAGCAGCAGCAGCAGCATGACGATGATACCCGTAAGAGTTCCCAGTACCTGCTTCCCTCAAGAAAACCGTCTTTGCAACAGATCCCGGAGGATCAAAAACCATTGGTGCCGGCTCATGAGGTGCCGGCTTATCAACAATGCTCCTACACCCAGGCAGTGATGAATGGAATAAATGTTCTGTGTGGTGTGGGGATCCTATCGACTCCTCATTGCTCTATCTGTCCCCTTCTTTGGGCTAGTTATGGCGTTGGTTGGTTCTTTACTCACCATGCTTGTGACCTACATCCTTCCATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAGATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTGGGGACATACTCATCCCTCTCCAAGATTATCCAGAACTACACCTGACCTGAGTGGCCAGCTGAGGAACGGAGCACTAGCTGCTTATGTAGTAATAAGAAAATAATTAATCATCCTTCTATAGCCCTGCACATACCGGAACAAAGTTTTGCCCGGGAACTGGAGTCGACTTGATCAATTATATATGTATAATATAATTAGTTTGGA] [+] EMBL AK061115 [TGCAGACTTGCAGAGCCCAAGAGAGGAGAGGAGATTCCAAGAGAAGAGATGAGATCCCACGAGATGAACAACTCTTCTTCTCGTTATGCGTCAGAGGAGGAGCGCGGCAGCAACAGCTTCCTCATCGAGAGCGAGGAGGAGGAGGAGGACGAGGAAGCCCACCCCCACTCCTCCATCCTCCTCAAGGATGCCGACTCCGACTCCGACTCCGACGACTCCTCCTGCGCTACCCCGCGCCCAAGCTCCTACGCCACCCACCAATGGCCGCAAAGCTACAGGCAATCAATCGACATTTATAGTAGCGTGCAGTCTCCCAACCTGAGCTTTTTGGGAACTCCAACTCTAAGCAGGCTCTCCAACTCATTCCTCACCAACTCTTTTCGTGGCAAAACCCCTGAAATTCTCTCTAATCTTGTCAAGCCACTTCTACGCCCATCATTTTCAAGCGACGACCAGCAGCAGCAGCAGCAGCATGACGATGATACCCGTAAGAGTTCCCAGTACCTGCTTCCCTCAAGAAAACCGTCTTTGCAACAGATCCCGGAGGATCAAAAACCATTGGTGCCGGCTCATGAGGTGCCGGCTTATCAACAATGCTCCTACACCCAGGCAGTGATGAATGGAATAAATGTTCTGTGTGGTGTGGGGATCCTATCGACTCCTCATTGCTCTATCTGTCCCCTTCTTTGGGCTAGTTATGGCGTTGGTTGGTTCTTTACTCACCATGCTTGTGACCTACATCCTTCCATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAGATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTGGGGACATACTCATCCCTCTCCAAGATTATCCAGAACTACACCTGACCTGAGTGGCCAGCTGAGGAACGGAGCACTAGCTGCTTATGTAGTAATAAGAAAATAATTAATCATCCTTCTATAGCCCTGCACATACCGGAACAAAGTTTTGCCCGGGAACTGGAGTCGACTTGATCAATTATATATGTATAATATAATTAGTTTGGA] consensusID : consensus_13536#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 867 fasta sequence [ATCTTGTATAGGAGGAGGACTGCAGTTGCAGACTTGCAGAGCCCAAGAGAGGAGAGGAGATTCCAAGAGAAGAGATGAGATCCCACGAGATGAACAACTCTTCTTCTCGTTATGCGTCAGAGGAGGAGCGCGGCAGCAACAGCTTCCTCATCGAGAGCGAGGAGGAGGAGGAGGACGAGGAAGCCCACCCCCACTCCTCCATCCTCCTCAAGGATGCCGACTCCGACTCCGACTCCGACGACTCCTCCTGCGCTACCCCGCGCCCAAGCTCCTACGCCACCCACCAATGGCCGCAAAGCTACAGGCAATCAATCGACATTTATAGTAGCGTGCAGTCTCCCAACCTGAGCTTTTTGGGAACTCCAACTCTAAGCAGGCTCTCCAACTCATTCCTCACCAACTCTTTTCGTGGCAAAACCCCTGAAATTCTCTCTAATCTTGTCAAGCCACTTCTACGCCCATCATCTTCAAGCGACGACCAGCAGCAGCAGCAGCAGCATGACGATGATACCCGTAAGAGTTCCCAGTACCTGCTTCCCTCAAGAAAACCGTCTTTGCAACAGATCCCGGAGGATCAAAAACCATTGGTGCCGGCTCATGAGGTGCCGGCTTATCAACAATGCTCCTACACCCAGGCAGTGATGAATGGAATAAATGTTCTGTGTGGTGTGGGGATCCTATCGACTCCATATGCCATTAAACAGGGAGGCTGGCTTGGACTGGTGATACTTTGCTTATTTGCTGTGCTCGCTTGGTACACCGGAGTGCTCCTTCGACGTTGTCTGGACAGCAAGGAGGGTCTTGAGACATACCCTGATATTGGTCATGCCGCCTTTGGCACCACTGGACGTATAGCAATCTCGATAA] [+] EMBL CB655855 [ATCTTGTATAGGAGGAGGACTGCAGTTGCAGACTTGCAGAGCCCAAGAGAGGAGAGGAGATTCCAAGAGAAGAGATGAGATCCCACGAGATGAACAACTCTTCTTCTCGTTATGCGTCAGAGGAGGAGCGCGGCAGCAACAGCTTCCTCATCGAGAGCGAGGAGGAGGAGGAGGACGAGGAAGCCCACCCCCACTCCTCCATCCTCCTCAAGGATGCCGACTCCGACTCCGACTCCGACGACTCCTCCTGCGCTACCCCGCGCCCAAGCTCCTACGCCACCCACCAATGGCCGCAAAGCTACAGGCAATCAATCGACATTTATAGTAGCGTGCAGTCTCCCAACCTGAGCTTTTTGGGAACTCCAACTCTAAGCAGGCTCTCCAACTCATTCCTCACCAACTCTTTTCGTGGCAAAACCCCTGAAATTCTCTCTAATCTTGTCAAGCCACTTCTACGCCCATCATCTTCAAGCGACGACCAGCAGCAGCAGCAGCAGCATGACGATGATACCCGTAAGAGTTCCCAGTACCTGCTTCCCTCAAGAAAACCGTCTTTGCAACAGATCCCGGAGGATCAAAAACCATTGGTGCCGGCTCATGAGGTGCCGGCTTATCAACAATGCTCCTACACCCAGGCAGTGATGAATGGAATAAATGTTCTGTGTGGTGTGGGGATCCTATCGACTCCATATGCCATTAAACAGGGAGGCTGGCTTGGACTGGTGATACTTTGCTTATTTGCTGTGCTCGCTTGGTACACCGGAGTGCTCCTTCGACGTTGTCTGGACAGCAAGGAGGGTCTTGAGACATACCCTGATATTGGTCATGCCGCCTTTGGCACCACTGGACGTATAGCAATCTCGATAA] [+] EMBL CB674718 [ TGCAGACTTGCAGAGCCCAAGAGAGGAGAGGAGATTCCAAGAGAAGAGATGAGATCCCACGAGATGAACAACTCTTCTTCTCGTTATGCGTCAGAGGAGGAGCGCGGCAGCAACAGCTTCCTCATCGAGAGCGAGGAGGAGGAGGAGGACGAGGAAGCCCACCCCCACTCCTCCATCCTCCTCAAGGATGCCGACTCCGACTCCGACTCCGACGACTCCTCCTGCGCTACCCCGCGCCCAAGCTCCTACGCCACCCACCAATGGCCGCAAAGCTACAGGCAATCAATCGACATTTATAGTAGCGTGCAGTCTCCCAACCTGAGCTTTTTGGGAACTCCAACTCTAAGCAGGCTCTCCAACTCATTCCTCACCAACTCTTTTCGTGGCAAAACCCCTGAAATTCTCTCTAATCTTGTCAAGCCACTTCTACGCCCATCATCTTCAAGCGACGACCAGCAGCAGCAGCAGCAGCATGACGATGATACCCGTAAGAGTTCCCAGTACCTGCTTCCCTCAAGAAAACCGTCTTTGCAACAGATCCCGGAGGATCAAAAACCATTGGTGCCGGCTCATGAGGTGCCGGCTTATCAACAATGCTCCTACACCCAGGCAGTGATGAATGGAATAAATGTTCTGTGTGGTGTGGGGATCCTATCGACTCCATATGCCATTAAACAGGGAGGCTGGCTTGGACTGGTGATACTTTGCTTATTTGCTGTGCTCGCTTGGTACACCGGAGTGCTCCTTCGACGTTGTCTGGACAGCAAGGAGGGTCTTGAGACATACCCTGAT ] consensusID : consensus_13536#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 312 fasta sequence [GNATGTAGACTAATTTAATCCGAATCAGTTNCAGACTTGCAGAGCCCAAGAGAGGAGAGGAGATTCCAAGAGAAGAGATGAGATCCCACGAGATGAACAACTCTTCTTCTCGTNATGCGTCAGAGGAGGAGCGCGGCACAACAGCTTNCNCATCGAGAGCGNNGGAGNAGGAGGNGGACGAGGAAGCCCACCNANTACTNCTNCATCNTTCNGANAGGATGNCNGNNTNCNACTTNCNNCTGCNNCGANTCANCCTGNNGTTTAGNNNNGNGTNCAAGTTNATNTNNNGNNCANNTCTTNGNGCNNGTANTA] [+] EMBL OSC14353 [GNATGTAGACTAATTTAATCCGAATCAGTTNCAGACTTGCAGAGCCCAAGAGAGGAGAGGAGATTCCAAGAGAAGAGATGAGATCCCACGAGATGAACAACTCTTCTTCTCGTNATGCGTCAGAGGAGGAGCGCGGCACAACAGCTTNCNCATCGAGAGCGNNGGAGNAGGAGGNGGACGAGGAAGCCCACCNANTACTNCTNCATCNTTCNGANAGGATGNCNGNNTNCNACTTNCNNCTGCNNCGANTCANCCTGNNGTTTAGNNNNGNGTNCAAGTTNATNTNNNGNNCANNTCTTNGNGCNNGTANTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13536#0 CATGTGTGGAGTCATCCAATGGTTCCTTCTCCCTTGCATCAGCTGGGGCTAAAAGTGTGT 60 consensus_13536#2 ------------------------------------------------------------ consensus_13536#1 ------------------------------------------------------------ consensus_13536#3 ------------------------------------------------------------ consensus_13536#0 GTGCGACAGTGAGAGAGAGAGAGAGAGAGAGAGGAGAACTAATTTAATCCTAATCAGTTG 120 consensus_13536#2 -------------------ATCTTGTATAGGAGGAGGACTG-------------CAGTTG 28 consensus_13536#1 ----------------------------------------------------------TG 2 consensus_13536#3 -----------------------------GNATGTAGACTAATTTAATCCGAATCAGTTN 31 * consensus_13536#0 CAGACTTGCAGAGCCCAAGAGAGGAGAGGAGATTCCAAGAGAAGAGATGAGATCCCACGA 180 consensus_13536#2 CAGACTTGCAGAGCCCAAGAGAGGAGAGGAGATTCCAAGAGAAGAGATGAGATCCCACGA 88 consensus_13536#1 CAGACTTGCAGAGCCCAAGAGAGGAGAGGAGATTCCAAGAGAAGAGATGAGATCCCACGA 62 consensus_13536#3 CAGACTTGCAGAGCCCAAGAGAGGAGAGGAGATTCCAAGAGAAGAGATGAGATCCCACGA 91 ************************************************************ consensus_13536#0 GATGAACAACTCTTCTTCTCGTTATGCGTCAGAGGAGGAGCGCGGCAGCAACAGCTTCCT 240 consensus_13536#2 GATGAACAACTCTTCTTCTCGTTATGCGTCAGAGGAGGAGCGCGGCAGCAACAGCTTCCT 148 consensus_13536#1 GATGAACAACTCTTCTTCTCGTTATGCGTCAGAGGAGGAGCGCGGCAGCAACAGCTTCCT 122 consensus_13536#3 GATGAACAACTCTTCTTCTCGTNATGCGTCAGAGGAGGAGCGCGGCA-CAACAGCTTNCN 150 ********************** ************************ ********* * consensus_13536#0 CATCGAGAGCGAGG-AGGAGGAGGAGGACGAGGAAGCCCACCC-CCACTCCTCCATCCTC 298 consensus_13536#2 CATCGAGAGCGAGG-AGGAGGAGGAGGACGAGGAAGCCCACCC-CCACTCCTCCATCCTC 206 consensus_13536#1 CATCGAGAGCGAGG-AGGAGGAGGAGGACGAGGAAGCCCACCC-CCACTCCTCCATCCTC 180 consensus_13536#3 CATCGAGAGCGNNGGAGNAGGAGGNGGACGAGGAAGCCCACCNANTACTNCTNCATCNTT 210 *********** * ** ****** ***************** *** ** **** * consensus_13536#0 CTCAA-GGATGCCG-ACTCCGACT-CCGACTCCGACGACTCCTCCTGCGCT---ACCCCG 352 consensus_13536#2 CTCAA-GGATGCCG-ACTCCGACT-CCGACTCCGACGACTCCTCCTGCGCT---ACCCCG 260 consensus_13536#1 CTCAA-GGATGCCG-ACTCCGACT-CCGACTCCGACGACTCCTCCTGCGCT---ACCCCG 234 consensus_13536#3 CNGANAGGATGNCNGNNTNCNACTTNCNNCTGCNNCGANTCANCCTGNNGTTTAGNNNNG 270 * * ***** * * * *** * ** * *** ** **** * * consensus_13536#0 CGCCCAAGCTCCTACGCCACCCACCAATGGCCGCAAAGCTACAGGCAATCAATCGACATT 412 consensus_13536#2 CGCCCAAGCTCCTACGCCACCCACCAATGGCCGCAAAGCTACAGGCAATCAATCGACATT 320 consensus_13536#1 CGCCCAAGCTCCTACGCCACCCACCAATGGCCGCAAAGCTACAGGCAATCAATCGACATT 294 consensus_13536#3 NGTNCAAGTTNATNTNNNGNNCANNTCTTNGNGCNN-GTANTA----------------- 312 * **** * * ** * ** * * consensus_13536#0 TATAGTAGCGTGCAGTCTCCCAACCTGAGCTTTTTGGGAACTCCAACTCTAAGCAGGCTC 472 consensus_13536#2 TATAGTAGCGTGCAGTCTCCCAACCTGAGCTTTTTGGGAACTCCAACTCTAAGCAGGCTC 380 consensus_13536#1 TATAGTAGCGTGCAGTCTCCCAACCTGAGCTTTTTGGGAACTCCAACTCTAAGCAGGCTC 354 consensus_13536#3 ------------------------------------------------------------ consensus_13536#0 TCCAACTCATTCCTCACCAACTCTTTTCGTGGCAAAACCCCTGAAATTCTCTCTAATCTT 532 consensus_13536#2 TCCAACTCATTCCTCACCAACTCTTTTCGTGGCAAAACCCCTGAAATTCTCTCTAATCTT 440 consensus_13536#1 TCCAACTCATTCCTCACCAACTCTTTTCGTGGCAAAACCCCTGAAATTCTCTCTAATCTT 414 consensus_13536#3 ------------------------------------------------------------ consensus_13536#0 GTCAAGCCACTTCTACGCCCATCATCTTCAAGCGACGACCAGCAGCAGCAGCAGCAGCAT 592 consensus_13536#2 GTCAAGCCACTTCTACGCCCATCATCTTCAAGCGACGACCAGCAGCAGCAGCAGCAGCAT 500 consensus_13536#1 GTCAAGCCACTTCTACGCCCATCATTTTCAAGCGACGACCAGCAGCAGCAGCAGCAGCAT 474 consensus_13536#3 ------------------------------------------------------------ consensus_13536#0 GACGATGATACCCGTAAGAGTTCCCAGTACCTGCTTCCCTCAAGAAAACCGTCTTTGCAA 652 consensus_13536#2 GACGATGATACCCGTAAGAGTTCCCAGTACCTGCTTCCCTCAAGAAAACCGTCTTTGCAA 560 consensus_13536#1 GACGATGATACCCGTAAGAGTTCCCAGTACCTGCTTCCCTCAAGAAAACCGTCTTTGCAA 534 consensus_13536#3 ------------------------------------------------------------ consensus_13536#0 CAGATCCCGGAGGATCAAAAACCATTGGTGCCGGCTCATGAGGTGCCGGCTTATCAACAA 712 consensus_13536#2 CAGATCCCGGAGGATCAAAAACCATTGGTGCCGGCTCATGAGGTGCCGGCTTATCAACAA 620 consensus_13536#1 CAGATCCCGGAGGATCAAAAACCATTGGTGCCGGCTCATGAGGTGCCGGCTTATCAACAA 594 consensus_13536#3 ------------------------------------------------------------ consensus_13536#0 TGCTCCTACACCCAGGCAGTGATGAATGGAATAAATGTTCTGTGTGGTGTGGGGATCCTA 772 consensus_13536#2 TGCTCCTACACCCAGGCAGTGATGAATGGAATAAATGTTCTGTGTGGTGTGGGGATCCTA 680 consensus_13536#1 TGCTCCTACACCCAGGCAGTGATGAATGGAATAAATGTTCTGTGTGGTGTGGGGATCCTA 654 consensus_13536#3 ------------------------------------------------------------ consensus_13536#0 TCGACTCCATATGCCATTAAACAGGGAGGCTGGCTTGGACTGGTGATACT-----TTGCT 827 consensus_13536#2 TCGACTCCATATGCCATTAAACAGGGAGGCTGGCTTGGACTGGTGATACT-----TTGCT 735 consensus_13536#1 TCGACTCCTCAT--TGCTCTATCTGTCCCCTTCTTTGGGCTAGTTATGGCGTTGGTTGGT 712 consensus_13536#3 ------------------------------------------------------------ consensus_13536#0 TATTTGCTGTGCTCGCTTGGTACACCGGAGTGCTCCTTCGAC-GTTGTCTGGACAGCAAG 886 consensus_13536#2 TATTTGCTGTGCTCGCTTGGTACACCGGAGTGCTCCTTCGAC-GTTGTCTGGACAGCAAG 794 consensus_13536#1 TCTTTACTCACCATGCTTGTGACCTACATCCTTCCATGCGCCTGTTTCTTGGCCATCCTT 772 consensus_13536#3 ------------------------------------------------------------ consensus_13536#0 GAGGGTCTTGAGACATACCCTGATATTGGTCATGCCGCCTTTGGCACCACTGGACG---- 942 consensus_13536#2 GAGGGTCTTGAGACATACCCTGATATTGGTCATGCCGCCTTTGGCACCACTGGACG---- 850 consensus_13536#1 AAGAGAAAAGTGACTTGGCATCAGATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTT 832 consensus_13536#3 ------------------------------------------------------------ consensus_13536#0 TATAGCAATCTCG-ATAATCCTGTACATCGAACTGTATGCCTGTTGCATTGAGTATTTGA 1001 consensus_13536#2 TATAGCAATCTCG-ATAA------------------------------------------ 867 consensus_13536#1 TGCTGCGCTTGCGTGGGGACATACTCATCCCTCTCCAAGATTATCCAGAACTACACCTGA 892 consensus_13536#3 ------------------------------------------------------------ consensus_13536#0 TATTGGAGAGCGACAATTTGTCAAAGTTATTCCCCAATGCACATCTAACCATTGGGAGCA 1061 consensus_13536#2 ------------------------------------------------------------ consensus_13536#1 CCT----GAGTGGCCAGCTGAGGAACGGAGCACTAGCTGCTTATGTAGTAATAAGAAAAT 948 consensus_13536#3 ------------------------------------------------------------ consensus_13536#0 TGACACTAAACTCTCATGTGTTCTTCGCAATCTTGACCACCCTCATAGTCATGCCAACCA 1121 consensus_13536#2 ------------------------------------------------------------ consensus_13536#1 AATTAATCATCCTTCTATAGCCCTGCACATACCGGAACAAAGTTTTGCCCGGGAACTGGA 1008 consensus_13536#3 ------------------------------------------------------------ consensus_13536#0 CTTGGCTCCGCGACCTTAGCTGTCTGAGTTATCTTTCAGCTGGGGGTGTCATTGCATCAA 1181 consensus_13536#2 ------------------------------------------------------------ consensus_13536#1 GTCGACTTGATCAA-TTATATATGTATAATATAATTAGTTTGGA---------------- 1051 consensus_13536#3 ------------------------------------------------------------ consensus_13536#0 TCCTTGTAGTTGTCTGCCTATGCTGGGTTGGGGTTGTTGACCATGTTGGTTTTGAGAACA 1241 consensus_13536#2 ------------------------------------------------------------ consensus_13536#1 ------------------------------------------------------------ consensus_13536#3 ------------------------------------------------------------ consensus_13536#0 AAGGGACTGCACTGAATCTCCCAGGAATTCCCATCGCAATTGGACTGTATGGTTATTGCT 1301 consensus_13536#2 ------------------------------------------------------------ consensus_13536#1 ------------------------------------------------------------ consensus_13536#3 ------------------------------------------------------------ consensus_13536#0 ACTCAGGACATGGTGTGTTCCCGAACATCTATTCTTCTCTGAAGAATCGCAACCAGTTTC 1361 consensus_13536#2 ------------------------------------------------------------ consensus_13536#1 ------------------------------------------------------------ consensus_13536#3 ------------------------------------------------------------ consensus_13536#0 CTTCTATTCTTTTCACTTGTATTGGGTTGTCCTCAATTTTGTTTGCCGGTGCTGCTGTGA 1421 consensus_13536#2 ------------------------------------------------------------ consensus_13536#1 ------------------------------------------------------------ consensus_13536#3 ------------------------------------------------------------ consensus_13536#0 TGGGATATAAGATGTTTGGTGAGTCCACTGAATCTCAGTTCACGCTGAACTTACCAGAGA 1481 consensus_13536#2 ------------------------------------------------------------ consensus_13536#1 ------------------------------------------------------------ consensus_13536#3 ------------------------------------------------------------ consensus_13536#0 ATTTGGTGGTTTCAAAGGTTGCTGTCTGGACCACGGTGGCAAATCCAATAACCAAATATG 1541 consensus_13536#2 ------------------------------------------------------------ consensus_13536#1 ------------------------------------------------------------ consensus_13536#3 ------------------------------------------------------------ consensus_13536#0 CATTGACCATAACCCCATTGGCTATGAGTTTGGAAGAATTGCTGCCTCCAAATCAGCAGA 1601 consensus_13536#2 ------------------------------------------------------------ consensus_13536#1 ------------------------------------------------------------ consensus_13536#3 ------------------------------------------------------------ consensus_13536#0 AGTATGCGAACATAATCATGCTTAGATCCTCCCTGGTGGTCTCAACCCTCCTCATTGCTC 1661 consensus_13536#2 ------------------------------------------------------------ consensus_13536#1 ------------------------------------------------------------ consensus_13536#3 ------------------------------------------------------------ consensus_13536#0 TATCTGTCCCCTTCTTTGGGCTAGTTATGGCGTTGGTTGGTTCTTTACTCACCATGCTTG 1721 consensus_13536#2 ------------------------------------------------------------ consensus_13536#1 ------------------------------------------------------------ consensus_13536#3 ------------------------------------------------------------ consensus_13536#0 TGACCTACATCCTTCCATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGC 1781 consensus_13536#2 ------------------------------------------------------------ consensus_13536#1 ------------------------------------------------------------ consensus_13536#3 ------------------------------------------------------------ consensus_13536#0 ATCAGATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTGGGGA 1841 consensus_13536#2 ------------------------------------------------------------ consensus_13536#1 ------------------------------------------------------------ consensus_13536#3 ------------------------------------------------------------ consensus_13536#0 CATACTCATCCCTCTCCAAGATTATCCAGAACTACACCTGACCTGAGTGGCCAGCTGAGG 1901 consensus_13536#2 ------------------------------------------------------------ consensus_13536#1 ------------------------------------------------------------ consensus_13536#3 ------------------------------------------------------------ consensus_13536#0 AACGGAGCACTAGCTGCTTATGTAGTAATAAGAAAATAATTAATCATCCTTCTATAGCCC 1961 consensus_13536#2 ------------------------------------------------------------ consensus_13536#1 ------------------------------------------------------------ consensus_13536#3 ------------------------------------------------------------ consensus_13536#0 TGCACATACCGGAACAAAGTTTTGCCCGGGAACTGGAGTCGACTTGATCAATTATATATG 2021 consensus_13536#2 ------------------------------------------------------------ consensus_13536#1 ------------------------------------------------------------ consensus_13536#3 ------------------------------------------------------------ consensus_13536#0 TATAATATAATTAGTTTGGATCGTTTGTTTAATTTGTGGCAACTCCAGGCATGTTAATGT 2081 consensus_13536#2 ------------------------------------------------------------ consensus_13536#1 ------------------------------------------------------------ consensus_13536#3 ------------------------------------------------------------ consensus_13536#0 ATAATTAACGATAAAAACACCACAGTACCACATAGTGGAGTTTTGTTAATGATAAAAATA 2141 consensus_13536#2 ------------------------------------------------------------ consensus_13536#1 ------------------------------------------------------------ consensus_13536#3 ------------------------------------------------------------ consensus_13536#0 AAATAATGCTATACATAAAAAATGATCGATATTACAGACCAATATAAAAAAA 2193 consensus_13536#2 ---------------------------------------------------- consensus_13536#1 ---------------------------------------------------- consensus_13536#3 ---------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||