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Oryza sativa
cluster # 13542 cluster # 13542       Sequences # 13       consensus # 5


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13542#0 length = 840 sequences # 5  
consensus_13542#1 length = 785 sequences # 5  
consensus_13542#2 length = 401 sequences # 1  
consensus_13542#3 length = 319 sequences # 1  
consensus_13542#4 length = 170 sequences # 1  

consensusID : consensus_13542#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 840
fasta sequence
                              [AGCGTGAACGGCGTGAGTCCAACCTCCACGGCGGGGCAACAATGGCGAACGACAGCGATCCCCTCCTGAATCCCCCGGCTCCGGCGAGCAATCGCGGCAACGGCGGCGTGCGCCGCGTCCCGTGGGCGTCCCTGATCGGCTTCGTCGCCCTCGCCGTCAACTTCGCGCTCTGCATCTACCGCGCGGAA-GGGGATCGCGGCGCGATCGCCTTCGTCACCTTCGCCTATCTCAACCTGCTGCTCCTCTTCTGGTGCATCCGCCAGTTCGATCAGGCGCCGCACGGATCGGCGGCGAGGGGCCGGATCAGGGTCGCCGTCTGGATCCTCGCCACATCGCTCACCGCCGTCTTTACCTGGAAGGTGGCCGCGCTGATGCCGCTCCCCGTCGCCGCCGTGGCGTGGGTCATGG-CCGCGG-CCA-CCGTGGTCGGTGGATTCTACGGCTTCTTCATCCATGAGGACAAGT----GATCGATCCAGGATCGGATGATCAAATCG-CAAAATCGGAAAAGATTACTGCTCCA-TT-GGGTCTACTGCTTTTATGGCTTCAGGTTGTATATCGGTCA-GGTTAATTATGTGGTGGTTGATATCGACTCGATCGCCGGATGCACTGTGAGAGTGTTACATATCATAAATAAATGAAGTCTGGTGTTATG-T-CATTACAAAAAAATTGGTAATGGGTCTACTTGTATATTTTGTGTGATCCCCGGCACAAAAAAAAAAAACCCAAGGGGGCCCGGACACATCCCATTTGTGACGTCACTACGTAATTTNTAACNTGAAAGGAACCGGCTTCNCAATTCGCAAACTCCTTACGGGGATTAGAGCCAACNTCANCGCCAATGAG]

[+] EMBL CA753336             [AGCGTGAACGGCGTGAGTCCAACCTCCACGGCGGGGCAACAATGGCGAACGACAGCGATCCCCTCCTGAATCCCCCGGCTCCGGCGAGCAATCGCGGCAACGGCGGCGTGCGCCGCGTCCCGTGGGCGTCCCTGATCGGCTTCGTCGCCCTCGCCGTCAACTTCGCGCTCTGCATCTACCGCGCGGAA GGGGATCGCGGCGCGATCGCCTTCGTCACCTTCGCCTATCTCAACCTGCTGCTCCTCTTCTGGTGCATCCGCCAGTTCGATCAGGCGCCGCACGGATCGGCGGCGAGGGGCCGGATCAGGGTCGCCGTCTGGATCCTCGCCACATCGCTCACCGCCGTCTTTACCTGGAAGGTGGCCGCGCTGATGCCGCTCCCCGTCGCCGCCGTGGCGTGGGTCATGG CCGCGG CCA CCGTGGTCGGTGGATTCTACGGCTTCTTCATCCATGAGGACAAGT    GATCGATCCAGGATCGGATGATCAAATCG CAAAATCGGAAAAGATTACTGCCTCA TTGGGGTCTACTGCTTTTATGGCTTCAGGGTGTATATCGGTCAGGGTTAA TATGTGGTGGTNGATATCCACCCCATCCCCGGATGCACTGTGAGAGTGTACCATAT ATAAATAAATGAGGT TGGTGTAATG T CATTACACAGTAATTGGTAATGGGTCTACTTGTATATTTTGTGTGATCCCCGGCACAAAAAAAAAAAACCCAAGGGGGCCCGGACACATCCCATTTGTGACGTCACTACGTAATTTNTAACNTGAAAGGAACCGGCTTCNCAATTCGCAAACTCCTTACGGGGATTAGAGCCAACNTCANCGCCAATGAG]
[+] EMBL BI797037             [                                                                                                                CCGCGTCCCGTGGGCGTCCCGGATCGGCTTCGTCGCCCTCGCCGTCAACTTCGCGCTCTGCATCT CCGCGCGGAATGGGGATCGCGGCGCGATCGCCTTCGTCACCTTCGCCTATCTCAACCTGCTGCTCCTCTTCTGGTGCATCCGCCAGTTCGATCAGGC CCGCACGGATCGGCGGCGA GGGCCGGATCA GGTCCCCGTCTGGATCCTCGCCACATCGCTCACCGCCGTCTTTACCTGGAAGGT GCCGCGCTGATGCCGCTCCCCGTCGCCGCCGTGGCGTGGGTCATGGCCCGCGG CCA CCGTGGTCGGTGGATTCTACGGCTTCTTCATCCATGAGGACAAGT    GATCGATCCAGGATCGGATGATCAAATCGCCAAAATCGGAAAAGATTACTGCTCCA TT GGGTCTACTGCTTTTATGGCTTCAGGTTGTATATCGGTCA GGTTAATTATGTGGTGGTTGATATCGACTCGATCGCCGGATGCACTGTGAGAGTGTTACATATCATAAATAAATGAAGTCTGGTGTTATGTT CATTAAAAA                                                                                                                                                                                     ]
[+] EMBL BI795631             [                                                                                                                              CGTCCCTGATCGGCTTCGTCGCCCTCGCCGTCAACTTCGCGCTCTGCATCTACCGCGCGGAA GGGGATC CGGCGCGATCGCCTTCGTCACCTTCGCCTATCTCAACCTGCTGCTCCTCTTCTGGTGCATCCGCCAGTTCGATCAGGCGCCGCACGGATCGGCGGCGAGGGGCCGGATCAGGGTCGCCGTCTGGATCCTCGCCACATCGCTCACCGCCGTCTTTACCTGGAAGGT GCCGCGCTGATGCCGCTCCCCGTCGCCGCCGTGGCGTGGGTCATGG CCGCGG CCA CCGTGGTCGGTGGATTCTACGGCTTCTTCATCCATGAGGACAAGT    GATCGATCCAGGATCGGATGATCAAATCG CAAAATCGGAAAAGATTACTGCTCCACTT GGGTCTACTGCTTTTATGGCTTCAGGTTGTATATCGGTCA GGTTAATTATGTGGTGGTTGATATCGACTCGATCGCCGGATGC CTGTGAGAGTGTTACATATCATAAATAAATGAAGTCTGGTGTTATG     TT CAAAAA                                                                                                                                                                                   ]
[+] EMBL AU094524             [                                                                                                                                                                                                                                                                                                                                     TCGCCACATCGCTCACCGCCGTCTTTACATGGAAGNTGGCGGCGNTGATGCCGCTCCCCGTCGCCGCCGTGGCGTGGGTCATGG CCGCGG CCA CCGTGGTCGGTGGATTCTACGGCTTCTTCATCCATGAGGACAAGTGATCGATCGATCCATGATCGGATGATCAAATCG CAAAATCGGAAAAGATTACTGCTCCA TT GGGTCTACTGCTTTTATGGCTTCAGGTTGTATATCGGTCA GGTTAATTATGTGGTGGTTGATATCGACTCGATCGCCGGATGCACTGTGAGAGTGTTGCATATCATAAATAAATGAAGTCTGGTGCTATA TGCATTACAACAAAAaaaaaaa                                                                                                                                                                          ]
[+] EMBL BI795210             [                                                                                                                                                                                                                                                                                                                                                                             CGCGCTGATGCCGCTCCCCGTCGCCGCCGTGGCGTGGGTCATGG CCGCGGCCCACCCGTGGTCGGTGGATTCTACGGCTTCTTCATCCATGAGGACAAGT    GATCGATCCAGGATCGGATGATCAAATCG C AAATCGGAAAAGATTACTGCTCCA TT GGGTCTACTGCTTTTATGGCTTCAGGTTGTATATCGGTCA GGTTAATTATGTGGTGGTTGATATCGACTCGATCGCCGGATGCACTGTGAGAGTGTTACATATCATAAATAAATGAAGTCTGGTGTTATGTT CATTACAAAAAA                                                                                                                                                                                  ]


>consensus_13542#0 AGCGTGAACGGCGTGAGTCCAACCTCCACGGCGGGGCAACAATGGCGAACGACAGCGATC CCCTCCTGAATCCCCCGGCTCCGGCGAGCAATCGCGGCAACGGCGGCGTGCGCCGCGTCC CGTGGGCGTCCCTGATCGGCTTCGTCGCCCTCGCCGTCAACTTCGCGCTCTGCATCTACC GCGCGGAAGGGGATCGCGGCGCGATCGCCTTCGTCACCTTCGCCTATCTCAACCTGCTGC TCCTCTTCTGGTGCATCCGCCAGTTCGATCAGGCGCCGCACGGATCGGCGGCGAGGGGCC GGATCAGGGTCGCCGTCTGGATCCTCGCCACATCGCTCACCGCCGTCTTTACCTGGAAGG TGGCCGCGCTGATGCCGCTCCCCGTCGCCGCCGTGGCGTGGGTCATGGCCGCGGCCACCG TGGTCGGTGGATTCTACGGCTTCTTCATCCATGAGGACAAGTGATCGATCCAGGATCGGA TGATCAAATCGCAAAATCGGAAAAGATTACTGCTCCATTGGGTCTACTGCTTTTATGGCT TCAGGTTGTATATCGGTCAGGTTAATTATGTGGTGGTTGATATCGACTCGATCGCCGGAT GCACTGTGAGAGTGTTACATATCATAAATAAATGAAGTCTGGTGTTATGTCATTACAAAA AAATTGGTAATGGGTCTACTTGTATATTTTGTGTGATCCCCGGCACAAAAAAAAAAAACC CAAGGGGGCCCGGACACATCCCATTTGTGACGTCACTACGTAATTTNTAACNTGAAAGGA ACCGGCTTCNCAATTCGCAAACTCCTTACGGGGATTAGAGCCAACNTCANCGCCAATGAG



consensusID : consensus_13542#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 785
fasta sequence
                              [GCAGAGACTAGACTTTTGACCACCGCGTGAGTCCAACCCTTCACGGCGAGGGAACCATGACGAAAACTAGCGATCCCCTCCTGAATCCCCCGGCGCCGGCGAGCAATCGCGGCAACGGCGGCGTGCGCCGGGTCCCGTGGGCGTCCCTGATCGGCTTCGTCGCCCTCGCCATCAACTTCGCGCTCTGCATCTACCGCGCGGAAGGGGATCGCGGCG-GATCGC-GTT-TGTCACCTTCGCCTATCTCAACCTGCTGCTCCTCTTCTGGTGCATCCGCCAGTTCGATCAGGCGCCGCACGGATCGGCGGCG-AGGGGCCGG-ATCAGGGCCGCCGTCTGGATCCTCGCCACATCGCTCACCGCCGTCTTTACATGGAAGGTGGCGGCGCTGATGCCGCTCCCCGTCGCCGCCGTGGCGTGGGTCATGGCCGCGGCCACCGTGGTCGGTGGATTCTACGGCTTCTTCATCCATGAGGACAAGTGATCGATCGATCCATGATCGGATGATCAAATCGCAAAATCGGAAAAGATTACTGCTCCATTGGGTCTACTGCTTTTATGGCTTCAGGTTGTATATCGGTCAGGTTAATTATGTGGTGGTTGATATCGACTCGATCGCCGGATGCACTGTGAGAGTGTTGCATATCATAAATAAATGAAGTCTGGTGCTATATGCATTACAACATGATTTGTTTGGTCTTACTTGTATATGTATGTGTTGATTTCACCTGGACATTTCAAGGTCTATCTCACATTTTCTCCTCGATTGCATTACAGGGGGAAAAAGTGCA]

[+] EMBL AK120956             [GCAGAGACTAGACTTTTGACCACCGCGTGAGTCCAACCCTTCACGGCGAGGGAACCATGACGAAAACTAGCGATCCCCTCCTGAATCCCCCGGCGCCGGCGAGCAATCGCGGCAACGGCGGCGTGCGCCGCGTCCCGTGGGCGTCCCTGATCGGCTTCGTCGCCCTCGCCATCAACTTCGCGCTCTGCATCTACCGCGCGGAAGGGGATCGCGGCGCGATCGC GTT TGTCACCTTCGCCTATCTCAACCTGCTGCTCCTCTTCTGGTGCATCCGCCAGTTCGATCAGGCGCCGCACGGATCGGCGGCG AGGGGCCGG ATCAGGGCCGCCGTCTGGATCCTCGCCACATCGCTCACCGCCGTCTTTACATGGAAGGTGGCGGCGCTGATGCCGCTCCCCGTCGCCGCCGTGGCGTGGGTCATGGCCGCGGCCACCGTGGTCGGTGGATTCTACGGCTTCTTCATCCATGAGGACAAGTGATCGATCGATCCATGATCGGATGATCAAATCGCAAAATCGGAAAAGATTACTGCTCCATTGGGTCTACTGCTTTTATGGCTTCAGGTTGTATATCGGTCAGGTTAATTATGTGGTGGTTGATATCGACTCGATCGCCGGATGCACTGTGAGAGTGTTGCATATCATAAATAAATGAAGTCTGGTGCTATATGCATTACAACATGATTTGTTTGGTCTTACTTGTATATGTATGTGTTGATTTCACCTGGACATTTCAAGGTCTATCTCACATTTTCTCCTCGATTGCATTACAGGGGGAAAAAGTGCA]
[+] EMBL C29173               [                  ACCACCGCGTGAGTCCAACCCTTCACGGCGAGGGAACCATGACGAAAACTAGCGATCCCCTCCTGAATCCCCCGGCGCCGGCNAGCAATCGCGGCAACGGCGGCGTGCG CGGNNCCCGTGGGCGTCCCTNATCGGCTTCGTCGCCCTCGCCATCAACTTCGCGCTCTGCATCTACCGCGCGGAAGGGGATCGCGGCG GATCGCTGTT TGTAACCTTCGCCTATCTCAACCTGCTGCTCCTCTTCTGGTGCATCCGCCAGTTCGATCAGGCGNCGCACGGNTCGGCGGCGAAGGGGCCGGAATCAGGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL OS1321675            [                                   ACCCTTCACGGCGAGGGAACCATGACGAAAACTAGCGATCCCCTCCTGAATCCCCCGNCGCCGGCGAGCAATCGCGGCAACGGCGGCGTGCG CGGATCCCGTGGGCGTCCCTGATCGGCTTCGTCGNCCTCGNCATCAACTTCGCGCTCTGCATCTACCGCGCGGAAGGGGATCGCGNCG GACCG  GTTNTGTCACCTTCGCCTATCTCAACCTGCTGCTCCTNTTCTGGTGCATCCGNCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL OSC092               [                                                                   TAGCGATCCCCTCCTGAATCCCCCGGCGCCGGCGAGCAATCGCGGCAACGGCGGCGTGCGCCCGTTCCCGTGGGCGTCCCTGATCGGCTTCGTCGCCCTCGCCATCAACTTCGCGCTCTGCATCTACCGCGCGGAAGGGGATCGCGGCG GATCGC GTT TGTCACCTTCGCCTATCTCAACCTGCTGCTCCTCTTCTGGTGCATCCGNCAGTTCGATCAGGCGCCGCACGGATCGGCGGCG AGGGGCCGG ATCAGGGCCGCCGTCTGGATCCTCGCCACATCGNTCACCGCCGTCTTTACATGGAAGGTGGCGGCGCTGATGCCGTTCCCCGTCGCCGCCGTGGCGTGGGTNATGGCCGCGG CAACGTGGTCGGTGGATTCTAAGGGTTNTTAAT CATGAGG CAAGT                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AU172410             [                                                                                                                                                                                                                                                        ACCTGCTGCTCCTCTTCTGGTGCATCCGCCAGTTCGATCAGGCGCCGCACGGATCGGCGGCG AGGGGCCGG ATCAGGGCCGCCGTCTGGATCCTCGCCACATCGCTCACCGCCGTCTTTACATGGAAGGTGGCGGCGCTGATGCCGCTCCCCGTCGCCGCCGTGGCGTGGGTCATGGCCGCGGCCACCGTGGTCGGTGGATTCTACGGCTTCTTCATCCATGAGGACAAGTGATCGATCGATCCATGATCGGATGATCAAATCGCAAAATCGGAAAAGATTACTGCTCCATTGGGTCTACTGCTTTTATGGCTTCAGGTTGTATATCGGTCAGGTTAATTATGTGGTGGTTGATATCGACTCGATCGCCGGATGCACTGTGAGAGTGTTGCATATCATAAATAAATGAAGTCTGGTGCTATATGCATTACAAaaaa                                                                                                        ]


>consensus_13542#1 GCAGAGACTAGACTTTTGACCACCGCGTGAGTCCAACCCTTCACGGCGAGGGAACCATGA CGAAAACTAGCGATCCCCTCCTGAATCCCCCGGCGCCGGCGAGCAATCGCGGCAACGGCG GCGTGCGCCGGGTCCCGTGGGCGTCCCTGATCGGCTTCGTCGCCCTCGCCATCAACTTCG CGCTCTGCATCTACCGCGCGGAAGGGGATCGCGGCGGATCGCGTTTGTCACCTTCGCCTA TCTCAACCTGCTGCTCCTCTTCTGGTGCATCCGCCAGTTCGATCAGGCGCCGCACGGATC GGCGGCGAGGGGCCGGATCAGGGCCGCCGTCTGGATCCTCGCCACATCGCTCACCGCCGT CTTTACATGGAAGGTGGCGGCGCTGATGCCGCTCCCCGTCGCCGCCGTGGCGTGGGTCAT GGCCGCGGCCACCGTGGTCGGTGGATTCTACGGCTTCTTCATCCATGAGGACAAGTGATC GATCGATCCATGATCGGATGATCAAATCGCAAAATCGGAAAAGATTACTGCTCCATTGGG TCTACTGCTTTTATGGCTTCAGGTTGTATATCGGTCAGGTTAATTATGTGGTGGTTGATA TCGACTCGATCGCCGGATGCACTGTGAGAGTGTTGCATATCATAAATAAATGAAGTCTGG TGCTATATGCATTACAACATGATTTGTTTGGTCTTACTTGTATATGTATGTGTTGATTTC ACCTGGACATTTCAAGGTCTATCTCACATTTTCTCCTCGATTGCATTACAGGGGGAAAAA GTGCA



consensusID : consensus_13542#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 401
fasta sequence
                              [ACGGCGAGGGAACCATGACGAAAACTAGCGATCCCCTCCTGAATCCCCCGGCGCCGGCGAGCAATCGCGGCAACGGCGGCGTGCGCCCGTCCCGTGGGCGTCCCTGATCGGCTTCGTCGCCCTCGCCATCAACTTCGCGCTCTGCATCTACCGCGCGGAAGGGGATCGCGGCGGATCGCGTTTGTNACCTTCGCCTATCTCAACCTGCTTGTTCTCTTCTGGTGCATCCGCAGTTCGATCAGGCGCCGACGGATCGGCGGCGAGGGGCCGGATCAAGGCCGCCGTTTTGATCCTCGGCANATCGTTAACCGCGTNTTTAAATGGAAGGTTGCGGCGTTGATGCCGTTCCCGTNGCGCGTGGTTGGGTAATGGCCNGGCACGTGTNGGGGATTTAAGGTTTT]

[+] EMBL C97281               [ACGGCGAGGGAACCATGACGAAAACTAGCGATCCCCTCCTGAATCCCCCGGCGCCGGCGAGCAATCGCGGCAACGGCGGCGTGCGCCCGTCCCGTGGGCGTCCCTGATCGGCTTCGTCGCCCTCGCCATCAACTTCGCGCTCTGCATCTACCGCGCGGAAGGGGATCGCGGCGGATCGCGTTTGTNACCTTCGCCTATCTCAACCTGCTTGTTCTCTTCTGGTGCATCCGCAGTTCGATCAGGCGCCGACGGATCGGCGGCGAGGGGCCGGATCAAGGCCGCCGTTTTGATCCTCGGCANATCGTTAACCGCGTNTTTAAATGGAAGGTTGCGGCGTTGATGCCGTTCCCGTNGCGCGTGGTTGGGTAATGGCCNGGCACGTGTNGGGGATTTAAGGTTTT]


>consensus_13542#2 ACGGCGAGGGAACCATGACGAAAACTAGCGATCCCCTCCTGAATCCCCCGGCGCCGGCGA GCAATCGCGGCAACGGCGGCGTGCGCCCGTCCCGTGGGCGTCCCTGATCGGCTTCGTCGC CCTCGCCATCAACTTCGCGCTCTGCATCTACCGCGCGGAAGGGGATCGCGGCGGATCGCG TTTGTNACCTTCGCCTATCTCAACCTGCTTGTTCTCTTCTGGTGCATCCGCAGTTCGATC AGGCGCCGACGGATCGGCGGCGAGGGGCCGGATCAAGGCCGCCGTTTTGATCCTCGGCAN ATCGTTAACCGCGTNTTTAAATGGAAGGTTGCGGCGTTGATGCCGTTCCCGTNGCGCGTG GTTGGGTAATGGCCNGGCACGTGTNGGGGATTTAAGGTTTT



consensusID : consensus_13542#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 319
fasta sequence
                              [CGTNTNTNTNGGANGCACCAGCGTGAGTCCAACCCTTCACGGCGAGGGAACCATGACGAAAACTAGCGATCCCCTCCTGAATCCCCCGGCGCCGGCGAGCAATCNGGCAGACGGCGGCGTGCGCATNCCGCGTGGGCGTCCCTGATCGGCTTCGTCGCCCTCGCCATCAACTTCGCGCTCTGCATCTACCGCGCGGAAGGGGATCGCGGCGANGNCGTNTTTGTCACCTTCGCCTATCTCAACCTGCTGCTCCTCTTCTGGTGCATCCGCCAGTTCGATCAGGCGCCGTACGGATCGGCGCATGTGTGGCNGAATCAGG]

[+] EMBL OSC929               [CGTNTNTNTNGGANGCACCAGCGTGAGTCCAACCCTTCACGGCGAGGGAACCATGACGAAAACTAGCGATCCCCTCCTGAATCCCCCGGCGCCGGCGAGCAATCNGGCAGACGGCGGCGTGCGCATNCCGCGTGGGCGTCCCTGATCGGCTTCGTCGCCCTCGCCATCAACTTCGCGCTCTGCATCTACCGCGCGGAAGGGGATCGCGGCGANGNCGTNTTTGTCACCTTCGCCTATCTCAACCTGCTGCTCCTCTTCTGGTGCATCCGCCAGTTCGATCAGGCGCCGTACGGATCGGCGCATGTGTGGCNGAATCAGG]


>consensus_13542#3 CGTNTNTNTNGGANGCACCAGCGTGAGTCCAACCCTTCACGGCGAGGGAACCATGACGAA AACTAGCGATCCCCTCCTGAATCCCCCGGCGCCGGCGAGCAATCNGGCAGACGGCGGCGT GCGCATNCCGCGTGGGCGTCCCTGATCGGCTTCGTCGCCCTCGCCATCAACTTCGCGCTC TGCATCTACCGCGCGGAAGGGGATCGCGGCGANGNCGTNTTTGTCACCTTCGCCTATCTC AACCTGCTGCTCCTCTTCTGGTGCATCCGCCAGTTCGATCAGGCGCCGTACGGATCGGCG CATGTGTGGCNGAATCAGG



consensusID : consensus_13542#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 170
fasta sequence
                              [CATTGGGTCTACTGCTTTTATGGCTTCAGGTTGTATATCGGTCAGGTTAATTATGTGGTGGTTGATATCGACTCGATCGCCGGATGCACTGTGAGAGTGTTGCATATCATAAATAAATGAAGTCTGGTGCTNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CF315866             [CATTGGGTCTACTGCTTTTATGGCTTCAGGTTGTATATCGGTCAGGTTAATTATGTGGTGGTTGATATCGACTCGATCGCCGGATGCACTGTGAGAGTGTTGCATATCATAAATAAATGAAGTCTGGTGCTNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_13542#4 CATTGGGTCTACTGCTTTTATGGCTTCAGGTTGTATATCGGTCAGGTTAATTATGTGGTG GTTGATATCGACTCGATCGCCGGATGCACTGTGAGAGTGTTGCATATCATAAATAAATGA AGTCTGGTGCTNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13542#2      ------------------------------------------ACGGCGAGGGAACCATGA 18
consensus_13542#3      ----CGTNTNTNTNGGANGCACCAGCGTGAGTCCAACCCTTCACGGCGAGGGAACCATGA 56
consensus_13542#1      GCAGAGACTAGACTTTTGACCACCGCGTGAGTCCAACCCTTCACGGCGAGGGAACCATGA 60
consensus_13542#0      --------------AGCGTGAACGGCGTGAGTCCAACC-TCCACGGCGGGGCAACAATGG 45
consensus_13542#4      ------------------------------------------------------------
                                                                                   

consensus_13542#2      CGAAAACTAGCGATCCCCTCCTGAATCCCCCGGCGCCGGCGAGCAATCGCGGCAACGGCG 78
consensus_13542#3      CGAAAACTAGCGATCCCCTCCTGAATCCCCCGGCGCCGGCGAGCAATCNGGCAGACGGCG 116
consensus_13542#1      CGAAAACTAGCGATCCCCTCCTGAATCCCCCGGCGCCGGCGAGCAATCGCGGCAACGGCG 120
consensus_13542#0      CGAACGACAGCGATCCCCTCCTGAATCCCCCGGCTCCGGCGAGCAATCGCGGCAACGGCG 105
consensus_13542#4      ------------------------------------------------------------
                                                                                   

consensus_13542#2      GCGTGCGCCCG-TCCCGTGGGCGTCCCTGATCGGCTTCGTCGCCCTCGCCATCAACTTCG 137
consensus_13542#3      GCGTGCGCATN-CCGCGTGGGCGTCCCTGATCGGCTTCGTCGCCCTCGCCATCAACTTCG 175
consensus_13542#1      GCGTGCGCCGGGTCCCGTGGGCGTCCCTGATCGGCTTCGTCGCCCTCGCCATCAACTTCG 180
consensus_13542#0      GCGTGCGCCGCGTCCCGTGGGCGTCCCTGATCGGCTTCGTCGCCCTCGCCGTCAACTTCG 165
consensus_13542#4      ----------------------------CATTGGGTCTACTGCTTTTAT----GGCTTCA 28
                                                    ** ** *     **  *         **** 

consensus_13542#2      CGCTCTGCATCTACCGCGCGGAAGGGGATCGCGGCG-GATCGCGTTTGTNACCTTCGCCT 196
consensus_13542#3      CGCTCTGCATCTACCGCGCGGAAGGGGATCGCGGCGANGNCGTNTTTGTCACCTTCGCCT 235
consensus_13542#1      CGCTCTGCATCTACCGCGCGGAAGGGGATCGCGGCG-GATCGCGTTTGTCACCTTCGCCT 239
consensus_13542#0      CGCTCTGCATCTACCGCGCGGAAGGGGATCGCGGCGCGATCGCCTTCGTCACCTTCGCCT 225
consensus_13542#4      GGTTGTATATCGGTC------AGGTTAATTATGTGGTGGTTGATATCGACTCGATCGCCG 82
                        * * *  ***   *      * *   **   *  *     *   * *   *  ***** 

consensus_13542#2      ATCTCAACCTGCTTGTTCTCTTCTGGTGCATCCGC-AGTTCGATCAGGCGCCG-ACGGAT 254
consensus_13542#3      ATCTCAACCTGCTGCTCCTCTTCTGGTGCATCCGCCAGTTCGATCAGGCGCCGTACGGAT 295
consensus_13542#1      ATCTCAACCTGCTGCTCCTCTTCTGGTGCATCCGCCAGTTCGATCAGGCGCCGCACGGAT 299
consensus_13542#0      ATCTCAACCTGCTGCTCCTCTTCTGGTGCATCCGCCAGTTCGATCAGGCGCCGCACGGAT 285
consensus_13542#4      GATGCACTGTGAGAGTG---TTGCATATCATAAATAAATGAAGTCTGGTGCTNAAAAAAA 139
                           **   **    *    **      ***     * *    ** ** **   *   * 

consensus_13542#2      CGGCG-GCGAGGGGCCGGATCAAGGCCGCCGTTTTGATCCTCGGCANATCGTTAACCGC- 312
consensus_13542#3      CGGCGCATGTGTGGCNGAATCAGG------------------------------------ 319
consensus_13542#1      CGGCG-GCGAGGGGCCGGATCAGGGCCGCCGTCTGGATCCTCGCCACATCGCTCACCGCC 358
consensus_13542#0      CGGCG-GCGAGGGGCCGGATCAGGGTCGCCGTCTGGATCCTCGCCACATCGCTCACCGCC 344
consensus_13542#4      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA----------------------------- 170
                                         *  *                                      

consensus_13542#2      GTNTTTAAATGGAAGGTTGCGGCGTTGATGCCGTTCCCGTNGCGCGTGGTTGGGTAATGG 372
consensus_13542#3      ------------------------------------------------------------
consensus_13542#1      GTCTTTACATGGAAGGTGGCGGCGCTGATGCCGCTCCCCGTCGCCGCCGTGGCGTGGGTC 418
consensus_13542#0      GTCTTTACCTGGAAGGTGGCCGCGCTGATGCCGCTCCCCGTCGCCGCCGTGGCGTGGGTC 404
consensus_13542#4      ------------------------------------------------------------
                                                                                   

consensus_13542#2      CCNGGCACGTGTNGGGGATTTAAGGTTTT------------------------------- 401
consensus_13542#3      ------------------------------------------------------------
consensus_13542#1      ATGGCCGCGGCCACCGTGGTCGGTGGATTCTACGGCTTCTTCATCCATGAGGACAAGTGA 478
consensus_13542#0      ATGGCCGCGGCCACCGTGGTCGGTGGATTCTACGGCTTCTTCATCCATGAGGACAAGTGA 464
consensus_13542#4      ------------------------------------------------------------
                                                                                   

consensus_13542#2      ------------------------------------------------------------
consensus_13542#3      ------------------------------------------------------------
consensus_13542#1      TCGATCGATCCATGATCGGATGATCAAATCGCAAAATCGGAAAAGATTACTGCTCCATTG 538
consensus_13542#0      TCGATCCAGGATCGGATGATCAAATCGCAAAATCGGAAAAGATTACTGCTCCATTGGGTC 524
consensus_13542#4      ------------------------------------------------------------
                                                                                   

consensus_13542#2      ------------------------------------------------------------
consensus_13542#3      ------------------------------------------------------------
consensus_13542#1      GGTCTACTGCTTTTATGGCTTCAGGTTGTATATCGGTCAGGTTAATTATGTGGTGGTTGA 598
consensus_13542#0      TACTGCTTTTATGGCTTCAGGTTGTATATCGGTCAGGTTAATTATGTGGTGGTTGATATC 584
consensus_13542#4      ------------------------------------------------------------
                                                                                   

consensus_13542#2      ------------------------------------------------------------
consensus_13542#3      ------------------------------------------------------------
consensus_13542#1      TATCGACTCGATCGCCGGATGCACTGTGAGAGTGTTGCATATCATAAATAAATGAAGTCT 658
consensus_13542#0      GACTCGATCGCCGGATGCACTGTGAGAGTGTTACATATCATAAATAAATGAAGTCTGGTG 644
consensus_13542#4      ------------------------------------------------------------
                                                                                   

consensus_13542#2      ------------------------------------------------------------
consensus_13542#3      ------------------------------------------------------------
consensus_13542#1      GGTGCTATATGCATTACAACATGATTTGTTTGGTCTTACTTGTATATGTATGTGTTGATT 718
consensus_13542#0      TTATGTCATTACAAAAAAATTGGTAATGGGTCTACTTGTATATTTTGTGTGATCCCCGGC 704
consensus_13542#4      ------------------------------------------------------------
                                                                                   

consensus_13542#2      ------------------------------------------------------------
consensus_13542#3      ------------------------------------------------------------
consensus_13542#1      TCACCTGGACATTTCAAGGTCTATCTCACATTTTCTCCTCGATTGCATTACAGGGGGAAA 778
consensus_13542#0      ACAAAAAAAAAAAACCCAAGGGGGCCCGGACACATCCCATTTGTGACGTCACTACGTAAT 764
consensus_13542#4      ------------------------------------------------------------
                                                                                   

consensus_13542#2      ------------------------------------------------------------
consensus_13542#3      ------------------------------------------------------------
consensus_13542#1      AAGTGCA----------------------------------------------------- 785
consensus_13542#0      TTNTAACNTGAAAGGAACCGGCTTCNCAATTCGCAAACTCCTTACGGGGATTAGAGCCAA 824
consensus_13542#4      ------------------------------------------------------------
                                                                                   

consensus_13542#2      ----------------
consensus_13542#3      ----------------
consensus_13542#1      ----------------
consensus_13542#0      CNTCANCGCCAATGAG 840
consensus_13542#4      ----------------
                                       




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)