cluster # 13553

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Oryza sativa
cluster # 13553 cluster # 13553 Sequences # 13 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_13553#0 length = 1371 sequences # 2
consensus_13553#1 length = 904 sequences # 7

consensus_13553#2 length = 721 sequences # 3
consensus_13553#3 length = 474 sequences # 1

consensusID : consensus_13553#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1371
fasta sequence

                              [CGCACCACCCGCGCGCCCCGCTTGATCGGAGAGGAGGGGGTTTATATTGATTTTTGCGATCACTGCATACGTCGTCTTCTTTGCGGATTTGAGACCGAGGATCGATGGCGGCCGGAGGGATGCTGTGCGTGTCGTCGTCGCCGACGGCGTCGGCGTCGGTGGCGAGGGGGCGGCGGCAGCGGCGGAGGAGCGTCGAGGTGAGGTGCAGCTGCCGCCGGGGGCCACCAAGGGCGAGGTCAAGAGGGCCTTCCGCCGCCTCGCGCTCACGGTGCGTCTCGCCGGATCTGCGCCGGCGTCTCGGGTTTTTTTTTTTCTCTTTTATTTTTCAGTTATTGCAGAACATTCTTCTGATGAGAGGTTGGAGAGCTGAAGAAATTTTTTTTTCTCTTGCTGTTCTTGGCGTGCAGTATCATCCAGACGTTTCAAAGGAGAGCGATAGCGGCGTCCATTTCCAGCGGATCAACGTGGCCTACCAGGTAATTTCAAACTAAATCCGATTTCACTCTCACCTCAAAAAAAATCACAGTGAATTATCAACGTCAGTATCATCAGCAACACACCGCAACAACTCTGAATCCAACCAATATCTAGCCAAGAACAATAGCATATTAAAATTACCACCACTCCAAACATTTTTCGAGAGTATGATCAGTTGAAACCCCTTCTCTGATTTTTTTCACCTCGCCTCGATAGCTTAACGTTGATCTTGTAAACACTTGTAACCCTTCTTTTTTTTTCTCTTAATAAAATTTTATCGGCCATCCAAAAAAAAAAAATCTCCGTAAACTTTTTTTTAATGAACCGACACAACACAGTGCCAATTTCATTGAATATAGCAGGAGAAAAAACTGTAAACCTCTGCAAACTTTAAATTCAGTATTTTAGATTCTTAGATTCAGTGCAATTTTCAGTTGCTGATCACATTTGGTGTGATGGATGTGCGTGCAGATGGTGATGGGCAACATGAGGGAGGCCGAGGAGAGGCTGGAGTACTGGAGGCTCAAGTACGGCCTCGACGACGAGGACCTGGACAAGTACAGGAACCACCTCAACGACGAAGACGACGATGAATGGTTCGACGTCTAATCTGAGGATCGTGAATCGCTGCCTGGACTGACGGGATCAACGAGCACAGATGCAAACCATCTCGTTGATCTCCATCATTGATACTAGAAATTTAATCTTGTTTATAGCACTGAAAAATCTGTTCATTTGTATGTATGCCTGTATGTAGAACAGTAGTAGTAGCAGCTAGAACTGAAAAAATCTGTTTATTTGTATGTATGCCTTTCCCCCGGTTTTATTGTAGGGGAAGGGGTACGATTAGACTGATATATATATAACTCAATTGGTACTAANAAAAAAAAAAAA]

[+] EMBL AK071882             [CGCACCACCCGCGCGCCCCGCTTGATCGGAGAGGAGGGGGTTTATATTGATTTTTGCGATCACTGCATACGTCGTCTTCTTTGCGGATTTGAGACCGAGGATCGATGGCGGCCGGAGGGATGCTGTGCGTGTCGTCGTCGCCGACGGCGTCGGCGTCGGTGGCGAGGGGGCGGCGGCAGCGGCGGAGGAGCGTCGAGGTGAGGTGCAGCTGCCGCCGGGGGCCACCAAGGGCGAGGTCAAGAGGGCCTTCCGCCGCCTCGCGCTCACGGTGCGTCTCGCCGGATCTGCGCCGGCGTCTCGGGTTTTTTTTTTTCTCTTTTATTTTTCAGTTATTGCAGAACATTCTTCTGATGAGAGGTTGGAGAGCTGAAGAAATTTTTTTTTCTCTTGCTGTTCTTGGCGTGCAGTATCATCCAGACGTTTCAAAGGAGAGCGATAGCGGCGTCCATTTCCAGCGGATCAACGTGGCCTACCAGGTAATTTCAAACTAAATCCGATTTCACTCTCACCTCAAAAAAAATCACAGTGAATTATCAACGTCAGTATCATCAGCAACACACCGCAACAACTCTGAATCCAACCAATATCTAGCCAAGAACAATAGCATATTAAAATTACCACCACTCCAAACATTTTTCGAGAGTATGATCAGTTGAAACCCCTTCTCTGATTTTTTTCACCTCGCCTCGATAGCTTAACGTTGATCTTGTAAACACTTGTAACCCTTCTTTTTTTTTCTCTTAATAAAATTTTATCGGCCATCCAAAAAAAAAAAATCTCCGTAAACTTTTTTTTAATGAACCGACACAACACAGTGCCAATTTCATTGAATATAGCAGGAGAAAAAACTGTAAACCTCTGCAAACTTTAAATTCAGTATTTTAGATTCTTAGATTCAGTGCAATTTTCAGTTGCTGATCACATTTGGTGTGATGGATGTGCGTGCAGATGGTGATGGGCAACATGAGGGAGGCCGAGGAGAGGCTGGAGTACTGGAGGCTCAAGTACGGCCTCGACGACGAGGACCTGGACAAGTACAGGAACCACCTCAACGACGAAGACGACGATGAATGGTTCGACGTCTAATCTGAGGATCGTGAATCGCTGCCTGGACTGACGGGATCAACGAGCACAGATGCAAACCATCTCGTTGATCTCCATCATTGATACTAGAAATTTAATCTTGTTTATAGCACTGAAAAATCTGTTCATTTGTATGTATGCCTGTATGTAGAACAGTAGTAGTAGCAGCTAGAACTGAAAAAATCTGTTTATTTGTATGTATGCCTTTCCCCCGGTTTTATTGTAGGGGAAGGGGTACGATTAGACTGATATATATATAACTC                         ]
[+] EMBL CA753980             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ACGGCCTCGACGACGAGGACCTGGACAAGTACAGGAACCACCTCAACGACGAAGACGACGATGAATGGTTCGACGTCTAATCTGAGGATCGTGAATCGCTGCCTGGACTGACGGGATCAACGAGCACAGATGCAAACCATCTCGTTGATCTCCATCATTGATACTAGAAATTTAATCTTGTTTATAGCACTGAAAAATCTGTTCATTTGTATGTATGCCTGTATGTAGAACAGTAGTAGTAGCAGCTAGAACTGAAAAAATCTGTTTATTTGTATGTATGCCTTTCCCCCGGTTTTATTGTAGGGGAAGGGGTACGATTAGACTGATATATATATAACTCAATTGGTACTAANAAAAAAAAAAAA]




>consensus_13553#0
CGCACCACCCGCGCGCCCCGCTTGATCGGAGAGGAGGGGGTTTATATTGATTTTTGCGAT
CACTGCATACGTCGTCTTCTTTGCGGATTTGAGACCGAGGATCGATGGCGGCCGGAGGGA
TGCTGTGCGTGTCGTCGTCGCCGACGGCGTCGGCGTCGGTGGCGAGGGGGCGGCGGCAGC
GGCGGAGGAGCGTCGAGGTGAGGTGCAGCTGCCGCCGGGGGCCACCAAGGGCGAGGTCAA
GAGGGCCTTCCGCCGCCTCGCGCTCACGGTGCGTCTCGCCGGATCTGCGCCGGCGTCTCG
GGTTTTTTTTTTTCTCTTTTATTTTTCAGTTATTGCAGAACATTCTTCTGATGAGAGGTT
GGAGAGCTGAAGAAATTTTTTTTTCTCTTGCTGTTCTTGGCGTGCAGTATCATCCAGACG
TTTCAAAGGAGAGCGATAGCGGCGTCCATTTCCAGCGGATCAACGTGGCCTACCAGGTAA
TTTCAAACTAAATCCGATTTCACTCTCACCTCAAAAAAAATCACAGTGAATTATCAACGT
CAGTATCATCAGCAACACACCGCAACAACTCTGAATCCAACCAATATCTAGCCAAGAACA
ATAGCATATTAAAATTACCACCACTCCAAACATTTTTCGAGAGTATGATCAGTTGAAACC
CCTTCTCTGATTTTTTTCACCTCGCCTCGATAGCTTAACGTTGATCTTGTAAACACTTGT
AACCCTTCTTTTTTTTTCTCTTAATAAAATTTTATCGGCCATCCAAAAAAAAAAAATCTC
CGTAAACTTTTTTTTAATGAACCGACACAACACAGTGCCAATTTCATTGAATATAGCAGG
AGAAAAAACTGTAAACCTCTGCAAACTTTAAATTCAGTATTTTAGATTCTTAGATTCAGT
GCAATTTTCAGTTGCTGATCACATTTGGTGTGATGGATGTGCGTGCAGATGGTGATGGGC
AACATGAGGGAGGCCGAGGAGAGGCTGGAGTACTGGAGGCTCAAGTACGGCCTCGACGAC
GAGGACCTGGACAAGTACAGGAACCACCTCAACGACGAAGACGACGATGAATGGTTCGAC
GTCTAATCTGAGGATCGTGAATCGCTGCCTGGACTGACGGGATCAACGAGCACAGATGCA
AACCATCTCGTTGATCTCCATCATTGATACTAGAAATTTAATCTTGTTTATAGCACTGAA
AAATCTGTTCATTTGTATGTATGCCTGTATGTAGAACAGTAGTAGTAGCAGCTAGAACTG
AAAAAATCTGTTTATTTGTATGTATGCCTTTCCCCCGGTTTTATTGTAGGGGAAGGGGTA
CGATTAGACTGATATATATATAACTCAATTGGTACTAANAAAAAAAAAAAA

consensusID : consensus_13553#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 904
fasta sequence

                              [CACCACCCGCGCGCCCCGCTTGATCGGAGAGGAGGGGGTTTATATTGATTTTTGCGATCACTGCATACATCGTCGTCGTCTTCTTTGCGGATTTGAGACCGAGGATCGATGGCGGCCGGAGGGATGCTGTGCGTGTCGTCGTCGCCGACGGCGTCGGCGTCGGTGGCGAGGGGGCGGCGGCAGCGGCGGAGGAGCGTCGAGGTGAGGTGCAGCTCCGTGGCGGCCGCCGGGCCGGGGGGCCCCGTGGAGGATCACTACCGGACTCTGCAGCTGCCGCCGGGGGCCACCAAGGGCGAGGTCAAGAGGGCCTTCCGCCGCCTCGCGCTCACGTATCATCCAGACGTTTCAAAGGAGAGCGATAGCGGCGTCCATTTCCAGCGGATCAACGTGGCCTACCAGATGGTGATGGGCAACATGAGGGAG-GCCGAGGAGAGGCTGGAGTACTGGAGGCTCAAGTACGGCCTCGACGACGAGGACCTGGACAAGTACAGGAACCACCTCAACGACGAAGACGACGATGAATGGTTCGACGTCTAATCTGA-GGATCGTGAATCGCTGCCTGGACTGACGGGATCAACGAGCACAGATGCAAACCATCTCGTTGATCTCCATCATTGATACTAGAAATTTAATCTT-GTTTATAGCACTGAAAAATCTGTTCATTTGTATGTATGCCT-GTATGTAGAACAGTAGTAGTAGCAGCTAGAACTGAAAAAATCTGTTTATTTGTATGTATGCCTTTCCCCCGGTTTTATTGTAGGGGAAGGGGTACGATTAGACTGATATATATATAACTCAATTGGTACTAATTTTGTGCTTATAATTATATGGTCTCTTGATCGANAAAAAAAAAAAAAAAAAAAAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAGCACCTCGGC]

[+] EMBL AK107961             [CACCACCCGCGCGCCCCGCTTGATCGGAGAGGAGGGGGTTTATATTGATTTTTGCGATCACTGCATA      CGTCGTCTTCTTTGCGGATTTGAGACCGAGGATCGATGGCGGCCGGAGGGATGCTGTGCGTGTCGTCGTCGCCGACGGCGTCGGCGTCGGTGGCGAGGGGGCGGCGGCAGCGGCGGAGGAGCGTCGAGGTGAGGTGCAGCTCCGTGGCGGCCGCCGGGCCGGGGGGCCCCGTGGAGGATCACTACCGGACTCTGCGGCTGCCGCCGGGGG CACCAAGGGCGAGGTCAAGAGGGCCTTCCGCCGCCTCGCGCTCACGTATCATCCAGACGTTTCAAAGGAGAGCGATAGCGGCGTCCATTTCCAGCGGATCAACGTGGCCTACCAGATGGTGATGGGCAACATGAGGGAG GCCGAGGAGAGGCTGGAGTACTGGAGGCTCAAGTACGGCCTCGACGACGAGGACCTGGACAAGTACAGGAACCACCTCAACGACGAAGACGACGATGAATGGTTCGACGTCTAATCTGA GGATCGTGAATCGCTGCCTGGACTGACGGGATCAACGAGCGCAGATGCAAACCATCTCGTTGATCTCCATCATTGATACTAGAAATTTAATCTT GTTTATAGCACTGAAAAATCTGTTCATTTGTATGTATGCCT GTATGTAGAACAGTAGTAGTAGCAGCTAGAACTGAAAAAATCTGTTTATTTGTATGTATGCCTTTCCCCCGGTTTTATTGTAGGGGAAGGGGTACGATTAGACTGATATATATATAACTC                                                                                                           ]
[+] EMBL CB634305             [                CGCTTGATCGGAGAGGAGGGGCTTTATATTGATTTTTGCGATCACTGCATACATCGTCGTCGTCTTCTTTGCGGATTTGAGACCGAGGATCGATGGCGGCCGGAGGGATGCTGTGCGTGTCGTCGTCGCCGACGGCGTCGGCGTCGGTGGCGAGGGGGCGGCGGCAGCGGCGGAGGAGCGTCGAGGTGAGGTGCAGCTCCGTGGCGGCCGCCGGGCCGGGGGGCCCCGTGGAGGATCACTACCGGACTCTGCAGCTGCCGCCGGGGGCCACCAAGGGCGAGGTCAAGAGGGCCTTCCGCCGCCTCGCGCTCACGTATCATCCAGACGTTTCAAAGGAGAGCGATAGCGGCGTCCATTTCCAGCGGATCAACGTGGCCTACCAGATGGTGATGGGCAACATGAGGGAG GCCGAGGAGAGGCTGGAGTACTGGAGGCTCAAGTACGGCCTCGACGACGAGGACCTGGACAAGTACAGGAACCACCTCAACGACGAAGACGACGATGAATGGTTCGACGTCTAATCTGA GGATCGTGAATCGCTGCCTGGACTGACGGGATCAACGAGCACAGATGCAAACCATCTCGTTGATCTCCATCATTGATACTAGAAATTTAATCTT GTTTATAGCACTGAAAAATCTGTTCATTTGTATGTATGCCT GTATGTAGAACAGTAGTAGTAGCAGCTAGAACTGAAAAAATCTGTTTATTTGTATGTATGCCTTTCCCCCGGTTTTATTGTAGGGGAAGGGGTACGATTAGACTG  ATATATATAACTCAAT                                                                                                        ]
[-] EMBL CB634306             [                                     GTTTATATTGATTTTTGCGATCACTGCATACATCGTCGTCGTCTTCTTTGCGGATTTGAGACCGAGGATCGATGGCGGCCGGAGGGATGCTGTGCGTGTCGTCGTCGCCGACGGCGTCGGCGTCGGTGGCGAGGGGGCGGCGGCAGCGGCGGAGGAGCGTCGAGGTGAGGTGCAGCTCCGTGGCGGCCGCCGGGCCGGGGGGCCCCGTGGAGGATCACTACCGGACTCTGCAGCTGCCGCCGGGGGCCACCAAGGGCGAGGTCAAGAGGGCCTTCCGCCGCCTCGCGCTCACGTATCATCCAGACGTTTCAAAGGAGAGCGATAGCGGCGTCCATTTCCAGCGGATCAACGTGGCCTACCAGATGGTGATGGGCAACATGAGGGAG GCCGAGGAGAGGCTGGAGTACTGGAGGCTCAAGTACGGCCTCGACGACGAGGACCTGGACAAGTACAGGAACCACCTCAACGACGAAGACGACGATGAATGGTTCGACGTCTAATCTGA GGATCGTGAATCGCTGCCTGGACTGACGGGATCAACGAGCACAGATGCAAACCATCTCGTTGATCTCCATCATTGATACTAGAAATTTAATCTT GTTTATAGCACTGAAAAATCTGTTCATTTGTATGTATGCCT GTATGTAGAACAGTAGTAGTAGCAGCTAGAACTGAAAAAATCTGTTTATTTGTATGTATGCCTTTCCCCCGGTTTTATTGTAGGGGAAGGGGTAAGAGTAGACTGATATATATAac                                                                                                               ]
[+] EMBL BU667229             [                                                                                                                                                                                                                                          GGGGGCCCCGTGGAGGATCACTACCGGACTCTGCAGCTGCCGCCGGGGGCCACCAA GGCGAGGTCAAGAGGGCCTTCCGCCGCCTCGCGCTCACGTATCATCCAGACGTTTCAAAGGAGAGCGATAGCGGCGTCCATTTCCAGCGGATCAACGTGGCCTACCAGATGGTGATGGGCAACATGAGGGAG GCCGAGGAGAGGCTGGAGTACTGGAGGCTCAAGTACGGCCTCGACGACGAGGACCTGGACAAGTACAGGAACCACCTCAACGACGAAGACGACGATGAATGGTTCGACGTCTAATCTGACGGATCGTGAATCGCTGCCTGGACTGACGGGATCAACGAGCA                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL BU667150             [                                                                                                                                                                                                                                             GGCCCCGTGGAGGATCACTACCGGACTCTGCAGCTGCCGCCGGGGGCCACCAAGGGCGAGGTCAAGAGGGCCTTCCGCCGCCTCGCGCTCACGTATCATCCAGACGTTTCAAAGGAGAGCGATAGCGGCGTCCATTTCCAGCGGATCAACGTGGCCTACCAGATGGTGATGGGCAACATGAGGGAGTGCCGAGGAGAGGCTGGAGTACTGGAGGCTCAAGTACGGCCTCGACGACGAGGACCTGGACAAGTACAGGAACCACCTCAACGACGAAGACGACGATGAATGGTTCGACGTCTAATCTGA GGATCGTGAATCGCTGCCTGGACTGACGGGATCAACGAGCACAGATGCAAACCATCTCGTTGATCTCCATCATTGATACTAGAAATTTAATCTTGGTTTATAGCACTGAAAAATCTGTTCATTTGTATGTATGCCTGGTATGTAGAACAGTAGTAGTAGCAGCTAGAACT                                                                                                                                                                                                  ]
[+] EMBL BU667266             [                                                                                                                                                                                                                                                 CCGTGGAGGATCACTACCGGACTCTGCAGCTGCCGCCGGGGGCCACCAAGGGCGAGGTCAAGAGGGCCTTCCGCCGCCTCGCGCTCACGTATCATCCAGACGTTTCAAAGGAGAGCGATAGCGGCGTCCATTTCCAGCGGATCAACGTGGCCTACCAGATGGTGATGGGCAACATGAGGGAG GCCGAGGAGAGGCTGGAGTACTGGAGGCTCAAGTACGGCCTCGACGACGAGGACCTGGACAAGTACAGGAACCACCTCAACGACGAAGACGACGATGAATGGTTCGACGTCTAATCTGA GGATCGTGAATCGCTGCCTGGACTGACGGGATCAACGAGCACAGATGCAAACCATCTCGTTGATCTCCATCATTGATACTAGAAATTTAATCTT GTTTATAGCACTGAAAAA                                                                                                                                                                                                                                                           ]
[+] EMBL AW070119             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ACGAGCACAGATGCAAACCATCTCGTTGATCTCCATCATTGATATTAGAAATTTAATCTT GTTTATAGCACTGAAAAATCTGCTCATTTGTATGTATGCCT GTATGTAGAACAGTAGTAGTAGCAGCTAGAACTGAAAAAATCTGTTTATTTGTATGTATGCCTTTCCCCCGGTTTTATTGTAGGGGAAGGGGTACGATTAGACTGATATATATATAACTCAATTGGTACTAATTTTGTGCTTATAATTATATGGTCTCTTGATCGANAAAAAAAAAAAAAAAAAAAAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAGCACCTCGGC]




>consensus_13553#1
CACCACCCGCGCGCCCCGCTTGATCGGAGAGGAGGGGGTTTATATTGATTTTTGCGATCA
CTGCATACATCGTCGTCGTCTTCTTTGCGGATTTGAGACCGAGGATCGATGGCGGCCGGA
GGGATGCTGTGCGTGTCGTCGTCGCCGACGGCGTCGGCGTCGGTGGCGAGGGGGCGGCGG
CAGCGGCGGAGGAGCGTCGAGGTGAGGTGCAGCTCCGTGGCGGCCGCCGGGCCGGGGGGC
CCCGTGGAGGATCACTACCGGACTCTGCAGCTGCCGCCGGGGGCCACCAAGGGCGAGGTC
AAGAGGGCCTTCCGCCGCCTCGCGCTCACGTATCATCCAGACGTTTCAAAGGAGAGCGAT
AGCGGCGTCCATTTCCAGCGGATCAACGTGGCCTACCAGATGGTGATGGGCAACATGAGG
GAGGCCGAGGAGAGGCTGGAGTACTGGAGGCTCAAGTACGGCCTCGACGACGAGGACCTG
GACAAGTACAGGAACCACCTCAACGACGAAGACGACGATGAATGGTTCGACGTCTAATCT
GAGGATCGTGAATCGCTGCCTGGACTGACGGGATCAACGAGCACAGATGCAAACCATCTC
GTTGATCTCCATCATTGATACTAGAAATTTAATCTTGTTTATAGCACTGAAAAATCTGTT
CATTTGTATGTATGCCTGTATGTAGAACAGTAGTAGTAGCAGCTAGAACTGAAAAAATCT
GTTTATTTGTATGTATGCCTTTCCCCCGGTTTTATTGTAGGGGAAGGGGTACGATTAGAC
TGATATATATATAACTCAATTGGTACTAATTTTGTGCTTATAATTATATGGTCTCTTGAT
CGANAAAAAAAAAAAAAAAAAAAAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAGCACCT
CGGC

consensusID : consensus_13553#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 721
fasta sequence

                              [TTTTTAATAAACAAGTTATTCGCCGAAAAATTTATTTTATTTCCCCACGCTCTCCTTGTGAAAAGGCCCCACACACGCGAAGATTTAAATTAGGACAATCCTTATGCCACGGGCGGGGGCCCGGAAGATTCTTCCGCATTTGGTTCCGCCGGGTCAACAGGTCATGTCAAAGG-GCTT-CGCCG-CTTGGGCTC-TTTATCAT-CAGACGTTT-AAAGAAGAGCGATAGCGGCGTCCATTTCCAGCGGATCCAGGTGG-CCTACCAGATGGTGATGGGCAACATGAGGGAGGCCGAGGAGAGGCTGGAGTACTGGAGGCTCAAGTACGGCCTCGACGACGAGGACCTGGACAAGTACAGGAACCACCTCAACGACGAAGACGACGATGAATGGTTCGACGTCTAATCTGAGGATCGTGAATCGCTGCCTGGACTGACGGGATCAACGAGCACAGATGCAAACCATCTCGTTGATCTCCATCATTGATACTAGAAATTTAATCTTGTTTATAGCACTGAAAAATCTGTTCATTTGTATGTATGCCTGTATGTAGAACAGTAGTAGTAGCAGCTAGAACTGAAAAAATCTGTTTATTTGTATGTATGCCTTTCCCCCGGTTTTATTGTAGGGGAAGGGGTACGATTAGACTGATATATATATAACTCAATTGGTACTAATTTTGTGCTAAAAAAAAAAAAAAAAAAAAAAAAAACTCGAGACTAGTTCTC]

[-] EMBL AW155365             [TTTTTAATAAACAAGTTATTCGCCGAAAAATTTATTTTATTTCCCCACGCTCTCCTTGTGAAAAGGCCCCACACACGCGAAGATTTAAATTAGGACAATCCTTATGCCACGGGCGGGGGCCCGGAAGATTCTTCCGCATTTGGTTCCGCCGGGTCAACAGGTCATGTCAAAGG GCTT CGCCG CTTGGGCTC TTTATCAT CAGACGTTT AAAGAAGAGCGATAGCGGCGTCCATTTCCAGCGGATCTAGGTCG CTTACCAGATGGTGATGGGCAACATGAGGAAGGCCAAGAACAGGCTGGAGTACTGGAGGCTCAAGTACGGCCTAGACGACGAGGACCTGGACAAGTACAGGAACCACCTCAACGCCGAAGACGACGATGAATGGTTCCACGTCTAATCTGAGGATCGTCAATCGCTGCCTGGACTGACGGGATCAACGAGCACAGATGCAAACCATCTCGTTGATCTCCATCATTGAGACTAGAAATTTAATCTTGTTTATAGCACTGAAAAATCTGTTCATTTGTATGTATGCCTGTATGTAGAACAGTAGTAGTAGCAGCTAGATCTGAAAAAATCTGTTTATTTGTATGTATGCCTTTCCCCCGGTTTTATTGTAGGGAAAGGGGTACGATTAGACTGATATATATATAACTCAATTGGTACTAATTTTGTGCTAAAAAAAAACAAAAAAAAAAAAAAAACTCGAGACTAGTTCTC]
[-] EMBL AW155355             [                                                                                                                                                                         AAGGCCCTTCCGCCGCCTGGGGCTCAGGTTTCATCCAGACGTTTCAAAGGAGAGGAAAACCGGCGTCCATTTCCAGCGGATTCAACTGGCCCTCCCAGATGGTGATGGGCAACATGAGGGAGGCCGAGGAGAGGCTGGAGTACTGGAGGCTCAAGTACGGCCTCGACGACGAGGACCTGGACAAGTACAGGAACCACCTCAACGACGAAGACGACGATGAATGGTTCGACGTCTAATCTGAGGATCGTGAATCGCTGCCTGGACTGACGGGATCAACGAGCACAGATGCAAACCATCTCGTTGATCTCCATCATTGATACTAGAAATTTAATCTTGTTTATAGCACTGAAAAATCTGTTCATTTGTATGTATGCCTGTATGTAGAACAGTAGTAGTAGCAGCTAGAACTGAAAAAATCTGTTTATTTGTATGTATGCCTTTCCCCCGGTTTTATTGTAGGGGAAGGGGTACGATTAGACTGATATATATATAACTCAATTGGTACTAATTTTGTGCTAAAAAAAAAAAAAAAAAAAAAAAAAACTCGAGACTAGTTCTC]
[+] EMBL AU057970             [                                                                                                                                                                                                                                         GTCCATTTCCAGCGGATCAACGTGG CCTACCAGATGGTGATGGGCAACATGAGGGAGGCCGAGGAGAGGCTGGAGTACTGGAGGCTCAAGTACGGCCTCGACGACGAGGACCTGGACAAGTACAGGAACCACCTCAACGACGAAGACGACGATGAATGGTTCGACGTCTAATCTGAGGATCGTGAATCGCTGCCTGGACTGACGGGATCAACGAGCACAGATGCAAACCATCTCGTTGATCTCCATCATTGATACTAGAAATTTAATCTTGTTTATAGCACTGAAAAATCTGTTCATTTGTATGTATGCCTGTATGTAGAACAGTAGTAGTAGCAGCTAGAACTGAAAAAATCTGTTTATTTGTATGTATGCCTTTCCCCCGGTTTTATTGTNGGGGAAGGGGTACGATTAGACTGATATATATATAACTCAATTGGTACTAATTTTGTGNTTNTAAAAAAAAAAAAAAAAA                      ]




>consensus_13553#2
TTTTTAATAAACAAGTTATTCGCCGAAAAATTTATTTTATTTCCCCACGCTCTCCTTGTG
AAAAGGCCCCACACACGCGAAGATTTAAATTAGGACAATCCTTATGCCACGGGCGGGGGC
CCGGAAGATTCTTCCGCATTTGGTTCCGCCGGGTCAACAGGTCATGTCAAAGGGCTTCGC
CGCTTGGGCTCTTTATCATCAGACGTTTAAAGAAGAGCGATAGCGGCGTCCATTTCCAGC
GGATCCAGGTGGCCTACCAGATGGTGATGGGCAACATGAGGGAGGCCGAGGAGAGGCTGG
AGTACTGGAGGCTCAAGTACGGCCTCGACGACGAGGACCTGGACAAGTACAGGAACCACC
TCAACGACGAAGACGACGATGAATGGTTCGACGTCTAATCTGAGGATCGTGAATCGCTGC
CTGGACTGACGGGATCAACGAGCACAGATGCAAACCATCTCGTTGATCTCCATCATTGAT
ACTAGAAATTTAATCTTGTTTATAGCACTGAAAAATCTGTTCATTTGTATGTATGCCTGT
ATGTAGAACAGTAGTAGTAGCAGCTAGAACTGAAAAAATCTGTTTATTTGTATGTATGCC
TTTCCCCCGGTTTTATTGTAGGGGAAGGGGTACGATTAGACTGATATATATATAACTCAA
TTGGTACTAATTTTGTGCTAAAAAAAAAAAAAAAAAAAAAAAAAACTCGAGACTAGTTCT
C

consensusID : consensus_13553#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 474
fasta sequence

                              [GGGGGCCCCGTGGAGGATCACTACCGGACTCTGCAGCTGCCGCGGGGGCCACCAAGGGCGAGGTCAAGAGGGCCTTCCGCCGCTCGCGCTCACGTATCATCCAGACCGTTTCAAAGGACGACGCGACTACGCGGCGTCCATTTCCAGCGGACTCAACCGTGGCCTACCAGACTGGTGACTGGGCACACCACTGACGGGACGGCCGACGGACGAGGCTGGACGATACCTGGACGGCTCAAGTACCGGCCTCGACCGACCGACGGACCCTGGACCAACGTACCCGGACACCCACCTCAACGACCGAACGACCGACCGACTGACACTGGTTCGACCGTCTACACTCTGACGGACTCGTGACACTCGCTGCCTGGACCTGACCGGGACTCAACGACGACACCCGACTGCAAACCACTCTCGGTGTGACTCTGCCCACGTCACTTTGGACTACCTACGACACACTTTACACTACTGTGG]

[+] EMBL BU667293             [GGGGGCCCCGTGGAGGATCACTACCGGACTCTGCAGCTGCCGCGGGGGCCACCAAGGGCGAGGTCAAGAGGGCCTTCCGCCGCTCGCGCTCACGTATCATCCAGACCGTTTCAAAGGACGACGCGACTACGCGGCGTCCATTTCCAGCGGACTCAACCGTGGCCTACCAGACTGGTGACTGGGCACACCACTGACGGGACGGCCGACGGACGAGGCTGGACGATACCTGGACGGCTCAAGTACCGGCCTCGACCGACCGACGGACCCTGGACCAACGTACCCGGACACCCACCTCAACGACCGAACGACCGACCGACTGACACTGGTTCGACCGTCTACACTCTGACGGACTCGTGACACTCGCTGCCTGGACCTGACCGGGACTCAACGACGACACCCGACTGCAAACCACTCTCGGTGTGACTCTGCCCACGTCACTTTGGACTACCTACGACACACTTTACACTACTGTGG]




>consensus_13553#3
GGGGGCCCCGTGGAGGATCACTACCGGACTCTGCAGCTGCCGCGGGGGCCACCAAGGGCG
AGGTCAAGAGGGCCTTCCGCCGCTCGCGCTCACGTATCATCCAGACCGTTTCAAAGGACG
ACGCGACTACGCGGCGTCCATTTCCAGCGGACTCAACCGTGGCCTACCAGACTGGTGACT
GGGCACACCACTGACGGGACGGCCGACGGACGAGGCTGGACGATACCTGGACGGCTCAAG
TACCGGCCTCGACCGACCGACGGACCCTGGACCAACGTACCCGGACACCCACCTCAACGA
CCGAACGACCGACCGACTGACACTGGTTCGACCGTCTACACTCTGACGGACTCGTGACAC
TCGCTGCCTGGACCTGACCGGGACTCAACGACGACACCCGACTGCAAACCACTCTCGGTG
TGACTCTGCCCACGTCACTTTGGACTACCTACGACACACTTTACACTACTGTGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13553#1      ------------------------------------------------------------
consensus_13553#3      ------------------------------------------------------------
consensus_13553#2      ------------------------------------------------------------
consensus_13553#0      CGCACCACCCGCGCGCCCCGCTTGATCGGAGAGGAGGGGGTTTATATTGATTTTTGCGAT 60
                                                                                   

consensus_13553#1      ------------------------------------------------------------
consensus_13553#3      ------------------------------------------------------------
consensus_13553#2      ------------------------------------------------------------
consensus_13553#0      CACTGCATACGTCGTCTTCTTTGCGGATTTGAGACCGAGGATCGATGGCGGCCGGAGGGA 120
                                                                                   

consensus_13553#1      ------------------------------------------------------------
consensus_13553#3      ------------------------------------------------------------
consensus_13553#2      ------------------------------------------------------------
consensus_13553#0      TGCTGTGCGTGTCGTCGTCGCCGACGGCGTCGGCGTCGGTGGCGAGGGGGCGGCGGCAGC 180
                                                                                   

consensus_13553#1      ------------------------------------------------------------
consensus_13553#3      ------------------------------------------------------------
consensus_13553#2      ------------------------------------------------------------
consensus_13553#0      GGCGGAGGAGCGTCGAGGTGAGGTGCAGCTGCCGCCGGGGGCCACCAAGGGCGAGGTCAA 240
                                                                                   

consensus_13553#1      ------------------------------------------------------------
consensus_13553#3      ------------------------------------------------------------
consensus_13553#2      ------------------------------------------------------------
consensus_13553#0      GAGGGCCTTCCGCCGCCTCGCGCTCACGGTGCGTCTCGCCGGATCTGCGCCGGCGTCTCG 300
                                                                                   

consensus_13553#1      ------------------------------------------------------------
consensus_13553#3      ------------------------------------------------------------
consensus_13553#2      ------------------------------------------------------------
consensus_13553#0      GGTTTTTTTTTTTCTCTTTTATTTTTCAGTTATTGCAGAACATTCTTCTGATGAGAGGTT 360
                                                                                   

consensus_13553#1      ------------------------------------------------------------
consensus_13553#3      ------------------------------------------------------------
consensus_13553#2      ------------------------------------------------------------
consensus_13553#0      GGAGAGCTGAAGAAATTTTTTTTTCTCTTGCTGTTCTTGGCGTGCAGTATCATCCAGACG 420
                                                                                   

consensus_13553#1      ------------------------------------------------------------
consensus_13553#3      ------------------------------------------------------------
consensus_13553#2      ------------------------------------------------------------
consensus_13553#0      TTTCAAAGGAGAGCGATAGCGGCGTCCATTTCCAGCGGATCAACGTGGCCTACCAGGTAA 480
                                                                                   

consensus_13553#1      ------------------------------------------------------------
consensus_13553#3      ------------------------------------------------------------
consensus_13553#2      ------------------------------------------------------------
consensus_13553#0      TTTCAAACTAAATCCGATTTCACTCTCACCTCAAAAAAAATCACAGTGAATTATCAACGT 540
                                                                                   

consensus_13553#1      ------CACCACCCGCGCGCCCCGCTTGATCGGAGAGGAGGGGGTTTATATTGATTTTTG 54
consensus_13553#3      ------------------------------------------------------------
consensus_13553#2      ------------------------------------------------------------
consensus_13553#0      CAGTATCATCAGCAACACACCGCAACAACTCTGAATCCAACCAATATCTAGCCAAGAACA 600
                                                                                   

consensus_13553#1      CGATCACTGCATACATCGTCGTCGTCTTCTTTGCGGATTTGAGACCGAGGATCGATGGCG 114
consensus_13553#3      ------------------------------------------------------------
consensus_13553#2      ------------------------------------------------------------
consensus_13553#0      ATAGCATATTAAAATTACCACCACTCCAAACATTTTTCGAGAGTATGATCAGTTGAAACC 660
                                                                                   

consensus_13553#1      GCCGGAGGGATGCTGTGCGTGTCGTCGTCGCCGAC-GGCGTCGGCGTCGGTGGCGAGGGG 173
consensus_13553#3      ------------------------------------------------------------
consensus_13553#2      ---------TTTTTAATAAACAAGTTATTCGCCGA-AAAATTTATTTTATTTCCCCACGC 50
consensus_13553#0      CCTTCTCTGATTTTTTTCACCTCGCCTCGATAGCTTAACGTTGATCTTGTAAACACTTGT 720
                                                                                   

consensus_13553#1      GCGGCGGCAGCGGCGGAGGAGCGTCGAGGTGAGGTGCAGCTCCGTGGCGGCCGCCGGGCC 233
consensus_13553#3      ------------------------------------------------------------
consensus_13553#2      TCTCCTTGTGAAAAGGCCCCACACACGCGAAGATTTAAATTAGGACAATCCTTATGCCAC 110
consensus_13553#0      AACCCTTCTTTTTTTTTCTCTTAATAAAATTTTATCGGCCATCCAAAAAAAAAAAATCTC 780
                                                                                   

consensus_13553#1      GGGGGGCCCCGT---GGAGGATCACTACCGGACTCTGCAGCTGCCGCCGGGGGCCACCAA 290
consensus_13553#3      -GGGGGCCCCGT---GGAGGATCACTACCGGACTCTGCAGCTGCCGC-GGGGGCCACCAA 55
consensus_13553#2      GGGCGGGGGCCC---GGAAGATT-CTTCCGCATTTGG----TTCCGC--CGGGTCAACA- 159
consensus_13553#0      CGTAAACTTTTTTTTAATGAACCGACACAACACAGTGCCAATTTCAT-TGAATATAGCAG 839
                        *                  *      *   *    *    *  *          * ** 

consensus_13553#1      GGGCGAGGTCAAGAGGGCCTTCCGCCGCCTCGCGCTCACGTATCATCCAGAC-GTTTCAA 349
consensus_13553#3      GGGCGAGGTCAAGAGGGCCTTCCGCCGC-TCGCGCTCACGTATCATCCAGACCGTTTCAA 114
consensus_13553#2      -GGTCATGTCAAAGGG---CTTCGCCGC-TTGGGCTC-TTTATCATC-AGAC--GTTTAA 210
consensus_13553#0      GAGAAAAAACTGTAAA--CCTCTGCAAACTTTAAATTCAGTAT--TTTAGAT---TCTTA 892
                         *  *   *          *  **    *     *    ***  *  ***    *   *

consensus_13553#1      AGGAGAGCGATA----GCGGCGTCCATTTCCAGCGGA-TCAAC-GTGGCCTACCAGA-TG 402
consensus_13553#3      AGGACGACGCGACTACGCGGCGTCCATTTCCAGCGGACTCAACCGTGGCCTACCAGACTG 174
consensus_13553#2      AGAAGAGCGATA----GCGGCGTCCATTTCCAGCGGATCCAG--GTGGCCTACCAGA-TG 263
consensus_13553#0      GATTCAGTGCAATTTTCAGTTGCTGATCACATTTGGTGTGATGGATGTGCGTGCAGA-TG 951
                               *  *      *  *   **  *    **    *    **  *   **** **

consensus_13553#1      GTGATGGGCAACATGAGGGAGGCCGAGGAGAGGCTGGAGTACTGGAGGCTCAAGTACGGC 462
consensus_13553#3      GTGACTGGGCACACCACTGACG-----GGACGGCCGACGGAC--GAGGCTGGACGATA-C 226
consensus_13553#2      GTGATGGGCAACATGAGGGAGGCCGAGGAGAGGCTGGAGTACTGGAGGCTCAAGTACGGC 323
consensus_13553#0      GTGATGGGCAACATGAGGGAGGCCGAGGAGAGGCTGGAGTACTGGAGGCTCAAGTACGGC 1011
                       ****  **  ***  *  ** *     *   *** *  * **  ******  *  *   *

consensus_13553#1      CTCGACGACGAGGACCTGGACAAGTACAGGAACCACCTCAACGACGAAGACGACGATGA- 521
consensus_13553#3      CTGGACGGCT----------CAAGTACCGGCCTCGACCGACCGACGGACCCTGGACCAAC 276
consensus_13553#2      CTCGACGACGAGGACCTGGACAAGTACAGGAACCACCTCAACGACGAAGACGACGATGA- 382
consensus_13553#0      CTCGACGACGAGGACCTGGACAAGTACAGGAACCACCTCAACGACGAAGACGACGATGA- 1070
                       ** **** *           ******* **   *  *  * ***** *  *       * 

consensus_13553#1      ATGGTTCGACGTCTAATCTGAGGATCGTGAATCGCTGCCTGGACTGACG--GGATCAACG 579
consensus_13553#3      GTACCCGGACACCCACCTCAACGACCG--AACGACCGACCG-ACTGACACTGGTTCGACC 333
consensus_13553#2      ATGGTTCGACGTCTAATCTGAGGATCGTGAATCGCTGCCTGGACTGACG--GGATCAACG 440
consensus_13553#0      ATGGTTCGACGTCTAATCTGAGGATCGTGAATCGCTGCCTGGACTGACG--GGATCAACG 1128
                        *     ***  * *     * ** **  **   * * * * ******   ** ** ** 

consensus_13553#1      AGCACAGATGCAAACCATCTCGTTGATCTCCATCATTGATACTAGAAATTTAATCTTGTT 639
consensus_13553#3      GTC-TACACTCTGACGGACTCGTGACACTCGCTGCCTGGACCTG---ACCGGGACTCAAC 389
consensus_13553#2      AGCACAGATGCAAACCATCTCGTTGATCTCCATCATTGATACTAGAAATTTAATCTTGTT 500
consensus_13553#0      AGCACAGATGCAAACCATCTCGTTGATCTCCATCATTGATACTAGAAATTTAATCTTGTT 1188
                         *  * *  *  **   *****    ***  *   **   **    *      **    

consensus_13553#1      TATAGCACTGAAAAATCTGTTCATTTGTATGTATGCCTGTATGTAGAACAGTAGTAGTAG 699
consensus_13553#3      GACGACACCCGACTGCAAACCACTCTCGGTGTGACTCTGCCCACGTCACTTTGG-ACTAC 448
consensus_13553#2      TATAGCACTGAAAAATCTGTTCATTTGTATGTATGCCTGTATGTAGAACAGTAGTAGTAG 560
consensus_13553#0      TATAGCACTGAAAAATCTGTTCATTTGTATGTATGCCTGTATGTAGAACAGTAGTAGTAG 1248
                        *   ***   *           * *   ***    ***        **  * * * ** 

consensus_13553#1      CAGCTAGA-ACTGAAAAAATCTGTTTATTTGTATGTATGCCTTTCCCCCGGTTTTATTGT 758
consensus_13553#3      CTACGACACACTTTACACTACTGTGG---------------------------------- 474
consensus_13553#2      CAGCTAGA-ACTGAAAAAATCTGTTTATTTGTATGTATGCCTTTCCCCCGGTTTTATTGT 619
consensus_13553#0      CAGCTAGA-ACTGAAAAAATCTGTTTATTTGTATGTATGCCTTTCCCCCGGTTTTATTGT 1307
                       *  * * * ***  * *   ****                                    

consensus_13553#1      AGGGGAAGGGGTACGATTAGACTGATATATATATAACTCAATTGGTACTAATTTTGTGCT 818
consensus_13553#3      ------------------------------------------------------------
consensus_13553#2      AGGGGAAGGGGTACGATTAGACTGATATATATATAACTCAATTGGTACTAATTTTGTGCT 679
consensus_13553#0      AGGGGAAGGGGTACGATTAGACTGATATATATATAACTCAATTGGTACTAANAAAAAAAA 1367
                                                                                   

consensus_13553#1      TATAATTATATGGTCTCTTGATCGANAAAAAAAAAAAAAAAAAAAAAGGAAAAAAAAAAA 878
consensus_13553#3      ------------------------------------------------------------
consensus_13553#2      AAAAAAAAAAAAAAAAAAAAAAAAAACTCGAGACTAGTTCTC------------------ 721
consensus_13553#0      AAAA-------------------------------------------------------- 1371
                                                                                   

consensus_13553#1      AAAAAAAAAAAAAAAAGCACCTCGGC 904
consensus_13553#3      --------------------------
consensus_13553#2      --------------------------
consensus_13553#0      --------------------------