Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 13537 cluster # 13537       Sequences # 13       consensus # 6


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13537#0 length = 542 sequences # 1  
consensus_13537#1 length = 540 sequences # 8  
consensus_13537#2 length = 477 sequences # 1  
consensus_13537#3 length = 436 sequences # 1  
consensus_13537#4 length = 384 sequences # 1  
consensus_13537#5 length = 224 sequences # 1  

consensusID : consensus_13537#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 542
fasta sequence
                              [CCGTTGACGATGACACCGCCGGTGCTTCGCCATAGTGGAGGCCCCGCCATGGGCGTTGGCTGGTTCCTATGGGCCGGTGATCGTGGCTCTGGCGATCATCGCTACCCTCACCGGTTGCTTCTGTTGCCGTTGGTCAGCTTTGCGTGGGACCGTGGCACACCCATCACAGCCTGGGCACAGGTATGGGAGCCTTTGTGAAGAAGAGCATAGGAGGGAACCAAGCTGCCTATGATGATGCCCTCCCTGAGAAGAAGAAGGAAGAAGACGTGGAGAACGCCACCTGTGGAGGAGGTGGAGAAATCGGAGCCACCCAAGGTGGAAGAGGACCGATGACGGGAGTTCTTCTCAAGTGAGCTCCTAGTATGGGAATCGATCTGTTTTTTTTTGTTGTTGCTTTTGTGGAGGGGTTTCCAGACTCTTTCTGTGTGTTCCTTTGATTCCATGGTGTAATTGATATCTTGGGAGGGATTCAATGGAATTGAAGAATAATAAATGAAAAAAAAAAAAAAAAAAAAAAAAACTTGGATCCAGCTACGTACGCG]

[+] EMBL BI799507             [CCGTTGACGATGACACCGCCGGTGCTTCGCCATAGTGGAGGCCCCGCCATGGGCGTTGGCTGGTTCCTATGGGCCGGTGATCGTGGCTCTGGCGATCATCGCTACCCTCACCGGTTGCTTCTGTTGCCGTTGGTCAGCTTTGCGTGGGACCGTGGCACACCCATCACAGCCTGGGCACAGGTATGGGAGCCTTTGTGAAGAAGAGCATAGGAGGGAACCAAGCTGCCTATGATGATGCCCTCCCTGAGAAGAAGAAGGAAGAAGACGTGGAGAACGCCACCTGTGGAGGAGGTGGAGAAATCGGAGCCACCCAAGGTGGAAGAGGACCGATGACGGGAGTTCTTCTCAAGTGAGCTCCTAGTATGGGAATCGATCTGTTTTTTTTTGTTGTTGCTTTTGTGGAGGGGTTTCCAGACTCTTTCTGTGTGTTCCTTTGATTCCATGGTGTAATTGATATCTTGGGAGGGATTCAATGGAATTGAAGAATAATAAATGAAAAAAAAAAAAAAAAAAAAAAAAACTTGGATCCAGCTACGTACGCG]


>consensus_13537#0 CCGTTGACGATGACACCGCCGGTGCTTCGCCATAGTGGAGGCCCCGCCATGGGCGTTGGC TGGTTCCTATGGGCCGGTGATCGTGGCTCTGGCGATCATCGCTACCCTCACCGGTTGCTT CTGTTGCCGTTGGTCAGCTTTGCGTGGGACCGTGGCACACCCATCACAGCCTGGGCACAG GTATGGGAGCCTTTGTGAAGAAGAGCATAGGAGGGAACCAAGCTGCCTATGATGATGCCC TCCCTGAGAAGAAGAAGGAAGAAGACGTGGAGAACGCCACCTGTGGAGGAGGTGGAGAAA TCGGAGCCACCCAAGGTGGAAGAGGACCGATGACGGGAGTTCTTCTCAAGTGAGCTCCTA GTATGGGAATCGATCTGTTTTTTTTTGTTGTTGCTTTTGTGGAGGGGTTTCCAGACTCTT TCTGTGTGTTCCTTTGATTCCATGGTGTAATTGATATCTTGGGAGGGATTCAATGGAATT GAAGAATAATAAATGAAAAAAAAAAAAAAAAAAAAAAAAACTTGGATCCAGCTACGTACG CG



consensusID : consensus_13537#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 540
fasta sequence
                              [CGTGTCACCTCCACCAC-CGGTTGACGAT--GTACAGCGG-TGCGTC-GCATAGTGGAGGCACCGCCATGGG-CGTTGG-TGGTTCCTAT-GGGCCGGTGATC-GTGGCTCT-GGCGATCATCGCTACCCT-CACGGTTGCTTCTGTTGCC-G-TTGGTCAGCTTTGCGTGGGAC-GTGGCACACCCATCAAGCCTGGGCAAGGTAT-GGGAGCCTTTGTGAAGAAGAGCATAGGAGGGAAC-AAA-GCTGCCTATGATGATGCCCTCCCTGAGAAGAAGAAGGAAGAAGACGTGGAGAACGCC-ACTGTGGAGGAGGTGGAGAAATCGGAGCCA-CCAAAGGTGGAAGAGGACGATGACGGGAGTTCTTCTCAAGTGAGCTC-CTAGTATGGGAATCGATC-TG-TTTTTTTTTGTTGTTGCTTTTGTGGAGGGGTTTC-CAAGACTCTTTCTGTGTGTTCCTTTGATT-CCA-TGGTGTAATT-GATATCTTGGGAGGGATTCAATGGAATTGAAGAATAATAAATGATATATTTT-GTCTGGTTAAAAAAAGCTAAAAAAAAAA]

[+] EMBL BI801716             [CGTGTCACCTCCACCAC CGGTTGACGAT  GTACACCGG TGCGTC GCATAGTGGAGGCACCGCCATGGG CGTTGT TGGTTCCTAT GGGCCGGTGATCTGTGGCTCT GGCGATCATCGCTACCCT CACGGTTGCTTCTGTTGCC GCTTGGTCAGCTTTGCGTGGGAC GTGGCACACCCATCAAGCCTGGGCAAGGTATCGGGAGCCTTTGTGAAGAAGAGCATAGGAGGGAAC AAA GCTGCCTATGATGATGCCCTCCCTGAGAAGAAGAAGGAAGAAGACGTGGAGAACGCC ACTGTGGAGGAGGTGGAGAAATCGGAGCCA CCAAAGGTGGAAGAGGACGATGACGGGAGTTCTTCTCAAGTGAGCTC CTAGTATGGGAATCGATC TGTTTTTTTTTTGTTGTTGCTTTTGTGGAGGGGTTTC CAAGACTCTTTCTGTGTGTTCCTTTGATT CCA TGGTGTAATT GATATCTTGGGAGGGATTCAATGGAATTGAAGAATAATAAATGATATATTTT GTCTaaaaa                   ]
[+] EMBL BI802094             [        CTCCACCACACCGTTGACGATTGGCACAGCGGTTGCGTCGGCATAGTGGAGGCACCGCCATGGGTCGTTGGTTGGTTCCTAT GGGCCGGTGATC GTGGCTCT GGCGATCATCGCTACCCT CACGGTTGCTTCTGTTGCCAG TTGGTCAGCTTTGCGTGGGACAGTGGCACACCCATCAAGCCTGGGCAAGGTAT GGGACACTTTGTGAAGAAGAGCATAGGAGGGAACAAAA GCTGCCTATGATGATGCCCTCCCTGAGAAGAAGAAGGAAGAAGACGTGGAGAACGCC ACTGTGGAGGAGGTGGAGAAATCGGAGCCA CCAAAGGTGGAAGAGGACGATGACGGGAGTTCTTCTCAAGTGAGCTC CTAGTATGGGAATCGATC TG TTTTTTTTTGTTGTTGCTTTTGTGGAGGGGTTTC CAAGACTCTTTCTGTGTGTTCCTTTGATT CCA TGGTGTAATT GATATCTTGGGAGGGATTCAATGGAATTGAAGAATAATAAATGATATATTTT GTCTGGTTAAAAAAA             ]
[+] EMBL BI802177             [                                    GCGG TGCGTC GCATAGTGGAGGCACCGCCATGGG CGTTGG TGGTTCCTAT GGGCCGGTGATC GTGGCTCT GGCGATCATCGCTACCCTGCACGGTTGCTTCTGTTGCC G TTGGTCAGCTTTGCGTGGGAC GTGGCACACCCATCAAGCCTGGGCAAGGTAT GGGAGCCTTTGTGAAGAAGAGCATAGGAGGGAAC AAATGCTGCCTATGATGATGCCCTCCCTGAGAAGAAGAAGGAAGAAGACGTGGAGAACGCC ACTGTGGAGGAGGTGGAGAAATCGGAGCCA CC AAGGTGGAAGAGGACGATGACGGGAGTTCTTCTCAAGTGAGCTC CTAGTATGGGAATCGATC TG TTTTTTTTTGTTGTTGCTTTTGTGGAGGGGTTTC CAAGACTCTTTCTGTGTGTTCCTTTGATT CCA TGGTGTAATT GATATCTTGGGAGGGATTCAATGGAATTGAAGAATAATAAATGATATATTTTCGTCTGGTTTGTTGTTGCTAAAAAAAAAA]
[+] EMBL AA750158             [                                         TGCGTC GCATAGTGGAGGCACCGCCATGGG  NTTGG TGGTTCCTAT GGGCCGGTGATC GTGGCTCT GGCGATCATCGCTACCCT CACGGTTGCTTCTGTTGCC G TTGGTCAGCTTTGCGTGGGAC GTGGCACACCCATCAAGCCTGGGCAAGGTAT GGGAGCCTTTGTGAAGAAGAGCATAGGAGGGAAC AAA GCTGC                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL BI804655             [                                                                    TGGG CGTTGG TGGTTCCTATGGGGCCGGTGATC GTGGCTCTGGGCGATCATCGCTACCCT CACGGTTGCTTCTGTTGCC G TTGGTCAGCTTTGCGTGGGAC GTGGCACACCCATCAAGCCTGGGCAAGGTAT GGGAGCCTTTGTGAAGAAGAGCATAGGAGGGAAC AAA GCTGCCTATGATGATGCCCTCCCTGAGAAGAAGAAGGAAGAAGACGTGGAGAACGCC  CTGTGGAGGAGGTGGAGAAATCGGAGCCA CC AAGGTGGAAGAGGACGATGACGGGAGTTCTTCTCAAGTGAGCTC CTAGTATGGGAATCGATC TG TTTTTTTTTGTTGTTGCTTTTGTGGAGGGGTTTC CAAGACTCTTTCTGTGTGTTCCTTTGATT CCA TGGTGTAATT GATATCTTGGGAGGGATTCAATGGAATTGAAGAATAATAAAaaaaa                                   ]
[+] EMBL AA750256             [                                                                                                                                                                                                                                                                     TGCCCTCCCTGAGAAGAAGAAGGAAGAAGACGTGGAGAACGCC ACTGTGGAGGAGGTGGAGAAATCGGAGCCA CCAAAGGT GAAGAGGACGATGACGGGAGTTCTTCTCAAGTGAGCTC CTAGTATGGGAATCGATC TG TTTTTTTTTGTTGTTGCT                                                                                                                                               ]
[+] EMBL BI802722             [                                                                                                                                                                                                                                                                                                          AACGCCAACTGTGGAGGAGGTGGAGAAATCGGAGCCACCCAAAGGTGGAAGAGGACGATGACGGGAGTTCTTCTCAAGTGAGCTCACTAGTATGGGAATCGATCATG TTTTTTTTTGTTGTTGCTTTTGTGGAGGGGTTTCACAAGACTCTTTCTG GTGTTCCTTTGATTCCCA TGGTGTAATTGGATATCTTGGGAGGGATTCAATGGAATTGAAGAATAAT AATGATATATTTT GTCa                        ]
[+] EMBL BI803934             [                                                                                                                                                                                                                                                                                                                                                                                                                             tcGTTGTTGCTTTTGTGGAGGGGTTTC CAAGACTCTTTCTGTGTGTTCCTTTGATT CCACTGGTGTAATT GATATCTTGGGAGGGATTCAATGGAATTGAAGAATAATAAATGATATATTTT GTCTGGTTAAAAAAAaaa          ]


>consensus_13537#1 CGTGTCACCTCCACCACCGGTTGACGATGTACAGCGGTGCGTCGCATAGTGGAGGCACCG CCATGGGCGTTGGTGGTTCCTATGGGCCGGTGATCGTGGCTCTGGCGATCATCGCTACCC TCACGGTTGCTTCTGTTGCCGTTGGTCAGCTTTGCGTGGGACGTGGCACACCCATCAAGC CTGGGCAAGGTATGGGAGCCTTTGTGAAGAAGAGCATAGGAGGGAACAAAGCTGCCTATG ATGATGCCCTCCCTGAGAAGAAGAAGGAAGAAGACGTGGAGAACGCCACTGTGGAGGAGG TGGAGAAATCGGAGCCACCAAAGGTGGAAGAGGACGATGACGGGAGTTCTTCTCAAGTGA GCTCCTAGTATGGGAATCGATCTGTTTTTTTTTGTTGTTGCTTTTGTGGAGGGGTTTCCA AGACTCTTTCTGTGTGTTCCTTTGATTCCATGGTGTAATTGATATCTTGGGAGGGATTCA ATGGAATTGAAGAATAATAAATGATATATTTTGTCTGGTTAAAAAAAGCTAAAAAAAAAA



consensusID : consensus_13537#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 477
fasta sequence
                              [TCACCCCACCACCGTGACGATGACACCGGTGCGTCGCATATGGAGGCACCCCCATGGCGTTGGTGGTTCCTATGGCCCGGTGATCGTGCTCTGCGATCATCGCTACCTCACGTTGCTTCTGTTCCGTTGGTCAGCTTTGCGTGGGACGTGGCACACCCATCAAGCCTGGCAAGGTATGGGACCTTTGTGAAGAAGAGCATAGGAGGGAACAAGCTGCCTATGATGATGCCCTCCCCTGAGAAGAAGAAGGAAGAAGACGTGGAGAACGCCACTGTGGAGGAGGTGGAGAAATCGGACCACCAAGGTGGAAGACCCATGACGGGAGTTCTTCTCAAGTGAGCTCTAGTATGGGAATCGATCTTTTTTTTTTTTTGCTTTTTGGAGGGTTTCCAAGACTCTTTCTGTGTGTTCCTTGATTCCATGGCGTAATTGATATCTTGGGAGCCCCCCTGGAATCCAAGAATAATAAATGAAAAA]

[+] EMBL BI803010             [TCACCCCACCACCGTGACGATGACACCGGTGCGTCGCATATGGAGGCACCCCCATGGCGTTGGTGGTTCCTATGGCCCGGTGATCGTGCTCTGCGATCATCGCTACCTCACGTTGCTTCTGTTCCGTTGGTCAGCTTTGCGTGGGACGTGGCACACCCATCAAGCCTGGCAAGGTATGGGACCTTTGTGAAGAAGAGCATAGGAGGGAACAAGCTGCCTATGATGATGCCCTCCCCTGAGAAGAAGAAGGAAGAAGACGTGGAGAACGCCACTGTGGAGGAGGTGGAGAAATCGGACCACCAAGGTGGAAGACCCATGACGGGAGTTCTTCTCAAGTGAGCTCTAGTATGGGAATCGATCTTTTTTTTTTTTTGCTTTTTGGAGGGTTTCCAAGACTCTTTCTGTGTGTTCCTTGATTCCATGGCGTAATTGATATCTTGGGAGCCCCCCTGGAATCCAAGAATAATAAATGAAAAA]


>consensus_13537#2 TCACCCCACCACCGTGACGATGACACCGGTGCGTCGCATATGGAGGCACCCCCATGGCGT TGGTGGTTCCTATGGCCCGGTGATCGTGCTCTGCGATCATCGCTACCTCACGTTGCTTCT GTTCCGTTGGTCAGCTTTGCGTGGGACGTGGCACACCCATCAAGCCTGGCAAGGTATGGG ACCTTTGTGAAGAAGAGCATAGGAGGGAACAAGCTGCCTATGATGATGCCCTCCCCTGAG AAGAAGAAGGAAGAAGACGTGGAGAACGCCACTGTGGAGGAGGTGGAGAAATCGGACCAC CAAGGTGGAAGACCCATGACGGGAGTTCTTCTCAAGTGAGCTCTAGTATGGGAATCGATC TTTTTTTTTTTTTGCTTTTTGGAGGGTTTCCAAGACTCTTTCTGTGTGTTCCTTGATTCC ATGGCGTAATTGATATCTTGGGAGCCCCCCTGGAATCCAAGAATAATAAATGAAAAA



consensusID : consensus_13537#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 436
fasta sequence
                              [GTTGGTTTCATATGGCCCGGTGATCGTGGCTCTGGCCGATCATCGCGTAACCACTCACGTTGCTTTCTGTTCCCGTTGGTTCAGCTTTTGCGTGGGACGTGCAACACCCATCAACCGGGCAAGGTATGGGACCTTTGGTGAAAGAAGACATAGGAGGGAACAAACGTGCCGAGGATGGATGCCCACTCCCTGAGAAGAAGAAGGAAGAAGACGTGGAGAACGCCCTGTGGAGGAGGTGGAGAAATCGGACCACCCAAAGGTGGAAGAGACGATGACGGGAGTTCGTGCTCAAGTGAGCTCTAGTATGGGAATCGATCTTTTTTTTTTTTCTTTTGTGGAGGGTTTCCAAGACTAAAAAATTGTTCCTTTGATTCCATGGTGTAATTGATATCTTGGGAGGGATTCAATGGAATTGAAGAATAATAAAGTGATAAAA]

[+] EMBL BI796216             [GTTGGTTTCATATGGCCCGGTGATCGTGGCTCTGGCCGATCATCGCGTAACCACTCACGTTGCTTTCTGTTCCCGTTGGTTCAGCTTTTGCGTGGGACGTGCAACACCCATCAACCGGGCAAGGTATGGGACCTTTGGTGAAAGAAGACATAGGAGGGAACAAACGTGCCGAGGATGGATGCCCACTCCCTGAGAAGAAGAAGGAAGAAGACGTGGAGAACGCCCTGTGGAGGAGGTGGAGAAATCGGACCACCCAAAGGTGGAAGAGACGATGACGGGAGTTCGTGCTCAAGTGAGCTCTAGTATGGGAATCGATCTTTTTTTTTTTTCTTTTGTGGAGGGTTTCCAAGACTAAAAAATTGTTCCTTTGATTCCATGGTGTAATTGATATCTTGGGAGGGATTCAATGGAATTGAAGAATAATAAAGTGATAAAA]


>consensus_13537#3 GTTGGTTTCATATGGCCCGGTGATCGTGGCTCTGGCCGATCATCGCGTAACCACTCACGT TGCTTTCTGTTCCCGTTGGTTCAGCTTTTGCGTGGGACGTGCAACACCCATCAACCGGGC AAGGTATGGGACCTTTGGTGAAAGAAGACATAGGAGGGAACAAACGTGCCGAGGATGGAT GCCCACTCCCTGAGAAGAAGAAGGAAGAAGACGTGGAGAACGCCCTGTGGAGGAGGTGGA GAAATCGGACCACCCAAAGGTGGAAGAGACGATGACGGGAGTTCGTGCTCAAGTGAGCTC TAGTATGGGAATCGATCTTTTTTTTTTTTCTTTTGTGGAGGGTTTCCAAGACTAAAAAAT TGTTCCTTTGATTCCATGGTGTAATTGATATCTTGGGAGGGATTCAATGGAATTGAAGAA TAATAAAGTGATAAAA



consensusID : consensus_13537#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 384
fasta sequence
                              [TTTGCAGTGGGACTGGCACACCCATCAAGCCTGGGCAAGTATGGGAGCCTTTGTGAAGAAGAGCATTAGGAGGGAACAAAGACTGCCTATGATGATGCCCTCCCCTGAGAAGAAGAAGGAAGAAGACGTGGAGAACGCACACTGTGGAGGAGGTGGAGAAATTCGGACCACCAAAGTGAAGAGGACGATGACGGGAGTTCTTCTCAAGTGAGCTCCTAGTATGGGAATCGATCTGTTTTTTTTTTTTTGCTTTTGTGGAGGGTTTCCAAGACTCTTTGCTGGGTGTTCCTTTGATTCCATGGGTGTAATGGATATCTTGGGAGGAATTCAATGGAATTGAAGAATAATAAAATGGATATATTTTTTCTGTTTGTGTTGCTAAAA]

[+] EMBL BI802783             [TTTGCAGTGGGACTGGCACACCCATCAAGCCTGGGCAAGTATGGGAGCCTTTGTGAAGAAGAGCATTAGGAGGGAACAAAGACTGCCTATGATGATGCCCTCCCCTGAGAAGAAGAAGGAAGAAGACGTGGAGAACGCACACTGTGGAGGAGGTGGAGAAATTCGGACCACCAAAGTGAAGAGGACGATGACGGGAGTTCTTCTCAAGTGAGCTCCTAGTATGGGAATCGATCTGTTTTTTTTTTTTTGCTTTTGTGGAGGGTTTCCAAGACTCTTTGCTGGGTGTTCCTTTGATTCCATGGGTGTAATGGATATCTTGGGAGGAATTCAATGGAATTGAAGAATAATAAAATGGATATATTTTTTCTGTTTGTGTTGCTAAAA]


>consensus_13537#4 TTTGCAGTGGGACTGGCACACCCATCAAGCCTGGGCAAGTATGGGAGCCTTTGTGAAGAA GAGCATTAGGAGGGAACAAAGACTGCCTATGATGATGCCCTCCCCTGAGAAGAAGAAGGA AGAAGACGTGGAGAACGCACACTGTGGAGGAGGTGGAGAAATTCGGACCACCAAAGTGAA GAGGACGATGACGGGAGTTCTTCTCAAGTGAGCTCCTAGTATGGGAATCGATCTGTTTTT TTTTTTTTGCTTTTGTGGAGGGTTTCCAAGACTCTTTGCTGGGTGTTCCTTTGATTCCAT GGGTGTAATGGATATCTTGGGAGGAATTCAATGGAATTGAAGAATAATAAAATGGATATA TTTTTTCTGTTTGTGTTGCTAAAA



consensusID : consensus_13537#5
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 224
fasta sequence
                              [CGCATAACAACACCAGTCCATCATTAGATGTGCAAGTATTCCCCTTGTTAGCTTGCAGGGGGATAGGTAGGAAGATATAGATGTCCTCTTGTCACCTCACCACCGTTGACGATGACACGCGGTGCGTCGCATAGTGGAGGCACCGCATGGGCGTTGGTGGTTCCTATGGGCGGTGATCGTGGCTCTGGCGATCATCGCTACCTCACGTTGCTTTGTGCGTTGGT]

[+] EMBL AA750684             [CGCATAACAACACCAGTCCATCATTAGATGTGCAAGTATTCCCCTTGTTAGCTTGCAGGGGGATAGGTAGGAAGATATAGATGTCCTCTTGTCACCTCACCACCGTTGACGATGACACGCGGTGCGTCGCATAGTGGAGGCACCGCATGGGCGTTGGTGGTTCCTATGGGCGGTGATCGTGGCTCTGGCGATCATCGCTACCTCACGTTGCTTTGTGCGTTGGT]


>consensus_13537#5 CGCATAACAACACCAGTCCATCATTAGATGTGCAAGTATTCCCCTTGTTAGCTTGCAGGG GGATAGGTAGGAAGATATAGATGTCCTCTTGTCACCTCACCACCGTTGACGATGACACGC GGTGCGTCGCATAGTGGAGGCACCGCATGGGCGTTGGTGGTTCCTATGGGCGGTGATCGT GGCTCTGGCGATCATCGCTACCTCACGTTGCTTTGTGCGTTGGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13537#3      ------------------------------------------------------------
consensus_13537#4      ------------------------------------------------------------
consensus_13537#0      --------------CCGTTGACGATGACACCGCCGGTGCTTCGCCATAGTGGAGGCCCCG 46
consensus_13537#2      ----------TCACCCCACCACCGTGACGATGACACCGGTGCGTCGCATATGGAGGCACC 50
consensus_13537#1      CGTGTCACCTCCACCACCGGTTGACGATGTACAGCGGTGCGTCGCATAGTGGAGGCACCG 60
consensus_13537#5      ------------------------------------------------------------
                                                                                   

consensus_13537#3      -----------GTTGGTTTCATATGGCCCGGTGATCGTGGCTCTGGCCGATCATCGCGTA 49
consensus_13537#4      ------------------------------------------------------------
consensus_13537#0      CCATGGGCGTTGGCTGGTTCCTATGGGCCGGTGATCGTGGCTCTGGC-GATCATCGCT-- 103
consensus_13537#2      CCCATGGCGTTGGTGG-TTCCTATGGCCCGGTGATCGTG---CTCTGCGATCATCGCT-- 104
consensus_13537#1      CCATGGGCGTTGGTGG-TTCCTATGGGCCGGTGATCGTGGCTCTGGC-GATCATCGCTA- 117
consensus_13537#5      ------------------------------------------------------------
                                                                                   

consensus_13537#3      ACCACTCACGTTGCTTTCTGTTCCCGTTGGTTCAGCTTTTGC-GTGGGAC--GTGCAACA 106
consensus_13537#4      -------------------------------------TTTGCAGTGGGAC--TGGCA-CA 20
consensus_13537#0      ACCCTCACCGGTTGCTTCTGTTGCCGTTGGTCAG--CTTTGC-GTGGGACCGTGGCA-CA 159
consensus_13537#2      --ACCTCACGTTGCTTCTG--TTCCGTTGGTCAG--CTTTGC-GTGGGAC-GTGGCA-CA 155
consensus_13537#1      --CCCTCACGGTTGCTTCTGTTGCCGTTGGTCAG--CTTTGC-GTGGGAC-GTGGCA-CA 170
consensus_13537#5      ------------------------------------------------------------
                                                                                   

consensus_13537#3      CCCATCA-A-CCGGGCAA--GGTATGGGACCTTTGGTGAAAGAAGACAT-AGGAGGGAAC 161
consensus_13537#4      CCCATCA-AGCCTGGGCA--AGTATGGGAGCCTTTGTGAAGAAGAGCATTAGGAGGGAAC 77
consensus_13537#0      CCCATCACAGCCTGGGCACAGGTATGGGAGCCTTTGTGAAGAAGAGCAT-AGGAGGGAAC 218
consensus_13537#2      CCCATCA-AGCCTGGCAA--GGTATGGGA-CCTTTGTGAAGAAGAGCAT-AGGAGGGAAC 210
consensus_13537#1      CCCATCA-AGCCTGGGCA-AGGTATGGGAGCCTTTGTGAAGAAGAGCAT-AGGAGGGAAC 227
consensus_13537#5      --------------------CGCATAACAACACCAGTCCAT-----CATTAGATGTG--C 33
                                            * **   * *    **  *      *** **  * *  *

consensus_13537#3      AAACG-TGCCGAGGATGGATGCCCACTCCCTGAGAAGAAGAAGGAAGAAGACGTGGAGAA 220
consensus_13537#4      AAAGACTGCCTATGATG-ATGCCCTC-CCCTGAGAAGAAGAAGGAAGAAGACGTGGAGAA 135
consensus_13537#0      CAAGC-TGCCTATGATG-ATGCCCTC--CCTGAGAAGAAGAAGGAAGAAGACGTGGAGAA 274
consensus_13537#2      AAGC--TGCCTATGATG-ATGCCCTC-CCCTGAGAAGAAGAAGGAAGAAGACGTGGAGAA 266
consensus_13537#1      AAAGC-TGCCTATGATG-ATGCCCTC--CCTGAGAAGAAGAAGGAAGAAGACGTGGAGAA 283
consensus_13537#5      AAGTATTCCCCTTGTTA---GCTTGCAGGGGGATAGGTAGGAAGATATAGATGTCCTCTT 90
                        *    * **   * *    **   *     ** * * ** * **   *** **      

consensus_13537#3      CGCC--CTGTGGAGGA-GGTGGAGAAAT-CGGACCACCCAAAGGTGGAAGAGAC-GATGA 275
consensus_13537#4      CGCACACTGTGGAGGA-GGTGGAGAAATTCGGACCACC--AAAGTGAAGAGGAC-GATGA 191
consensus_13537#0      CGCCACCTGTGGAGGA-GGTGGAGAAATCGGAGCCACCCAAGGTGGAAGAGGACCGATGA 333
consensus_13537#2      CGCC-ACTGTGGAGGA-GGTGGAGAAAT-CGGACCACC--AAGGTGGAAGACCC--ATGA 319
consensus_13537#1      CGCC-ACTGTGGAGGA-GGTGGAGAAATCGGAGCCACCAAAGGTGGAAGAGGAC-GATGA 340
consensus_13537#5      GTCACCTCACCACCGTTGACGATGACACGCGGTGCGTCGCATAGTGGAGGCACCGCATGG 150
                         *           *  *  *  ** *   *   *  *  *    * *     *  *** 

consensus_13537#3      CGGGAGTTCGTGCTCAAGTGAGCTC-TAGTATGGGAATCGATCT----TTTTTTTTT--T 328
consensus_13537#4      CGGGAGTTCTT-CTCAAGTGAGCTCCTAGTATGGGAATCGATCTGTTTTTTTTTTTT--T 248
consensus_13537#0      CGGGAGTTCTT-CTCAAGTGAGCTCCTAGTATGGGAATCGATCTGTTTTTTTTTGTTGTT 392
consensus_13537#2      CGGGAGTTCTT-CTCAAGTGAGCTC-TAGTATGGGAATCGATCT----TTTTTTTTTTTT 373
consensus_13537#1      CGGGAGTTCTT-CTCAAGTGAGCTCCTAGTATGGGAATCGATCTGTTTTTTTTTGTTGTT 399
consensus_13537#5      GCGTTGGTGGTTCCTATGGGCGGTGATCGTGGCTCTGGCGATCATCGCTACCTCACG--T 208
                         *  * *  * *  * * * * *  * **        *****     *   *      *

consensus_13537#3      TCTTTTGTGGAGGG-TTTCCAAGACT---AAAAAATTGTTCCTTTGATTCCATGG-TGTA 383
consensus_13537#4      GCTTTTGTGGAGGG-TTTCCAAGACTCTTTGCTGGGTGTTCCTTTGATTCCATGGGTGTA 307
consensus_13537#0      GCTTTTGTGGAGGG-GTTTCCAGACTCT-TTCTGTGTGTTCCTTTGATTCCATGG-TGTA 449
consensus_13537#2      GCTTTT-TGGAGGG-TTTCCAAGACTCT-TTCTGTGTGTTCCTT-GATTCCATGG-CGTA 428
consensus_13537#1      GCTTTTGTGGAGGGGTTTCCAAGACTCT-TTCTGTGTGTTCCTTTGATTCCATGG-TGTA 457
consensus_13537#5      TGCTTTGTGCGTTGGT-------------------------------------------- 224
                          *** **    *                                              

consensus_13537#3      ATTGATATCTTGGGAGGGATTCAATGGAATTGAAGAATAATAAAGTGATAAAA------- 436
consensus_13537#4      ATGGATATCTTGGGAGGAATTCAATGGAATTGAAGAATAATAAAATGGATATATTTTTTC 367
consensus_13537#0      ATTGATATCTTGGGAGGGATTCAATGGAATTGAAGAATAATAAATGAAAAAAAAAAAAAA 509
consensus_13537#2      ATTGATATCTTGGGAG--CCCCCCTGGAATCCAAGAATAATAAATGAAAAA--------- 477
consensus_13537#1      ATTGATATCTTGGGAGGGATTCAATGGAATTGAAGAATAATAAATGATATATTTTGTCTG 517
consensus_13537#5      ------------------------------------------------------------
                                                                                   

consensus_13537#3      ---------------------------------
consensus_13537#4      TGTTTGTGTTGCTAAAA---------------- 384
consensus_13537#0      AAAAAAAAAAACTTGGATCCAGCTACGTACGCG 542
consensus_13537#2      ---------------------------------
consensus_13537#1      GTTAAAAAAAGCTAAAAAAAAAA---------- 540
consensus_13537#5      ---------------------------------
                                                        




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)