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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13545#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 2233 fasta sequence
[GTAGTCTTCTCTTCTTCCACGCGCAGGCGCAGCCATCGTCGTCATCGCCATCGCCGCCGCGGCGCGCGCGCGCGCGCCCGTGACTGACTTCCGTAGGGGGGGACTGAGGCACGCCACCCCGCGCGCGCGCGCGCGCGCGTGCGGCCGCACAACCACGAACGCGCTCCGAAGTCTTCCTTCCGGGAGGGCACGTGTGGTTGGGGTATAAAGGGGGAGAGAGGCACGATGCCGCACGGCGTCGCGCTCGTCGTCGTCGTCGTCGTCGCTCCTGGCCGGTAGCGGATGGGCGTCGTGGTGGGGTTGCAGCTTGCTCGCCTCGCCCTCGCCCTCGCCGTCGCCGTCGCCCCCGGGTTGCTCAGCTTCTCCGCCGCCGCCACCGCAGCCTGAAGCGCGCGGGCGTCGAAACGAGGATGAGGGAGTACGGGCCCGCGGCGGCGCCGCGGCTGCTGGTGTCCGACTCCGGCCGCGTCCATGAGATGGAGAGGTTCTCGCATTACGTCGCTAGGCAAATTGGGTTTGACCATGTGGATGAATGCCCCCACCTATGTACGCTGGCCTATGATTATCTGAGGAAGAACAAGGGTTACGAAGAAAACATATTCGCGTTCTTCCAAAACAGCCAGGATCCCGAGACTCTGATTGTAAAGTTCATCGAGGAACTCGACAAATGTATACTTGGCTACTTCTCATTCCATTGGAACTATGCAACCTATATAATTTCCCAGGTTTTGACTGTAGAAGGTGCTCCTAAAAGAAAGCTCAGGAACATGGTATTAGAGGCCACTAGGAAACAGAGATTTGAAAGGGTTACAAGAAACTTGAAGGTGACCAGACTATTCTCCACATTGGTGGAGGAGCTGAAGGCCATAGGACTATCTTCCCATGTTGAAGCACCACGGAGTGATGTGATGGTCCCAGCAGCACATTGTGATCGCAGCCCAGTTCTACTCTTGATGGGTGGTGGGATGGGAGCTGGCAAGAGCACCGTGCTTAAGGATATACTCAAGGAAGCATTCTGGTCCGGAGCAGCTGCAAATGCAGTAGTTGTAGAGGCAGATGCATTCAAGGAAACTGATGTAATCTATCGAGCTATCAGCTCAAGAGGCCACCACAATGACATGCTGCAGACGGCAGAACTGGTACATCAGTCATCGATGGACGCAGCCTCGTCGCTCCTGGTGACTGCCCTCAACGAAGGGAGGGATGTGATCATGGACGGCACCATGTCGTGGGAGCCGTTTGTCCAGCAGACGATCACCATGGCCAGGGCTGTGCACCGGCAACGGTACCGCATGGGTGTTGGCTACAAGGTCACGGAGGACGGGTCAATCACTGAGGAGTACTGGGAGCCAGTTGAGGACTCCAGTACAGATGAAGAAGGCGAGACGAGAAACAGGAAGCCATATCGCATCGAGCTCGTAGGTGTGGTCTGTGATGCCTATCTTGCGGTTGTCAGGGGAATCAGGAGAGCTGTGATCACCGGGAGAGCAGTGAGGGTGAAGTCCCAGCTGAAGTCCCACAAGCGGTTCGCCACCGCGTTCCACAGCTACTGCAACCTCGTCGACAATGCGAGGCTCTACTGCACCAACTCCACGGGCGCCGCCAAGCTGATAGGATGGAAGGACGGCGAGAGCAACCTTCTAGTGGACCCTGAAGAAATCGGCTG-CTTGGAGAGGGTGAGCCACCTCAACGACGAGGCCGACTGCGTCCA-CGAGATCTATCCGGACGGCTCGGCGGCGGCGGCCTGGGAGGCCCTGGTCACGTCGCCGTCGAGGGCG-CCGGCGCA-GCGGGAGATCA-TG-GC-GGCGGTCCAGAGGA-GCGAGGCGCG-CTTCC-GGACCAC-GTCCAC-GCCCTC-GTAGCT-GCAGCACACGATCA-CTCGTGTCAGGT-TGGAATTTTCTTTTCTTTTGACA-CGATTTCAGGTAGGACTGGGGGTATTTGGGTG-TTGGTTGTGTGTGGTGGCTGCCAAATGGCTCGTGGGACA-CAGTTCGTGTTATGTACGTATCATACTGTACATTGTATCAACTGATCCTGACTCCGTTACCA-CCC-GGCATATTGTTTCGTTTTGCCGGGC-GATCGAGCTGCATCGAATGGAGCTCGTCGGAGTCATCGGGCATGTACACATGTGT-CTTGTACGATGTATTCCGGATCTAGA-CA-AGAAACAACACATACTTTTCATGGTCACTTCAGTGAAAGC-CCTGATGAAAAAAACTCAATGAC-CCTTCCCCTCGAAAAAAAAAAA]
[+] EMBL AK065638 [GTAGTCTTCTCTTCTTCCACGCGCAGGCGCAGCCATCGTCGTCATCGCCATCGCCGCCGCGGCGCGCGCGCGCGCGCCCGTGACTGACTTCCGTAGGGGGGGACTGAGGCACGCCACCCCGCGCGCGCGCGCGCGCGCGTGCGGCCGCACAACCACGAACGCGCTCCGAAGTCTTCCTTCCGGGAGGGCACGTGTGGTTGGGGTATAAAGGGGGAGAGAGGCACGATGCCGCACGGCGTCGCGCTCGTCGTCGTCGTCGTCGTCGCTCCTGGCCGGTAGCGGATGGGCGTCGTGGTGGGGTTGCAGCTTGCTCGCCTCGCCCTCGCCCTCGCCGTCGCCGTCGCCCCCGGGTTGCTCAGCTTCTCCGCCGCCGCCACCGCAGCCTGAAGCGCGCGGGCGTCGAAACGAGGATGAGGGAGTACGGGCCCGCGGCGGCGCCGCGGCTGCTGGTGTCCGACTCCGGCCGCGTCCATGAGATGGAGAGGTTCTCGCATTACGTCGCTAGGCAAATTGGGTTTGACCATGTGGATGAATGCCCCCACCTATGTACGCTGGCCTATGATTATCTGAGGAAGAACAAGGGTTACGAAGAAAACATATTCGCGTTCTTCCAAAACAGCCAGGATCCCGAGACTCTGATTGTAAAGTTCATCGAGGAACTCGACAAATGTATACTTGGCTACTTCTCATTCCATTGGAACTATGCAACCTATATAATTTCCCAGGTTTTGACTGTAGAAGGTGCTCCTAAAAGAAAGCTCAGGAACATGGTATTAGAGGCCACTAGGAAACAGAGATTTGAAAGGGTTACAAGAAACTTGAAGGTGACCAGACTATTCTCCACATTGGTGGAGGAGCTGAAGGCCATAGGACTATCTTCCCATGTTGAAGCACCACGGAGTGATGTGATGGTCCCAGCAGCACATTGTGATCGCAGCCCAGTTCTACTCTTGATGGGTGGTGGGATGGGAGCTGGCAAGAGCACCGTGCTTAAGGATATACTCAAGGAAGCATTCTGGTCCGGAGCAGCTGCAAATGCAGTAGTTGTAGAGGCAGATGCATTCAAGGAAACTGATGTAATCTATCGAGCTATCAGCTCAAGAGGCCACCACAATGACATGCTGCAGACGGCAGAACTGGTACATCAGTCATCGATGGACGCAGCCTCGTCGCTCCTGGTGACTGCCCTCAACGAAGGGAGGGATGTGATCATGGACGGCACCATGTCGTGGGAGCCGTTTGTCCAGCAGACGATCACCATGGCCAGGGCTGTGCACCGGCAACGGTACCGCATGGGTGTTGGCTACAAGGTCACGGAGGACGGGTCAATCACTGAGGAGTACTGGGAGCCAGTTGAGGACTCCAGTACAGATGAAGAAGGCGAGACGAGAAACAGGAAGCCATATCGCATCGAGCTCGTAGGTGTGGTCTGTGATGCCTATCTTGCGGTTGTCAGGGGAATCAGGAGAGCTGTGATCACCGGGAGAGCAGTGAGGGTGAAGTCCCAGCTGAAGTCCCACAAGCGGTTCGCCACCGCGTTCCACAGCTACTGCAACCTCGTCGACAATGCGAGGCTCTACTGCACCAACTCCACGGGCGCCGCCAAGCTGATAGGATGGAAGGACGGCGAGAGCAACCTTCTAGTGGACCCTGAAGAAATCGGCTG CTTGGAGAGGGTGAGCCACCTCAACGACGAGGCCGACTGCGTCCA CGAGATCTATCCGGACGGCTCGGCGGCGGCGGCCTGGGAGGCCCTGGTCACGTCGCCGTCGAGGGCG CCGGCGCA GCGGGAGATCA TG GC GGCGGTCCAGAGGA GCGAGGCGCG CTTCC GGACCAC GTCCAC GCCCTC GTAGCT GCAGCACACGATCA CTCGTGTCAGGT TGGAATTTTCTTTTCTTTTGACA CGATTTCAGGTAGGATTGGGGGTATTTGGGTG TTGGTTGTGTGTGGTGGCTGCCAAATGGCTCGTGGGACA CAGTTCGTGTTATGTACGTATCATACTGTACATTGTATCAACTGATCCTGACTCCGTTACCA CCC GGCATATTGTTTCGTTTTGCCGGGC GATCGAGCTGCATCGAATGGAGCTCGTCGGAGTCATCGGTCATGTACACATGTGT CTTGTACGATGTATTCCGGATCTAGA CA AGAAACAACACATACT ]
[-] EMBL CB629226 [ AAGAAGGCGAGACGAGAAACAGGAAGCCATATCGCATCGAGCTCGTAGGTGTGGTCTGTGATGCCTATCTTGCGGTTGTCAGGGGAATCAGGAGAGCTGTGATCACCGGGAGAGCAGTGAGGGTGAAGTCCCAGCTGAAGTCCCACAAGCGGTTCGCCACCGCGTTCCACAGCTACTGCAACCTCGTCGACAATGCGAGGCTCTACTGCACCAACTCCACGGGCGCCGCCAAGCTGATAGGATGGAAGGACGGCGAGAGCAACCTTCTAGTGGACCCTGAAGAAATCGGCTG CTTGGAGAGGGTGAGCCACCTCAACGACGAGGCCGACTGCGTCCA CGAGATCTATCCGGACGGCTCGGCGGCGGCGGCCTGGGAGGCCCTGGTCACGTCGCCGTCGAGGGCG CCGGCGCA GCGGGAGATCA TG GC GGCGGTCCAGAGGA GCGAGGCGCG CTTCC GGACCAC GTCCAC GCCCTC GTAGCT GCAGCACACGATCA CTCGTGTCAGGT TGGAATTCTCTTTTCTTTTGACA CGATTTCAGGTAGGACTGGGGGTATTTGGGTG TTGGTTGTGTGTGGTGGCTGCCAAATGGCTCGTGGGACA CAGTTCGTGTTATGTACGTATCATACTGTACATTGTATCAACTGATCCTGACTCCGTTACCA CCC GGCATATTGTTTCGTTTTGCCGGGC GATCGAGCTGCATCGAATGGAGCTCGTCGGAGTCATCGGGCATGTACACATGTGT CTTGTACGATGTATTCCGGATCTAGA CA AGAAACAACACATACTT ]
[-] EMBL CB679116 [ CAGGAGAGCTGTGATCACCGGACGAGCAGTGAGGGTGAAGTCCCAGCTGAAGTCCCACAAGCGGTTCGCCACCGCGTTCCACAGGTACTGCACCCTCGTCGACAATGCGAGGCTGTACTGCACCAACTCCACGGGCGCCGCCAAGCTGATAGGATGGAAGGACGGCGAGAGCAACCTTCTAGTGGACCCTGAAGAAATCGGCTG CTTGGAGAGGGTGAGCCACCTCATCGACGAGGCCGACTGCGTCCA CGAGATCTATCCGGACGGTTCGGCGGCGGCGGCCTGGGAGGCCCTGGTCCCGTCGCCGTCGAGGGCG CCGGCGCA GCGGGAGATCA TG GC GGCGGTCCAGAGGA GCGAGGCGCG CTTCC GGACCAC GTCCAC GCCCTC GTAGCT GCAGCACACGATCA CTCGTGTCAGGT CGGAATTTTCTTTTCTTTTGACA CGATTTCAGGTAGGATTGGGGGTATTTGGGTG TTGGTTGTGTGTGGTGGCTGCCAAATGGCTCGTGGGCCA CAGTTCGTGTTATGTACGTATCATACTGTACATTGTATCAAATGATCCTGACTCCGTTACCA CCC GGCATATTGTTTCGTTTTCCCGGGC GATCGAGCTGCATCGAATGGAGCTCGTCGGAGTCATCGGTCATGTACACATGTGT CTTGTACGATGTATTAAGGGTC ]
[-] EMBL CB683184 [ CACGGGCGCCGCCAAGCTGATAGGATGGAAGGACGGCGAGAGCAACCTTTTAGTGGACCCTGAAGAAATCGGCTG CTTGGAGAGGGTGAGCCACCTCAACGACGAGGCCGACTGCGTCCA CGAGATTTATCCGGACGGCTTGGCGGCGGCGGCCTGGGAGGCCCTGGTCACGTCGCCGTTGAGGGCG CCGGCGCA GCGGGAGATCA TG GC GGCGGTCCAGAGGA GCGAGGCGCG CTTCC GGACCAC GTCCAC GCCCTT GTAGGT GCAGCACACGATCA CTCGTGTCAGGT TGGAATTTTTTTTTCTTTTGACA CGATTTCAGGTAGGATTGGGGGTATTTGGGTG TTGGTTGTGTGTGGTGGCTGCCAAATGGCTCGTGGGACA CAGTTCGTGTTATGTACGTATCATACTGTACATTGTATCAACTGATCCTGACTCCGTTACCC CCC GGCATATTGTTTTGTTTTGCCGGGC GATCGAGCTGCATTGAATGGAGCTCGTCGGAGTCATCGGTCATGTACACATGTGT TTTGTACGATGTATTCCGGATTTAGA CA AGAAACAACCCATACTTTTCATGGTCCCTTCAaaggaa ]
[+] EMBL BQ908746 [ CGGCGAGAGCAACCTTCTAGTGGACCCTGAAGAAATCGGCTG CTTGGAGAGGGTGAGCCNCCTCAACGACGAGGCCGACTGCGTCCACCGAGATCTATCCGGACGGCTCGGCGGCGGCGGCCTGGGAGGCCCTGGTCACGTC CCGTCGAGGGCG CCGGCGCA CCGGGAGATCA TG GC GGCGGTCCAGAGGA GCGAGGCGCG CTTCC GGACCAC GTCCAC GCCCTC GTAGCT GCAGCACACGATCA CTCGTGTCAGGTGTGGAATTTTCTTTTCTTTTGACA CGATTTCAGGTAGGACTGGGGGTATTTGGGTG TTGGTTGTGTGTGGTGGCTGCCCAATGGCTCGTGGGACA CNGTTCGTGTTATGTACGTATCATACTGTACNTTGTATCAACTGATCCTGACTCCGTTACCC CCC GGCATATTGTTTCGTTTTGCCGGGC GATCGAGCTGCATCGAATGGAGCTCGTCGGAGTCATCGGGCATGTACACATGTGTCCTTGTACGATGTATTCCGGATCTAGA CA AGAAACAACACATACTTTTCATGGTCAaaaa ]
[+] EMBL BM419143 [ AAATCGCCTGCCTTGGAGAGGGTGA CCACCTCAACGACGA GCCGACTGCGTCCA CGAGATCTATCCGGACGGCTCGGC GCGGCGGCCTGGGAGGCCCTGGTCACGTCGCCGTCGAGGGCG CCGGCGCA GCGGGAGATCA TG GC GGCGGTCCAGAGGA GCGAGGCGCG CTTCC GGACCAC GTCCAC GCCCTC GTAGCT GCAGCACACGATCA CTCGTGTCAGGT TGGAATTTTCTTTTCTTTTGACA CGATTTCAGGTAGGACTGGGGGTATTTGGGTG TTGGTTGTGTGTGGTGGCTGCCAAATGGCTCGTGGGACA CAGTTCGTGTTATGTACGTATCATACTGTACCTTGTATCAACTGATCCTGACTCCGTTACCA CCC GGCATATTGTTTCGTTTTGCCGGGC GATCGAGCTGCATCGAATGGAGCTCGTCGGAGTCATCGGGCATGTACACATGTGT CTTGTACGATGTATTCCGGATCTAGACCA AGAAACAACCCATACTTTTCATGGTCAaaaaaaaaa ]
[+] EMBL BM419970 [ TCACGTCGCCGTCGAGGGCGTCCGGCGCA GCGGGAGATCA TG GCTGGCGGTCCAGAGGATGCGAGGCGCG CTTCCAGGACCAC GTCCACAGCCCTC GTAGCT GCAGCACACGATCA CTCGTGTCAGGT TGGAATTTTCTTTTCTTTTGACA CGATTTCAGGTAGGACTGGGGGTATTTGGGTGNTTGGTTGTGTGTGGTGGCTGCCAAATGGCTCGTGGGACA CAGTTCGTGTTATGTACGTATCATACTGTACATTGTATCAACTGATCCTGACTCCGTTACCA CCCTGGCATATTGTTTCGTTTTGCCGGGCAGATCGAGCTGCATCGAATGGAGCTCGTCGGAGTCATCGGGCATGTACACATGTGT CTTGTACGATGTATTCCGGATCTAGA CA AGAAACAACACATACTTTTCATGGTCACTTCAGTGAAAGCACCTGATGAAAAAAACTCAAa ]
[+] EMBL BM038592 [ CGA GGCC CCGGCNCA CGGGAGATCAGTG GC GCCGGTCCAGAGGA CGAGGCGCGTCTTCC GGACCACTGTCCAC GCCCTCTGTAGCTNNCAGCACNCGATCA CTCGTGTCAGGT TGGAATTTTCTTTTC TTTGACACCGATTTCAGGTAGGACTGGGGGTATTT GGTG TTGGTTGTGTGTGGTGTCTGCCCAATGGCTCGTGGGACN CAGTTCGTGTTATGTACGTATCATACTGTACATTGTATCAACTGATCCTGACTCCGTTACCACCCC GGCATATTGTTTCGTTTTGCCGGGC GATCGAGCTGCATCGAATGGAGCTCGTCGGAGTCATCGGGCATGTACACATGTGT CTTGTACGATGTATTCCGGATCTAGA CACAG AACCACACATACTTTTCATGGTCACTTCAGTGAAA C CCTGATGAAAAAAACTCAATGACACCTTCCCCTCGAAAAAAAAAAA]
[+] EMBL BM038626 [ c aCGGCTCANNCGGGAGATCA TGTGC GGCGGTCCAGAGGA GCGAGGCGCG CTTCC GGACCAC GTCCAC GCCCTC GTAGCT GCAGCACACGATCANCTCGTGTCAGGT TGGAATTTTCTTTTCTTTTGACN CGATTTCAGGTAGGACTGGGGGTATTTGGGTG TTGGTTGTGTGTGGTGGCTGCCCAATGGCTCGTGGGACACCAGTTCGTGTTATGTACGTATCATACTGTACATTGTATCAACTGATCCTGACTCCGTTACCACCCC GGCATATTGTTTCGTTTTGCCGGGC GATCGAGCTGCATCGAATGGAGCTCGTCGGAGTCATCGGGCATGTACACATGTGT CTTGTACGATGTATTCCGGATCTAGA CA AGAAACAACACATACTTTTCATGGTCACTTCAGTGAAAGC NCTGATGAAAAAAACTCAATGAC NCTTCCCNTCGAAAAAAAAAA ]
consensusID : consensus_13545#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 679 fasta sequence
[GCCATCGCCGCCGCGGCGCGCGCGCGCGCGCCCGTGACTGACTTCCGTAGGGGGGGACTTCAACTGAGGCACGCCACCCCGCGCGCGCGTGCGGCCGCACAGCCACGAACGCGCTCCGAAGTCTTCCTTCCGGGAGGGCACGTGTGGTTGGGGTATAAAGGGGGAGAGAGGCACGATGCCGCACGGCGTCGCGCTCGTCGTCGTCGTCGTCGTCGCTCCTGGCCGGTAGCGGATGGGCGTCGTGGTGGGGTTGCAGCTTGCTCGCCTCGCCCTCGCCCTCGCCCTCGCCCTCGCCGTCGCCGTCGCCGTCGCCCCCGGGTTGCTCAGCTTCTCCGCCGCCGCCACCGCAGCCTGAAGCGCGCGGGCGTCGAAACGAGGATGAGGGAGTACGGGCCCGCGGCGGCGCCGCGGCTGCTGGTGTCCGACTCCGGCCGCGTCCATGAGATGGAGAGGTTCTCGCATTACGTCGCTAGGCAAATTGGGTTTGACCATGTGGATGAATGCCCCCACCTATGTACGCTGGCCTATGATTATCTGAGGAAGAACAAGGGTTACGAAGAAAACATATTCGCGTTCTTCCAAAACAGCCAGGATCCCGAGACTCTGATTGTAAAGTTCATCGAGGAACTCGACAAATGTATACTTGGCTACTTCTCATTCCATTGGGACTATGCAACCT]
[+] EMBL CB629225 [GCCATCGCCGCCGCGGCGCGCGCGCGCGCGCCCGTGACTGACTTCCGTAGGGGGGGACTTCAACTGAGGCACGCCACCCCGCGCGCGCGTGCGGCCGCACAGCCACGAACGCGCTCCGAAGTCTTCCTTCCGGGAGGGCACGTGTGGTTGGGGTATAAAGGGGGAGAGAGGCACGATGCCGCACGGCGTCGCGCTCGTCGTCGTCGTCGTCGTCGCTCCTGGCCGGTAGCGGATGGGCGTCGTGGTGGGGTTGCAGCTTGCTCGCCTCGCCCTCGCCCTCGCCCTCGCCCTCGCCGTCGCCGTCGCCGTCGCCCCCGGGTTGCTCAGCTTCTCCGCCGCCGCCACCGCAGCCTGAAGCGCGCGGGCGTCGAAACGAGGATGAGGGAGTACGGGCCCGCGGCGGCGCCGCGGCTGCTGGTGTCCGACTCCGGCCGCGTCCATGAGATGGAGAGGTTCTCGCATTACGTCGCTAGGCAAATTGGGTTTGACCATGTGGATGAATGCCCCCACCTATGTACGCTGGCCTATGATTATCTGAGGAAGAACAAGGGTTACGAAGAAAACATATTCGCGTTCTTCCAAAACAGCCAGGATCCCGAGACTCTGATTGTAAAGTTCATCGAGGAACTCGACAAATGTATACTTGGCTACTTCTCATTCCATTGGGACTATGCAACCT]
consensusID : consensus_13545#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 649 fasta sequence
[GTCCCCTTTACTCCTGGCCGGTAGCGGATGGGCGTCGTGGTGGGGTTGCAGCTTGCTCGCCTCGCCCTCGCCCTCGCCGTCGCCGTCGCCCCCGGGTTGCTCAGCTTCTCCGCCGCCGCCACCGCAGCCTGAAGCGCGCGGGCGTCGAAACGAGGATGAGGGAGTACGGGCCCGCGGCGGCGCCGCGGCTGCTGGTGTCCGACTCCGGCCGCGTCCATGAGATGGAGAGGTTCTCGCATTACGTCGCTAGGCAAATTGGGTTTGACCATGTGGATGAATGCCCCCACCTATGTACGCTGGCCTATGATTATCTGAGGAAGAACAAGGGTTACGAAGAAAACATATTCGCGTTCTTCCAAAACAGCCAGGATCCCGAGACTCTGATTGTAAAGTTCATCGAGGAACTCGACAAATGTATACTTGGCTACTTCTCATTCCATTGGAACTATGCAACCTATATAATTTCCCAGGTTTTGACTGTAGAAGGTGCTCCTAAAAGAAAGCTCAGGAACATGGTATTAGAGGCCACTACGAAACAGAGATTTGAAAGGGTTACAAGAAACTTGAAGGTGACCAGACTATTCTCCACATTGGTGGAGGAGCTGAAGGCCATAGGACTATCTTCCCATGTTGAAGCACCACGGAGTGA]
[+] EMBL CB676604 [GTCCCCTTTACTCCTGGCCGGTAGCGGATGGGCGTCGTGGTGGGGTTGCAGCTTGCTCGCCTCGCCCTCGCCCTCGCCGTCGCCGTCGCCCCCGGGTTGCTCAGCTTCTCCGCCGCCGCCACCGCAGCCTGAAGCGCGCGGGCGTCGAAACGAGGATGAGGGAGTACGGGCCCGCGGCGGCGCCGCGGCTGCTGGTGTCCGACTCCGGCCGCGTCCATGAGATGGAGAGGTTCTCGCATTACGTCGCTAGGCAAATTGGGTTTGACCATGTGGATGAATGCCCCCACCTATGTACGCTGGCCTATGATTATCTGAGGAAGAACAAGGGTTACGAAGAAAACATATTCGCGTTCTTCCAAAACAGCCAGGATCCCGAGACTCTGATTGTAAAGTTCATCGAGGAACTCGACAAATGTATACTTGGCTACTTCTCATTCCATTGGAACTATGCAACCTATATAATTTCCCAGGTTTTGACTGTAGAAGGTGCTCCTAAAAGAAAGCTCAGGAACATGGTATTAGAGGCCACTACGAAACAGAGATTTGAAAGGGTTACAAGAAACTTGAAGGTGACCAGACTATTCTCCACATTGGTGGAGGAGCTGAAGGCCATAGGACTATCTTCCCATGTTGAAGCACCACGGAGTGA]
consensusID : consensus_13545#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 565 fasta sequence
[TTGGGAGGGGATAGAATGTTCNAGGGGTGGAATGTGTGATTTATGTTTTTTCACCTTGTCTTCTTTGTCGATTTCCTAGGCAAATTGGGTTTGACCATGTGGATGAATGCCCCCACCTATGTACGCTGGCCTATGATTATCTGAGGAAGAACAAGGGTTACAAAGAAAACATATTCGCGTTCTTCCAAAACAGCCAGGATCCCGAGACTCTGATTGTAAAGTTCATCGAGGAACTCGACAAATGTATACTTGGCTACTTCTCATTCCATTGGAACTATGCAACCTATATAATTTCCCAGGTTTTGACTGTAGAAGGTGCTCCTAAAAGAAAGCTCAGGAACATGGTATTAGAGGCCACTAGGAAACAGAGATTTGAAAGGGTTACAAGAAACTTGAAGGTGACCAGACTATTCTCCACATTGGTGGAGGAGCTGAAGGCCATAGGACTATCTTCCCATGTTGAAGCACCACGGAGTGATGTGATGGTCCCATCAGCACATTGTGATCGCAGCCCAGTTCTACTCTTGATGGGTGGTGGGATGGGATCTGGCAAGAGCACCGTGCT]
[+] EMBL CB683591 [TTGGGAGGGGATAGAATGTTCNAGGGGTGGAATGTGTGATTTATGTTTTTTCACCTTGTCTTCTTTGTCGATTTCCTAGGCAAATTGGGTTTGACCATGTGGATGAATGCCCCCACCTATGTACGCTGGCCTATGATTATCTGAGGAAGAACAAGGGTTACAAAGAAAACATATTCGCGTTCTTCCAAAACAGCCAGGATCCCGAGACTCTGATTGTAAAGTTCATCGAGGAACTCGACAAATGTATACTTGGCTACTTCTCATTCCATTGGAACTATGCAACCTATATAATTTCCCAGGTTTTGACTGTAGAAGGTGCTCCTAAAAGAAAGCTCAGGAACATGGTATTAGAGGCCACTAGGAAACAGAGATTTGAAAGGGTTACAAGAAACTTGAAGGTGACCAGACTATTCTCCACATTGGTGGAGGAGCTGAAGGCCATAGGACTATCTTCCCATGTTGAAGCACCACGGAGTGATGTGATGGTCCCATCAGCACATTGTGATCGCAGCCCAGTTCTACTCTTGATGGGTGGTGGGATGGGATCTGGCAAGAGCACCGTGCT]
consensusID : consensus_13545#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 175 fasta sequence
[GGCGCAACTGCAGCTGAAACGCTGCNGGGCGTTAAACGAGGATGAGGGAGTACGTGGCCCGCGGCGACGCCGCGGCTGCTGGTGTCCGAACTCCCGGCGCGTCCATGANATGGNAGAGTGTTCTCGCATTAACGTCGGTACATTTGAATTGCAAGAACTCAATTCCACTCCACGA]
[+] EMBL BM422152 [GGCGCAACTGCAGCTGAAACGCTGCNGGGCGTTAAACGAGGATGAGGGAGTACGTGGCCCGCGGCGACGCCGCGGCTGCTGGTGTCCGAACTCCCGGCGCGTCCATGANATGGNAGAGTGTTCTCGCATTAACGTCGGTACATTTGAATTGCAAGAACTCAATTCCACTCCACGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13545#0 GTAGTCTTCTCTTCTTCCACGCGCAGGCGCAGCCATCGTCGTCATCGCCATCGCCGCCGC 60
consensus_13545#3 ------------------------------------------------------------
consensus_13545#2 ------------------------------------------------------------
consensus_13545#1 ------------------------------------------------------------
consensus_13545#4 ------------------------------------------------------------
consensus_13545#0 GGCGCGCGCGCGCGCGCCCGTGACTGACTTCCGTAGGGGGGGACTGAGGCACGCCACCCC 120
consensus_13545#3 ------------------------------------------------------------
consensus_13545#2 ------------------------------------------------------------
consensus_13545#1 ------------------------------------------------------------
consensus_13545#4 ------------------------------------------------------------
consensus_13545#0 GCGCGCGCGCGCGCGCGCGTGCGGCCGCACAACCACGAACGCGCTCCGAAGTCTTCCTTC 180
consensus_13545#3 ------------------------------------------------------------
consensus_13545#2 ------------------------------------------------------------
consensus_13545#1 ------------------------------------------------------------
consensus_13545#4 ------------------------------------------------------------
consensus_13545#0 CGGGAGGGCACGTGTGGTTGGGGTATAAAGGGGGAGAGAGGCACGATGCCGCACGGCGTC 240
consensus_13545#3 ------------------------------------------------------------
consensus_13545#2 ------------------------------------------------------------
consensus_13545#1 ------------------------------------------------------------
consensus_13545#4 ------------------------------------------------------------
consensus_13545#0 GCGCTCGTCGTCGTCGTCGTCGTCGCTCCTGGCCGGTAGCGGATGGGCGTCGTGGTGGGG 300
consensus_13545#3 ------------------------------------------------------------
consensus_13545#2 ---------------GTCCCCTTTACTCCTGGCCGGTAGCGGATGGGCGTCGTGGTGGGG 45
consensus_13545#1 ------------------------------------------------------------
consensus_13545#4 ------------------------------------------------------------
consensus_13545#0 TTGCAGCTTGCTCGCCTCGCCCTCGCCCTCGCCGTCGCCGTCGCCCCCGGGTTGCTCAGC 360
consensus_13545#3 ------------------------------------------------------------
consensus_13545#2 TTGCAGCTTGCTCGCCTCGCCCTCGCCCTCGCCGTCGCCGTCGCCCCCGGGTTGCTCAGC 105
consensus_13545#1 ------------------------------------------------------------
consensus_13545#4 ------------------------------------------------------------
consensus_13545#0 TTCTCCGCCGCCGCCACCGCAGCCTGAAGCGCGCGGGCGTCGAAACGAGGATGAGGGAGT 420
consensus_13545#3 ---------------------------------------------TTGGGAGGGGATAGA 15
consensus_13545#2 TTCTCCGCCGCCGCCACCGCAGCCTGAAGCGCGCGGGCGTCGAAACGAGGATGAGGGAGT 165
consensus_13545#1 ------------------------------------------------------------
consensus_13545#4 ------------------------------------------------------------
consensus_13545#0 ACGGGCCCGCGGCGGCGC-CGCGGCTGCTGGTGTCCGACTCCGGCCGCGTCCATGAGATG 479
consensus_13545#3 ATGTTCNAGGGGTGGAATGTGTGATTTATGTTTTTTCACCTTGTC--------------- 60
consensus_13545#2 ACGGGCCCGCGGCGGCGC-CGCGGCTGCTGGTGTCCGACTCCGGCCGCGTCCATGAGATG 224
consensus_13545#1 -----------------------GCCATCGCCGCCGCGGCGCGCGCGCGCGCGCCCGTGA 37
consensus_13545#4 ------------------------------------------------------------
consensus_13545#0 GAGAGGTTCTCGCATTACGTCGCTAGGCAAATTGGGTTTGACCATGTGGATGAATGCCCC 539
consensus_13545#3 ------TTCTT-TGTCGATTTCCTAGGCAAATTGGGTTTGACCATGTGGATGAATGCCCC 113
consensus_13545#2 GAGAGGTTCTCGCATTACGTCGCTAGGCAAATTGGGTTTGACCATGTGGATGAATGCCCC 284
consensus_13545#1 CTGACTTCCGTAGGGGGGGACTTCAACTGAGGCACGCCACCCCGCGCGCGCGTGCGGCCG 97
consensus_13545#4 ------------------------------------------------------------
consensus_13545#0 CACCTATGTACGCTGGCCTATGA---TTATCTGAGGAAGAACAAGGGTTACGAAGAAAAC 596
consensus_13545#3 CACCTATGTACGCTGGCCTATGA---TTATCTGAGGAAGAACAAGGGTTACAAAGAAAAC 170
consensus_13545#2 CACCTATGTACGCTGGCCTATGA---TTATCTGAGGAAGAACAAGGGTTACGAAGAAAAC 341
consensus_13545#1 CACAGCCACGAACGCGCTCCGAAGTCTTCCTTCCGGGAGGGCACGTGTGGTTGGGGTATA 157
consensus_13545#4 ------------------------------------------------------------
consensus_13545#0 ATATTCGCGTTCTTCCAAAACAGCCAGGATCCCGAGACTCTGATTGTAAAGTTCATCGAG 656
consensus_13545#3 ATATTCGCGTTCTTCCAAAACAGCCAGGATCCCGAGACTCTGATTGTAAAGTTCATCGAG 230
consensus_13545#2 ATATTCGCGTTCTTCCAAAACAGCCAGGATCCCGAGACTCTGATTGTAAAGTTCATCGAG 401
consensus_13545#1 AAGGGGGAGAGAGGCACGATGCCGCACGGCGTCGCGCTCGTCGTCGTCGTCGTCGTCGCT 217
consensus_13545#4 ------------------------------------------------------------
consensus_13545#0 GAACTCGACAAATGTATACTTGGCTACTTCTCATTCCATTGGAACTATGCAACCTATATA 716
consensus_13545#3 GAACTCGACAAATGTATACTTGGCTACTTCTCATTCCATTGGAACTATGCAACCTATATA 290
consensus_13545#2 GAACTCGACAAATGTATACTTGGCTACTTCTCATTCCATTGGAACTATGCAACCTATATA 461
consensus_13545#1 CCTGGCCGGTAGCGGATGGGCGTCGTGGTGGGGTTGCAGCTTGCTCGCCTCGCCCTCGCC 277
consensus_13545#4 ------------------------------------------------------------
consensus_13545#0 ATTTCCCAGGTTTTGACTGTAGAAGGTGCTCCTAAAAGAAAGCTCAGGAACATGGTATTA 776
consensus_13545#3 ATTTCCCAGGTTTTGACTGTAGAAGGTGCTCCTAAAAGAAAGCTCAGGAACATGGTATTA 350
consensus_13545#2 ATTTCCCAGGTTTTGACTGTAGAAGGTGCTCCTAAAAGAAAGCTCAGGAACATGGTATTA 521
consensus_13545#1 CTCGCCCTCGCCCTCGCCGTCGCCGTCGCCGTCGCCCCCGGGTTGCTCAGCTTCTCCGCC 337
consensus_13545#4 ------------------------------------------------------------
consensus_13545#0 GAGGCCACTAGGAAACAGAGATTTGAAAGGGTTACAAGAAACTTGAAGGTGACCAGACTA 836
consensus_13545#3 GAGGCCACTAGGAAACAGAGATTTGAAAGGGTTACAAGAAACTTGAAGGTGACCAGACTA 410
consensus_13545#2 GAGGCCACTACGAAACAGAGATTTGAAAGGGTTACAAGAAACTTGAAGGTGACCAGACTA 581
consensus_13545#1 GCCGCCACCGCAGCCTGAAGCGC-GCGGGCGTCGAAACGAGGATGAGGG-----AGTACG 391
consensus_13545#4 GGCGCAACTGCAGC-TGAAACGCTGCNGGGCGTTAAACGAGGATGAGGG-----AGTACG 54
* ** ** * * * ** * *** ** **
consensus_13545#0 TTCTCCACATTGGTGGAGGAGCTGAAGGCCATAGGACTATCTTCCCATGTTGAAGCACCA 896
consensus_13545#3 TTCTCCACATTGGTGGAGGAGCTGAAGGCCATAGGACTATCTTCCCATGTTGAAGCACCA 470
consensus_13545#2 TTCTCCACATTGGTGGAGGAGCTGAAGGCCATAGGACTATCTTCCCATGTTGAAGCACCA 641
consensus_13545#1 -GGCCCGCGGCGGCGCCGCGGCTGCTGGTGTCCGA-CTCCGGCCGCGT-CCATGAGATGG 448
consensus_13545#4 TGGCCCGCGGCGACGCCGCGGCTGCTGGTGTCCGAACTCCCGGCGCGT-CCATGANATGG 113
** * * * * **** ** * ** * * * *
consensus_13545#0 CGGAGTGATGTGATGGTCCCAGCA----GCACATTGTGATCGC-----AGCCCAGTTCTA 947
consensus_13545#3 CGGAGTGATGTGATGGTCCCATCA----GCACATTGTGATCGC-----AGCCCAGTTCTA 521
consensus_13545#2 CGGAGTGA---------------------------------------------------- 649
consensus_13545#1 AGAGGT--TCTCGCATTA-CGTCGCTAGGCAAATTGGGTTTGACCATGTGGATGAATGCC 505
consensus_13545#4 NAGAGTGTTCTCGCATTAACGTCG----GTACATTTGAATTG--CAAGAACTCAATTCCA 167
**
consensus_13545#0 CTCT-TGATGGGTGGTGGGATGGGAGCTGGCAAGAGCACCGTGCTTAAGGATATACTCAA 1006
consensus_13545#3 CTCT-TGATGGGTGGTGGGATGGGATCTGGCAAGAGCACCGTGCT--------------- 565
consensus_13545#2 ------------------------------------------------------------
consensus_13545#1 CCCACCTATGTACGCTGGCCTATGATTATCTGAGGAAGAACAAGGGTTACGAAGAAAACA 565
consensus_13545#4 CTCCACGA---------------------------------------------------- 175
consensus_13545#0 GGAAGCATTCTGGTCCGGAGCAGCTGCAAATGCAGTAGTTGTAGAGGCAGATGCATTCAA 1066
consensus_13545#3 ------------------------------------------------------------
consensus_13545#2 ------------------------------------------------------------
consensus_13545#1 TATTCGCGTTCTTCCAAAACAGCCAGGATCCCGAGACTCTGATTGTAAAGTTCATCGAGG 625
consensus_13545#4 ------------------------------------------------------------
consensus_13545#0 GGAAACTGATGTAATCTATCGAGCTATCAGCTCAAGAGGCCACCACAATGACATGCTGCA 1126
consensus_13545#3 ------------------------------------------------------------
consensus_13545#2 ------------------------------------------------------------
consensus_13545#1 AACTCGACAAATGTATACTTGGCTACTTCTCATTCCATTGGGACTATGCAACCT------ 679
consensus_13545#4 ------------------------------------------------------------
consensus_13545#0 GACGGCAGAACTGGTACATCAGTCATCGATGGACGCAGCCTCGTCGCTCCTGGTGACTGC 1186
consensus_13545#3 ------------------------------------------------------------
consensus_13545#2 ------------------------------------------------------------
consensus_13545#1 ------------------------------------------------------------
consensus_13545#4 ------------------------------------------------------------
consensus_13545#0 CCTCAACGAAGGGAGGGATGTGATCATGGACGGCACCATGTCGTGGGAGCCGTTTGTCCA 1246
consensus_13545#3 ------------------------------------------------------------
consensus_13545#2 ------------------------------------------------------------
consensus_13545#1 ------------------------------------------------------------
consensus_13545#4 ------------------------------------------------------------
consensus_13545#0 GCAGACGATCACCATGGCCAGGGCTGTGCACCGGCAACGGTACCGCATGGGTGTTGGCTA 1306
consensus_13545#3 ------------------------------------------------------------
consensus_13545#2 ------------------------------------------------------------
consensus_13545#1 ------------------------------------------------------------
consensus_13545#4 ------------------------------------------------------------
consensus_13545#0 CAAGGTCACGGAGGACGGGTCAATCACTGAGGAGTACTGGGAGCCAGTTGAGGACTCCAG 1366
consensus_13545#3 ------------------------------------------------------------
consensus_13545#2 ------------------------------------------------------------
consensus_13545#1 ------------------------------------------------------------
consensus_13545#4 ------------------------------------------------------------
consensus_13545#0 TACAGATGAAGAAGGCGAGACGAGAAACAGGAAGCCATATCGCATCGAGCTCGTAGGTGT 1426
consensus_13545#3 ------------------------------------------------------------
consensus_13545#2 ------------------------------------------------------------
consensus_13545#1 ------------------------------------------------------------
consensus_13545#4 ------------------------------------------------------------
consensus_13545#0 GGTCTGTGATGCCTATCTTGCGGTTGTCAGGGGAATCAGGAGAGCTGTGATCACCGGGAG 1486
consensus_13545#3 ------------------------------------------------------------
consensus_13545#2 ------------------------------------------------------------
consensus_13545#1 ------------------------------------------------------------
consensus_13545#4 ------------------------------------------------------------
consensus_13545#0 AGCAGTGAGGGTGAAGTCCCAGCTGAAGTCCCACAAGCGGTTCGCCACCGCGTTCCACAG 1546
consensus_13545#3 ------------------------------------------------------------
consensus_13545#2 ------------------------------------------------------------
consensus_13545#1 ------------------------------------------------------------
consensus_13545#4 ------------------------------------------------------------
consensus_13545#0 CTACTGCAACCTCGTCGACAATGCGAGGCTCTACTGCACCAACTCCACGGGCGCCGCCAA 1606
consensus_13545#3 ------------------------------------------------------------
consensus_13545#2 ------------------------------------------------------------
consensus_13545#1 ------------------------------------------------------------
consensus_13545#4 ------------------------------------------------------------
consensus_13545#0 GCTGATAGGATGGAAGGACGGCGAGAGCAACCTTCTAGTGGACCCTGAAGAAATCGGCTG 1666
consensus_13545#3 ------------------------------------------------------------
consensus_13545#2 ------------------------------------------------------------
consensus_13545#1 ------------------------------------------------------------
consensus_13545#4 ------------------------------------------------------------
consensus_13545#0 CTTGGAGAGGGTGAGCCACCTCAACGACGAGGCCGACTGCGTCCACGAGATCTATCCGGA 1726
consensus_13545#3 ------------------------------------------------------------
consensus_13545#2 ------------------------------------------------------------
consensus_13545#1 ------------------------------------------------------------
consensus_13545#4 ------------------------------------------------------------
consensus_13545#0 CGGCTCGGCGGCGGCGGCCTGGGAGGCCCTGGTCACGTCGCCGTCGAGGGCGCCGGCGCA 1786
consensus_13545#3 ------------------------------------------------------------
consensus_13545#2 ------------------------------------------------------------
consensus_13545#1 ------------------------------------------------------------
consensus_13545#4 ------------------------------------------------------------
consensus_13545#0 GCGGGAGATCATGGCGGCGGTCCAGAGGAGCGAGGCGCGCTTCCGGACCACGTCCACGCC 1846
consensus_13545#3 ------------------------------------------------------------
consensus_13545#2 ------------------------------------------------------------
consensus_13545#1 ------------------------------------------------------------
consensus_13545#4 ------------------------------------------------------------
consensus_13545#0 CTCGTAGCTGCAGCACACGATCACTCGTGTCAGGTTGGAATTTTCTTTTCTTTTGACACG 1906
consensus_13545#3 ------------------------------------------------------------
consensus_13545#2 ------------------------------------------------------------
consensus_13545#1 ------------------------------------------------------------
consensus_13545#4 ------------------------------------------------------------
consensus_13545#0 ATTTCAGGTAGGACTGGGGGTATTTGGGTGTTGGTTGTGTGTGGTGGCTGCCAAATGGCT 1966
consensus_13545#3 ------------------------------------------------------------
consensus_13545#2 ------------------------------------------------------------
consensus_13545#1 ------------------------------------------------------------
consensus_13545#4 ------------------------------------------------------------
consensus_13545#0 CGTGGGACACAGTTCGTGTTATGTACGTATCATACTGTACATTGTATCAACTGATCCTGA 2026
consensus_13545#3 ------------------------------------------------------------
consensus_13545#2 ------------------------------------------------------------
consensus_13545#1 ------------------------------------------------------------
consensus_13545#4 ------------------------------------------------------------
consensus_13545#0 CTCCGTTACCACCCGGCATATTGTTTCGTTTTGCCGGGCGATCGAGCTGCATCGAATGGA 2086
consensus_13545#3 ------------------------------------------------------------
consensus_13545#2 ------------------------------------------------------------
consensus_13545#1 ------------------------------------------------------------
consensus_13545#4 ------------------------------------------------------------
consensus_13545#0 GCTCGTCGGAGTCATCGGGCATGTACACATGTGTCTTGTACGATGTATTCCGGATCTAGA 2146
consensus_13545#3 ------------------------------------------------------------
consensus_13545#2 ------------------------------------------------------------
consensus_13545#1 ------------------------------------------------------------
consensus_13545#4 ------------------------------------------------------------
consensus_13545#0 CAAGAAACAACACATACTTTTCATGGTCACTTCAGTGAAAGCCCTGATGAAAAAAACTCA 2206
consensus_13545#3 ------------------------------------------------------------
consensus_13545#2 ------------------------------------------------------------
consensus_13545#1 ------------------------------------------------------------
consensus_13545#4 ------------------------------------------------------------
consensus_13545#0 ATGACCCTTCCCCTCGAAAAAAAAAAA 2233
consensus_13545#3 ---------------------------
consensus_13545#2 ---------------------------
consensus_13545#1 ---------------------------
consensus_13545#4 ---------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||