These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13551#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1612 fasta sequence [GAAATGATATCCATTTCCCACCCTCCTAATCCCATTAGCCATACGCAGCCCGAGTGTCTTCCCCTTCCCTTTGTGGCGTAAAAGAAAGAAAATCTCCCGTCTCCTCCGCTCCTTGCGCCGCCAAGACGAGTCGCGGCTGAACAGGGGAGGGGCGGCGATCTCCATCTGGCGAGCAGAGCAGGCGAGAGGATTATGTTCTCGTTTCTCCTACCCTACAGGATGTTTAGATAATTCGAGACCCTAGCTTTGAACTTTGAGTAGGTTCAGTTCTTAGCTGTAGAAGATGAATGGTTCAAGTGGCTCCCAAGGACATAATGTCAATGGAGGACAGAAGAAAGTGCAGCATGCTAGCCCACTCACTCTGAACAATGGGTCAAAGCACCGTCCATTGACTCCCATGAGACGATGCCGCGGTGTAGCATGTGTGGTGATCATACTGTCAACAGCATTCACATTGATAGTTTTCATAGCCCCTATTACTACTTTCCTTGTTCGGCTAGTCAGCGTGCATTACAGTAGAAAGGCGACCTCTGTTCTGTTTGGAATGTGGCTATCTTTATGGCCATTCTTGTTTGAGAAGATCAACAAGACCAATGTGGTTTTCTCTGGTGAAAGTGTACTTCCAAAAAAGCGTGTCTTGTTATTTGCCAACCACAGGACTGAGGTTGACTGGATGTATTTGTGGGATCTTGCATTGAGGAAAGGCTATTTAGGATATATCAAGTACATCCTTAAGAGCAGCTTGATGAAATTGCCTGTTTTTAGCT-GGGCATTTCACATTTTTGAGTTTATCCCAGTAGAACGGAAATGGGAGATTGATG-AAGCAATTATCCAGAACAAACTGTCAGCATTTAAGGACCCCAGAGACCCCCTCTGGTTGGCCGTTTTCCCTGAGGGCACTGATTATACTGAGAAGAAATGCATCAAGAGTCAAGAATATGCTTCGGAGCATGGTCTGCCTATACTTAAAAATGTTCTTCTTCCAAAGACAAAGGGGTTCCTTTGCTGTTTGCAAGAGTTGAAGAGCTCCCTAGATGCAGTTTATGATGTCACAATAGCGTATAAGCATCGCCTGCCAGATTTTCTGGATATTATATATGGCACCGATCCTTCTGAAGTCCACATCCACATCAGAACTGTTAAGCTCTGTGACATTCCAACGTCAGAAGATGAAGTAACCGATTGGATGATAGAGAGGTTCAGGCAGAAGGACCAGCTTCTGTCAGATTTTTTCATGCAAGGCCACTTCCCTGATGAAGGAACTGAAGGGGATGTATCCACACCGGAGTGCCTTGCTAATTTCATTGCAATAGTCAGCTCGACAGGCTTCTTCTTGTACCTATCTCTTTTTTCGTCTGTGTGGTTCAAGGTCTATGTATTATTAAGCTGCGCTTACCTTACATTTGTTACCTATTTCTCCATTCAACCACCCCAACTGATATGCTCATCAGAGGGTGGAACCCATGCCAAAAAGGTACTGTAGAAAGAGGCTGTAGCTTTGACTGGAAACTGTATATCTGCAAAAGATATTTACTGTAGAAACCCTTGGCTTGTGCAATTAAAATCGTTCCTCTTTTGTTTTACTTCTGCAAGATGATTTAGTAAAAAAAAA] [+] EMBL AK103516 [GAAATGATATCCATTTCCCACCCTCCTAATCCCATTAGCCATACGCAGCCCGAGTGTCTTCCCCTTCCCTTTGTGGCGTAAAAGAAAGAAAATCTCCCGTCTCCTCCGCTCCTTGCGCCGCCAAGACGAGTCGCGGCTGAACAGGGGAGGGGCGGCGATCTCCATCTGGCGAGCAGAGCAGGCGAGAGGATTGTGTTCTCGTTTCTCCTACCCTACAGGATGTTTAGATAATTCGAGACCCTAGCTTTGAACTTTGAGTAGGTTCAGTTCTTAGCTGTAGAAGATGAATGGTTCAAGTGGCTCCCAAGGACATAATGTCAATGGAGGACAGAAGAAAGTGCAGCATGCTAGCCCACTCACTCTGAACAATGGGTCAAAGCACCGTCCATTGACTCCCATGAGACGATGCCGCGGTGTAGCATGTGTGGTGATCATACTGTCAACAGCATTCACATTGATAGTTTTCATAGCCCCTATTACTACTTTCCTTGTTCGGCTAGTCAGCGTGCATTACAGTAGAAAGGCGACCTCTGTTCTGTTTGGAATGTGGCTATCTTTATGGCCATTCTTGTTTGAGAAGATCAACAAGACCAATGTGGTTTTCTCTGGTGAAAGTGTACTTCCAAAAAAGCGTGTCTTGTTATTTGCCAACCACAGGACTGAGGTTGACTGGATGTATTTGTGGGATCTTGCATTGAGGAAAGGCTATTTAGGATATATCAAGTACATCCTTAAGAGCAGCTTGATGAAATTGCCTGTTTTTAGCT GGGCATTTCACATTTTTGAGTTTATCCCAGTAGAACGGAAATGGGAGATTGATG AAGCAATTATCCAGAACAAACTGTCAGCATTTAAGGACCCCAGAGACCCCCTCTGGTTGGCCGTTTTCCCTGAGGGCACTGATTATACTGAGAAGAAATGCATCAAGAGTCAAGAATATGCTTCGGAGCATGGTCTGCCTATACTTAAAAATGTTCTTCTTCCAAAGACAAAGGGGTTCCTTTGCTGTTTGCAAGAGTTGAAGAGCTCCCTAGATGCAGTTTATGATGTCACAATAGCGTATAAGCATCGCCTGCCAGATTTTCTGGATATTATATATGGCACCGATCCTTCTGAAGTCCACATCCACATCAGAACTGTTAAGCTCTGTGACATTCCAACGTCAGAAGATGAAGTAACCGATTGGATGATAGAGAGGTTCAGGCAGAAGGACCAGCTTCTGTCAGATTTTTTCATGCAAGGCCACTTCCCTGATGAAGGAACTGAAGGGGATGTATCCACACCGGAGTGCCTTGCTAATTTCATTGCAATAGTCAGCTCGACAGGCTTCTTCTTGTACCTATCTCTTTTTTCGTCTGTGTGGTTCAAGGTCTATGTATTATTAAGCTGCGCTTACCTTACATTTGTTACCTATTTCTCCATTCAACCACCCCAACTGATATGCTCATCAGAGGGTGGAACCCATGCCAAAAAGGTACTGTAGAAAGAGGCTGTAGCTTTGACTGGAAACTGTATATCTGCAAAAGATATTTACTGTAGAAACCCTTGGCTTGTGCAATT ] [+] EMBL CB683465 [ CCACCCTCCTAATCCCATTAGCCATACGCAGCCCGAGTGTCTTCCCCTTCCCTTTGTGGCGTAAAAGAAAGAAAATCTCCCGTCTCCTCCGCTCCTTGCGCCGCCAAGACGAGTCGCGGCTGAACAGGGGAGGGGCGGCGATCTCCATCTGGCGAGCAGAGCAGGCGAGAGGATTATGTTCTCGTTTCTCCTACCCTACAGGATGTTTAGATAATTCGAGACCCTAGCTTTGAACTTTGAGTAGGTTCAGTTCTTAGCTGTAGAAGATGAATGGTTCAAGTGGCTCCCAAGGACATAATGTCAATGGAGGACAGAAGAAAGTGCAGCATGCTAGCCCACTCACTCTGAACAATGGGTCAAAGCACCGTCCATTGACTCCCATGAGACGATGCCGCGGTGTAGCATGTGTGGTGATCATACTGTCAACAGCATTCACATTGATAGTTTTCATAGCCCCTATTACTACTTTCCTTGTTCGGCTAGTCAGCGTGCATTACAGTAGAAAGGCGACCTCTGTTCTGTTTGGAATGTGGCTATCTTTATGGCCATTCTTGTTTGAGAAGATCAACAAGACCAATGTGGTTTTCTCTGGTGAAAGTGTACTTCCAAAAAAGCGTGTCTTGTTATTTGCCAACCACAGGACTGAGGTTGACTGGATGTATTTGTGGGATCTTGCATTGAGGAAAGGCTATTTAGGATATATCAAGTACATCCTTAAGAGCAGCTTGATGAAATTGCCTGTTTTTAGCT GGGCATTTCACATTTTTGAGTTTATCCCAGTAGAACGGAAATGGGAGATTGATGAAAGCATTTAT CAGA ] [+] EMBL CB681740 [ ACCCTCCTAATCCCATTAGCCATACGCAGCCCGAGTGTCTTCCCCTTCCCTTTGTGGCGTAAAAGAAAGAAAATCTCCCGTCTCCTCCGCTCCTTGCGCCGCCAAGACGAGTCGCGGCTGAACAGGGGAGGGGCGGCGATCTCCATCTGGCGAGCAGAGCAGGCGAGAGGATTATGTTCTCGTTTCTCCTACCCTACAGGATGTTTAGATAATTCGAGACCCTAGCTTTGAACTTTGAGTAGGTTCAGTTCTTAGCTGTAGAAGATGAATGGTTCAAGTGGCTCCCAAGGACATAATGTCAATGGAGGACAGAAGAAAGTGCAGCATGCTAGCCCACTCACTCTGAACAATGGGTCAAAGCACCGTCCATTGACTCCCATGAGACGATGCCGCGGTGTAGCATGTGTGGTGATCATACTGTCAACAGCATTCACATTGATAGTTTTCATAGCCCCTATTACTACTTTCCTTGTTCGGCTAGTCAGCGTGCATTACAGTAGAAAGGCGACCTCTGTTCTGTTTGGAATGTGGCTATCTTTATGGCCATTCTTGTTTGAGAAGATCAACAAGACCAATGTGGTTTTCTCTGGTGAAAGTGTACTTCCAAAAAAGCGTGTCTTGTTATTTGCCAACCACAGGACTGAGGTTGACTGGATGTATTTGTGGGATCTTGCATTGAGGAAAGGCTATTTAGGATATATCAAGTACATCCTTAAGAGCAGCTTGATGAAATTGCCTGTTTTTAGCT GGGCATTTCACATTTTT ] [-] EMBL CB681741 [ AAATTGCCTGTTTTTAGCTGGGGCATTTCACATTTTTGAGTTTATCCCAGTAGAACGGAAATGGGAGATTGATG AAGCAATTATCCAGAACAAACTGTCAGCATTTAAGGACCCCAGAGACCCCCTCTGGTTGGCCGTTTTCCCTGAGGGCACTGATTATACTGAGAAGAAATGCATCAAGAGTCAAGAATATGCTTCGGAGCATGGTCTGCCTATACTTAAAAATGTTCTTCTTCCAAAGACAAAGGGGTTCCTTTGCTGTTTGCAAGAGTTGAAGAGCTCCCTAGATGCAGTTTATGATGTCACAATAGCGTATAAGCATCGCCTGCCAGATTTTCTGGATATTATATATGGCACCGATCCTTCTGAAGTCCACATCCACATCAGAACTGTTAAGCTCTGTGACATTCCAACGTCAGAAGATGAAGTAACCGATTGGATGATAGAGAGGTTCAGGCAGAAGGACCAGCTTCTGTCAGATTTTTTCATGCAAGGCCACTTCCCTGATGAAGGAACTGAAGGGGATGTATCCACACCGGAGTGCCTTGCTAATTTCATTGCAATAGTCAGCTCGACAGGCTTCTTCTTGTACCTATCTCTTTTTTCGTCTGTGTGGTTCAAGGTCTATGTATTATTAAGCTGCGCTTACCTTACATTTGTTACCTATTTCTCCATTCAACCACCCCAACTGATATGCTCATCAGAGGGTGGAACCCATGCCAAAAAGGTACTGTAGAAAGAGGCTGTAGCTTTGACTGGAGGCTGTATATCTGCAAAAGATATTTACTGTAGAAAaaaaaga ] [-] EMBL CB683852 [ CT GGGCATTTCACATTTTTGAGTTTATCCCAGTAGAACGGAAATGGGAGATTGATG AAGCAATTATCCAGAACAAACTGTCAGCATTTAAGGACCCCAGAGACCCCCTCTGGTTGGCCGTTTTCCCTGAGGGCACTGATTATACTGAGAAGAAATGCATCAAGAGTCAAGAATATGCTTCGGAGCATGGTCTGCCTATACTTAAAAATGTTCTTCTTCCAAAGACAAAGGGGTTCCTTTGCTGTTTGCAAGAGTTGAAGAGCTCCCTAGATGCAGTTTATGATGTCACAATAGCGTATAAGCATCGCCTGCCAGATTTTCTGGATATTATATATGGCACCGATCCTTCTGAAGTCCACATCCACATCAGAACTGTTAAGCTCTGTGACATTCCAACGTCAGAAGATGAAGTAACCGATTGGATGATAGAGAGGTTCAGGCAGAAGGACCAGCTTCTGTCAGATTTTTTCATGCAAGGCCACTTCCCTGATGAAGGAACTGAAGGGGATGTATCCACACCGGAGTGCCTTGCTAATTTCATTGCAATAGTCAGCTCGACAGGCTTCTTCTTGTACCTATCTCTTTTTTCGTCTGTGTGGTTCAAGGTCTATGTATTATTAAGCTGCGCTTACCTTACATTTGTTACCTATTTCTCCATTCAACCACCCCAACTGATATGCTCATCAGAGGGTGGAACCCATGCCAAAAAGGTACTGTAGAAAGAGGCTGTAGCTTTGACTGGAGACTGTATATCTGCAAAAGATATTTACTGTAGAAAtttaaaga ] [-] EMBL CF278192 [ TGAAGAGCTCCCTAGATGCAGTTTATGATGTCACAATAGCGTATAAGCATCGCCTGCCAGATTTTCTGGATATTATATATGGCACCGATCCTTCTGAAGTCCACATCCACATCAGAACTGTTAAGCTCTGTGACATTCCAACGTCAGAAGATGAAGTAACCGATTGGATGATAGAGAGGTTCAGGCAGAAGGACCAGCTTCTGTCAGATTTTTTCATGCAAGGCCACTTCCCTGATGAAGGAACTGAAGGGGATGTATCCACACCGGAGTGCCTTGCTAATTTCATTGCAATAGTCAGCTCGACAGGCTTCTTCTTGTACCTATCTCTTTTTTCGTAAG GAGGTACAAGGTCTATGTATTATTAAGATGCGCTTACCTTACATTTAAAACCTATTTCTCCATTCAACCACCCCAACTGATATGCTCATCAGAGGGTGGAACCCATGCCAAAAAGGTACTGTAGAAAGAGGCTGTAGCTTTGACTGGAAACTGTATATCTGCAAAAGATATTTACTGTAAAAACCCTTGGCTTGTGCAAAAAAA ] [-] EMBL CF318815 [ CACATCAGAACTGTTAAGCTCTGTGACATTCCAACGTCAGAAGATGAAGTAACCGATTGGATGATAGAGAGGTTCAGGCAGAAGGACCAGCTTCTGTCA TTTTTTTCATGCAAGGCCACTTCCCTGATGAAGGAACTGAAGGGGATGTATCCACACCGGAGTGCCTTGCTAATTTCATTGCAATAGTCAGCTCGACAGGCTTCTTCTTGTACCTATCTCTTTTTTCGTCTGTGTGGTTCAAGGTCTATGTATTATTAAGCTGCGCTTACCTTACATTTGTTACCTATTTCTCCATTCAACCACCCCAACTGATATGCTCATCAGAGGGTGGAACCCATGCCAAAAAGGTACTGTAGAAAGAGGCTGTAGCTTTGACTGGAAACTGTATATCTGCAAAAGATATTTACTGTAGAAACCCTTGGCTTGTGCAATTGTCATCGTTCCTCTTTTGTTTTACTTCTGCAAGATGATTTAGTAAAAAAAAA] consensusID : consensus_13551#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1094 fasta sequence [AAAGGCTTGCGGTGGATACCTAGGTACCCAGAGACGAGGAAGGGCGTAGCAAGCGACGAAATGCTTCGGGGAGTTGAAAATAAGCATAGATCCGGAGATTCCCAAATAGGTCAACCTTTTGAACTGCCTGCTGAATCCATGAGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGTAGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAGCCTAAACCGTGAAAACGGGGTTGTGGGAGAGCAATACAAGCGTCTAATCCCATTAGCCATACGCAGCCCGAGTGTCTTCCCCTTCCCTTTGTGGCGTAAAAGAAAGAAAATCTCCCGTCTCCTCCGCTCCTTGCGCCGCCAAGACGAGTCGCGGCTGAACAGGGGAGGGGCGGCGATCTCCATCTGGCGAGCAGAGCAGGCGAGAGGATTATGTGAGAAGAAATGCATCAAGAGTCAAGAATATGCTTCGGAGCATGGTCTGCCTATACTTAAAAATGTTCTTCTTCCAAAGACAAAGGGGTTCCTTTGCTGTTTGCAAGAGTTGAAGAGCTCCCTAGATGCAGTTTATGATGTCACAATAGCGTATAAGCATCGCCTGCCAGATTTTCTGGATATTATATATGGCACCGATCCTTCTGAAGTCCACATCCACATCAGAACTGTTAAGCTCTGTGACATTCCAACGTCAGAAGATGAAGTAACCGATTGGATGATAGAGAGGTTCAGGCAGAAGGACCAGCTTCTGTCAGATTTTTTCATGCAAGGCCACTTCCCTGATGAAGGAACTGAAGGGGATGTATCCACACCGGAGTGCCTTGCTAATTTCATTGCAATAGTCAGCTCGACAGGCTTCTTCTTGTACCTATCTCTTTTTTCGTCTGTGTGGTTCAAGGTCTATGTATTATTAAGCTGCGCTTACCTTACATTTGTTACCTATTTCTCCATTCAACCACCCCAACTGATATGCTCATCAGAGGGTGGAACCCATGCCAAAAAGGTACTGTAGAAAGAGGCTGTAGCTTTGACTGGAAACTGTATATCTGCAAAAGATATTTTCTGTAGAAAAAAAAAA] [+] EMBL AK104484 [AAAGGCTTGCGGTGGATACCTAGGTACCCAGAGACGAGGAAGGGCGTAGCAAGCGACGAAATGCTTCGGGGAGTTGAAAATAAGCATAGATCCGGAGATTCCCAAATAGGTCAACCTTTTGAACTGCCTGCTGAATCCATGAGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGTAGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAGCCTAAACCGTGAAAACGGGGTTGTGGGAGAGCAATACAAGCGTCTAATCCCATTAGCCATACGCAGCCCGAGTGTCTTCCCCTTCCCTTTGTGGCGTAAAAGAAAGAAAATCTCCCGTCTCCTCCGCTCCTTGCGCCGCCAAGACGAGTCGCGGCTGAACAGGGGAGGGGCGGCGATCTCCATCTGGCGAGCAGAGCAGGCGAGAGGATTATGTGAGAAGAAATGCATCAAGAGTCAAGAATATGCTTCGGAGCATGGTCTGCCTATACTTAAAAATGTTCTTCTTCCAAAGACAAAGGGGTTCCTTTGCTGTTTGCAAGAGTTGAAGAGCTCCCTAGATGCAGTTTATGATGTCACAATAGCGTATAAGCATCGCCTGCCAGATTTTCTGGATATTATATATGGCACCGATCCTTCTGAAGTCCACATCCACATCAGAACTGTTAAGCTCTGTGACATTCCAACGTCAGAAGATGAAGTAACCGATTGGATGATAGAGAGGTTCAGGCAGAAGGACCAGCTTCTGTCAGATTTTTTCATGCAAGGCCACTTCCCTGATGAAGGAACTGAAGGGGATGTATCCACACCGGAGTGCCTTGCTAATTTCATTGCAATAGTCAGCTCGACAGGCTTCTTCTTGTACCTATCTCTTTTTTCGTCTGTGTGGTTCAAGGTCTATGTATTATTAAGCTGCGCTTACCTTACATTTGTTACCTATTTCTCCATTCAACCACCCCAACTGATATGCTCATCAGAGGGTGGAACCCATGCCAAAAAGGTACTGTAGAAAGAGGCTGTAGCTTTGACTGGAAACTGTATATCTGCAAAAGA ] [+] EMBL AK060870 [AAAGGCTTGCGGTGGATACCTAGGTACCCAGAGACGAGGAAGGGCGTAGCAAGCGACGAAATGCTTCGGGGAGTTGAAAATAAGCATAGATCCGGAGATTCCCAAATAGGTCAACCTTTTGAACTGCCTGCTGAATCCATGAGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGTAGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAGCCTAAACCGTGAAAACGGGGTTGTGGGAGAGCAATACAAGCGTCTAATCCCATTAGCCATACGCAGCCCGAGTGTCTTCCCCTTCCCTTTGTGGCGTAAAAGAAAGAAAATCTCCCGTCTCCTCCGCTCCTTGCGCCGCCAAGACGAGTCGCGGCTGAACAGGGGAGGGGCGGCGATCTCCATCTGGCGAGCAGAGCAGGCGAGAGGATTATGTGAGAAGAAATGCATCAAGAGTCAAGAATATGCTTCGGAGCATGGTCTGCCTATACTTAAAAATGTTCTTCTTCCAAAGACAAAGGGGTTCCTTTGCTGTTTGCAAGAGTTGAAGAGCTCCCTAGATGCAGTTTATGATGTCACAATAGCGTATAAGCATCGCCTGCCAGATTTTCTGGATATTATATATGGCACCGATCCTTCTGAAGTCCACATCCACATCAGAACTGTTAAGCTCTGTGACATTCCAACGTCAGAAGATGAAGTAACCGATTGGATGATAGAGAGGTTCAGGCAGAAGGACCAGCTTCTGTCAGATTTTTTCATGCAAGGCCACTTCCCTGATGAAGGAACTGAAGGGGATGTATCCACACCGGAGTGCCTTGCTAATTTCATTGCAATAGTCAGCTCGACAGGCTTCTTCTTGTACCTATCTCTTTTTTCGTCTGTGTGGTTCAAGGTCTATGTATTATTAAGCTGCGCTTACCTTACATTTGTTACCTATTTCTCCATTCAACCACCCCAACTGATATGCTCATCAGAGGGTGGAACCCATGCCAAAAAGGTACTGTAGAAAGAGGCTGTAGCTTTGACTGGAAACTGTATATCTGCAAAAGA ] [+] EMBL CA762908 [ CTTCCCTTTGTGGCGTAAAAGAAAGAAAATCTCCCGTCTCCTCCGCTCCTTGCGCCGCCAAGACGAGTCGCGGCTGAACAGGGGAGGGGCGGCGATCTCCATCTGGCGAGCAGAGCAGGCGAGAGGATTATGTGAGAAGAAATGCATCAAGAGTCAAGAATATGCTTCGGAGCATGGTCTGCCTATACTTAAAAATGTTCTTCTTCCAAAGACAAAGGGGTTCCTTTGCTGTTTGCAAGAGTTGAAGAGCTCCCTAGATGCAGTTTATGATGTCACAATAGCGTATAAGCATCGCCTGCCAGATTTTCTGGATGTTATATATGGCACCGATCCTTCTGAAGTCCACATCCACATCAGAACTGTTAAGCTCTGTGACATTCCAACGTCAGAAGATGAAGTAACCGATTGGATGATAGAGAGGTTCAGGCAGAAGGACCAGCTTCTGTCAGATTTTTTCATGCAAGGCCACTTCCCTGATGAAGGAACTGAAGGGGATGTATCCACACCGGAGTGCCTTGCTAATTTCATTGCAATAGTCAGCTCGACATGCTTCTTCTTGTACCTATCTCTTTTTTCGTCTGTGTGGTTCAAGGTCTATGTATTATTAAGCTGCGCTTACCTTACATTTGTTACCTATTTCTCCATTCAACCACCCCAACTGATATGCTCATCAGAGGGTGGAACCCATGCCAAAAAGGTACTGTAGAAAGAGGCTGTAGCTTTGACTGGAAACTGTATATCTGCAAAAGATATTTTCTGTAGAAAAAAAAAA] [-] EMBL BI305434 [ CGAGCAGAGCAGGCGAGAGGATTATGTGAGAAGAAATGCATCAAGAGTCAAGAATATGCTTCGGAGCATGGTCTGCCTATACTTAAAAATGTTCTTCTTCCAAAGACAAAGGGGTTCCTTTGCTGTTTGCAAGAGTTGAAGAGCTCCCTAGATGCAGTTTATGATGTCACAATAGCGTATAAGCATCGCCTGCCAGATTTTCTGGATATTATATATGGCACCGATCCTTCTGAAGTCCACATCCACATCAGAACTGTTAAGCTCTGTGACATTCCAACGTCAGAAGATGAAGTAACCGATTGGATGATAGAGAGGTTCAGGCAGAAGGACCAGCTTCTGTCAGATTTTTTCATGCAAGGCCACTTCCCTGATGAAGGAACTGAAGGGGATGTATCCACACCGGAGTGCCTTGCTAATTTCATTGCAATAGTCAGCTCGACAGGCTTCTTCTTGTACCTATCTCTTTTTTCGTCTGTGTGGTTCAAGGTCTATGTATTATTAAGCTGCGCTTACCTTACATTTGTTACCTATTTCTCCATTCAACCACCCCAACTGATATGCTCATCAGAGGGTGGAACCCATGCCAAAAAGGTACTGTAGAAAGAGGCTGTAGCTTTGACTGGAAACTGTATATCTGCAAAAGATATTTACTGTAGAAAccctt ] consensusID : consensus_13551#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 611 fasta sequence [TGGACTGAGGAGTGAAAAATCCCTTAGCCTACGCGGCCCGAGTGTCTTCCCCTTCCCTTTGTGGCGTAAAAGAAAGAAAATCTCCCGTCTCCTCCGCTCCTTGCGCCGCCAAGACGAGTCGCGGCTGAACAGGGGAGGGGCGGCGATCTCCATCTGGCGAGCAGAGCAGGCGAGAGGATTATGTGAGAAGAAATGCATCAAGAGTCAAGAATATGCTTCGGAGCATGGTCTGCCTATACTTAAAAATGTTCTTCTTCCAAAGACAAAGGGGTTCCTTTGCTGTTTGCAAGAGTTGAAGAGCTCCCTAGATGCAGTTTATGATGTCACAATAGCGTATAAGCATCGCCTGCCAGATTTTCTGGATATTATATATGGCACCGATCCTTCTGAAGTCCACATCCACATCAGAACTGTTAAGCTCTGTGACATTCCAACGTCAGAAGATGAAGTAACCGATTGGATGATGNAGAGGTTCAGGCAGAAGGACCAGCTTCTGTCATTTTTTTCATGCAAGGCCACTTCCCTGATGAAGGAACTGAAGGGGGATGTATCCACACCGGGAGTGCCTTGCTAATTTCATTGCAATAGTCAGCTCGACAGGCTTCTTCTTG] [+] EMBL CF318816 [TGGACTGAGGAGTGAAAAATCCCTTAGCCTACGCGGCCCGAGTGTCTTCCCCTTCCCTTTGTGGCGTAAAAGAAAGAAAATCTCCCGTCTCCTCCGCTCCTTGCGCCGCCAAGACGAGTCGCGGCTGAACAGGGGAGGGGCGGCGATCTCCATCTGGCGAGCAGAGCAGGCGAGAGGATTATGTGAGAAGAAATGCATCAAGAGTCAAGAATATGCTTCGGAGCATGGTCTGCCTATACTTAAAAATGTTCTTCTTCCAAAGACAAAGGGGTTCCTTTGCTGTTTGCAAGAGTTGAAGAGCTCCCTAGATGCAGTTTATGATGTCACAATAGCGTATAAGCATCGCCTGCCAGATTTTCTGGATATTATATATGGCACCGATCCTTCTGAAGTCCACATCCACATCAGAACTGTTAAGCTCTGTGACATTCCAACGTCAGAAGATGAAGTAACCGATTGGATGATGNAGAGGTTCAGGCAGAAGGACCAGCTTCTGTCATTTTTTTCATGCAAGGCCACTTCCCTGATGAAGGAACTGAAGGGGGATGTATCCACACCGGGAGTGCCTTGCTAATTTCATTGCAATAGTCAGCTCGACAGGCTTCTTCTTG] consensusID : consensus_13551#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 566 fasta sequence [TTCTGTTTGGAATGTGGCTATCTTTATGGCCATTCTTGTTTGAGAAGATCAACAAGACCAATGTGGTTTTCTCTGGTGAAAGTGTACTTCCAAAAAAGCGTGTCTTGTTATTTGCCAACCACAGGACTGAGGTTGACTGGATGTATTTGTGGGATCTTGCATTGAGGAAAGGCTATTTAGGATATATCAAGTACATCCTTAAGAGCAGCTTGATGAAATTGCCTGTTTTTAGCTGGGCATTTCACATTTTTGAGTTTATCCCAGTAGAACGGAAATGGGAGATTGATGAAGCAATTATCCAGAACAAACTGTCAGCATTTAAGGACCCCAGAGACCCCCTCTGGTTGGCCGTTTTCCCTGAGGGCACTGATTATACGTAAGGCATATTTATCTTTAGAATTCATTAATATATTTTTAGTATGATCCACCTGCACTATCAGAATTTATATTCTTAATCACATATCTGTCGAACTTTCTAAGTTTTCAAATATACTGAACGCATTTTCCCCTGTCAATACTGCCTTTGAGAAACGGTTTCTCATTCTATTGAGTTATTGCCTATGTAT] [+] EMBL CF307351 [TTCTGTTTGGAATGTGGCTATCTTTATGGCCATTCTTGTTTGAGAAGATCAACAAGACCAATGTGGTTTTCTCTGGTGAAAGTGTACTTCCAAAAAAGCGTGTCTTGTTATTTGCCAACCACAGGACTGAGGTTGACTGGATGTATTTGTGGGATCTTGCATTGAGGAAAGGCTATTTAGGATATATCAAGTACATCCTTAAGAGCAGCTTGATGAAATTGCCTGTTTTTAGCTGGGCATTTCACATTTTTGAGTTTATCCCAGTAGAACGGAAATGGGAGATTGATGAAGCAATTATCCAGAACAAACTGTCAGCATTTAAGGACCCCAGAGACCCCCTCTGGTTGGCCGTTTTCCCTGAGGGCACTGATTATACGTAAGGCATATTTATCTTTAGAATTCATTAATATATTTTTAGTATGATCCACCTGCACTATCAGAATTTATATTCTTAATCACATATCTGTCGAACTTTCTAAGTTTTCAAATATACTGAACGCATTTTCCCCTGTCAATACTGCCTTTGAGAAACGGTTTCTCATTCTATTGAGTTATTGCCTATGTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13551#0 GAAATGATATCCATTTCCCACCCTCCTAATCCCATTAGCCATACGCAGCCCGAGTGTCTT 60 consensus_13551#3 ------------------------------------------------------------ consensus_13551#1 ------------------------------------------------------------ consensus_13551#2 ------------------------------------------------------------ consensus_13551#0 CCCCTTCCCTTTGTGGCGTAAAAGAAAGAAAATCTCCCGTCTCCTCCGCTCCTTGCGCCG 120 consensus_13551#3 ------------------------------------------------------------ consensus_13551#1 ------------------------------------------------------------ consensus_13551#2 ------------------------------------------------------------ consensus_13551#0 CCAAGACGAGTCGCGGCTGAACAGGGGAGGGGCGGCGATCTCCATCTGGCGAGCAGAGCA 180 consensus_13551#3 ------------------------------------------------------------ consensus_13551#1 ------------------------------------------------------------ consensus_13551#2 ------------------------------------------------------------ consensus_13551#0 GGCGAGAGGATTATGTTCTCGTTTCTCCTACCCTACAGGATGTTTAGATAATTCGAGACC 240 consensus_13551#3 ------------------------------------------------------------ consensus_13551#1 ------------------------------------------------------------ consensus_13551#2 ------------------------------------------------------------ consensus_13551#0 CTAGCTTTGAACTTTGAGTAGGTTCAGTTCTTAGCTGTAGAAGATGAATGGTTCAAGTGG 300 consensus_13551#3 ------------------------------------------------------------ consensus_13551#1 -----AAAGGCTTGCGGTGGATACCTAGGTACCCAGAGACGAGGAAGGGCGTAGCAAGCG 55 consensus_13551#2 ------------------------------------------------------------ consensus_13551#0 CTCCCAAGGACATAATGTCAATGGAGGACAGAAGAAAGTGCAGCATGCTAGCCCACTCAC 360 consensus_13551#3 ------------------------------------------------------------ consensus_13551#1 ACGAAATGCTTCGGGGAGTTGAAAATAAGCATAGATCCGGAGATTCCCAAATAGGTCAAC 115 consensus_13551#2 ------------------------------------------------------------ consensus_13551#0 TCTGAACAATGGGTCAAAGCACCGTCCATTGACTCCCATGAGACGATGCCGCGGTGTAGC 420 consensus_13551#3 ------------------------------------------------------------ consensus_13551#1 CTTTTGAACTGCCTGCTGAATCCATGAGCAGGCAAGAGACAACCTGGCGAACTGAAACAT 175 consensus_13551#2 ------------------------------------------------------------ consensus_13551#0 ATGTGTGGTGATCATACTGTCAACAGCATTCACATTGATAGTTTTCATAGCCCCTATTAC 480 consensus_13551#3 ------------------------------------------------------------ consensus_13551#1 CTTAGTAGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGG 235 consensus_13551#2 ------------------------------------------------------------ consensus_13551#0 TACTTTCCTTGTTCGGCTAGTCAGCGTGCATTACAGTAGAAAGGCGACCTCTGTTCTGTT 540 consensus_13551#3 -----------------------------------------------------TTCTGTT 7 consensus_13551#1 GAGCAGCCTAAACCGTGAAAACGGGGTTGTGGGAGAGCAATACAAGCGTCTAATCCCATT 295 consensus_13551#2 ---------------------------------TGGACTG-AGGAGTGAAAAATCCC-TT 25 * * ** consensus_13551#0 TGGA--ATGTGGCTATCTTTATGGCCATTCTTGTTTGAGAAGATCAACAAGACCAATGTG 598 consensus_13551#3 TGGA--ATGTGGCTATCTTTATGGCCATTCTTGTTTGAGAAGATCAACAAGACCAATGTG 65 consensus_13551#1 AGCCATACGCAGCCCGAGTGTCTTCCCCTTCCCTTTGTGGCGTAAAAGAAAGAAAATCTC 355 consensus_13551#2 AGCC-TACGCGGCCCGAGTGTCTTCCCCTTCCCTTTGTGGCGTAAAAGAAAGAAAATCTC 84 * * * ** * ** * **** * * ** ** *** * consensus_13551#0 --GTTTTCTCTGGTGAAAGTGTACTTCCAAAAAAGCGTGTCTTGTTATTTGCCAACCACA 656 consensus_13551#3 --GTTTTCTCTGGTGAAAGTGTACTTCCAAAAAAGCGTGTCTTGTTATTTGCCAACCACA 123 consensus_13551#1 CCGTCTCCTCCGCTCCTTGCGCCGCCAAGACGAGTCGCGGCTGAACAGGGGAGGGGCGGC 415 consensus_13551#2 CCGTCTCCTCCGCTCCTTGCGCCGCCAAGACGAGTCGCGGCTGAACAGGGGAGGGGCGGC 144 ** * *** * * * * * * ** * ** * * * consensus_13551#0 GGACTGAGGTTGACTGGATGTATTTGTGGGATCTTGCATTGAGGAAAGGCTATTTAGGAT 716 consensus_13551#3 GGACTGAGGTTGACTGGATGTATTTGTGGGATCTTGCATTGAGGAAAGGCTATTTAGGAT 183 consensus_13551#1 GATCTCCATCTGGCGAGCAGAGCAGGCGAGAGGATTATGTGAGAAGAAATGCATCAAGA- 474 consensus_13551#2 GATCTCCATCTGGCGAGCAGAGCAGGCGAGAGGATTATGTGAGAAGAAATGCATCAAGA- 203 * ** ** * * * * * ** * **** * * * * ** consensus_13551#0 ATATCAAGTACATCCTTAAGAGCA--GCTTGA-------TGAAATTGCCTGTTTTTAGCT 767 consensus_13551#3 ATATCAAGTACATCCTTAAGAGCA--GCTTGA-------TGAAATTGCCTGTTTTTAGCT 234 consensus_13551#1 --GTCAAGAATATGCTTCGGAGCATGGTCTGCCTATACTTAAAAATGTTCTTCTTCCAAA 532 consensus_13551#2 --GTCAAGAATATGCTTCGGAGCATGGTCTGCCTATACTTAAAAATGTTCTTCTTCCAAA 261 ***** * ** *** ***** * ** * *** ** * ** consensus_13551#0 GGGCATTTCACATTTTTGA-GTTTATCCCAGTAGAACGGAA----ATGGGAGATTGATGA 822 consensus_13551#3 GGGCATTTCACATTTTTGA-GTTTATCCCAGTAGAACGGAA----ATGGGAGATTGATGA 289 consensus_13551#1 GACAAAGGGGTTCCTTTGCTGTTTGCAAGAGTTGAAGAGCTCCCTAGATGCAGTTTATGA 592 consensus_13551#2 GACAAAGGGGTTCCTTTGCTGTTTGCAAGAGTTGAAGAGCTCCCTAGATGCAGTTTATGA 321 * * **** **** *** *** * * * ** **** consensus_13551#0 AGCAATTATCCAGAACAAACTGTCAGCATTTAAGGACCCCAGAGACCCCCTCTGGTTGGC 882 consensus_13551#3 AGCAATTATCCAGAACAAACTGTCAGCATTTAAGGACCCCAGAGACCCCCTCTGGTTGGC 349 consensus_13551#1 TGTCACAATAGCGTATAAGC-ATCGCCTGCCAGATTTTCTGGATATTATATATGGC--AC 649 consensus_13551#2 TGTCACAATAGCGTATAAGC-ATCGCCTGCCAGATTTTCTGGATATTATATATGGC--AC 378 * * ** * * ** * ** * * * ** * * *** * consensus_13551#0 CGTTTTCCCTGAGGGCACTGATTATACTGAGAAGAAATGCATC---AAGAGTCAAGAATA 939 consensus_13551#3 CGTTTTCCCTGAGGGCACTGATTATACGTAAGGCATATTTATCTTTAGAATTCATTAATA 409 consensus_13551#1 CGATCCTTCTGAAGTCCACA--TCCACATCAGAACTGTTAAGCTCTGTGACATTCCAACG 707 consensus_13551#2 CGATCCTTCTGAAGTCCACA--TCCACATCAGAACTGTTAAGCTCTGTGACATTCCAACG 436 ** * **** * * * ** * * * * ** consensus_13551#0 TGCTTCGGAGCATGGTCTGCCTATACTTAAAAATGTTCTTCTTCCAAAGACAAAGGGGTT 999 consensus_13551#3 TATTTTT-AGTATGATCCACCTGCACTATCAGAATTTATATTCTTAATCACATA-----T 463 consensus_13551#1 TCAGAAGATGAAGTAACCGATTGGATGATAGAGAGGTTCAGGCAGAAGGACCAGC---TT 764 consensus_13551#2 TCAGAAGATGAAGTAACCGATTGGATGATGNAGAGGTTCAGGCAGAAGGACCAGC---TT 493 * * * * * * * ** ** * consensus_13551#0 CCTTTGCTGTTTGCAAGAGTTGAAGAGCTCCCTAG--ATGCAGTTTATGATGTCACAATA 1057 consensus_13551#3 CTGTCGAACTTTCTAAGTTTTCAA--ATATACTGA--ACGCATTTTCCCCTGTCAATACT 519 consensus_13551#1 CTGTCAGATTTTTTCATGCAAGGCCACTTCCCTGATGAAGGAACTGAAGGGG-ATGTATC 823 consensus_13551#2 CTGTCAT-TTTTTTCATGCAAGGCCACTTCCCTGATGAAGGAACTGAAGGGGGATGTATC 552 * * *** * ** * * * * * * consensus_13551#0 GCGTATAAGCATCGCCTGCCAGATTTTCTGGAT-ATTATATATGGCACCGATCCTTCTGA 1116 consensus_13551#3 GCCTTTGAGAAACGGTTTCTCATTCTATTGAGTTATTGCCTATG-TAT------------ 566 consensus_13551#1 CACACCGG-AGTGCCTTGCTAATTTCATTGCAATAGTCAGCTCGACAGGCTTCTTCTTGT 882 consensus_13551#2 CACACCGGGAGTGCCTTGCTAATTTCATTGCAATAGTCAGCTCGACAGGCTTCTTCTTG- 611 * * * ** * * * * consensus_13551#0 AGTCCACATCCACATCAGAACTGTTAAGCTCTGTGACATTCCAACGTCAGAAGATGAAGT 1176 consensus_13551#3 ------------------------------------------------------------ consensus_13551#1 ACCTATCTCTTTTTTCGTCTGTGTGGTTCAAGGTCTATGTATTATTAAGCTGCGCTTACC 942 consensus_13551#2 ------------------------------------------------------------ consensus_13551#0 AACCGATTGGATGATAGAGAGGTTCAGGCAGAAGGACCAGCTTCTGTCAGATTTTTTCAT 1236 consensus_13551#3 ------------------------------------------------------------ consensus_13551#1 TTACATTTGTTACCTATTTCTCCATTCAACCACCCCAACTGATATGCTCATCAGAGGGTG 1002 consensus_13551#2 ------------------------------------------------------------ consensus_13551#0 GCAAGGCCACTTCCCTGATGAAGGAACTGAAGGGGATGTATCCACACCGGAGTGCCTTGC 1296 consensus_13551#3 ------------------------------------------------------------ consensus_13551#1 GAACCCATGCCAAAAAGGTACTGTAGAAAGAGGCTGTAGCTTTGACTGGAAACTGTATAT 1062 consensus_13551#2 ------------------------------------------------------------ consensus_13551#0 TAATTTCATTGCAATAGTCAGCTCGACAGGCTTCTTCTTGTACCTATCTCTTTTTTCGTC 1356 consensus_13551#3 ------------------------------------------------------------ consensus_13551#1 CTGCAAAAGATATTTTCTGTAGAAAAAAAAAA---------------------------- 1094 consensus_13551#2 ------------------------------------------------------------ consensus_13551#0 TGTGTGGTTCAAGGTCTATGTATTATTAAGCTGCGCTTACCTTACATTTGTTACCTATTT 1416 consensus_13551#3 ------------------------------------------------------------ consensus_13551#1 ------------------------------------------------------------ consensus_13551#2 ------------------------------------------------------------ consensus_13551#0 CTCCATTCAACCACCCCAACTGATATGCTCATCAGAGGGTGGAACCCATGCCAAAAAGGT 1476 consensus_13551#3 ------------------------------------------------------------ consensus_13551#1 ------------------------------------------------------------ consensus_13551#2 ------------------------------------------------------------ consensus_13551#0 ACTGTAGAAAGAGGCTGTAGCTTTGACTGGAAACTGTATATCTGCAAAAGATATTTACTG 1536 consensus_13551#3 ------------------------------------------------------------ consensus_13551#1 ------------------------------------------------------------ consensus_13551#2 ------------------------------------------------------------ consensus_13551#0 TAGAAACCCTTGGCTTGTGCAATTAAAATCGTTCCTCTTTTGTTTTACTTCTGCAAGATG 1596 consensus_13551#3 ------------------------------------------------------------ consensus_13551#1 ------------------------------------------------------------ consensus_13551#2 ------------------------------------------------------------ consensus_13551#0 ATTTAGTAAAAAAAAA 1612 consensus_13551#3 ---------------- consensus_13551#1 ---------------- consensus_13551#2 ---------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||