cluster # 13540

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Oryza sativa
cluster # 13540 cluster # 13540 Sequences # 13 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_13540#0 length = 1682 sequences # 7
consensus_13540#1 length = 1540 sequences # 4

consensus_13540#2 length = 275 sequences # 1
consensus_13540#3 length = 224 sequences # 1

consensusID : consensus_13540#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1682
fasta sequence

                              [GAAAGCTTCCTCCTCCGCGCCGCCTCAAAAGCGCGGACCCGGCCGACCCCGCAAGAATACAGCCCTGTTTCCGGTTCCTGTGCTTGAGGCGAAGCCTGGGCGCGGGCGACCCCGGAAGAACCCTCTCCCTGTGGCTTCCTCCACCTCCTCTGCTGCTGCTGCTGCTACGGCGTTGAGCCTGAGAGTGAAGCGGGGACCTGGGAGGCCGCGCAAGAATGCTGCTGCTACCCCGTTGAGACTGGGAGCGAAGCGGGGACCTGGGAGACCGCGCAAGAATGCCACTGCTACGCCGTTGAGCCTGGGAGTTAAGCGGGGACCTGGGAGGCCGCGCAAGAATGCTGCTGCTGCTGCCTCTCCCGTTGCTCCGCCGCCTGCATCTCCACTGAAGCGGGGTGTTGGACGCCCAAGGAAGAACGCCACTCCTCTAGTCAAGCCTGGACCTGGGAGGCCGTCTGGATTCAAACGTGGACCAGGCCGCCCTCGCAAGAATGCCACTCCTCCTGTGCTGTCAGTGCCACCCACTGCTGCTGCTGTGTTGGGAGTGAAGCGTGGCCGTGGGCGCCCTAGAAAGGATAAACCATTGCAATCTTGGTCTGTGCTCTCTGGCGGTGCTGCAATGACTAAGAGAGGGCCTGGGAGGCCAAGAAAGAAGAGGCCACTGGAAGCTGGAGGTGTTGTGGCAGCACAGGTAGACACTGCAGATGGAGGTGAGGCTGGAGCCGTTCAAAATGGAGGTGAAGTTAGGTGTCTGCTCTCTGATGGTGCTTCTTCAATGGGGAACAGAGGGCCTGGGAGTCCTAGGAAGGAGGTGCTATTGGAAAATGAACCTACAGTTTCTACATTGGTGGGAAAGAGAGGCCGTGGCCGTCCAAAAAAGGAGAAACCAT-CAGCAGCAAGGCCTGCTGAAACTGGAGATGCTAAATCAATGGGGATCAAGAGAGGTCGCGGAAGACCAAGAAAGGACAGTTCCTTTCAAGCTGTGTTTGCAGAAGCTGCAGGT-CAGGTGTCAAGAGATGTCACAGCAGCTCAG-CCCGAAGGAGATGCAGATTTACTGGCAAGGAAGGAACCAGAGACTGCAGCTGTAGTTTCGGTGGAGAACAAAGAAACTAGGCCTGCAGATGCTGGGGGTG---TTGTGG-TTTCTGAAGAGAAGACATCGATTGAT-CCGGTGGAGGCTGGAAGTGTAATGCCATGTGTTAATGCAGAAGTTGATCGCATGAACTCTGACCTGCGCACTGCTAATCCATAGTGTGGCTGGCGTCAGCACTCAGCACAGAAGGGAGGACCTGGATGGCTGGCACTACCTGCAGGTGTGAATGTGTATTCACTGATTTAGCTGGAGACATACTGTGAAAACTGTTAAATGTTGCAACCAAAATTATTACTGTCATGCTGTTAAGTAGTTTCTCAAGATCAACATTGGAGTATGCTTTTAATGATATCCACTTCTCGGATAAATTTTTATAATAGTCCTTAGGTAGCACATATAGTTCCTTTAGGAATGACTGGATATATCATATATGTTGCTTTTAGTGCACCCAGTGGTGATGAGATGCATCAATGTTTACTTCCAATTTGAACATAAAAGAAAAAAACATTCAATCAATATCTCTGTTTTTTCCATGCCTATATCTTAAGTAATTTTGGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK064798             [GAAAGCTTCCTCCTCCGCGCCGCCTCAAAAGCGCGGACCCGGCCGACCCCGCAAGAATACAGCCCTGTTTCCGGTTCCTGTGCTTGAGGCGAAGCCTGGGCGCGGGCGACCCCGGAAGAACCCTCTCCCTGTGGCTTCCTCCACCTCCTCTGCTGCTGCTGCTGCTACGGCGTTGAGCCTGAGAGTGAAGCGGGGACCTGGGAGGCCGCGCAAGAATGCTGCTGCTACCCCGTTGAGACTGGGAGCGAAGCGGGGACCTGGGAGACCGCGCAAGAATGCCACTGCTACGCCGTTGAGCCTGGGAGTTAAGCGGGGACCTGGGAGGCCGCGCAAGAATGCTGCTGCTGCTGCCTCTCCCGTTGCTCCGCCGCCTGCATCTCCACTGAAGCGGGGTGTTGGACGCCCAAGGAAGAACGCCACTCCTCTAGTCAAGCCTGGACCTGGGAGGCCGTCTGGATTCAAACGTGGACCAGGCCGCCCTCGCAAGAATGCCACTCCTCCTGTGCTGTCAGTGCCACCCACTGCTGCTGCTGTGTTGGGAGTGAAGCGTGGCCGTGGGCGCCCTAGAAAGGATAAACCATTGCAATCTTGGTCTGTGCTCTCTGGCGGTGCTGCAATGACTAAGAGAGGGCCTGGGAGGCCAAGAAAGAAGAGGCCACTGGAAGCTGGAGGTGTTGTGGCAGCACAGGTAGACACTGCAGATGGAGGTGAGGCTGGAGCCGTTCAAAATGGAGGTGAAGTTAGGTGTCTGCTCTCTGATGGTGCTTCTTCAATGGGGAACAGAGGGCCTGGGAGTCCTAGGAAGGAGGTGCTATTGGAAAATGAACCTACAGTTTCTACATTGGTGGGAAAGAGAGGCCGTGGCCGTCCAAAAAAGGAGAAACCAT CAGCAGCAAGGCCTGCTGAAACTGGAGATGCTAAATCAATGGGGATCAAGAGAGGTCGCGGAAGACCAAGAAAGGACAGTTCCTTTCAAGCTGTGTTTGCAGAAGCTGCAGGT CAGGTGTCAAGAGATGTCACAGCAGCTCAG CCCGAAGGAGATGCAGATTTACTGGCAAGGAAGGAACCAGAGACTGCAGCTGTAGTTTCGGTGGAGAACAAAGAAACTAGGCCTGCGGATGCTGGGGGTG   TTGTGG TTTCTGAAGAGAAGACATCGATTGAT CCGGTGGAGGCTGGAAGTGTAATGCCATGTGTTAATGCAGAAGTTGATCGCATGAACTCTGACCTGCGCACTGCTAATCCATAGTGTGGCTGGCGTCAGCACTCAGCACAGAAGGGAGGACCTGGATGGCTGGCACTACCTGCAGGTGTGAATGTGTATTCACTGATTTAGCTGGAGACATACTGTGAAAACTGTTAAATGTTGCAACCAAAATTATTACTGTCATGCTGTTAAGTAGTTTCTCAAGATCAACATTGGAGTATGCTTTTAATGATATCCACTTCTCGGATAAATTTTTATAATAGTCCTTAGGTAGCACATATAGTTCCTTTAGGAATGACTGGATATATCATATATGTTGCTTTTAGTGCACCCAGTGGTGATGAGATGCATCAATGTTTACTTCCAATTTGAACATAACAG                                                                                                 ]
[+] EMBL CA765232             [                                                                                                                                                                                                                                                                                                                                                                                                                               GCC CTCCTCTAGTC AGCCTGGACCTGGGAGGCCGTCTGGATT NAACGTGGACC GGCCGCCCTCGCAAGAATGCCACTCCTCCTGTGCTGTCAGTGCCACCCACTGCTGCTGCTGTGTTGGGAGTGAAGCGTGGCCGTGGGCGCCCTAGAAAGGATAAACCATTGCAATCTTGGTCTGTGCTCTCTGGCGGTGCTGCAATGACTAAGAGAGGGCCTGGGAGGCCAAGAAAGAAGAGGCCACTGGAAGCTGGAGGTGTTGTGGCAGCACAGGTAGACACTGCAGATGGAGGTGAGGCTGGAGCCGTTCAAAATGGAGGTGAAGTTAGGTGTCTGCTCTCTGATGGTGCTTCTTCAATGGGGAACAGAGGGCCTGGGAGTCCTAGGAAGGAGGTGCTATTGGAAAATGAACCTACAGTTTCTACATTGGTGGGAAAGAGAGGCCGTGGCCGTCCAAAAAAGGAGAAACCAT CAGCAGCAAGGCCTGCTGAAACTGGAGATGCTAAATCAATGGGGATCAAGAGAGGTCGCGGAAGACCAAGAAAGGACAGTTCCTTTCAAGCTGTGTTTGCAGAAGCTGCAGGT CAGGTGTCAAGAGATGTCACAGCAGCTCAG CCCGAAGGAGATGCAGATTTACTGGCAAGGAAGGAACCAGAGACTGCAGCTGTAGTTTCGGTGGAGAACAAAGAAACTAGGCCTGCAGAT CTGGGGGTGGGTTTGGGGNTTTCTGAAGAGAANACATCGATTGATNCCGGTGGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CB646568             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 GTTGTGGCAGCACAGGTAGACACTGCAGATGGAGGTGAGGCTGGAGCCGTTCAAAATGGAGGTGAAGTTAGGTGTCTGCTCTCTGATGGTGCTTCTTCAATGGGGAACAGAGGGCCTGGGAGTCCTAGGAAGGAGGTGCTATTGGAAAATGAACCTACAGTTTCTACATTGGTGGGAAAGAGAGGCCGTGGCCGTCCAAAAAAGGAGAAACCAT CAGCAGCAAGGCCTGCTGAAACTGGAGATGCTAAATCAATGGGGATCAAGAGAGGTCGCGGAAGACCAAGAAAGGACAGTTCCTTTCAAGCTGTGTTTGCAGAAGCTGCAGGT CAGGTGTCAAGAGATGTCACAGCAGCTCAG CCCGAAGGAGATGCAGATTTACTGGCAAGGAAGGAACCAGAGACTGCAGCTGTAGTTTCGGTGGAGAACAAAGAAACTAGGCCTGCAGATGCTGGGGGTG   TTGTGG TTTCTGAAGAGAAGACATCGATTGAT CCGGTGGAGGCTGGAAGTGTAATGCCATGTGTTAATGCAGAAGTTGATCGCATGAACTCTGACCTGCGCACTGCTAATCCATAGTGTGGCTGGCGTCAGCACTCAGCACAGAAGGGAGGACCTGGATGGCTGGCACTACCTGCAGGTGTGAATGTGTATTCACTGATTTAGCTGGAGACATACTGTGAAAACTGTTAAATGTTGCAACCAAAATTATTACTGTCATGCTGTTAAGTAGTTTCTCAAGATCAACATTGGAGTATGCTTTTAATGATATCCACTTCTCGGATAAATTTT                                                                                                                                                                                                                               ]
[-] EMBL CB646488             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GGCTGGAGCCGTTCAAAATGGAGGTGAAGTTAGGTGTCTGCTCTCTGATGGTGCTTCTTCAATGGGGAACAGAGGGCCTGGGAGTCCTAGGAAGGAGGTGCTATTGGAAAATGAACCTACAGTTTCTACATTGGTGGGAAAGAGAGGCCGTGGCCGTCCAAAAAAGGAGAAACCAT CAGCAGCAAGGCCTGCTGAAACTGGAGATGCTAAATCAATGGGGATCAAGAGAGGTCGCGGAAGACCAAGAAAGGACAGTTCCTTTCAAGCTGTGTTTGCAGAAGCTGCAGGT CAGGTGTCAAGAGATGTCACAGCAGCTCAG CCCGAAGGAGATGCAGATTTACTGGCAAGGAAGGAACCAGAGACTGCAGCTGTAGTTTCGGTGGAGAACAAAGAAACTAGGCCTGCAGATGCTGGGGGTG   TTGTGG TTTCTGAAGAGAAGACATCGATTGAT CCGGTGGAGGCTGGAAGTGTAATGCCATGTGTTAATGCAGAAGTTGATCGCATGAACTCTGACCTGCGCACTGCTAATCCATAGTGTGGCTGGCGTCAGCACTCAGCACAGAAGGGAGGACCTGGATGGCTGGCACTACCTGCAGGTGTGAATGTGTATTCACTGATTTAGCTGGAGACATACTGTGAAAACTGTTAAATGTTGCAACCAAAATTATTACTGTCATGCTGTTAAGTAGTTTCTCAAGATCAACATTGGAGTATGCTTTTAATGATATCCACTTCTCGGATAAATTTTTATAAaaaaaagg                                                                                                                                                                                                                  ]
[+] EMBL AU094845             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CCATNCAGCANCAAGGCCTGCTGAAA TGGAGANCCTAATNCAATGGGGNTCAAGAGAGGTCGCGGAAGACCAAGAAAGGACAGTTCCTTNCAAGCTGTGTTTGCAGAAGCTGCAGGTCCAGGTGTCAAGAGATNTCACAGCAGCTCAGCCCCGAAGGAGATGCAGATTTACTGGCAAGGAAGGAACCAGAGACTGCAGCTGTAGTTTCGGTGGAGAACAAAGAAACTAGGCCTGCAGATGCTGGGGGTG   TTGTGG TTTCTGAAGAGAAGACATCGATTGAT CCGGTGGAGGCTGGAAGTGTAATGCCATGTGTTAATGCAGAAGTTGATCGCATGAACTCTGACCTGCGCACTGCTAATCCATAGTGTGGCTGGCGTCAGCACTCAGCACAGAAGGGAGGACCTGGATGGCTGGCACTACCTGCAGGTGTGAATGTGTATTCACTGATTTAGCTGGAGACATACTGTGAAAACTGTTAAATGTTGCAACCAAAATTATTACTGTCATGCTGTTAAGTAGTTTCTCAAGATCAACATTGGAGTATGCTTTTAATGATATCCACTTCTCGGATAAATTTTTATAATAGTCCTTAGGTAGCACATATAGTTCCTTTAGGAATGACTGGATATATCATATATGTTGCTTTTAGTGCACCCAGTGGTGATGAGATGCATCAATGTTTACTTCCAATTTGAACAAAAAAAAAAAAAA                                                                                          ]
[+] EMBL AU094102             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           TCTGACCTGCGCACTGCTAATCCATAGTGTGGCTGGCGTCAGCACTCAGCACAGAAGGGAGGACCTGGATGGCTGGCACTACCTGCAGGTGTGAATGTGTATTCACTGATTTAGCTGGAGACATACTGTGAAAACTGTTAAATGTTGCAACCAAAATTATTACTGTCATGCTGTTAAGTAGTTTCTCAAGATCAACATTGGAGTATGCTTTTAATGATATCCACTTCTCGGATAAATTTTTATAATAGTCCTTAGGTAGCACATATAGTTCCTTTAGGAATGACTGGATATATCATATATGTTGCTTTTAGTGCACCCAGTGGTGATGAGATGCATCAATGTTTACTTCCAATTTGAACAAAAA                                                                                                   ]
[+] EMBL AU095268             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CCATAGTGTGGCTGGCGTCAGCNCTCAGCACAGAAGGGNGGCCCTGGATGGCTGGCACTACCTGCAGGTNTGAATGTGTATTCNCTGATTTAGCTGGAGACATACTGTGAAAACTNTTAAATGTTGCANCCAAAATTATTACTGTCATGCTGTTAAGTAGTTTCTCAAGATCAACATTGGAGTATGCTTTTAATGATATCCACTTCTCGGATAAATTTTTATAATAGTCCTTAGGTAGCACATATAGTTCCTTTAGGAATGACTGGATATATCATATATGTTGCTTTTAGTGCACCCAGTGGTGATGAGATGCATCAATGTTTACTTCCAATTTGAACATCCATTAGTGTTTCATTCAATCAATATCTCTGTTTTTTCCATGCCTATATCTTAAGTAATTTTGGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_13540#0
GAAAGCTTCCTCCTCCGCGCCGCCTCAAAAGCGCGGACCCGGCCGACCCCGCAAGAATAC
AGCCCTGTTTCCGGTTCCTGTGCTTGAGGCGAAGCCTGGGCGCGGGCGACCCCGGAAGAA
CCCTCTCCCTGTGGCTTCCTCCACCTCCTCTGCTGCTGCTGCTGCTACGGCGTTGAGCCT
GAGAGTGAAGCGGGGACCTGGGAGGCCGCGCAAGAATGCTGCTGCTACCCCGTTGAGACT
GGGAGCGAAGCGGGGACCTGGGAGACCGCGCAAGAATGCCACTGCTACGCCGTTGAGCCT
GGGAGTTAAGCGGGGACCTGGGAGGCCGCGCAAGAATGCTGCTGCTGCTGCCTCTCCCGT
TGCTCCGCCGCCTGCATCTCCACTGAAGCGGGGTGTTGGACGCCCAAGGAAGAACGCCAC
TCCTCTAGTCAAGCCTGGACCTGGGAGGCCGTCTGGATTCAAACGTGGACCAGGCCGCCC
TCGCAAGAATGCCACTCCTCCTGTGCTGTCAGTGCCACCCACTGCTGCTGCTGTGTTGGG
AGTGAAGCGTGGCCGTGGGCGCCCTAGAAAGGATAAACCATTGCAATCTTGGTCTGTGCT
CTCTGGCGGTGCTGCAATGACTAAGAGAGGGCCTGGGAGGCCAAGAAAGAAGAGGCCACT
GGAAGCTGGAGGTGTTGTGGCAGCACAGGTAGACACTGCAGATGGAGGTGAGGCTGGAGC
CGTTCAAAATGGAGGTGAAGTTAGGTGTCTGCTCTCTGATGGTGCTTCTTCAATGGGGAA
CAGAGGGCCTGGGAGTCCTAGGAAGGAGGTGCTATTGGAAAATGAACCTACAGTTTCTAC
ATTGGTGGGAAAGAGAGGCCGTGGCCGTCCAAAAAAGGAGAAACCATCAGCAGCAAGGCC
TGCTGAAACTGGAGATGCTAAATCAATGGGGATCAAGAGAGGTCGCGGAAGACCAAGAAA
GGACAGTTCCTTTCAAGCTGTGTTTGCAGAAGCTGCAGGTCAGGTGTCAAGAGATGTCAC
AGCAGCTCAGCCCGAAGGAGATGCAGATTTACTGGCAAGGAAGGAACCAGAGACTGCAGC
TGTAGTTTCGGTGGAGAACAAAGAAACTAGGCCTGCAGATGCTGGGGGTGTTGTGGTTTC
TGAAGAGAAGACATCGATTGATCCGGTGGAGGCTGGAAGTGTAATGCCATGTGTTAATGC
AGAAGTTGATCGCATGAACTCTGACCTGCGCACTGCTAATCCATAGTGTGGCTGGCGTCA
GCACTCAGCACAGAAGGGAGGACCTGGATGGCTGGCACTACCTGCAGGTGTGAATGTGTA
TTCACTGATTTAGCTGGAGACATACTGTGAAAACTGTTAAATGTTGCAACCAAAATTATT
ACTGTCATGCTGTTAAGTAGTTTCTCAAGATCAACATTGGAGTATGCTTTTAATGATATC
CACTTCTCGGATAAATTTTTATAATAGTCCTTAGGTAGCACATATAGTTCCTTTAGGAAT
GACTGGATATATCATATATGTTGCTTTTAGTGCACCCAGTGGTGATGAGATGCATCAATG
TTTACTTCCAATTTGAACATAAAAGAAAAAAACATTCAATCAATATCTCTGTTTTTTCCA
TGCCTATATCTTAAGTAATTTTGGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AA

consensusID : consensus_13540#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1540
fasta sequence

                              [GAAAGCTTCCTCCTCCGCGCCGCCTCAAAAGCGCGGACCCGGCCGACCCCGCAAGAATACAGCCCTGTTTCCGGTTCCTGTGCTTGAGGCGAAGCCTGGGCGCGGGCGACCCCGGAAGAACCCTCTCCCTGTGGCTTCCTCCACCTCCTCTGCTGCTGCTGCTGCTACGGCGTTGAGCCTGAGAGTGAAGCGGGGACCTGGGAGGCCGCGCAAGAATGCTGCTGCTACCCCGTTGAGACTGGGAGTGAAGCGGGGACCTGGGAGGCCGCGCAAGAATGCTGCTGCTACCCCGTTGAGACTGGGAGCGAAGCGGGGACCTGGGAGACCGCGCAAGAATGCCACTGCTACGCCGTTGAGCCTGGGAGTTAAGCGGGGACCTGGGAGGCCGCGCAAGAATGCTGCTGCTGCTGCCTCTCCCGTTGCTCCGCCGCCTGCATCTCCACTGAAGCGGGGTGTTGGACGCCCAAGGAAGAACGCCACTCCTCTAGTCAAGCCTGGACCTGGGAGGCCGTCTGGATTCAAACGTGGACCAGGCCGCCCTCGCAAGAATGCCACTCCTCCTGTGCTGTCAGTGCCACCCACTGCTGCTGCTGTGTTGGGAGTGAAGCGTGGCCGTGGGCGCCCTAGAAAGGATAAACCATTGCAATCTTGGTCTGTGCTCTCTGGCGGTGCTGCAATGACTAAGAGAGGCGCTGGGAGGCCAAGAAAGAAGAGGCCACTGGAAGCTGGAGGTGTTGTGGCAGCACAGGTAGACACTGCAGATGGAGGTGAGGCTGGAGCCGTTCAAAATGGAGGTGAAGTTAGGTGTCTGCTCTCTGATGGTGCTTCTTCAATGGGGAACAGAGGGCCTGGGAGTCCTAGGAAGGAGGTGCTATTGGAAAATGAACCTACAGTTTCTACATTGGTGGGAAAGAGAGGCCGTGGCCGTCCAAAAAAGGAGAAACCATCAGCAGCAAGGCCTGCTGAAACTGGAGATGCTAAATCAATGGGGATCAAGAGAGGTCGCGGAAGACCAAGAAAGGACAGTTCCTTTCAAGCTGTGTTTGCAGAAGCTGCAGGTCAGGTGTCAAGAGATGTCACAGCAGCTCAGCCCGAAGGAGATGCAGATTTACT-GGCAAGGAAGGAACCAGAGACTGCAGCTGTAGTTTCGGTGGAGAACAAAGAAACTAGGCCTGCAGATGCTGGGGGTGTTGTGGTTTCTGAAGAGAAGACATCGATTGATCCGGTGGAGGCTGGAAGTGTAATGCCATGTGTTAATGCAGAAGTTGATCGCATGAACTCTGACCTGCGCACTGCTAATCCATAGTGTGGCTGGCGTCAGCACTCAGCACAGAAGGGAGGACCTGGATGGCTGGCACTACCTGCAGGTGTGAATGTGTATTCACACTGATTTAGCTGGAGACATACTGTGAAAACTGTTAAATGTTGCAACCAAAATTATTACTGTCATGCTGTTAAGTAGTTTCTCAAGATCAACATTGGAGTATGCTTTTAATGATACCACTTCTCGGATAAATTTTTATAATAAAAAAAAAAAAAA]

[+] EMBL OSRNAATH1            [GAAAGCTTCCTCCTCCGCGCCGCCTCAAAAGCGCGGACCCGGCCGACCCCGCAAGAATACAGCCCTGTTTCCGGTTCCTGTGCTTGAGGCGAAGCCTGGGCGCGGGCGACCCCGGAAGAACCCTCTCCCTGTGGCTTCCTCCACCTCCTCTGCTGCTGCTGCTGCTACGGCGTTGAGCCTGAGAGTGAAGCGGGGACCTGGGAGGCCGCGCAAGAATGCTGCTGCTACCCCGTTGAGACTGGGAGTGAAGCGGGGACCTGGGAGGCCGCGCAAGAATGCTGCTGCTACCCCGTTGAGACTGGGAGCGAAGCGGGGACCTGGGAGACCGCGCAAGAATGCCACTGCTACCCCGTTGAGCCTGGGAGTTAAGCGGGGACCTGGGAGGCCGCGCAAGAATGCTGCTGCTGCTGCCTCTCCCGTTGCTCCGCCGCCTGCATCTCCACTGAAGCGGGGTGTTGGACGCCCAAGGAAGAACGCCACTCCTCTAGTCAAGCCTGGACCTGGGAGGCCGTCTGGATTCAAACGTGGACCAGGCCGCCCTCGCAAGAATGCCACTCCTCCTGTGCTGTCAGTGCCACCCACTGCTGCTGCTGTGTTGGGAGTGAAGCGTGGCCGTGGGCGCCCTAGAAAGGATAAACCATTGCAATCTTGGTCTGTGCTCTCTGGCGGTGCTGCAATGACTAAGAGAGGCGCTGGGAGGCCAAGAAAGAAGAGGCCACTGGAAGCTGGAGGTGTTGTGGCAGCACAGGTAGACACTGCAGATGGAGGTGAGGCTGGAGCCGTTCAAAATGGAGGTGAAGTTAGGTGTCTGCTCTCTGATGGTGCTTCTTCAATGGGGAACAGAGGGCCTGGGAGTCCTAGGAAGGAGGTGCTATTGGAAAATGAACCTACAGTTTCTACATTGGTGGGAAAGAGAGGCCGTGGCCGTCCAAAAAAGGAGAAACCATCAGCAGCAAGGCCTGCTGAAACTGGAGATGCTAAATCAATGGGGATCAAGAGAGGTCGCGGAAGACCAAGAAAGGACAGTTCCTTTCAAGCTGTGTTTGCAGAAGCTGCAGGTCAGGTGTCAAGAGATGTCACAGCAGCTCAGCCCGAAGGAGATGCAGATTTACT GGCAAGGAAGGAACCAGAGACTGCAGCTGTAGTTTCGGTGGAGAACAAAGAAACTAGGCCTGCAGATGCTGGGGGTGTTGTGGTTTCTGAAGAGAAGACATCGATTGATCCGGTGGAGGCTGGAAGTGTAATGCCATGTGTTAATGCAGAAGTTGATCGCATGAACTCTGACCTGCGCACTGCTAATCCATAGTGTGGCTGGCGTCAGCACTCAGCACAGAAGGGAGGACCTGGATGGCTGGCACTACCTGCAGGTGTGAATGTGTATTCACACTGATTTAGCTGGAGACATACTGTGAAAACTGTTAAATGTTGCAACCAAAATTATTACTGTCATGCTGTTAAGTAGTTTCTCAAGATCAACATTGGAGTATGCTTTTAATGATACCACTTCTCGGATAAATTTTTATAATAAAAAAAAAAAAAA]
[+] EMBL CB646487             [GAAAGCTTCCTCCTCCGCGCCGCCTCAAAAGCGCGGACCCGGCCGACCCCGCAAGAATACAGCCCTGTTTCCGGTTCCTGTGCTTGAGGCGAAGCCTGGGCGCGGGCGACCCCGGAAGAACCCTCTCCCTGTGGCTTCCTCCACCTCCTCTGCTGCTGCTGCTGCTACGGCGTTGAGCCTGAGAGTGAAGCGGGGACCTGGGAGGCCGCGCAAGAATGCTGCTGCTACCCCGTTGAGACTGGGAGTGAAGCGGGGACCTGGGAGGCCGCGCAAGAATGCTGCTGCTACCCCGTTGAGACTGGGAGCGAAGCGGGGACCTGGGAGACCGCGCAAGAATGCCACTGCTACGCCGTTGAGCCTGGGAGTTAAGCGGGGACCTGng                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CB646567             [GAAAGCTTCCTCCTCCGCGCCGCCTCAAAAGCGCGGACCCGGCCGACCCCGCAAGAATACAGCCCTGTTTCCGGTTCCTGTGCTTGAGGCGAAGCCTGGGCGCGGGCGACCCCGGAAGAACCCTCTCCCTGTGGCTTCCTCCACCTCCTCTGCTGCTGCTGCTGCTACGGCGTTGAGCCTGAGAGTGAAGCGGGGACCTGGGAGGCCGCGCAAGAATGCTGCTGCTACCCCGTTGAGACTGGGAGTGAAGCGGGGACCTGGGAGGCCGCGCAAGAATGCTGCTGCTACCCCGTTGAGACTGGGAGCGAAGCGGGGACCTGGGAGACCGCGCAAGAATGCCACTGCTACGCCGTTGAGCCTGGGAGTTAAGCGGGGACC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AU031148             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             GTTCAAAATGGAGGTGAAGTTAGGTGTCTGCTCTCTGATGGTGCTTCTTCAATGGGGAACAGAGGGCCTGGGAGTCCTAGGAAGGAGGTGCTATTGGAAAATGAACCTACAGTTTCTACATTGGTGGGAAAGAGAGGCCGTGGCCGTCCAAAAAAGGAGAAACCATCAGCAGCAAGGCCTGCTGAAACTGGAGATGCTAAATCAATGGGGATCAAGAGAGGTCGCGGAAGACCAAGAAAGGACAGTTCCTTTCAAGCTGTGTTTGCAGAAGCTGCAGGTCANGTGTCAAGAGATGTCACAGCAGCTCAGCCCGAANGAGATGCAGATTTACTGGGCAAGGAAGGAACCAGAGACTGCAGCTGTAGTTTCGGTGGAGAACAAAaga                                                                                                                                                                                                                                                                                                                                                                                       ]




>consensus_13540#1
GAAAGCTTCCTCCTCCGCGCCGCCTCAAAAGCGCGGACCCGGCCGACCCCGCAAGAATAC
AGCCCTGTTTCCGGTTCCTGTGCTTGAGGCGAAGCCTGGGCGCGGGCGACCCCGGAAGAA
CCCTCTCCCTGTGGCTTCCTCCACCTCCTCTGCTGCTGCTGCTGCTACGGCGTTGAGCCT
GAGAGTGAAGCGGGGACCTGGGAGGCCGCGCAAGAATGCTGCTGCTACCCCGTTGAGACT
GGGAGTGAAGCGGGGACCTGGGAGGCCGCGCAAGAATGCTGCTGCTACCCCGTTGAGACT
GGGAGCGAAGCGGGGACCTGGGAGACCGCGCAAGAATGCCACTGCTACGCCGTTGAGCCT
GGGAGTTAAGCGGGGACCTGGGAGGCCGCGCAAGAATGCTGCTGCTGCTGCCTCTCCCGT
TGCTCCGCCGCCTGCATCTCCACTGAAGCGGGGTGTTGGACGCCCAAGGAAGAACGCCAC
TCCTCTAGTCAAGCCTGGACCTGGGAGGCCGTCTGGATTCAAACGTGGACCAGGCCGCCC
TCGCAAGAATGCCACTCCTCCTGTGCTGTCAGTGCCACCCACTGCTGCTGCTGTGTTGGG
AGTGAAGCGTGGCCGTGGGCGCCCTAGAAAGGATAAACCATTGCAATCTTGGTCTGTGCT
CTCTGGCGGTGCTGCAATGACTAAGAGAGGCGCTGGGAGGCCAAGAAAGAAGAGGCCACT
GGAAGCTGGAGGTGTTGTGGCAGCACAGGTAGACACTGCAGATGGAGGTGAGGCTGGAGC
CGTTCAAAATGGAGGTGAAGTTAGGTGTCTGCTCTCTGATGGTGCTTCTTCAATGGGGAA
CAGAGGGCCTGGGAGTCCTAGGAAGGAGGTGCTATTGGAAAATGAACCTACAGTTTCTAC
ATTGGTGGGAAAGAGAGGCCGTGGCCGTCCAAAAAAGGAGAAACCATCAGCAGCAAGGCC
TGCTGAAACTGGAGATGCTAAATCAATGGGGATCAAGAGAGGTCGCGGAAGACCAAGAAA
GGACAGTTCCTTTCAAGCTGTGTTTGCAGAAGCTGCAGGTCAGGTGTCAAGAGATGTCAC
AGCAGCTCAGCCCGAAGGAGATGCAGATTTACTGGCAAGGAAGGAACCAGAGACTGCAGC
TGTAGTTTCGGTGGAGAACAAAGAAACTAGGCCTGCAGATGCTGGGGGTGTTGTGGTTTC
TGAAGAGAAGACATCGATTGATCCGGTGGAGGCTGGAAGTGTAATGCCATGTGTTAATGC
AGAAGTTGATCGCATGAACTCTGACCTGCGCACTGCTAATCCATAGTGTGGCTGGCGTCA
GCACTCAGCACAGAAGGGAGGACCTGGATGGCTGGCACTACCTGCAGGTGTGAATGTGTA
TTCACACTGATTTAGCTGGAGACATACTGTGAAAACTGTTAAATGTTGCAACCAAAATTA
TTACTGTCATGCTGTTAAGTAGTTTCTCAAGATCAACATTGGAGTATGCTTTTAATGATA
CCACTTCTCGGATAAATTTTTATAATAAAAAAAAAAAAAA

consensusID : consensus_13540#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 275
fasta sequence

                              [GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGTCACAGCAGCTCAGCCCGAAGGAGATGCAGATTTACTGGCAAGGAAGGAACCAGAGACTGCAGCTGTAGTTTCGGTGGAGAACAAAGAAACTAGGCCTGCAGATGCTGGGGGTGTTGTGGTTTCTGAAGAGAAGACATCGATTGATCCGGTGGAGGCTGGAAGTGTAATGCCATGTGTTAATGCAGAAGTTGATCGCATGAACTCTGACCTGCGCCTCGTGCCGAAT]

[+] EMBL CA754595             [GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGTCACAGCAGCTCAGCCCGAAGGAGATGCAGATTTACTGGCAAGGAAGGAACCAGAGACTGCAGCTGTAGTTTCGGTGGAGAACAAAGAAACTAGGCCTGCAGATGCTGGGGGTGTTGTGGTTTCTGAAGAGAAGACATCGATTGATCCGGTGGAGGCTGGAAGTGTAATGCCATGTGTTAATGCAGAAGTTGATCGCATGAACTCTGACCTGCGCCTCGTGCCGAAT]




>consensus_13540#2
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGTCACAGCAGCTC
AGCCCGAAGGAGATGCAGATTTACTGGCAAGGAAGGAACCAGAGACTGCAGCTGTAGTTT
CGGTGGAGAACAAAGAAACTAGGCCTGCAGATGCTGGGGGTGTTGTGGTTTCTGAAGAGA
AGACATCGATTGATCCGGTGGAGGCTGGAAGTGTAATGCCATGTGTTAATGCAGAAGTTG
ATCGCATGAACTCTGACCTGCGCCTCGTGCCGAAT

consensusID : consensus_13540#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 224
fasta sequence

                              [TCTGACTGCGCCTGCTATCATAGTGTGCTGTCGAGTCAGTCACTCATGCCTGAGAGAGACTGATGCTGCACTACTGCAGTGTGATGTGTATCACTGATTAGCTGAGACATACTGTGAAACTGTTAAATGTTGCAACTCAAATTATTACTGTCATGCTGTTACTACGTAGTTTCTCAGATCATACATTGGAGTATGCTTTTAATGATATCCACTTCTCGGATAAA]

[-] EMBL AA749796             [TCTGACTGCGCCTGCTATCATAGTGTGCTGTCGAGTCAGTCACTCATGCCTGAGAGAGACTGATGCTGCACTACTGCAGTGTGATGTGTATCACTGATTAGCTGAGACATACTGTGAAACTGTTAAATGTTGCAACTCAAATTATTACTGTCATGCTGTTACTACGTAGTTTCTCAGATCATACATTGGAGTATGCTTTTAATGATATCCACTTCTCGGATAAA]




>consensus_13540#3
TCTGACTGCGCCTGCTATCATAGTGTGCTGTCGAGTCAGTCACTCATGCCTGAGAGAGAC
TGATGCTGCACTACTGCAGTGTGATGTGTATCACTGATTAGCTGAGACATACTGTGAAAC
TGTTAAATGTTGCAACTCAAATTATTACTGTCATGCTGTTACTACGTAGTTTCTCAGATC
ATACATTGGAGTATGCTTTTAATGATATCCACTTCTCGGATAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13540#0      ------------------------------------------------------------
consensus_13540#3      ------------------------------------------------------------
consensus_13540#1      GAAAGCTTCCTCCTCCGCGCCGCCTCAAAAGCGCGGACCCGGCCGACCCCGCAAGAATAC 60
consensus_13540#2      ------------------------------------------------------------
                                                                                   

consensus_13540#0      GAAAGCTTCCTCCTCCGCGCCGCCTCAAAAGCGCGGACCCGGCCGACCCCGCAAGAATAC 60
consensus_13540#3      ------------------------------------------------------------
consensus_13540#1      AGCCCTGTTTCCGGTTCCTGTGCTTGAGGCGAAGCCTGGGCGCGGGCGACCCCGGAAGAA 120
consensus_13540#2      ------------------------------------------------------------
                                                                                   

consensus_13540#0      AGCCCTGTTTCCGGTTCCTGTGCTTGAGGCGAAGCCTGGGCGCGGGCGACCCCGGAAGAA 120
consensus_13540#3      ------------------------------------------------------------
consensus_13540#1      CCCTCTCCCTGTGGCTTCCTCCACCTCCTCTGCTGCTGCTGCTGCTACGGCGTTGAGCCT 180
consensus_13540#2      ------------------------------------------------------------
                                                                                   

consensus_13540#0      CCCTCTCCCTGTGGCTTCCTCCACCTCCTCTGCTGCTGCTGCTGCTACGGCGTTGAGCCT 180
consensus_13540#3      ------------------------------------------------------------
consensus_13540#1      GAGAGTGAAGCGGGGACCTGGGAGGCCGCGCAAGAATGCTGCTGCTACCCCGTTGAGACT 240
consensus_13540#2      ------------------------------------------------------------
                                                                                   

consensus_13540#0      GAGAGTGAAGCGGGGACCTGGGAGGCCGCGCAAGAATGCTGCTGCTACCCCGTTGAGACT 240
consensus_13540#3      ------------------------------------------------------------
consensus_13540#1      GGGAGTGAAGCGGGGACCTGGGAGGCCGCGCAAGAATGCTGCTGCTACCCCGTTGAGACT 300
consensus_13540#2      ------------------------------------------------------------
                                                                                   

consensus_13540#0      GGGAGCGAAGCGGGGACCTGGGAGACCGCGCAAGAATGCCACTGCTACGCCGTTGAGCCT 300
consensus_13540#3      ------------------------------------------------------------
consensus_13540#1      GGGAGCGAAGCGGGGACCTGGGAGACCGCGCAAGAATGCCACTGCTACGCCGTTGAGCCT 360
consensus_13540#2      ------------------------------------------------------------
                                                                                   

consensus_13540#0      GGGAGTTAAGCGGGGACCTGGGAGGCCGCGCAAGAATGCTGCTGCTGCTGCCTCTCCCGT 360
consensus_13540#3      ------------------------------------------------------------
consensus_13540#1      GGGAGTTAAGCGGGGACCTGGGAGGCCGCGCAAGAATGCTGCTGCTGCTGCCTCTCCCGT 420
consensus_13540#2      ------------------------------------------------------------
                                                                                   

consensus_13540#0      TGCTCCGCCGCCTGCATCTCCACTGAAGCGGGGTGTTGGACGCCCAAGGAAGAACGCCAC 420
consensus_13540#3      ------------------------------------------------------------
consensus_13540#1      TGCTCCGCCGCCTGCATCTCCACTGAAGCGGGGTGTTGGACGCCCAAGGAAGAACGCCAC 480
consensus_13540#2      ------------------------------------------------------------
                                                                                   

consensus_13540#0      TCCTCTAGTCAAGCCTGGACCTGGGAGGCCGTCTGGATTCAAACGTGGACCAGGCCGCCC 480
consensus_13540#3      ------------------------------------------------------------
consensus_13540#1      TCCTCTAGTCAAGCCTGGACCTGGGAGGCCGTCTGGATTCAAACGTGGACCAGGCCGCCC 540
consensus_13540#2      ------------------------------------------------------------
                                                                                   

consensus_13540#0      TCGCAAGAATGCCACTCCTCCTGTGCTGTCAGTGCCACCCACTGCTGCTGCTGTGTTGGG 540
consensus_13540#3      ------------------------------------------------------------
consensus_13540#1      TCGCAAGAATGCCACTCCTCCTGTGCTGTCAGTGCCACCCACTGCTGCTGCTGTGTTGGG 600
consensus_13540#2      ------------------------------------------------------------
                                                                                   

consensus_13540#0      AGTGAAGCGTGGCCGTGGGCGCCCTAGAAAGGATAAACCATTGCAATCTTGGTCTGTGCT 600
consensus_13540#3      ------------------------------------------------------------
consensus_13540#1      AGTGAAGCGTGGCCGTGGGCGCCCTAGAAAGGATAAACCATTGCAATCTTGGTCTGTGCT 660
consensus_13540#2      ------------------------------------------------------------
                                                                                   

consensus_13540#0      CTCTGGCGGTGCTGCAATGACTAAGAGAGGGCCTGGGAGGCCAAGAAAGAAGAGGCCACT 660
consensus_13540#3      ------------------------------------------------------------
consensus_13540#1      CTCTGGCGGTGCTGCAATGACTAAGAGAGGCGCTGGGAGGCCAAGAAAGAAGAGGCCACT 720
consensus_13540#2      ------------------------------------------------------------
                                                                                   

consensus_13540#0      GGAAGCTGGAGGTGTTGTGGCAGCACAGGTAGACACTGCAGATGGAGGTGAGGCTGGAGC 720
consensus_13540#3      ------------------------------------------------------------
consensus_13540#1      GGAAGCTGGAGGTGTTGTGGCAGCACAGGTAGACACTGCAGATGGAGGTGAGGCTGGAGC 780
consensus_13540#2      ------------------------------------------------------------
                                                                                   

consensus_13540#0      CGTTCAAAATGGAGGTGAAGTTAGGTGTCTGCTCTCTGATGGTGCTTCTTCAATGGGGAA 780
consensus_13540#3      ------------------------------------------------------------
consensus_13540#1      CGTTCAAAATGGAGGTGAAGTTAGGTGTCTGCTCTCTGATGGTGCTTCTTCAATGGGGAA 840
consensus_13540#2      ------------------------------------------------------------
                                                                                   

consensus_13540#0      CAGAGGGCCTGGGAGTCCTAGGAAGGAGGTGCTATTGGAAAATGAACCTACAGTTTCTAC 840
consensus_13540#3      ------------------------------------------------------------
consensus_13540#1      CAGAGGGCCTGGGAGTCCTAGGAAGGAGGTGCTATTGGAAAATGAACCTACAGTTTCTAC 900
consensus_13540#2      ------------------------------------------------------------
                                                                                   

consensus_13540#0      ATTGGTGGGAAAGAGAGGCCGTGGCCGTCCAAAAAAGGAGAAACCATCAGCAGCAAGGCC 900
consensus_13540#3      ------------------------------------------------------------
consensus_13540#1      ATTGGTGGGAAAGAGAGGCCGTGGCCGTCCAAAAAAGGAGAAACCATCAGCAGCAAGGCC 960
consensus_13540#2      ------------------------------------------------------------
                                                                                   

consensus_13540#0      TGCTGAAACTGGAGATGCTAAATCAATGGGGATCAAGAGAGGTCGCGGAAGACCAAGAAA 960
consensus_13540#3      ------------------------------------------------------------
consensus_13540#1      TGCTGAAACTGGAGATGCTAAATCAATGGGGATCAAGAGAGGTCGCGGAAGACCAAGAAA 1020
consensus_13540#2      ------------------------------------------------------------
                                                                                   

consensus_13540#0      GGACAGTTCCTTTCAAGCTGTGTTTGCAGAAGCTGCAGGTCAGGTGTCAAGAGATGTCAC 1020
consensus_13540#3      ------------------------------------------------------------
consensus_13540#1      GGACAGTTCCTTTCAAGCTGTGTTTGCAGAAGCTGCAGGTCAGGTGTCAAGAGATGTCAC 1080
consensus_13540#2      ------------------------------------------------------------
                                                                                   

consensus_13540#0      AGCAGCTCAGCCCGAAGGAGATGCAGATTTACTGGCAAGGAAGGAACCAGAGACTGCAGC 1080
consensus_13540#3      ------------------------------------------------------------
consensus_13540#1      AGCAGCTCAGCCCGAAGGAGATGCAGATTTACTGGCAAGGAAGGAACCAGAGACTGCAGC 1140
consensus_13540#2      ------------------------------------------------------------
                                                                                   

consensus_13540#0      TGTAGTTTCGGTGGAGAACAAAGAAACTAGGCCTGCAGATGCTGGGGGTGTTGTGGTTTC 1140
consensus_13540#3      ------------------------------------------------------------
consensus_13540#1      TGTAGTTTCGGTGGAGAACAAAGAAACTAGGCCTGCAGATGCTGGGGGTGTTGTGGTTTC 1200
consensus_13540#2      ------------------------------------------------------------
                                                                                   

consensus_13540#0      TGAAGAGAAGACATCGATTGATCCGGTGGAGGCTGGAAGTGTAATGCCATGTGTTAATGC 1200
consensus_13540#3      ------------------------------------------------------------
consensus_13540#1      TGAAGAGAAGACATCGATTGATCCGGTGGAGGCTGGAAGTGTAATGCCATGTGTTAATGC 1260
consensus_13540#2      ------------------------------------------------------------
                                                                                   

consensus_13540#0      AGAAGTTGATCGCATGAACTCTGACCTGCGCACTGCTAATCCATAGTGTGGC-TGGCGTC 1259
consensus_13540#3      -------------------TCTGAC-TGCGC-CTGCTA--TCATAGTGTGCTGTCGAGTC 37
consensus_13540#1      AGAAGTTGATCGCATGAACTCTGACCTGCGCACTGCTAATCCATAGTGTGGC-TGGCGTC 1319
consensus_13540#2      -----GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGTCACAGC 55
                                                  * *            * ** * *   *     *

consensus_13540#0      AG-CACTCAGCACAGAAGGGAGGACCTGGATGGCTGGCACTACCTGCAGGTGTGAATGTG 1318
consensus_13540#3      AGTCACTCATGCCTGA---GAGAGACTGAT--GCTG-CACTAC-TGCAG-TGTGA-TGTG 88
consensus_13540#1      AG-CACTCAGCACAGAAGGGAGGACCTGGATGGCTGGCACTACCTGCAGGTGTGAATGTG 1378
consensus_13540#2      AG---CTCA-GCCCGAAG-GAGATGCAGATTTACTGGCAAGGAAGGAACCAGAGACTGCA 110
                       **   ****   * **   ***   * *     *** **      * *   * ** **  

consensus_13540#0      TATT--CACTGATTTAGCTGGAGACATACTGTGAAAACTGTTAAATGTTGCAACCAAAAT 1376
consensus_13540#3      TAT---CACTGATT-AGCTG-AGACATACTGTGAAA-CTGTTAAATGTTGCAACTCAAAT 142
consensus_13540#1      TATTCACACTGATTTAGCTGGAGACATACTGTGAAAACTGTTAAATGTTGCAACCAAAAT 1438
consensus_13540#2      GCT----GTAGTTTCGGTGGAGAACAAAGAAACTAGGCCTGCAGATGCTGGGGGTGTTGT 166
                         *       * **  *  *   *** *      *  *    * *** **         *

consensus_13540#0      TATTACTGTCATGCTGTTAA---GTAGTTTCTCAAGA-TCAACATTGGAGTATGCTTT-- 1430
consensus_13540#3      TATTACTGTCATGCTGTTACTACGTAGTTTCTCAGAT-CATACATTGGAGTATGCTTT-- 199
consensus_13540#1      TATTACTGTCATGCTGTTAA---GTAGTTTCTCAAGA-TCAACATTGGAGTATGCTTT-- 1492
consensus_13540#2      GGTTTCTGAAGAGAAGACATCGATTGATCCGGTGGAGGCTGGAAGTGTAATGCCATGTGT 226
                         ** ***    *  *  *     *  *               * ** * *    * *  

consensus_13540#0      TAATGATATCCACTTCTCGGATAAATTTTTATAATAGTCCTTAGGTAGCACATATAGTTC 1490
consensus_13540#3      TAATGATATCCACTTCTCGGATAAA----------------------------------- 224
consensus_13540#1      TAATGATA-CCACTTCTCGGATAAATTTTTATAATAAAAAAAAAAAAAA----------- 1540
consensus_13540#2      TAATG-CAGAAGTTGATCGCATGAACTCTGACCTGCGCCTCGTGCCGAAT---------- 275
                       *****  *     *  *** ** **                                   

consensus_13540#0      CTTTAGGAATGACTGGATATATCATATATGTTGCTTTTAGTGCACCCAGTGGTGATGAGA 1550
consensus_13540#3      ------------------------------------------------------------
consensus_13540#1      ------------------------------------------------------------
consensus_13540#2      ------------------------------------------------------------
                                                                                   

consensus_13540#0      TGCATCAATGTTTACTTCCAATTTGAACATAAAAGAAAAAAACATTCAATCAATATCTCT 1610
consensus_13540#3      ------------------------------------------------------------
consensus_13540#1      ------------------------------------------------------------
consensus_13540#2      ------------------------------------------------------------
                                                                                   

consensus_13540#0      GTTTTTTCCATGCCTATATCTTAAGTAATTTTGGTGAAAAAAAAAAAAAAAAAAAAAAAA 1670
consensus_13540#3      ------------------------------------------------------------
consensus_13540#1      ------------------------------------------------------------
consensus_13540#2      ------------------------------------------------------------
                                                                                   

consensus_13540#0      AAAAAAAAAAAA 1682
consensus_13540#3      ------------
consensus_13540#1      ------------
consensus_13540#2      ------------