These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13555#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1687 fasta sequence [CTTCGCTTTAAATTTTGTGGTAGATTTTTGTCTCCTTCGCTCTCCACGCTACCGCCTCGCCGTGCCGGAGCCCGGGCGTTCCCCGCCGCCGAGAACCTCCGCCTCCGCCTCCATCTCCTCCGCCGCCGCCGCAGATGGATCGGGAAGAAGTGACGGAGTTCCTCGGCCAGGTGCCCCTCCTGCAGTGCCTCCCCAGCTCCTCCATCCGCAGGATCGCCGACGCCGTCCTGGTGAAGCGCTACGAACCTGGTGGTTACGTTGCTCGTGAAGGTGACCCTGTAGATGGCCTTTACATCATATTGGATGGGCAGGCTGAGGTTTCAGCTCCTGCAAACACAGAAGAAGAAAACCGCCCTGACTATGTGTTAAATAAGTATGACTACTTTGGTTATGGAACCAATAGTTCTGTGCATCAAGTAAATGTTATTGCAGTATCAAAGCTGACCTGCTTCGTATTGCCAAATCAATATGGACACTTGTTGCAACCAAAGACCATTTGGAGTGCAGAAGAGACACCTGAGAACCATTCTTTGCTAGAACAAATTTTGCACTTAGAGCCATTGGAGGTCGATATCTTCCGTGGGTTTACTTTGCCAGGAGCTCCGACTTTTAGGCAAGTTTTTGGAGGACAGTTGATAGGACAGGCACTAGCAGCAGCATCCAAGACCGTTGACTGCCTAAAAGCGGTGCACAGTTTGCACGCAATTTTCCTTATCGCAGGAGACAAGAATTTGCCAATAATATATCAGGTTCATCGGGCGCGCGATGGAACAAGCTTTGCCACCAGAAAAGTGGAGGCAAAGCAAAAGGGCCTTGTCATTTTCACCTTGATTGCTTCATTCCAGAAAGACGAATTAGGGTTTGAGCATCAAGCTGCAATCATGCCTGATGTTCCTCCTCCAGAAGAGCTCCTGAATCTGGAAGAGATACGGGAAAGAAGACTTACTGATCCTCGCTTCCCAATGCAATATAGGAACTCAGCTGCCAAGAAAAAGTTCGTACCTTGGCCCATAGAAATGAGGTTTTGTGAAGATTCAGCATCTCAACATAAACCAAGCTTAAATTATTGGTTTAGAGCCAGAGGAAAACTTTCTGATGATCCAGCACTGCATAGGTGTGTTGTAGCATATGCTTCGGATCTACTATATTCTGGTGTCAGCCTAAATCCTCATAGGGAGAAGGGTCTGAAGACATACTCACTCAGTCTTGATCACTCGATTTGGTTCCACAAGCCTGTGAAAGCTGATGATTGGCTTTTATATGTGATCGACAGCCCATCTGCACACGGTGGGC-GGGGTTTTGTTACAGGGCGAATGTTCAACCGACAAGGAGAGCTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGCGAAGACGCCAGGACAACCGTCACAAACCCCAAGGCCAAAGCTTTGAGAGGTGCAGAAGAGCAGTATTATCGTTTCATTTTTGGCACTTTCACAGTTATTTTCCTTTTCAATGGAAGTCTATAACACGTAGACGTGAAGCCGAAGTATAGCATACTGCATATATGTAGCAAGAAAAAACGATGGTAAAACT-GGTTCTGTAATTCACGAACAGCTTACTGACATACCACGTATGTATTGGATCGGGAAAAATAAGCGAAGAACTTGGTATCGC-TTTTTTTTTATCTCAATAAAGCCTTCAATTATTTCAAAAAA] [+] EMBL AK102197 [CTTCGCTTTAAATTTTGTGGTAGATTTTTGTCTCCTTCGCTCTCCACGCTACCGCCTCGCCGTGCCGGAGCCCGGGCGTTCCCCGCCGCCGAGAACCTCCGCCTCCGCCTCCATCTCCTCCGCCGCCGCCGCAGATGGATCGGGAAGAAGTGACGGAGTTCCTCGGCCAGGTGCCCCTCCTGCAGTGCCTCCCCAGCTCCTCCATCCGCAGGATCGCCGACGCCGTCCTGGTGAAGCGCTACGAACCTGGTGGTTACGTTGCTCGTGAAGGTGACCCTGTAGATGGCCTTTACATCATATTGGATGGGCAGGCTGAGGTTTCAGCTCCTGCAAACACAGAAGAAGAAAACCGCCCTGACTATGTGTTAAATAAGTATGACTACTTTGGTTATGGAACCAATAGTTCTGTGCATCAAGTAAATGTTATTGCAGTATCAAAGCTGACCTGCTTCGTATTGCCAAATCAATATGGACACTTGTTGCAACCAAAGACCATTTGGAGTGCAGAAGAGACACCTGAGAACCATTCTTTGCTAGAACAAATTTTGCACTTAGAGCCATTGGAGGTCGATATCTTCCGTGGGTTTACTTTGCCAGGAGCTCCGACTTTTAGGCAAGTTTTTGGAGGACAGTTGATAGGACAGGCACTAGCAGCAGCATCCAAGACCGTTGACTGCCTAAAAGCGGTGCACAGTTTGCACGCAATTTTCCTTATCGCAGGAGACAAGAATTTGCCAATAATATATCAGGTTCATCGGGCGCGCGATGGAACAAGCTTTGCCACCAGAAAAGTGGAGGCAAAGCAAAAGGGCCTTGTCATTTTCACCTTGATTGCTTCATTCCAGAAAGACGAATTAGGGTTTGAGCATCAAGCTGCAATCATGCCTGATGTTCCTCCTCCAGAAGAGCTCCTGAATCTGGAAGAGATACGGGAAAGAAGACTTACTGATCCTCGCTTCCCAATGCAATATAGGAACTCAGCTGCCAAGAAAAAGTTCGTACCTTGGCCCATAGAAATGAGGTTTTGTGAAGATTCAGCATCTCAACATAAACCAAGCTTAAATTATTGGTTTAGAGCCAGAGGAAAACTTTCTGATGATCCAGCACTGCATAGGTGTGTTGTAGCATATGCTTCGGATCTACTATATTCTGGTGTCAGCCTAAATCCTCATAGGGAGAAGGGTCTGAAGACATACTCACTCAGTCTTGATCACTCGATTTGGTTCCACAAGCCTGTGAAAGCTGATGATTGGCTTTTATATGTGATCGACAGCCCATCTGCACACGGTGGGC GGGGTTTTGTTACAGGGCGAATGTTCAACCGACAAGGAGAGCTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGCGAAGACGCCAGGACAACCGTCACAAACCCCAAGGCCAAAGCTTTGAGAGGTGCAGAAGAGCAGTATTATCGTTTCATTTTTGGCACTTTCACAGTTATTTTCCTTTTCAATGGAAGTCTATAACACGTAGACGTGAAGCCGAAGTATAGCATACTGCATATATGTAGCAAGAAAAAACGATGGTAAAACT GGTTCTGTAATTCACGAACAGCTTACTGACATACCACGTATGTATTGGATCGGGAAAAATAAGCGAAGAACTTGGTATCGC TTTTTTTTTATCTCAATAAAGCCTT ] [+] EMBL AK061440 [ GCTTTAAATTTTGTGGTAGATTTTTGTCTCCTTCGCTCTCCACGCTACCGCCTCGCCGTGCCGGAGCCCGGGCGTTCCCCGCCGCCGAGAACCTCCGCCTCCGCCTCCATCTCCTCCGCCGCCGCCGCAGATGGATCGGGAAGAAGTGACGGAGTTCCTCGGCCAGGTGCCCCTCCTGCAGTGCCTCCCCAGCTCCTCCATCCGCAGGATCGCCGACGCCGTCCTGGTGAAGCGCTACGAACCTGGTGGTTACGTTGCTCGTGAAGGTGACCCTGTAGATGGCCTTTACATCATATTGGATGGGCAGGCTGAGGTTTCAGCTCCTGCAAACACAGAAGAAGAAAACCGCCCTGACTATGTGTTAAATAAGTATGACTACTTTGGTTATGGAACCAATAGTTCTGTGCATCAAGTAAATGTTATTGCAGTATCAAAGCTGACCTGCTTCGTATTGCCAAATCAATATGGACACTTGTTGCAACCAAAGACCATTTGGAGTGCAGAAGAGACACCTGAGAACCATTCTTTGCTAGAACAAATTTTGCACTTAGAGCCATTGGAGGTCGATATCTTCCGTGGGTTTACTTTGCCAGGAGCTCCGACTTTTAGGCAAGTTTTTGGAGGACAGTTGATAGGACAGGCACTAGCAGCAGCATCCAAGACCGTTGACTGCCTAAAAGCGGTGCACAGTTTGCACGCAATTTTCCTTATCGCAGGAGACAAGAATTTGCCAATAATATATCAGGTTCATCGGGCGCGCGATGGAACAAGCTTTGCCACCAGAAAAGTGGAGGCAAAGCAAAAGGGCCTTGTCATTTTCACCTTGATTGCTTCATTCCAGAAAGACGAATTAGGGTTTGAGCATCAAGCTGCAATCATGCCTGATGTTCCTCCTCCAGAAGAGCTCCTGAATCTGGAAGAGATACGGGAAAGAAGACTTACTGATCCTCGCTTCCCAATGCAATATAGGAACTCAGCTGCCAAGAAAAAGTTCGTACCTTGGCCCATAGAAATGAGGTTTTGTGAAGATTCAGCATCTCAACATAAACCAAGCTTAAATTATTGGTTTAGAGCCAGAGGAAAACTTTCTGATGATCCAGCACTGCATAGGTGTGTTGTAGCATATGCTTCGGATCTACTATATTCTGGTGTCAGCCTAAATCCTCATAGGGAGAAGGGTCTGAAGACATACTCACTCAGTCTTGATCACTCGATTTGGTTCCACAAGCCTGTGAAAGCTGATGATTGGCTTTTATATGTGATCGACAGCCCATCTGCACACGGTGGGC GGGGTTTTGTTACAGGGCGAATGTTCAACCGACAAGGAGAGCTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGCGAAGACGCCAGGACAACCGTCACAAACCCCAAGGCCAAAGCTTTGAGAGGTGCAGAAGAGCAGTATTATCGTTTCATTTTTGGCACTTTCACAGTTATTTTCCTTTTCAATGGAAGTCTATAACACGTAGACGTGAAGCCGAAGTATAGCATACTGCATATATGTAGCAAGAAAAAACGATGGTAAAACT GGTTCTGTAATTCACGAACAGCTTACTGACATACCACGTATGTATTGGATCGGGAAAAATAAGCGAAGAACTTGGTATCGC TTTTTTTTTATCTCAATAAAGCCTTCAATT ] [+] EMBL CF280710 [ TTTAAATTTTGTGGTAGATATTTGCCTCCTTCGCTCTCCACGCTACCGCCTCGCCGTGCCGGAGCCCGGGCGTTCCCCGCCGCCGAGAACCTCCGCCTCCGCCTCCATCTCCTCCGCCGCCGCCGCAGATGGATCGGGAAGAAGTGACGGTTTTTCTCGGCCAGGTGCCCCTCCTGCAGTGCCTCCCCAGCTCCT TTTCTTTAGGATCGCCGACGCCGTCCTGGTGAAGCGCTACGAACCTGGTGGTTACGTTGCTCGTGAAGGTGACCCTGTAGATGGCCTTTACATCATATTGGATGGGCAGGCTGAGGTTTCAGCTCCTGCAAACACAGAAGAAGAAAACCGCCCTGACTATGTGTTAAATAAGTATGACTACTTTGGTTATGGAACCAATAGTTCTGTGCATCAAGTAAATGTTATTGCAGTATCAAAGCTGACCTGCTTCGTATTGCCAAATCAATATGGACA ] [+] EMBL CB623494 [ cGAATGTGACACAGTAGATGGACTATACATCATATTGGATGGGCAGGCTGAGGATTCAGCTCCTTCATATACCTAAAAAGAAAACCGCCCTGACTATGTGTTAAATAAATATGACTACTTTGGTTATGGAACCAATAGTTCTGTGCATCAAGTAAATGTTATTGCAGTATCAAAGCTGACCTGCTTCGTATTGCCAAATCAATATGGACACTTGTTGCAACCAAAGACCATTTGGAGTGCAGAAGAGACACCTGAGAACCATTCTTTGCTAGAACAAATTTTGCACTTAGAGCCATTGGAGGTCGATATCTTCCATGGGT ] [+] EMBL AK061940 [ GGCAGGCTGAGGTTTCAGCTCCTGCAAACACAGAAGAAGAAAACCGCCCTGACTATGTGTTAAATAAGTATGACTACTTTGGTTATGGAACCAATAGTTCTGTGCATCAAGTAAATGTTATTGCAGTATCAAAGCTGACCTGCTTCGTATTGCCAAATCAATATGGACACTTGTTGCAACCAAAGACCATTTGGAGTGCAGAAGAGACACCTGAGAACCATTCTTTGCTAGAACAAATTTTGCACTTAGAGCCATTGGAGGTCGATATCTTCCGTGGGTTTACTTTGCCAGGAGCTCCGACTTTTAGGCAAGTTTTTGGAGGACAGTTGATAGGACAGGCACTAGCAGCAGCATCCAAGACCGTTGACTGCCTAAAAGCGGTGCACAGTTTGCACGCAATTTTCCTTATCGCAGGAGACAAGAATTTGCCAATAATATATCAGGTTCATCGGGCGCGCGATGGAACAAGCTTTGCCACCAGAAAAGTGGAGGCAAAGCAAAAGGGCCTTGTCATTTTCACCTTGATTGCTTCATTCCAGAAAGACGAATTAGGGTTTGAGCATCAAGCTGCAATCATGCCTGATGTTCCTCCTCCAGAAGAGCTCCTGAATCTGGAAGAGATACGGGAAAGAAGACTTACTGATCCTCGCTTCCCAATGCAATATAGGAACTCAGCTGCCAAGAAAAAGTTCGTACCTTGGCCCATAGAAATGAGGTTTTGTGAAGATTCAGCATCTCAACATAAACCAAGCTTAAATTATTGGTTTAGAGCCAGAGGAAAACTTTCTGATGATCCAGCACTGCATAGGTGTGTTGTAGCATATGCTTCGGATCTACTATATTCTGGTGTCAGCCTAAATCCTCATAGGGAGAAGGGTCTGAAGACATACTCACTCAGTCTTGATCACTCGATTTGGTTCCACAAGCCTGTGAAAGCTGATGATTGGCTTTTATATGTGATCGACAGCCCATCTGCACACGGTGGGC GGGGTTTTGTTACAGGGCGAATGTTCAACCGACAAGGAGAGCTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGCGAAGACGCCAGGACAACCGTCACAAACCCCAAGGCCAAAGCTTTGAGAGGTGCAGAAGAGCAGTATTATCGTTTCATTTTTGGCACTTTCACAGTTATTTTCCTTTTCAATGGAAGTCTATAACACGTAGACGTGAAGCCGAAGTATAGCATACTGCATATATGTAGCAAGAAAAAACGATGGTAAAACT GGTTCTGTAATTCACGAACAGCTTACTGACATACCACGTATGTATTGGATCGGGAAAAATAAGCGAAGAACTTGGTATCGC TTTTTTTTTATCTCAATAAAGCCTT ] [-] EMBL CB667201 [ TGAGCATCAAGCTGCAATCATGCCTGATGTTCCTCCTCCAGAAGAGCTCCTGAATCTGGAAGAGATACGGGAAAGAAGACTTACTGATCCTCGCTTCCCAATGCAATATAGGAACTCAGCTGCCAAGAAAAAGTTCGTACCTTGGCCCATAGAAATGAGGTTTTGTGAAGATTCAGCATCTCAACATAAACCAAGCTTAAATTATTGGTTTAGAGCCAGAGGAAAACTTTCTGATGATCCAGCACTGCATAGGTGTGTTGTAGCATATGCTTCGGATCTACTATATTCTGGTGTCAGCCTAAATCCTCATAGGGAGAAGGGTCTGAAGACATACTCACTCAGTCTTGATCACTCGATTTGGTTCCACAAGCCTGTGAAAGCTGATGATTGGCTTTTATATGTGATCGACAGCCCATCTGCACACGGTGGGC GGGGTTTTGTTACAGGGCGAATGTTCAACCGACAAGGAGAGCTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGCGAAGACGCCAGGACAACCGTCACAAACCCCAAGGCCAAAGCTTTGAGAGGTGCAGAAGAGCAGTATTATCGTTTCATTTTTGGCACTTTCACAGTTATTTTCCTTTTCAATGGAAGTCTATAACACGTAGACGTGAAGCCGAAGTATAGCATACTGCATATATGTAGCAAGAAAAAACGATGGTAAAACT GGTTCTGTAATTCACGAACAGCTTACTGACATACCACGTATGTATTGGATCGGGAAAAATAAGCGAAGAACTTGGTATCGC TTTTTTTTATCT ] [+] EMBL CF309946 [ TGCAATCATGCCTGATGTTCCTCCTCCAGAAGAGCTCCTGAATCTGGAAGAGATACGGGAAAGAAGACTTACTGATCCTCGCTTCCCAATGCAATATAGGAACTCAGCTGCCAAGAAAAAGTTCGTACCTTGGCCCATAGAAATGAGGTTTTGTGAAGATTCAGCATCTCAACATAAACCAAGCTTAAATTATTGGTTTAGAGCCAGAGGAAAACTTTCTGATGATCCAGTACTGCATAGGTGTGTTGTAGCATATGCTTCGGATCTACTATATTCTGGTGTCAGCCTAAATCCTCATA GGAGAAGGGTCTGAAGACATACTCACTCAGTCTTGATCACTCGATTTGGTTCCACAAGCCTGTGAAAGCTGATGATTGGCTTTTATATGTGATCGACAGCCCATCTGCACACGGTGGGCGGGGGTTTTGTCACAGGGCGAATGTTCAACCGACAAGGAGAGCTCGTCATGTCGTTGACCCAAGAGGCGCTGATTANGAGGGCGAAGACGCCAGGACAACCGTCACAAACCCCAAGGCCAAAGCTTTGAGAGGTGCAGAAGAGCAGTATTATCGTTTCATTTTTGGCACTTTCACAGTTATTTTCCTTTTCAATGGAAGTCTATAACACGTAGACGTGAAGCCGAAGTATAGCATACTGCATATATGTAGCAAGAAAAAACGATGGTAAAACTGGGTTCTGTAATTCACGA ] [-] EMBL CB623495 [ AGAGCCAGAGGAAAACTTTGTGAGGATCCAGCACGGCATAGGTGTGTGGTAGCATATGCTTCGGATGTACTATATTGGGGGGTCAGCCTAAATCCTCATAGGGAGAAGGGTCGGAAGGCATACTCACTCAGTCTTGATCACTGGATTGGGTTCCTCAAGCCTGTGAAAGCTGATGATTGGCTTTTATATGTGATCGGCAGCCCATCTGCACACGGTGGGC GGGGGTTTGTTACAGGGGGAATGTTCAGCCGACAAGGAGAGCTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGGGAAGACGCCAGGACAACCGTCACAAACCCCAAGGCCAAAGCTTTGAGAGGTGCAGAAGAGCAGTATTATCGTTTCATTTTTGGCA ATTCACAGTTATTTTCCTTTTCAATGGAAGTCTATAACACGTAGACGTGAAGCCGAAGTATAGCATGCTGCATATATGTAGCAAGAAAAGACGATGGTAAAACT GGTTCTGTAATTCACGAACAGCTTAGTGACATACCACGTAT TATTGGATCGGCAAAAGGGAGCAAAGAACTTGGTA ] [+] EMBL BQ906059 [ TGATTGGCTTTTATATGTGATCGACAGCCCATCTGCACACGGTGGGC GGGGTTTTGTTACAGGGCGAATGTTCAACCGACAAGGAGAGCTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGCGAAGACGCCAGGACAACCGTCACAAACCCCAAGGCCAAAGCTTTGAGAGGTGCAGAAGAGCAGTATTATCGTTTCATTTTTGGCA ATTCACAGTTATTTTCCTTTTCAATGGAAGTCTATAACACGTAGACGTGAAGCCGAAGTATAGCATACTGCATATATGTAGCAAGAAAAAACGATGGTAAAACT GGTTCTGTAATTCACGAACAGCTTACTGACATACCACGTATGTATTGGATCGGGAAAAATAAGCGAAGAACTTGGTATCGC NTTTTTTTTATCTCAAAAAAaaaa ] [-] EMBL CF280709 [ CCAAAGCTTTGAGAGGTGCAGAAGAGCAGTATTATCGTTTCATTTTTGGCACTTTCACAGTTATTTTCCTTTTCAATGGAAGTCTATAACACGTAGACGTGAAGCCGAAGTATAGCATACTGCATATATGTAGCAAGAAAAAACGATGGTAAAACT GGTTCTGTAATTCACGAACAGCTTACTGACATACCACGTATGTATTGGATCGGGAAAAATAAGCGAAGAACATGGTATCGCTTTTTTTTTTATCTCAATAAAGCCTTCAATTATTTCAAAAAA] consensusID : consensus_13555#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 817 fasta sequence [CCAGGTGCCCCTCCTGCAGTGCCTCCCCAGCTCCTCCATCCGCAGGATCGCCGACGCCGTCCTGGTGAAGCGCTACGAACCTGGTGGTTACGTTGCTCGTGAAGGTGACCCTGTAGATGGCCTTTACATCATATTGGATGGGCAGGCTGAGGTTTCAGCTCCTGCAAACACAGAAGAAGAAAACCGCCCTGACTATGTGTTAAATAAGTATGACTACTTTGGTTATGGAACCAATAGTTCTGTGCATCAAGTAAATGTTATTGCAGTATCAAAGGTTCCTTGTTCATGTTTCTATTTTTAATAACAGTATAAGCTGATGGTGTCCCTACTGTAATAATAAATATCTTCTGGCTTCAGCTTATTGTTAGTATCCTATTTTGCAGCTGACCTGCTTCGTATTGCCAAATCAATATGGACACTTGTTGCAACCAAAGACCATTTGGAGTGCAGAAGAGACACCTGAGAACCATTCTTTGCTAGAACAAATTTTGCACTTAGAGCCATTGGAGGTCGATATCTTCCGTGGGTTTACTTTGCCAGGAGCTCCGACTTTTAGGCAAGTTTTTGGAGGACAGTTGATAGGACAGGCACTAGCAGCAGCATCCAAGACCGTTGACTGCCTAAAAGCGGTGCACAGTTTGCACGCAATTTTCCTTATCGCAGGAGACAAGAATTTGCCAATAATATATCAGGTTCATCGGGCGCGCGATGGAACAAGCTTTGCCACCAGAGAAGTGGAGGCAAAGCAAAAGGGCCTTGTCATTTTCACCTTGATTGCTTCATTCCAGAAAGACGAATTAGGGTTTGAGCATCAAGC] [+] EMBL CB667200 [CCAGGTGCCCCTCCTGCAGTGCCTCCCCAGCTCCTCCATCCGCAGGATCGCCGACGCCGTCCTGGTGAAGCGCTACGAACCTGGTGGTTACGTTGCTCGTGAAGGTGACCCTGTAGATGGCCTTTACATCATATTGGATGGGCAGGCTGAGGTTTCAGCTCCTGCAAACACAGAAGAAGAAAACCGCCCTGACTATGTGTTAAATAAGTATGACTACTTTGGTTATGGAACCAATAGTTCTGTGCATCAAGTAAATGTTATTGCAGTATCAAAGGTTCCTTGTTCATGTTTCTATTTTTAATAACAGTATAAGCTGATGGTGTCCCTACTGTAATAATAAATATCTTCTGGCTTCAGCTTATTGTTAGTATCCTATTTTGCAGCTGACCTGCTTCGTATTGCCAAATCAATATGGACACTTGTTGCAACCAAAGACCATTTGGAGTGCAGAAGAGACACCTGAGAACCATTCTTTGCTAGAACAAATTTTGCACTTAGAGCCATTGGAGGTCGATATCTTCCGTGGGTTTACTTTGCCAGGAGCTCCGACTTTTAGGCAAGTTTTTGGAGGACAGTTGATAGGACAGGCACTAGCAGCAGCATCCAAGACCGTTGACTGCCTAAAAGCGGTGCACAGTTTGCACGCAATTTTCCTTATCGCAGGAGACAAGAATTTGCCAATAATATATCAGGTTCATCGGGCGCGCGATGGAACAAGCTTTGCCACCAGAGAAGTGGAGGCAAAGCAAAAGGGCCTTGTCATTTTCACCTTGATTGCTTCATTCCAGAAAGACGAATTAGGGTTTGAGCATCAAGC] consensusID : consensus_13555#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 226 fasta sequence [CGCCGGGCCGGAGCCCGGGCGTTCCCCGCCGCCGAGAACCTCCGCCTCCGCCTCCATCTCCTTCGCCGCCGCCGCAAATGGATCGGGAACAAATGACGGAGTTCCTCGGGCAGGTGCCCCTCCTGCAGAGCCTTCCCAGCTTCTACGTCCGGAAGATCGCCTAAGCCGTCCCGGTGAAGCGCTACCAACGTGCTGGTTACGTAGCTGGAGAAGAGACCCTGTCAAT] [+] EMBL CF317930 [CGCCGGGCCGGAGCCCGGGCGTTCCCCGCCGCCGAGAACCTCCGCCTCCGCCTCCATCTCCTTCGCCGCCGCCGCAAATGGATCGGGAACAAATGACGGAGTTCCTCGGGCAGGTGCCCCTCCTGCAGAGCCTTCCCAGCTTCTACGTCCGGAAGATCGCCTAAGCCGTCCCGGTGAAGCGCTACCAACGTGCTGGTTACGTAGCTGGAGAAGAGACCCTGTCAAT] consensusID : consensus_13555#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 178 fasta sequence [AGACGTGAAGCCGAAGTATAGCATACTGCATATATGTAGCAAGAAAAAACGATGGTAAAACTGGTTCTGTAATTCACGAACAGCTTACTGACATACCACGTATGTATTGGATCGGGAAAAATAAGCGAAGAACTTGGTATCGCTTTTTTTTTATCTCAAAAAAAAAAAAAAAAAAAAA] [+] EMBL OSS1528A [AGACGTGAAGCCGAAGTATAGCATACTGCATATATGTAGCAAGAAAAAACGATGGTAAAACTGGTTCTGTAATTCACGAACAGCTTACTGACATACCACGTATGTATTGGATCGGGAAAAATAAGCGAAGAACTTGGTATCGCTTTTTTTTTATCTCAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13555#0 CTTCGCTTTAAATTTTGTGGTAGATTTTTGTCTCCTTCGCTCTCCACGCTACCGCCTCGC 60 consensus_13555#3 ------------------------------------------------------------ consensus_13555#2 ------------------------------------------------------------ consensus_13555#1 ------------------------------------------------------------ consensus_13555#0 CGTGCCGGAGCCCGGGCGTTCCCCGCCGCCGAGAACCTCCGCCTCCGCCTCCATCTCCTC 120 consensus_13555#3 ------------------------------------------------------------ consensus_13555#2 ------------------------------------------------------------ consensus_13555#1 ------------------------------------------------------------ consensus_13555#0 CGCCGCCGCCGCAGATGGATCGGGAAGAAGTGACGGAGTTCCTCGGCCAGGTGCCCCTCC 180 consensus_13555#3 ------------------------------------------------------------ consensus_13555#2 ------------------------------------------------------------ consensus_13555#1 ------------------------------------------------------------ consensus_13555#0 TGCAGTGCCTCCCCAGCTCCTCCATCCGCAGGATCGCCGACGCCGTCCTGGTGAAGCGCT 240 consensus_13555#3 ------------------------------------------------------------ consensus_13555#2 ------------------------------------------------------------ consensus_13555#1 ------------------------------------------------------------ consensus_13555#0 ACGAACCTGGTGGTTACGTTGCTCGTGAAGGTGACCCTGTAGATGGCCTTTACATCATAT 300 consensus_13555#3 ------------------------------------------------------------ consensus_13555#2 ------------------------------------------------------------ consensus_13555#1 ------------------------------------------------------------ consensus_13555#0 TGGATGGGCAGGCTGAGGTTTCAGCTCCTGCAAACACAGAAGAAGAAAACCGCCCTGACT 360 consensus_13555#3 ------------------------------------------------------------ consensus_13555#2 ------------------------------------------------------------ consensus_13555#1 ------------------------------------------------------------ consensus_13555#0 ATGTGTTAAATAAGTATGACTACTTTGGTTATGGAACCAATAGTTCTGTGCATCAAGTAA 420 consensus_13555#3 ------------------------------------------------------------ consensus_13555#2 ------------------------------------------------------------ consensus_13555#1 ------------------------------------------------------------ consensus_13555#0 ATGTTATTGCAGTATCAAAGCTGACCTGCTTCGTATTGCCAAATCAATATGGACACTTGT 480 consensus_13555#3 ------------------------------------------------------------ consensus_13555#2 ------------------------------------------------------------ consensus_13555#1 ------------------------------------------------------------ consensus_13555#0 TGCAACCAAAGACCATTTGGAGTGCAGAAGAGACACCTGAGAACCATTCTTTGCTAGAAC 540 consensus_13555#3 ------------------------------------------------------------ consensus_13555#2 ------------------------------------------------------------ consensus_13555#1 ------------------------------------------------------------ consensus_13555#0 AAATTTTGCACTTAGAGCCATTGGAGGTCGATATCTTCCGTGGGTTTACTTTGCCAGGAG 600 consensus_13555#3 ------------------------------------------------------------ consensus_13555#2 ------------------------------------------------------------ consensus_13555#1 ------------------------------------------------------------ consensus_13555#0 CTCCGACTTTTAGGCAAGTTTTTGGAGGACAGTTGATAGGACAGGCACTAGCAGCAGCAT 660 consensus_13555#3 ------------------------------------------------------------ consensus_13555#2 ------------------------------------------------------------ consensus_13555#1 ------------------------------------------------------------ consensus_13555#0 CCAAGACCGTTGACTGCCTAAAAGCGGTGCACAGTTTGCACGCAATTTTCCTTATCGCAG 720 consensus_13555#3 ------------------------------------------------------------ consensus_13555#2 ------------------------------------------------------------ consensus_13555#1 ------------------------------------------------------------ consensus_13555#0 GAGACAAGAATTTGCCAATAATATATCAGGTTCATCGGGCGCGCGATGGAACAAGCTTTG 780 consensus_13555#3 ------------------------------------------------------------ consensus_13555#2 ------------------------------------------------------------ consensus_13555#1 ------------------------------------------------------------ consensus_13555#0 CCACCAGAAAAGTGGAGGCAAAGCAAAAGGGCCTTGTCATTTTCACCTTGATTGCTTCAT 840 consensus_13555#3 ------------------------------------------------------------ consensus_13555#2 ------------------------------------------------------------ consensus_13555#1 ------------------------------------------------------------ consensus_13555#0 TCCAGAAAGACGAATTAGGGTTTGAGCATCAAGCTGCAATCATGCCTGATGTTCCTCCTC 900 consensus_13555#3 ------------------------------------------------------------ consensus_13555#2 ------------------------------------------------------------ consensus_13555#1 -----------------------------------------------CCAGGTGCCCCTC 13 consensus_13555#0 CAGAAGAGCTCCTGAATCTGGAAGAGATACGGGAAAGAAGACTTACTGATCCTCGCTTCC 960 consensus_13555#3 ------------------------------------------------------------ consensus_13555#2 ------------------------------------------------------------ consensus_13555#1 CTGCAGTGCCTCCCCAGCTCCTCCATCCGCAGGATCGCCGACGCCGTCCTGGTGAAGCGC 73 consensus_13555#0 CAATGCAATATAGGAACTCAGCTGCCAAGAAAAAGTTCGTACCTTGGCCCATAGAAATGA 1020 consensus_13555#3 ------------------------------------------------------------ consensus_13555#2 ------------------------------------------------------------ consensus_13555#1 TACGAACCTGGTGGTTACGTTGCTCGTGAAGGTGACCCTGTAGATGGCCTTTACATCATA 133 consensus_13555#0 GGTTTTGTGAAGATTCAGCATCTCAACATAAACCAAGCTTAAATTATTGGTTTAGAGCCA 1080 consensus_13555#3 ------------------------------------------------------------ consensus_13555#2 ------------------------------------------------------------ consensus_13555#1 TTGGATGGGCAGGCTGAGGTTTCAGCTCCTGCAAACACAGAAGAAGAAAACCGCCCTGAC 193 consensus_13555#0 GAGGAAAACTTTCTGATGATCCAGCACTGCATAGGTGTGTTGTAGCATATGCTTCGGATC 1140 consensus_13555#3 ------------------------------------------------------------ consensus_13555#2 ------------------------------------------------------------ consensus_13555#1 TATGTGTTAAATAAGTATGACTACTTTGGTTATGGAACCAATAGTTCTGTGCATCAAGTA 253 consensus_13555#0 TACTATATTCTGGTGTCAGCCTAAATCCTCATAGGGAGAAGGGTCTGAAGACATACTCAC 1200 consensus_13555#3 ------------------------------------------------------------ consensus_13555#2 ------------------------------------------------------------ consensus_13555#1 AATGTTATTGCAGTATCAAAGGTTCCTTGTTCATGTTTCTATTTTTAATAACAGTATAAG 313 consensus_13555#0 TCAGTCTTGATCACTCGATTTGGTTCCACAAGCCTGTGAAAGCTGATGATTGGCTTTTAT 1260 consensus_13555#3 ------------------------------------------------------------ consensus_13555#2 ------------------------------------------------------------ consensus_13555#1 CTGATGGTGTCCCTACTGTAATAATAAATATCTTCTGGCTTCAGCTTATTGTTAGTATCC 373 consensus_13555#0 ATGTGATCGACAGCCCATCTGCACACGGTGGGCGGGGTTTTGTTACAGGGCGAATGTTCA 1320 consensus_13555#3 ------------------------------------------------------------ consensus_13555#2 ------------------------------------------------------------ consensus_13555#1 TATTTTGCAGCTGACCTGCTTCGTATTGCCAAATCAATATGGACACTTGTTGCAACCAAA 433 consensus_13555#0 ACCGACAAGGAGAGCTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGCGAAGA 1380 consensus_13555#3 ------------------------------------------------------------ consensus_13555#2 ------------------------------------------------------------ consensus_13555#1 GACCATTTGGAGTGCAGAAGAGACACCTGAGAACCATTCTTTGCTAGAACAAATTTTGCA 493 consensus_13555#0 CGCCAGGACAACCGTCACAAACCCCAAGGCCAAAGCTTTGAGAGGTGCAGAAGAGCAGTA 1440 consensus_13555#3 ------------------------------------------------------------ consensus_13555#2 ------------------------------------------------------------ consensus_13555#1 CTTAGAGCCATTGGAGGTCGATATCTTCCGTGGGTTTACTTTGCCAGGAGCTCCGACTTT 553 consensus_13555#0 TTATCGTTTCATTTTTGGCACTTTCACAGTTATTTTCCTTTTCAATGGAAGTCTATAACA 1500 consensus_13555#3 ------------------------------------------------------------ consensus_13555#2 ----------------------------------CGCCGGGCCGGAGCCCGGGCGTTCCC 26 consensus_13555#1 TAGGCAAGTTTTTGGAGGACAGTTGATAGGACAGGCACTAGCAGCAGCATCCAAGACCGT 613 consensus_13555#0 CGTAGACGTGAAGCCGAAGTATAGCATACT-----GCATATATGTAGCAAGAAAAAACGA 1555 consensus_13555#3 ---AGACGTGAAGCCGAAGTATAGCATACT-----GCATATATGTAGCAAGAAAAAACGA 52 consensus_13555#2 CGCCGCCGAGAACCTCCGCCTCCGCCTCCA-----TCTCCTTCGCCGCCGCCGCAAATGG 81 consensus_13555#1 TGACTGCCTAAAAGCGGTGCACAGTTTGCACGCAATTTTCCTTATCGCAGGAGACAAGAA 673 * ** * * * ** ** consensus_13555#0 TGGTAAAACTGGTTCTGTAATTCA-CGAACAG-----CTTACTG-ACATACCACGTATGT 1608 consensus_13555#3 TGGTAAAACTGGTTCTGTAATTCA-CGAACAG-----CTTACTG-ACATACCACGTATGT 105 consensus_13555#2 ATCGGGAACAAATGACGGAGTTCCTCGGGCAGGTGCCCCTCCTGCAGAGCCTTCCCAGCT 141 consensus_13555#1 TTTGCCAATAATATATCAGGTTCATCGGGCGC-----GCGATGGAACAAGCTTTGCCACC 728 ** *** ** * * * * * consensus_13555#0 ATTGGATCGGGA--AAAATAAGCGAAGAA-CTTGGTATCGCTTT---TTTTTTATCTCAA 1662 consensus_13555#3 ATTGGATCGGGA--AAAATAAGCGAAGAA-CTTGGTATCGCTTT---TTTTTTATCTCAA 159 consensus_13555#2 TCTACGTCCGGA--AGATCGCCTAAGCCGTCCCGGTGAAGCGCT---ACCAACGTGCTGG 196 consensus_13555#1 AGAGAAGTGGAGGCAAAGCAAAAGGGCCTTGTCATTTTCACCTTGATTGCTTCATTCCAG 788 * * * * * * * consensus_13555#0 TAAAGCCTTCAATTATTTCAAAAAA----- 1687 consensus_13555#3 AAAA------AAAAAAAAAAAAAAA----- 178 consensus_13555#2 TTACGTAGCTGGAGAAGAGACCCTGTCAAT 226 consensus_13555#1 AAAGACGAATTAGGGTTTGAGCATCAAGC- 817 * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||